[{"intvolume":" 117","date_published":"2020-09-08T00:00:00Z","citation":{"apa":"Pinotsis, N., Zielinska, K., Babuta, M., Arolas, J. L., Kostan, J., Khan, M. B., … Djinovic-Carugo, K. (2020). Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.1917269117","ista":"Pinotsis N, Zielinska K, Babuta M, Arolas JL, Kostan J, Khan MB, Schreiner C, Testa Salmazo AP, Ciccarelli L, Puchinger M, Gkougkoulia EA, Ribeiro E de A, Marlovits TC, Bhattacharya A, Djinovic-Carugo K. 2020. Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin. Proceedings of the National Academy of Sciences of the United States of America. 117(36), 22101–22112.","short":"N. Pinotsis, K. Zielinska, M. Babuta, J.L. Arolas, J. Kostan, M.B. Khan, C. Schreiner, A.P. Testa Salmazo, L. Ciccarelli, M. Puchinger, E.A. Gkougkoulia, E. de A. Ribeiro, T.C. Marlovits, A. Bhattacharya, K. Djinovic-Carugo, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 22101–22112.","chicago":"Pinotsis, Nikos, Karolina Zielinska, Mrigya Babuta, Joan L. Arolas, Julius Kostan, Muhammad Bashir Khan, Claudia Schreiner, et al. “Calcium Modulates the Domain Flexibility and Function of an α-Actinin Similar to the Ancestral α-Actinin.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2020. https://doi.org/10.1073/pnas.1917269117.","ieee":"N. Pinotsis et al., “Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin,” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 36. National Academy of Sciences, pp. 22101–22112, 2020.","ama":"Pinotsis N, Zielinska K, Babuta M, et al. Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin. Proceedings of the National Academy of Sciences of the United States of America. 2020;117(36):22101-22112. doi:10.1073/pnas.1917269117","mla":"Pinotsis, Nikos, et al. “Calcium Modulates the Domain Flexibility and Function of an α-Actinin Similar to the Ancestral α-Actinin.” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 36, National Academy of Sciences, 2020, pp. 22101–12, doi:10.1073/pnas.1917269117."},"publication":"Proceedings of the National Academy of Sciences of the United States of America","article_processing_charge":"No","quality_controlled":"1","language":[{"iso":"eng"}],"publisher":"National Academy of Sciences","pmid":1,"month":"09","issue":"36","title":"Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin","ddc":["570"],"publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"status":"public","doi":"10.1073/pnas.1917269117","date_created":"2024-03-04T10:03:52Z","main_file_link":[{"url":"https://doi.org/10.1073/pnas.191726911","open_access":"1"}],"acknowledgement":"We thank the staff of the macromolecular crystallography (MX) and SAXS beamlines at the European Synchrotron Radiation facility, Diamond, and Swiss Light Source for excellent support, and the Life Sciences Facility of the Institute of Science and Technology Austria for usage of the rheometer. We thank Life Sciences editors for editing assistance. EM data were\r\nrecorded at the EM Facility of the Vienna BioCenter Core Facilities (Austria). Confocal microscopy was carried out at the Advanced Instrument Research Facility, Jawaharlal Nehru University. K.D.-C.’s research was supported by the Initial Training Network MUZIC (ITN-MUZIC) (N°238423), Austrian Science Fund (FWF) Projects I525, I1593, P22276, P19060, and W1221, Laura Bassi Centre of Optimized Structural Studies (N°253275), a Wellcome Trust Collaborative Award (201543/Z/16/Z), COST Action BM1405, Vienna Science and Technology Fund (WWTF) Chemical Biology Project LS17-008, and Christian Doppler Laboratory for High-Content Structural Biology and Biotechnology. K.Z., J.L.A., C.S., E.A.G., and A.S. were supported by the University of Vienna, J.K. by a Wellcome Trust Collaborative Award and by the Centre of Optimized Structural Studies, M.P. by FWF Project I1593, E.d.A.R. ITN-MUZIC, and FWF Projects I525 and I1593, and T.C.M. and L.C. by FWF Project I 2408-B22. E.A.G. acknowledges the PhD program Structure and Interaction of Biological Macromolecules. M.B. acknowledges the University Grant Commission, India, for a senior research fellowship. A.B. acknowledges a JC Bose Fellowship from the Science Engineering Research Council. ","type":"journal_article","day":"08","_id":"15061","oa_version":"Published Version","article_type":"original","page":"22101-22112","oa":1,"author":[{"first_name":"Nikos","last_name":"Pinotsis","full_name":"Pinotsis, Nikos"},{"full_name":"Zielinska, Karolina","last_name":"Zielinska","first_name":"Karolina"},{"full_name":"Babuta, Mrigya","first_name":"Mrigya","last_name":"Babuta"},{"last_name":"Arolas","first_name":"Joan L.","full_name":"Arolas, Joan L."},{"full_name":"Kostan, Julius","first_name":"Julius","last_name":"Kostan"},{"full_name":"Khan, Muhammad Bashir","last_name":"Khan","first_name":"Muhammad Bashir"},{"full_name":"Schreiner, Claudia","last_name":"Schreiner","first_name":"Claudia"},{"first_name":"Anita P","last_name":"Testa Salmazo","full_name":"Testa Salmazo, Anita P","id":"41F1F098-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Luciano","last_name":"Ciccarelli","full_name":"Ciccarelli, Luciano"},{"full_name":"Puchinger, Martin","last_name":"Puchinger","first_name":"Martin"},{"full_name":"Gkougkoulia, Eirini A.","last_name":"Gkougkoulia","first_name":"Eirini A."},{"full_name":"Ribeiro, Euripedes de Almeida","first_name":"Euripedes de Almeida","last_name":"Ribeiro"},{"last_name":"Marlovits","first_name":"Thomas C.","full_name":"Marlovits, Thomas C."},{"full_name":"Bhattacharya, Alok","last_name":"Bhattacharya","first_name":"Alok"},{"first_name":"Kristina","last_name":"Djinovic-Carugo","full_name":"Djinovic-Carugo, Kristina"}],"external_id":{"pmid":["32848067"]},"abstract":[{"text":"The actin cytoskeleton, a dynamic network of actin filaments and associated F-actin–binding proteins, is fundamentally important in eukaryotes. α-Actinins are major F-actin bundlers that are inhibited by Ca2+ in nonmuscle cells. Here we report the mechanism of Ca2+-mediated regulation of Entamoeba histolytica α-actinin-2 (EhActn2) with features expected for the common ancestor of Entamoeba and higher eukaryotic α-actinins. Crystal structures of Ca2+-free and Ca2+-bound EhActn2 reveal a calmodulin-like domain (CaMD) uniquely inserted within the rod domain. Integrative studies reveal an exceptionally high affinity of the EhActn2 CaMD for Ca2+, binding of which can only be regulated in the presence of physiological concentrations of Mg2+. Ca2+ binding triggers an increase in protein multidomain rigidity, reducing conformational flexibility of F-actin–binding domains via interdomain cross-talk and consequently inhibiting F-actin bundling. In vivo studies uncover that EhActn2 plays an important role in phagocytic cup formation and might constitute a new drug target for amoebic dysentery.","lang":"eng"}],"acknowledged_ssus":[{"_id":"LifeSc"}],"department":[{"_id":"CaBe"}],"date_updated":"2026-06-18T17:45:21Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2020","volume":117,"publication_status":"published"},{"citation":{"ista":"Cipolloni G, Erdös L, Schröder DJ. 2020. Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. 1(1), 101–146.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2020). Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. Mathematical Sciences Publishers. https://doi.org/10.2140/pmp.2020.1.101","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Probability and Mathematical Physics 1 (2020) 101–146.","ama":"Cipolloni G, Erdös L, Schröder DJ. Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. 2020;1(1):101-146. doi:10.2140/pmp.2020.1.101","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Optimal Lower Bound on the Least Singular Value of the Shifted Ginibre Ensemble.” Probability and Mathematical Physics. Mathematical Sciences Publishers, 2020. https://doi.org/10.2140/pmp.2020.1.101.","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Optimal lower bound on the least singular value of the shifted Ginibre ensemble,” Probability and Mathematical Physics, vol. 1, no. 1. Mathematical Sciences Publishers, pp. 101–146, 2020.","mla":"Cipolloni, Giorgio, et al. “Optimal Lower Bound on the Least Singular Value of the Shifted Ginibre Ensemble.” Probability and Mathematical Physics, vol. 1, no. 1, Mathematical Sciences Publishers, 2020, pp. 101–46, doi:10.2140/pmp.2020.1.101."},"date_published":"2020-11-16T00:00:00Z","intvolume":" 1","publisher":"Mathematical Sciences Publishers","language":[{"iso":"eng"}],"month":"11","publication":"Probability and Mathematical Physics","quality_controlled":"1","article_processing_charge":"No","scopus_import":"1","publication_identifier":{"issn":["2690-0998"]},"corr_author":"1","title":"Optimal lower bound on the least singular value of the shifted Ginibre ensemble","issue":"1","acknowledgement":"Partially supported by ERC Advanced Grant No. 338804. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 66538","day":"16","type":"journal_article","status":"public","doi":"10.2140/pmp.2020.1.101","date_created":"2024-03-04T10:27:57Z","arxiv":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1908.01653"}],"page":"101-146","article_type":"original","oa":1,"ec_funded":1,"_id":"15063","project":[{"name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7","grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425"},{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program"}],"oa_version":"Preprint","department":[{"_id":"LaEr"}],"external_id":{"arxiv":["1908.01653"]},"author":[{"first_name":"Giorgio","last_name":"Cipolloni","full_name":"Cipolloni, Giorgio","orcid":"0000-0002-4901-7992","id":"42198EFA-F248-11E8-B48F-1D18A9856A87"},{"id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László","orcid":"0000-0001-5366-9603","last_name":"Erdös","first_name":"László"},{"full_name":"Schröder, Dominik J","orcid":"0000-0002-2904-1856","id":"408ED176-F248-11E8-B48F-1D18A9856A87","first_name":"Dominik J","last_name":"Schröder"}],"abstract":[{"lang":"eng","text":"We consider the least singular value of a large random matrix with real or complex i.i.d. Gaussian entries shifted by a constant z∈C. We prove an optimal lower tail estimate on this singular value in the critical regime where z is around the spectral edge, thus improving the classical bound of Sankar, Spielman and Teng (SIAM J. Matrix Anal. Appl. 28:2 (2006), 446–476) for the particular shift-perturbation in the edge regime. Lacking Brézin–Hikami formulas in the real case, we rely on the superbosonization formula (Comm. Math. Phys. 283:2 (2008), 343–395)."}],"date_updated":"2025-07-10T11:51:06Z","keyword":["General Medicine"],"volume":1,"year":"2020","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"volume":4,"year":"2020","publication_status":"published","file":[{"file_name":"2020_JourApplCompTopology_Bauer.pdf","date_updated":"2024-03-04T10:52:42Z","file_size":851190,"relation":"main_file","content_type":"application/pdf","file_id":"15065","access_level":"open_access","success":1,"creator":"dernst","checksum":"eed1168b6e66cd55272c19bb7fca8a1c","date_created":"2024-03-04T10:52:42Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2024-03-04T10:52:42Z","date_updated":"2024-03-04T10:54:04Z","department":[{"_id":"HeEd"}],"author":[{"last_name":"Bauer","first_name":"U.","full_name":"Bauer, U."},{"orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert","last_name":"Edelsbrunner"},{"first_name":"Grzegorz","last_name":"Jablonski","full_name":"Jablonski, Grzegorz","orcid":"0000-0002-3536-9866","id":"4483EF78-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Mrozek, M.","first_name":"M.","last_name":"Mrozek"}],"abstract":[{"lang":"eng","text":"We call a continuous self-map that reveals itself through a discrete set of point-value pairs a sampled dynamical system. Capturing the available information with chain maps on Delaunay complexes, we use persistent homology to quantify the evidence of recurrent behavior. We establish a sampling theorem to recover the eigenspaces of the endomorphism on homology induced by the self-map. Using a combinatorial gradient flow arising from the discrete Morse theory for Čech and Delaunay complexes, we construct a chain map to transform the problem from the natural but expensive Čech complexes to the computationally efficient Delaunay triangulations. The fast chain map algorithm has applications beyond dynamical systems."}],"article_type":"original","page":"455-480","oa":1,"_id":"15064","oa_version":"Published Version","acknowledgement":"This research has been supported by the DFG Collaborative Research Center SFB/TRR 109 “Discretization in Geometry and Dynamics”, by Polish MNiSzW Grant No. 2621/7.PR/12/2013/2, by the Polish National Science Center under Maestro Grant No. 2014/14/A/ST1/00453 and Grant No. DEC-2013/09/N/ST6/02995. Open Access funding provided by Projekt DEAL.","type":"journal_article","day":"01","status":"public","has_accepted_license":"1","date_created":"2024-03-04T10:47:49Z","doi":"10.1007/s41468-020-00058-8","ddc":["500"],"publication_identifier":{"issn":["2367-1726"],"eissn":["2367-1734"]},"scopus_import":"1","issue":"4","title":"Čech-Delaunay gradient flow and homology inference for self-maps","language":[{"iso":"eng"}],"publisher":"Springer Nature","month":"12","publication":"Journal of Applied and Computational Topology","article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","date_published":"2020-12-01T00:00:00Z","citation":{"ama":"Bauer U, Edelsbrunner H, Jablonski G, Mrozek M. Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. 2020;4(4):455-480. doi:10.1007/s41468-020-00058-8","chicago":"Bauer, U., Herbert Edelsbrunner, Grzegorz Jablonski, and M. Mrozek. “Čech-Delaunay Gradient Flow and Homology Inference for Self-Maps.” Journal of Applied and Computational Topology. Springer Nature, 2020. https://doi.org/10.1007/s41468-020-00058-8.","ieee":"U. Bauer, H. Edelsbrunner, G. Jablonski, and M. Mrozek, “Čech-Delaunay gradient flow and homology inference for self-maps,” Journal of Applied and Computational Topology, vol. 4, no. 4. Springer Nature, pp. 455–480, 2020.","mla":"Bauer, U., et al. “Čech-Delaunay Gradient Flow and Homology Inference for Self-Maps.” Journal of Applied and Computational Topology, vol. 4, no. 4, Springer Nature, 2020, pp. 455–80, doi:10.1007/s41468-020-00058-8.","apa":"Bauer, U., Edelsbrunner, H., Jablonski, G., & Mrozek, M. (2020). Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. Springer Nature. https://doi.org/10.1007/s41468-020-00058-8","ista":"Bauer U, Edelsbrunner H, Jablonski G, Mrozek M. 2020. Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. 4(4), 455–480.","short":"U. Bauer, H. Edelsbrunner, G. Jablonski, M. Mrozek, Journal of Applied and Computational Topology 4 (2020) 455–480."},"intvolume":" 4","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"article_type":"original","page":"1357-1417","citation":{"short":"L. Anderson, T. Hausel, R. Mazzeo, L. Schaposnik, Oberwolfach Reports 16 (2020) 1357–1417.","apa":"Anderson, L., Hausel, T., Mazzeo, R., & Schaposnik, L. (2020). Geometry and physics of Higgs bundles. Oberwolfach Reports. European Mathematical Society. https://doi.org/10.4171/owr/2019/23","ista":"Anderson L, Hausel T, Mazzeo R, Schaposnik L. 2020. Geometry and physics of Higgs bundles. Oberwolfach Reports. 16(2), 1357–1417.","mla":"Anderson, Lara, et al. “Geometry and Physics of Higgs Bundles.” Oberwolfach Reports, vol. 16, no. 2, European Mathematical Society, 2020, pp. 1357–417, doi:10.4171/owr/2019/23.","chicago":"Anderson, Lara, Tamás Hausel, Rafe Mazzeo, and Laura Schaposnik. “Geometry and Physics of Higgs Bundles.” Oberwolfach Reports. European Mathematical Society, 2020. https://doi.org/10.4171/owr/2019/23.","ieee":"L. Anderson, T. Hausel, R. Mazzeo, and L. Schaposnik, “Geometry and physics of Higgs bundles,” Oberwolfach Reports, vol. 16, no. 2. European Mathematical Society, pp. 1357–1417, 2020.","ama":"Anderson L, Hausel T, Mazzeo R, Schaposnik L. Geometry and physics of Higgs bundles. Oberwolfach Reports. 2020;16(2):1357-1417. doi:10.4171/owr/2019/23"},"date_published":"2020-06-04T00:00:00Z","intvolume":" 16","_id":"15070","oa_version":"None","publisher":"European Mathematical Society","language":[{"iso":"eng"}],"department":[{"_id":"TaHa"}],"month":"06","publication":"Oberwolfach Reports","author":[{"first_name":"Lara","last_name":"Anderson","full_name":"Anderson, Lara"},{"full_name":"Hausel, Tamás","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamás","last_name":"Hausel"},{"last_name":"Mazzeo","first_name":"Rafe","full_name":"Mazzeo, Rafe"},{"full_name":"Schaposnik, Laura","last_name":"Schaposnik","first_name":"Laura"}],"quality_controlled":"1","article_processing_charge":"No","abstract":[{"lang":"eng","text":"This workshop focused on interactions between the various perspectives on the moduli space of Higgs bundles over a Riemann surface. This subject draws on algebraic geometry, geometric topology, geometric analysis and mathematical physics, and the goal was to promote interactions between these various branches of the subject. The main current directions of research were well represented by the participants, and the talks included many from both senior and junior participants."}],"publication_identifier":{"issn":["1660-8933"]},"date_updated":"2024-03-11T09:20:34Z","title":"Geometry and physics of Higgs bundles","issue":"2","keyword":["Organic Chemistry","Biochemistry"],"volume":16,"year":"2020","publication_status":"published","type":"journal_article","day":"04","status":"public","doi":"10.4171/owr/2019/23","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-03-04T11:36:31Z"},{"conference":{"start_date":"2020-11-02","location":"Virtual","name":"ECM: Electronic Conference on Microbiology","end_date":"2020-11-30"},"date_published":"2020-11-02T00:00:00Z","citation":{"ama":"Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In: Proceedings of 1st International Electronic Conference on Microbiology. MDPI; 2020. doi:10.3390/ecm2020-07116","ieee":"V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, and V. Shcherbakova, “Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T,” in Proceedings of 1st International Electronic Conference on Microbiology, Virtual, 2020.","chicago":"Oshurkova, Viktoriia, Olga Troshina, Vladimir Trubitsyn, Yana Ryzhmanova, Olga Bochkareva, and Viktoria Shcherbakova. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” In Proceedings of 1st International Electronic Conference on Microbiology. MDPI, 2020. https://doi.org/10.3390/ecm2020-07116.","mla":"Oshurkova, Viktoriia, et al. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” Proceedings of 1st International Electronic Conference on Microbiology, MDPI, 2020, doi:10.3390/ecm2020-07116.","apa":"Oshurkova, V., Troshina, O., Trubitsyn, V., Ryzhmanova, Y., Bochkareva, O., & Shcherbakova, V. (2020). Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In Proceedings of 1st International Electronic Conference on Microbiology. Virtual: MDPI. https://doi.org/10.3390/ecm2020-07116","ista":"Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. 2020. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. Proceedings of 1st International Electronic Conference on Microbiology. ECM: Electronic Conference on Microbiology.","short":"V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, V. Shcherbakova, in:, Proceedings of 1st International Electronic Conference on Microbiology, MDPI, 2020."},"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"language":[{"iso":"eng"}],"publisher":"MDPI","month":"11","publication":"Proceedings of 1st International Electronic Conference on Microbiology","article_processing_charge":"Yes","quality_controlled":"1","ddc":["570"],"title":"Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T","acknowledgement":"The work was supported by of Russian Foundation of Basic Research: grant № 19-04-00831 for Viktoria Shcherbakova and Olga Troshina, grant № 18-34-00334 for Viktoriia Oshurkova and Vladimir Trubitsyn. \r\nWe thank Dr Natalia Suzina (IBPM RAS, Federal Research Center Pushchino Center for\r\nBiological Research RAS) for the help with the microscopic studies, respectively; Dr. Margarita Meyer (Division of Genetics, Department of Medicine, BWH and HMS, USA) and Dr Fedor Kondrashov (IST, Austria) for their help in obtaining the genomic sequence of strain JL01. ","type":"conference","day":"02","has_accepted_license":"1","status":"public","date_created":"2024-03-04T11:41:31Z","doi":"10.3390/ecm2020-07116","oa":1,"_id":"15071","oa_version":"Published Version","department":[{"_id":"FyKo"}],"author":[{"first_name":"Viktoriia","last_name":"Oshurkova","full_name":"Oshurkova, Viktoriia"},{"last_name":"Troshina","first_name":"Olga","full_name":"Troshina, Olga"},{"full_name":"Trubitsyn, Vladimir","first_name":"Vladimir","last_name":"Trubitsyn"},{"full_name":"Ryzhmanova, Yana","last_name":"Ryzhmanova","first_name":"Yana"},{"id":"C4558D3C-6102-11E9-A62E-F418E6697425","orcid":"0000-0003-1006-6639","full_name":"Bochkareva, Olga","last_name":"Bochkareva","first_name":"Olga"},{"first_name":"Viktoria","last_name":"Shcherbakova","full_name":"Shcherbakova, Viktoria"}],"abstract":[{"text":"A mesophilic methanogenic culture, designated JL01, was isolated from Holocene permafrost in the Russian Arctic [1]. After long-term extensive cultivation at 15°C it turned out to be a tied binary culture of archaeal (JL01) and bacterial (Sphaerochaeta associata GLS2) strains.\r\nStrain JL01 was a strict anaerobe and grew on methanol, acetate and methylamines as energy and carbon sources. Cells were irregular coccoid, non-motile, non-spore-forming, and Gram-stainpositive. Optimum conditions for growth were 24-28 oC, pH 6.8–7.3 and 0.075-0.1 M NaCl.\r\nPhylogenetic tree reconstructions based on 16S rRNA and concatenated alignment of broadly\r\nconserved protein-coding genes revealed its close relation to Methanosarcina mazei S-6\r\nT (similarity 99.5%). The comparison of whole genomic sequences (ANI) of the isolate and the type strain of M.mazei was 98.5%, which is higher than the values recommended for new species. Thus strain JL01 (=VKM B-2370=JCM 31898) represents the first M. mazei isolated from permanently subzero Arcticsediments. The long-term co-cultivation of JL01 with S. associata GLS2T showed the methane production without any additional carbon and energy sources. Genome analysis of S. associata GLS2T revealed putative genes involved in methanochondroithin catabolism.","lang":"eng"}],"file_date_updated":"2024-03-20T08:05:46Z","date_updated":"2024-03-20T08:06:22Z","year":"2020","publication_status":"published","file":[{"date_updated":"2024-03-20T08:05:46Z","file_size":595543,"relation":"main_file","file_id":"15127","content_type":"application/pdf","file_name":"2020_ECM_Oshurkova.pdf","success":1,"creator":"dernst","checksum":"d1914af7811a21a4b2744eb51b5834e3","date_created":"2024-03-20T08:05:46Z","access_level":"open_access"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"oa_version":"None","intvolume":" 16","_id":"15072","date_published":"2020-09-10T00:00:00Z","citation":{"ista":"Hainzl C, Schlein B, Seiringer R, Warzel S. 2020. Many-body quantum systems. Oberwolfach Reports. 16(3), 2541–2603.","apa":"Hainzl, C., Schlein, B., Seiringer, R., & Warzel, S. (2020). Many-body quantum systems. Oberwolfach Reports. European Mathematical Society. https://doi.org/10.4171/owr/2019/41","short":"C. Hainzl, B. Schlein, R. Seiringer, S. Warzel, Oberwolfach Reports 16 (2020) 2541–2603.","ama":"Hainzl C, Schlein B, Seiringer R, Warzel S. Many-body quantum systems. Oberwolfach Reports. 2020;16(3):2541-2603. doi:10.4171/owr/2019/41","chicago":"Hainzl, Christian, Benjamin Schlein, Robert Seiringer, and Simone Warzel. “Many-Body Quantum Systems.” Oberwolfach Reports. European Mathematical Society, 2020. https://doi.org/10.4171/owr/2019/41.","ieee":"C. Hainzl, B. Schlein, R. Seiringer, and S. Warzel, “Many-body quantum systems,” Oberwolfach Reports, vol. 16, no. 3. European Mathematical Society, pp. 2541–2603, 2020.","mla":"Hainzl, Christian, et al. “Many-Body Quantum Systems.” Oberwolfach Reports, vol. 16, no. 3, European Mathematical Society, 2020, pp. 2541–603, doi:10.4171/owr/2019/41."},"article_type":"original","page":"2541-2603","abstract":[{"text":"The interaction among fundamental particles in nature leads to many interesting effects in quantum statistical mechanics; examples include superconductivity for charged systems and superfluidity in cold gases. It is a huge challenge for mathematical physics to understand the collective behavior of systems containing a large number of particles, emerging from known microscopic interactions. In this workshop we brought together researchers working on different aspects of many-body quantum mechanics to discuss recent developments, exchange ideas and propose new challenges and research directions.","lang":"eng"}],"article_processing_charge":"No","quality_controlled":"1","author":[{"full_name":"Hainzl, Christian","last_name":"Hainzl","first_name":"Christian"},{"first_name":"Benjamin","last_name":"Schlein","full_name":"Schlein, Benjamin"},{"first_name":"Robert","last_name":"Seiringer","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Warzel, Simone","last_name":"Warzel","first_name":"Simone"}],"publication":"Oberwolfach Reports","department":[{"_id":"RoSe"}],"month":"09","language":[{"iso":"eng"}],"publisher":"European Mathematical Society","title":"Many-body quantum systems","issue":"3","date_updated":"2024-03-12T12:02:00Z","publication_identifier":{"issn":["1660-8933"]},"date_created":"2024-03-04T11:46:12Z","doi":"10.4171/owr/2019/41","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","day":"10","type":"journal_article","publication_status":"published","volume":16,"year":"2020"},{"scopus_import":"1","ddc":["000"],"corr_author":"1","title":"Brief announcement: Efficient load-balancing through distributed token dropping","day":"07","type":"conference","has_accepted_license":"1","status":"public","doi":"10.4230/LIPIcs.DISC.2020.40","date_created":"2024-03-05T07:09:12Z","arxiv":1,"conference":{"end_date":"2020-10-16","name":"DISC: Symposium on Distributed Computing","start_date":"2020-10-12","location":"Virtual"},"citation":{"short":"S. Brandt, B. Keller, J. Rybicki, J. Suomela, J. Uitto, in:, 34th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020.","apa":"Brandt, S., Keller, B., Rybicki, J., Suomela, J., & Uitto, J. (2020). Brief announcement: Efficient load-balancing through distributed token dropping. In 34th International Symposium on Distributed Computing (Vol. 179). Virtual: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.DISC.2020.40","ista":"Brandt S, Keller B, Rybicki J, Suomela J, Uitto J. 2020. Brief announcement: Efficient load-balancing through distributed token dropping. 34th International Symposium on Distributed Computing. DISC: Symposium on Distributed Computing, LIPIcs, vol. 179, 40.","mla":"Brandt, Sebastian, et al. “Brief Announcement: Efficient Load-Balancing through Distributed Token Dropping.” 34th International Symposium on Distributed Computing, vol. 179, 40, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, doi:10.4230/LIPIcs.DISC.2020.40.","chicago":"Brandt, Sebastian, Barbara Keller, Joel Rybicki, Jukka Suomela, and Jara Uitto. “Brief Announcement: Efficient Load-Balancing through Distributed Token Dropping.” In 34th International Symposium on Distributed Computing, Vol. 179. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020. https://doi.org/10.4230/LIPIcs.DISC.2020.40.","ieee":"S. Brandt, B. Keller, J. Rybicki, J. Suomela, and J. Uitto, “Brief announcement: Efficient load-balancing through distributed token dropping,” in 34th International Symposium on Distributed Computing, Virtual, 2020, vol. 179.","ama":"Brandt S, Keller B, Rybicki J, Suomela J, Uitto J. Brief announcement: Efficient load-balancing through distributed token dropping. In: 34th International Symposium on Distributed Computing. Vol 179. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020. doi:10.4230/LIPIcs.DISC.2020.40"},"date_published":"2020-10-07T00:00:00Z","intvolume":" 179","article_number":"40","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode","short":"CC BY (3.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)"},"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","language":[{"iso":"eng"}],"month":"10","license":"https://creativecommons.org/licenses/by/3.0/","publication":"34th International Symposium on Distributed Computing","quality_controlled":"1","article_processing_charge":"No","alternative_title":["LIPIcs"],"file_date_updated":"2024-03-05T07:08:27Z","date_updated":"2025-04-14T13:01:27Z","year":"2020","volume":179,"publication_status":"published","related_material":{"record":[{"id":"9678","relation":"later_version","status":"public"}]},"file":[{"access_level":"open_access","checksum":"23e2d9321aef53092dc1e24a8ab82d72","date_created":"2024-03-05T07:08:27Z","success":1,"creator":"dernst","file_name":"2020_LIPIcs_Brandt.pdf","relation":"main_file","file_id":"15075","content_type":"application/pdf","date_updated":"2024-03-05T07:08:27Z","file_size":303529}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"_id":"15074","oa_version":"Published Version","department":[{"_id":"DaAl"}],"external_id":{"arxiv":["2005.07761"]},"author":[{"first_name":"Sebastian","last_name":"Brandt","full_name":"Brandt, Sebastian"},{"last_name":"Keller","first_name":"Barbara","full_name":"Keller, Barbara"},{"full_name":"Rybicki, Joel","orcid":"0000-0002-6432-6646","id":"334EFD2E-F248-11E8-B48F-1D18A9856A87","first_name":"Joel","last_name":"Rybicki"},{"first_name":"Jukka","last_name":"Suomela","full_name":"Suomela, Jukka"},{"last_name":"Uitto","first_name":"Jara","full_name":"Uitto, Jara"}],"abstract":[{"text":"We introduce a new graph problem, the token dropping game, and we show how to solve it efficiently in a distributed setting. We use the token dropping game as a tool to design an efficient distributed algorithm for the stable orientation problem, which is a special case of the more general locally optimal semi-matching problem. The prior work by Czygrinow et al. (DISC 2012) finds a locally optimal semi-matching in O(Δ⁵) rounds in graphs of maximum degree Δ, which directly implies an algorithm with the same runtime for stable orientations. We improve the runtime to O(Δ⁴) for stable orientations and prove a lower bound of Ω(Δ) rounds.","lang":"eng"}]},{"acknowledgement":"The authors sincerely thank Thomas Sauerwald and George Giakkoupis for insightful discussions, and Mohsen Ghaffari, Yuval Peres, and Udi Wieder for feedback on earlier\r\nversions of this draft. We also thank the ICALP anonymous reviewers for their very useful comments.\r\nFunding: European Research Council funding award PR1042ERC01","day":"29","type":"conference","status":"public","has_accepted_license":"1","doi":"10.4230/LIPIcs.ICALP.2020.7","arxiv":1,"date_created":"2024-03-05T07:25:37Z","corr_author":"1","ddc":["000"],"scopus_import":"1","title":"Dynamic averaging load balancing on cycles","language":[{"iso":"eng"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","month":"06","publication":"47th International Colloquium on Automata, Languages, and Programming","article_processing_charge":"No","quality_controlled":"1","conference":{"name":"ICALP: Automata, Languages and Programming","end_date":"2020-07-11","location":"Saarbrücken, Germany, Virtual","start_date":"2020-07-08"},"date_published":"2020-06-29T00:00:00Z","citation":{"short":"D.-A. Alistarh, G. Nadiradze, A. Sabour, in:, 47th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020.","apa":"Alistarh, D.-A., Nadiradze, G., & Sabour, A. (2020). Dynamic averaging load balancing on cycles. In 47th International Colloquium on Automata, Languages, and Programming (Vol. 168). Saarbrücken, Germany, Virtual: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.ICALP.2020.7","ista":"Alistarh D-A, Nadiradze G, Sabour A. 2020. Dynamic averaging load balancing on cycles. 47th International Colloquium on Automata, Languages, and Programming. ICALP: Automata, Languages and Programming, LIPIcs, vol. 168, 7.","mla":"Alistarh, Dan-Adrian, et al. “Dynamic Averaging Load Balancing on Cycles.” 47th International Colloquium on Automata, Languages, and Programming, vol. 168, 7, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, doi:10.4230/LIPIcs.ICALP.2020.7.","chicago":"Alistarh, Dan-Adrian, Giorgi Nadiradze, and Amirmojtaba Sabour. “Dynamic Averaging Load Balancing on Cycles.” In 47th International Colloquium on Automata, Languages, and Programming, Vol. 168. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020. https://doi.org/10.4230/LIPIcs.ICALP.2020.7.","ieee":"D.-A. Alistarh, G. Nadiradze, and A. Sabour, “Dynamic averaging load balancing on cycles,” in 47th International Colloquium on Automata, Languages, and Programming, Saarbrücken, Germany, Virtual, 2020, vol. 168.","ama":"Alistarh D-A, Nadiradze G, Sabour A. Dynamic averaging load balancing on cycles. In: 47th International Colloquium on Automata, Languages, and Programming. Vol 168. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020. doi:10.4230/LIPIcs.ICALP.2020.7"},"article_number":"7","intvolume":" 168","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode","short":"CC BY (3.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)"},"volume":168,"year":"2020","publication_status":"published","file":[{"file_size":782987,"date_updated":"2024-03-05T07:25:15Z","file_id":"15078","content_type":"application/pdf","relation":"main_file","file_name":"2020_LIPIcs_Alistarh.pdf","creator":"dernst","success":1,"date_created":"2024-03-05T07:25:15Z","checksum":"e5eb16199f4ccfd77a321977eb3f026f","access_level":"open_access"}],"related_material":{"record":[{"status":"public","relation":"later_version","id":"8286"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","alternative_title":["LIPIcs"],"file_date_updated":"2024-03-05T07:25:15Z","date_updated":"2025-07-10T11:55:11Z","department":[{"_id":"DaAl"}],"author":[{"first_name":"Dan-Adrian","last_name":"Alistarh","orcid":"0000-0003-3650-940X","full_name":"Alistarh, Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nadiradze, Giorgi","orcid":"0000-0001-5634-0731","id":"3279A00C-F248-11E8-B48F-1D18A9856A87","first_name":"Giorgi","last_name":"Nadiradze"},{"last_name":"Sabour","first_name":"Amirmojtaba","id":"bcc145fd-e77f-11ea-ae8b-80d661dbff67","full_name":"Sabour, Amirmojtaba"}],"external_id":{"arxiv":["2003.09297"]},"abstract":[{"text":"We consider the following dynamic load-balancing process: given an underlying graph G with n nodes, in each step t≥ 0, one unit of load is created, and placed at a randomly chosen graph node. In the same step, the chosen node picks a random neighbor, and the two nodes balance their loads by averaging them. We are interested in the expected gap between the minimum and maximum loads at nodes as the process progresses, and its dependence on n and on the graph structure. Variants of the above graphical balanced allocation process have been studied previously by Peres, Talwar, and Wieder [Peres et al., 2015], and by Sauerwald and Sun [Sauerwald and Sun, 2015]. These authors left as open the question of characterizing the gap in the case of cycle graphs in the dynamic case, where weights are created during the algorithm’s execution. For this case, the only known upper bound is of 𝒪(n log n), following from a majorization argument due to [Peres et al., 2015], which analyzes a related graphical allocation process. In this paper, we provide an upper bound of 𝒪 (√n log n) on the expected gap of the above process for cycles of length n. We introduce a new potential analysis technique, which enables us to bound the difference in load between k-hop neighbors on the cycle, for any k ≤ n/2. We complement this with a \"gap covering\" argument, which bounds the maximum value of the gap by bounding its value across all possible subsets of a certain structure, and recursively bounding the gaps within each subset. We provide analytical and experimental evidence that our upper bound on the gap is tight up to a logarithmic factor.","lang":"eng"}],"oa":1,"project":[{"name":"Elastic Coordination for Scalable Machine Learning","grant_number":"805223","_id":"268A44D6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"_id":"15077","ec_funded":1,"oa_version":"Published Version"},{"publication_identifier":{"issn":["1660-8933"]},"title":"Random matrices","issue":"4","date_updated":"2024-03-12T12:25:18Z","publication_status":"published","day":"19","type":"journal_article","volume":16,"year":"2020","doi":"10.4171/owr/2019/56","date_created":"2024-03-05T07:54:44Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","citation":{"short":"L. Erdös, F. Götze, A. Guionnet, Oberwolfach Reports 16 (2020) 3459–3527.","apa":"Erdös, L., Götze, F., & Guionnet, A. (2020). Random matrices. Oberwolfach Reports. European Mathematical Society. https://doi.org/10.4171/owr/2019/56","ista":"Erdös L, Götze F, Guionnet A. 2020. Random matrices. Oberwolfach Reports. 16(4), 3459–3527.","mla":"Erdös, László, et al. “Random Matrices.” Oberwolfach Reports, vol. 16, no. 4, European Mathematical Society, 2020, pp. 3459–527, doi:10.4171/owr/2019/56.","ieee":"L. Erdös, F. Götze, and A. Guionnet, “Random matrices,” Oberwolfach Reports, vol. 16, no. 4. European Mathematical Society, pp. 3459–3527, 2020.","chicago":"Erdös, László, Friedrich Götze, and Alice Guionnet. “Random Matrices.” Oberwolfach Reports. European Mathematical Society, 2020. https://doi.org/10.4171/owr/2019/56.","ama":"Erdös L, Götze F, Guionnet A. Random matrices. Oberwolfach Reports. 2020;16(4):3459-3527. doi:10.4171/owr/2019/56"},"date_published":"2020-11-19T00:00:00Z","page":"3459-3527","article_type":"original","oa_version":"None","_id":"15079","intvolume":" 16","month":"11","department":[{"_id":"LaEr"}],"publisher":"European Mathematical Society","language":[{"iso":"eng"}],"quality_controlled":"1","abstract":[{"text":"Large complex systems tend to develop universal patterns that often represent their essential characteristics. For example, the cumulative effects of independent or weakly dependent random variables often yield the Gaussian universality class via the central limit theorem. For non-commutative random variables, e.g. matrices, the Gaussian behavior is often replaced by another universality class, commonly called random matrix statistics. Nearby eigenvalues are strongly correlated, and, remarkably, their correlation structure is universal, depending only on the symmetry type of the matrix. Even more surprisingly, this feature is not restricted to matrices; in fact Eugene Wigner, the pioneer of the field, discovered in the 1950s that distributions of the gaps between energy levels of complicated quantum systems universally follow the same random matrix statistics. This claim has never been rigorously proved for any realistic physical system but experimental data and extensive numerics leave no doubt as to its correctness. Since then random matrices have proved to be extremely useful phenomenological models in a wide range of applications beyond quantum physics that include number theory, statistics, neuroscience, population dynamics, wireless communication and mathematical finance. The ubiquity of random matrices in natural sciences is still a mystery, but recent years have witnessed a breakthrough in the mathematical description of the statistical structure of their spectrum. Random matrices and closely related areas such as log-gases have become an extremely active research area in probability theory.\r\nThis workshop brought together outstanding researchers from a variety of mathematical backgrounds whose areas of research are linked to random matrices. While there are strong links between their motivations, the techniques used by these researchers span a large swath of mathematics, ranging from purely algebraic techniques to stochastic analysis, classical probability theory, operator algebra, supersymmetry, orthogonal polynomials, etc.","lang":"eng"}],"article_processing_charge":"No","publication":"Oberwolfach Reports","author":[{"last_name":"Erdös","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","full_name":"Erdös, László"},{"full_name":"Götze, Friedrich","last_name":"Götze","first_name":"Friedrich"},{"full_name":"Guionnet, Alice","first_name":"Alice","last_name":"Guionnet"}]},{"main_file_link":[{"open_access":"1","url":"https://www1.pub.informatik.uni-wuerzburg.de/eurocg2020/data/uploads/papers/eurocg20_paper_56.pdf"}],"date_created":"2024-03-05T08:57:17Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","type":"conference","day":"01","publication_status":"published","acknowledgement":"Research on this work was initiated at the 6th Austrian-Japanese-Mexican-Spanish Workshop on Discrete Geometry and continued during the 16th European Geometric Graph-Week, both held near Strobl, Austria. We are grateful to the participants for the inspiring atmosphere. We especially thank Alexander Pilz for bringing this class of problems to our attention and Birgit Vogtenhuber for inspiring discussions. D.P. is partially supported by the FWF grant I 3340-N35 (Collaborative DACH project Arrangements and Drawings). The research stay of P.P. at IST Austria is funded by the project CZ.02.2.69/0.0/0.0/17_050/0008466 Improvement of internationalization in the field of research and development at Charles University, through the support of quality projects MSCA-IF. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 734922.","year":"2020","title":"Disjoint tree-compatible plane perfect matchings","date_updated":"2026-06-18T17:45:52Z","corr_author":"1","ddc":["000"],"abstract":[{"lang":"eng","text":"Two plane drawings of geometric graphs on the same set of points are called disjoint compatible if their union is plane and they do not have an edge in common. For a given set S of 2n points two plane drawings of perfect matchings M1 and M2 (which do not need to be disjoint nor compatible) are disjoint tree-compatible if there exists a plane drawing of a spanning tree T on S which is disjoint compatible to both M1 and M2.\r\nWe show that the graph of all disjoint tree-compatible perfect geometric matchings on 2n points in convex position is connected if and only if 2n ≥ 10. Moreover, in that case the diameter\r\nof this graph is either 4 or 5, independent of n."}],"article_processing_charge":"No","quality_controlled":"1","author":[{"full_name":"Aichholzer, Oswin","last_name":"Aichholzer","first_name":"Oswin"},{"full_name":"Obmann, Julia","first_name":"Julia","last_name":"Obmann"},{"last_name":"Patak","first_name":"Pavel","id":"B593B804-1035-11EA-B4F1-947645A5BB83","full_name":"Patak, Pavel"},{"full_name":"Perz, Daniel","last_name":"Perz","first_name":"Daniel"},{"id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1097-9684","full_name":"Tkadlec, Josef","last_name":"Tkadlec","first_name":"Josef"}],"publication":"36th European Workshop on Computational Geometry","department":[{"_id":"KrCh"},{"_id":"UlWa"}],"month":"04","language":[{"iso":"eng"}],"oa_version":"Published Version","article_number":"56","_id":"15082","date_published":"2020-04-01T00:00:00Z","citation":{"mla":"Aichholzer, Oswin, et al. “Disjoint Tree-Compatible Plane Perfect Matchings.” 36th European Workshop on Computational Geometry, 56, 2020.","ieee":"O. Aichholzer, J. Obmann, P. Patak, D. Perz, and J. Tkadlec, “Disjoint tree-compatible plane perfect matchings,” in 36th European Workshop on Computational Geometry, Würzburg, Germany, Virtual, 2020.","chicago":"Aichholzer, Oswin, Julia Obmann, Pavel Patak, Daniel Perz, and Josef Tkadlec. “Disjoint Tree-Compatible Plane Perfect Matchings.” In 36th European Workshop on Computational Geometry, 2020.","ama":"Aichholzer O, Obmann J, Patak P, Perz D, Tkadlec J. Disjoint tree-compatible plane perfect matchings. In: 36th European Workshop on Computational Geometry. ; 2020.","short":"O. Aichholzer, J. Obmann, P. Patak, D. Perz, J. Tkadlec, in:, 36th European Workshop on Computational Geometry, 2020.","apa":"Aichholzer, O., Obmann, J., Patak, P., Perz, D., & Tkadlec, J. (2020). Disjoint tree-compatible plane perfect matchings. In 36th European Workshop on Computational Geometry. Würzburg, Germany, Virtual.","ista":"Aichholzer O, Obmann J, Patak P, Perz D, Tkadlec J. 2020. Disjoint tree-compatible plane perfect matchings. 36th European Workshop on Computational Geometry. EuroCG: European Workshop on Computational Geometry, 56."},"oa":1,"conference":{"location":"Würzburg, Germany, Virtual","start_date":"2020-03-16","name":"EuroCG: European Workshop on Computational Geometry","end_date":"2020-03-18"}},{"publication_identifier":{"isbn":["9781713829546"]},"title":"Adaptive gradient quantization for data-parallel SGD","acknowledgement":"The authors would like to thank Blair Bilodeau, David Fleet, Mufan Li, and Jeffrey Negrea for\r\nhelpful discussions. FF was supported by OGS Scholarship. DA and IM were supported the\r\nEuropean Research Council (ERC) under the European Union’s Horizon 2020 research and innovation\r\nprogramme (grant agreement No 805223 ScaleML). DMR was supported by an NSERC Discovery\r\nGrant. ARK was supported by NSERC Postdoctoral Fellowship. Resources used in preparing this research were provided, in part, by the Province of Ontario, the Government of Canada through CIFAR, and companies sponsoring the Vector Institute.","day":"10","type":"conference","status":"public","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2010.12460","open_access":"1"}],"date_created":"2024-03-06T08:35:58Z","arxiv":1,"conference":{"end_date":"2020-12-12","name":"NeurIPS: Neural Information Processing Systems","location":"Vancouver, Canada","start_date":"2020-12-06"},"citation":{"mla":"Faghri, Fartash, et al. “Adaptive Gradient Quantization for Data-Parallel SGD.” Advances in Neural Information Processing Systems, vol. 33, Neural Information Processing Systems Foundation, 2020.","ama":"Faghri F, Tabrizian I, Markov I, Alistarh D-A, Roy D, Ramezani-Kebrya A. Adaptive gradient quantization for data-parallel SGD. In: Advances in Neural Information Processing Systems. Vol 33. Neural Information Processing Systems Foundation; 2020.","chicago":"Faghri, Fartash , Iman Tabrizian, Ilia Markov, Dan-Adrian Alistarh, Daniel Roy, and Ali Ramezani-Kebrya. “Adaptive Gradient Quantization for Data-Parallel SGD.” In Advances in Neural Information Processing Systems, Vol. 33. Neural Information Processing Systems Foundation, 2020.","ieee":"F. Faghri, I. Tabrizian, I. Markov, D.-A. Alistarh, D. Roy, and A. Ramezani-Kebrya, “Adaptive gradient quantization for data-parallel SGD,” in Advances in Neural Information Processing Systems, Vancouver, Canada, 2020, vol. 33.","short":"F. Faghri, I. Tabrizian, I. Markov, D.-A. Alistarh, D. Roy, A. Ramezani-Kebrya, in:, Advances in Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2020.","ista":"Faghri F, Tabrizian I, Markov I, Alistarh D-A, Roy D, Ramezani-Kebrya A. 2020. Adaptive gradient quantization for data-parallel SGD. Advances in Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems, NeurIPS, vol. 33.","apa":"Faghri, F., Tabrizian, I., Markov, I., Alistarh, D.-A., Roy, D., & Ramezani-Kebrya, A. (2020). Adaptive gradient quantization for data-parallel SGD. In Advances in Neural Information Processing Systems (Vol. 33). Vancouver, Canada: Neural Information Processing Systems Foundation."},"date_published":"2020-12-10T00:00:00Z","intvolume":" 33","publisher":"Neural Information Processing Systems Foundation","language":[{"iso":"eng"}],"month":"12","publication":"Advances in Neural Information Processing Systems","quality_controlled":"1","article_processing_charge":"No","alternative_title":["NeurIPS"],"date_updated":"2025-04-14T07:49:16Z","year":"2020","volume":33,"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"project":[{"grant_number":"805223","_id":"268A44D6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Elastic Coordination for Scalable Machine Learning"}],"_id":"15086","ec_funded":1,"oa_version":"Preprint","department":[{"_id":"DaAl"}],"external_id":{"arxiv":["2010.12460"]},"author":[{"full_name":"Faghri, Fartash ","last_name":"Faghri","first_name":"Fartash "},{"last_name":"Tabrizian","first_name":"Iman ","full_name":"Tabrizian, Iman "},{"full_name":"Markov, Ilia","id":"D0CF4148-C985-11E9-8066-0BDEE5697425","first_name":"Ilia","last_name":"Markov"},{"full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","first_name":"Dan-Adrian","last_name":"Alistarh"},{"first_name":"Daniel ","last_name":"Roy","full_name":"Roy, Daniel "},{"full_name":"Ramezani-Kebrya, Ali ","last_name":"Ramezani-Kebrya","first_name":"Ali "}],"abstract":[{"lang":"eng","text":"Many communication-efficient variants of SGD use gradient quantization schemes. These schemes are often heuristic and fixed over the course of training. We empirically observe that the statistics of gradients of deep models change during the training. Motivated by this observation, we introduce two adaptive quantization schemes, ALQ and AMQ. In both schemes, processors update their compression schemes in parallel by efficiently computing sufficient statistics of a parametric distribution. We improve the validation accuracy by almost 2% on CIFAR-10 and 1% on ImageNet in challenging low-cost communication setups. Our adaptive methods are also significantly more robust to the choice of hyperparameters.\r\n\r\n"}]},{"issue":"S2","title":"Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration","keyword":["Instrumentation"],"date_updated":"2024-10-09T21:08:43Z","publication_identifier":{"eissn":["1435-8115"],"issn":["1431-9276"]},"corr_author":"1","date_created":"2024-04-03T09:40:11Z","doi":"10.1017/s1431927620021881","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_status":"published","day":"01","type":"journal_article","volume":26,"year":"2020","oa_version":"None","intvolume":" 26","_id":"15286","citation":{"short":"F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, B. Zens, C. Möhl, F. Bradke, F.K. Schur, Microscopy and Microanalysis 26 (2020) 2518–2519.","ista":"Fäßler F, Dimchev GA, Hodirnau V-V, Zens B, Möhl C, Bradke F, Schur FK. 2020. Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration. Microscopy and Microanalysis. 26(S2), 2518–2519.","apa":"Fäßler, F., Dimchev, G. A., Hodirnau, V.-V., Zens, B., Möhl, C., Bradke, F., & Schur, F. K. (2020). Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration. Microscopy and Microanalysis. Oxford University Press. https://doi.org/10.1017/s1431927620021881","mla":"Fäßler, Florian, et al. “Cryo-Electron Tomography Workflows for Quantitative Analysis of Actin Networks Involved in Cell Migration.” Microscopy and Microanalysis, vol. 26, no. S2, Oxford University Press, 2020, pp. 2518–19, doi:10.1017/s1431927620021881.","ieee":"F. Fäßler et al., “Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration,” Microscopy and Microanalysis, vol. 26, no. S2. Oxford University Press, pp. 2518–2519, 2020.","chicago":"Fäßler, Florian, Georgi A Dimchev, Victor-Valentin Hodirnau, Bettina Zens, Christoph Möhl, Frank Bradke, and Florian KM Schur. “Cryo-Electron Tomography Workflows for Quantitative Analysis of Actin Networks Involved in Cell Migration.” Microscopy and Microanalysis. Oxford University Press, 2020. https://doi.org/10.1017/s1431927620021881.","ama":"Fäßler F, Dimchev GA, Hodirnau V-V, et al. Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration. Microscopy and Microanalysis. 2020;26(S2):2518-2519. doi:10.1017/s1431927620021881"},"date_published":"2020-08-01T00:00:00Z","page":"2518-2519","article_type":"original","quality_controlled":"1","article_processing_charge":"No","publication":"Microscopy and Microanalysis","author":[{"last_name":"Fäßler","first_name":"Florian","id":"404F5528-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7149-769X","full_name":"Fäßler, Florian"},{"full_name":"Dimchev, Georgi A","orcid":"0000-0001-8370-6161","id":"38C393BE-F248-11E8-B48F-1D18A9856A87","first_name":"Georgi A","last_name":"Dimchev"},{"full_name":"Hodirnau, Victor-Valentin","orcid":"0000-0003-3904-947X","id":"3661B498-F248-11E8-B48F-1D18A9856A87","first_name":"Victor-Valentin","last_name":"Hodirnau"},{"last_name":"Zens","first_name":"Bettina","id":"45FD126C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9561-1239","full_name":"Zens, Bettina"},{"first_name":"Christoph","last_name":"Möhl","full_name":"Möhl, Christoph"},{"last_name":"Bradke","first_name":"Frank","full_name":"Bradke, Frank"},{"orcid":"0000-0003-4790-8078","full_name":"Schur, Florian KM","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","first_name":"Florian KM","last_name":"Schur"}],"department":[{"_id":"FlSc"},{"_id":"EM-Fac"}],"month":"08","publisher":"Oxford University Press","language":[{"iso":"eng"}]},{"department":[{"_id":"JoFi"}],"month":"07","publisher":"Zenodo","article_processing_charge":"No","abstract":[{"lang":"eng","text":"This datasets comprises all data shown in plots of the submitted article \"Converting microwave and telecom photons with a silicon photonic nanomechanical interface\". Additional raw data are available from the corresponding author on reasonable request."}],"author":[{"orcid":"0000-0003-1397-7876","full_name":"Arnold, Georg M","id":"3770C838-F248-11E8-B48F-1D18A9856A87","first_name":"Georg M","last_name":"Arnold"},{"last_name":"Wulf","first_name":"Matthias","id":"45598606-F248-11E8-B48F-1D18A9856A87","full_name":"Wulf, Matthias","orcid":"0000-0001-6613-1378"},{"last_name":"Barzanjeh","first_name":"Shabir","id":"2D25E1F6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0415-1423","full_name":"Barzanjeh, Shabir"},{"first_name":"Elena","last_name":"Redchenko","full_name":"Redchenko, Elena","id":"2C21D6E8-F248-11E8-B48F-1D18A9856A87"},{"id":"3B82B0F8-F248-11E8-B48F-1D18A9856A87","full_name":"Rueda Sanchez, Alfredo R","orcid":"0000-0001-6249-5860","last_name":"Rueda Sanchez","first_name":"Alfredo R"},{"id":"29705398-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9868-2166","full_name":"Hease, William J","last_name":"Hease","first_name":"William J"},{"last_name":"Hassani","first_name":"Farid","id":"2AED110C-F248-11E8-B48F-1D18A9856A87","full_name":"Hassani, Farid","orcid":"0000-0001-6937-5773"},{"orcid":"0000-0001-8112-028X","full_name":"Fink, Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M","last_name":"Fink"}],"date_published":"2020-07-27T00:00:00Z","citation":{"ista":"Arnold GM, Wulf M, Barzanjeh S, Redchenko E, Rueda Sanchez AR, Hease WJ, Hassani F, Fink JM. 2020. Converting microwave and telecom photons with a silicon photonic nanomechanical interface, Zenodo, 10.5281/ZENODO.3961561.","apa":"Arnold, G. M., Wulf, M., Barzanjeh, S., Redchenko, E., Rueda Sanchez, A. R., Hease, W. J., … Fink, J. M. (2020). Converting microwave and telecom photons with a silicon photonic nanomechanical interface. Zenodo. https://doi.org/10.5281/ZENODO.3961561","short":"G.M. Arnold, M. Wulf, S. Barzanjeh, E. Redchenko, A.R. Rueda Sanchez, W.J. Hease, F. Hassani, J.M. Fink, (2020).","chicago":"Arnold, Georg M, Matthias Wulf, Shabir Barzanjeh, Elena Redchenko, Alfredo R Rueda Sanchez, William J Hease, Farid Hassani, and Johannes M Fink. “Converting Microwave and Telecom Photons with a Silicon Photonic Nanomechanical Interface.” Zenodo, 2020. https://doi.org/10.5281/ZENODO.3961561.","ieee":"G. M. Arnold et al., “Converting microwave and telecom photons with a silicon photonic nanomechanical interface.” Zenodo, 2020.","ama":"Arnold GM, Wulf M, Barzanjeh S, et al. Converting microwave and telecom photons with a silicon photonic nanomechanical interface. 2020. doi:10.5281/ZENODO.3961561","mla":"Arnold, Georg M., et al. Converting Microwave and Telecom Photons with a Silicon Photonic Nanomechanical Interface. Zenodo, 2020, doi:10.5281/ZENODO.3961561."},"oa":1,"oa_version":"Published Version","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"13056","type":"research_data_reference","day":"27","year":"2020","doi":"10.5281/ZENODO.3961561","date_created":"2023-05-23T13:37:41Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.3961562"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"8529"}]},"status":"public","ddc":["530"],"corr_author":"1","title":"Converting microwave and telecom photons with a silicon photonic nanomechanical interface","date_updated":"2025-06-12T07:03:01Z"},{"date_updated":"2025-06-12T07:32:35Z","title":"Social immunity modulates competition between coinfecting pathogens","corr_author":"1","ddc":["570"],"status":"public","related_material":{"record":[{"id":"7343","relation":"used_in_publication","status":"public"}]},"doi":"10.5061/DRYAD.CRJDFN318","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.crjdfn318"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2023-05-23T16:11:22Z","year":"2020","type":"research_data_reference","day":"19","_id":"13060","tmp":{"image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)"},"oa_version":"Published Version","citation":{"ista":"Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020. Social immunity modulates competition between coinfecting pathogens, Dryad, 10.5061/DRYAD.CRJDFN318.","apa":"Milutinovic, B., Stock, M., Grasse, A. V., Naderlinger, E., Hilbe, C., & Cremer, S. (2020). Social immunity modulates competition between coinfecting pathogens. Dryad. https://doi.org/10.5061/DRYAD.CRJDFN318","short":"B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer, (2020).","ama":"Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social immunity modulates competition between coinfecting pathogens. 2020. doi:10.5061/DRYAD.CRJDFN318","chicago":"Milutinovic, Barbara, Miriam Stock, Anna V Grasse, Elisabeth Naderlinger, Christian Hilbe, and Sylvia Cremer. “Social Immunity Modulates Competition between Coinfecting Pathogens.” Dryad, 2020. https://doi.org/10.5061/DRYAD.CRJDFN318.","ieee":"B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer, “Social immunity modulates competition between coinfecting pathogens.” Dryad, 2020.","mla":"Milutinovic, Barbara, et al. Social Immunity Modulates Competition between Coinfecting Pathogens. Dryad, 2020, doi:10.5061/DRYAD.CRJDFN318."},"oa":1,"date_published":"2020-12-19T00:00:00Z","author":[{"orcid":"0000-0002-8214-4758","full_name":"Milutinovic, Barbara","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara","last_name":"Milutinovic"},{"last_name":"Stock","first_name":"Miriam","id":"42462816-F248-11E8-B48F-1D18A9856A87","full_name":"Stock, Miriam"},{"id":"406F989C-F248-11E8-B48F-1D18A9856A87","full_name":"Grasse, Anna V","last_name":"Grasse","first_name":"Anna V"},{"full_name":"Naderlinger, Elisabeth","id":"31757262-F248-11E8-B48F-1D18A9856A87","first_name":"Elisabeth","last_name":"Naderlinger"},{"last_name":"Hilbe","first_name":"Christian","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5116-955X","full_name":"Hilbe, Christian"},{"orcid":"0000-0002-2193-3868","full_name":"Cremer, Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia","last_name":"Cremer"}],"abstract":[{"text":"Coinfections with multiple pathogens can result in complex within-host dynamics affecting virulence and transmission. Whilst multiple infections are intensively studied in solitary hosts, it is so far unresolved how social host interactions interfere with pathogen competition, and if this depends on coinfection diversity. We studied how the collective disease defenses of ants – their social immunity – influence pathogen competition in coinfections of same or different fungal pathogen species. Social immunity reduced virulence for all pathogen combinations, but interfered with spore production only in different-species coinfections. Here, it decreased overall pathogen sporulation success, whilst simultaneously increasing co-sporulation on individual cadavers and maintaining a higher pathogen diversity at the community-level. Mathematical modeling revealed that host sanitary care alone can modulate competitive outcomes between pathogens, giving advantage to fast-germinating, thus less grooming-sensitive ones. Host social interactions can hence modulate infection dynamics in coinfected group members, thereby altering pathogen communities at the host- and population-level.","lang":"eng"}],"article_processing_charge":"No","publisher":"Dryad","month":"12","department":[{"_id":"SyCr"},{"_id":"KrCh"}],"license":"https://creativecommons.org/publicdomain/zero/1.0/"},{"article_processing_charge":"No","abstract":[{"text":"Domestication is a human-induced selection process that imprints the genomes of domesticated populations over a short evolutionary time scale, and that occurs in a given demographic context. Reconstructing historical gene flow, effective population size changes and their timing is therefore of fundamental interest to understand how plant demography and human selection jointly shape genomic divergence during domestication. Yet, the comparison under a single statistical framework of independent domestication histories across different crop species has been little evaluated so far. Thus, it is unclear whether domestication leads to convergent demographic changes that similarly affect crop genomes. To address this question, we used existing and new transcriptome data on three crop species of Solanaceae (eggplant, pepper and tomato), together with their close wild relatives. We fitted twelve demographic models of increasing complexity on the unfolded joint allele frequency spectrum for each wild/crop pair, and we found evidence for both shared and species-specific demographic processes between species. A convergent history of domestication with gene-flow was inferred for all three species, along with evidence of strong reduction in the effective population size during the cultivation stage of tomato and pepper. The absence of any reduction in size of the crop in eggplant stands out from the classical view of the domestication process; as does the existence of a “protracted period” of management before cultivation. Our results also suggest divergent management strategies of modern cultivars among species as their current demography substantially differs. Finally, the timing of domestication is species-specific and supported by the few historical records available.","lang":"eng"}],"author":[{"last_name":"Arnoux","first_name":"Stephanie","full_name":"Arnoux, Stephanie"},{"last_name":"Fraisse","first_name":"Christelle","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","full_name":"Fraisse, Christelle","orcid":"0000-0001-8441-5075"},{"full_name":"Sauvage, Christopher","first_name":"Christopher","last_name":"Sauvage"}],"department":[{"_id":"NiBa"}],"month":"10","publisher":"Dryad","oa_version":"Published Version","tmp":{"image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)"},"_id":"13065","oa":1,"citation":{"mla":"Arnoux, Stephanie, et al. VCF Files of Synonymous SNPs Related to: Genomic Inference of Complex Domestication Histories in Three Solanaceae Species. Dryad, 2020, doi:10.5061/DRYAD.Q2BVQ83HD.","chicago":"Arnoux, Stephanie, Christelle Fraisse, and Christopher Sauvage. “VCF Files of Synonymous SNPs Related to: Genomic Inference of Complex Domestication Histories in Three Solanaceae Species.” Dryad, 2020. https://doi.org/10.5061/DRYAD.Q2BVQ83HD.","ieee":"S. Arnoux, C. Fraisse, and C. Sauvage, “VCF files of synonymous SNPs related to: Genomic inference of complex domestication histories in three Solanaceae species.” Dryad, 2020.","ama":"Arnoux S, Fraisse C, Sauvage C. VCF files of synonymous SNPs related to: Genomic inference of complex domestication histories in three Solanaceae species. 2020. doi:10.5061/DRYAD.Q2BVQ83HD","short":"S. Arnoux, C. Fraisse, C. Sauvage, (2020).","apa":"Arnoux, S., Fraisse, C., & Sauvage, C. (2020). VCF files of synonymous SNPs related to: Genomic inference of complex domestication histories in three Solanaceae species. Dryad. https://doi.org/10.5061/DRYAD.Q2BVQ83HD","ista":"Arnoux S, Fraisse C, Sauvage C. 2020. VCF files of synonymous SNPs related to: Genomic inference of complex domestication histories in three Solanaceae species, Dryad, 10.5061/DRYAD.Q2BVQ83HD."},"date_published":"2020-10-19T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.5061/dryad.q2bvq83hd","open_access":"1"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.5061/DRYAD.Q2BVQ83HD","date_created":"2023-05-23T16:30:20Z","status":"public","related_material":{"record":[{"id":"8928","relation":"used_in_publication","status":"public"}],"link":[{"relation":"software","url":"https://github.com/starnoux/arnoux_et_al_2019"}]},"type":"research_data_reference","day":"19","year":"2020","title":"VCF files of synonymous SNPs related to: Genomic inference of complex domestication histories in three Solanaceae species","date_updated":"2026-06-18T19:37:16Z","ddc":["570"]},{"date_updated":"2026-04-15T06:43:02Z","title":"Surpassing the resistance quantum with a geometric superinductor","ddc":["530"],"corr_author":"1","status":"public","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"8755"}]},"date_created":"2023-05-23T16:42:30Z","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.4052883","open_access":"1"}],"doi":"10.5281/ZENODO.4052882","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2020","day":"27","type":"research_data_reference","_id":"13070","oa_version":"Published Version","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"ama":"Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. Surpassing the resistance quantum with a geometric superinductor. 2020. doi:10.5281/ZENODO.4052882","chicago":"Peruzzo, Matilda, Andrea Trioni, Farid Hassani, Martin Zemlicka, and Johannes M Fink. “Surpassing the Resistance Quantum with a Geometric Superinductor.” Zenodo, 2020. https://doi.org/10.5281/ZENODO.4052882.","ieee":"M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, and J. M. Fink, “Surpassing the resistance quantum with a geometric superinductor.” Zenodo, 2020.","mla":"Peruzzo, Matilda, et al. Surpassing the Resistance Quantum with a Geometric Superinductor. Zenodo, 2020, doi:10.5281/ZENODO.4052882.","ista":"Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. 2020. Surpassing the resistance quantum with a geometric superinductor, Zenodo, 10.5281/ZENODO.4052882.","apa":"Peruzzo, M., Trioni, A., Hassani, F., Zemlicka, M., & Fink, J. M. (2020). Surpassing the resistance quantum with a geometric superinductor. Zenodo. https://doi.org/10.5281/ZENODO.4052882","short":"M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, J.M. Fink, (2020)."},"oa":1,"date_published":"2020-09-27T00:00:00Z","author":[{"orcid":"0000-0002-3415-4628","full_name":"Peruzzo, Matilda","id":"3F920B30-F248-11E8-B48F-1D18A9856A87","first_name":"Matilda","last_name":"Peruzzo"},{"last_name":"Trioni","first_name":"Andrea","id":"42F71B44-F248-11E8-B48F-1D18A9856A87","full_name":"Trioni, Andrea"},{"first_name":"Farid","last_name":"Hassani","full_name":"Hassani, Farid","orcid":"0000-0001-6937-5773","id":"2AED110C-F248-11E8-B48F-1D18A9856A87"},{"id":"2DCF8DE6-F248-11E8-B48F-1D18A9856A87","orcid":"0009-0005-0878-3032","full_name":"Zemlicka, Martin","last_name":"Zemlicka","first_name":"Martin"},{"id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","full_name":"Fink, Johannes M","last_name":"Fink","first_name":"Johannes M"}],"abstract":[{"lang":"eng","text":"This dataset comprises all data shown in the figures of the submitted article \"Surpassing the resistance quantum with a geometric superinductor\". Additional raw data are available from the corresponding author on reasonable request."}],"article_processing_charge":"No","publisher":"Zenodo","month":"09","department":[{"_id":"JoFi"}]},{"ddc":["530"],"corr_author":"1","title":"Bidirectional electro-optic wavelength conversion in the quantum ground state","date_updated":"2026-04-15T06:43:26Z","type":"research_data_reference","day":"10","year":"2020","date_created":"2023-05-23T16:44:11Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.5281/ZENODO.4266025","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.4266026"}],"status":"public","related_material":{"record":[{"id":"9114","relation":"used_in_publication","status":"public"}]},"date_published":"2020-11-10T00:00:00Z","oa":1,"citation":{"short":"W.J. Hease, A.R. Rueda Sanchez, R. Sahu, M. Wulf, G.M. Arnold, H. Schwefel, J.M. Fink, (2020).","ista":"Hease WJ, Rueda Sanchez AR, Sahu R, Wulf M, Arnold GM, Schwefel H, Fink JM. 2020. Bidirectional electro-optic wavelength conversion in the quantum ground state, Zenodo, 10.5281/ZENODO.4266025.","apa":"Hease, W. J., Rueda Sanchez, A. R., Sahu, R., Wulf, M., Arnold, G. M., Schwefel, H., & Fink, J. M. (2020). Bidirectional electro-optic wavelength conversion in the quantum ground state. Zenodo. https://doi.org/10.5281/ZENODO.4266025","mla":"Hease, William J., et al. Bidirectional Electro-Optic Wavelength Conversion in the Quantum Ground State. Zenodo, 2020, doi:10.5281/ZENODO.4266025.","ama":"Hease WJ, Rueda Sanchez AR, Sahu R, et al. Bidirectional electro-optic wavelength conversion in the quantum ground state. 2020. doi:10.5281/ZENODO.4266025","ieee":"W. J. Hease et al., “Bidirectional electro-optic wavelength conversion in the quantum ground state.” Zenodo, 2020.","chicago":"Hease, William J, Alfredo R Rueda Sanchez, Rishabh Sahu, Matthias Wulf, Georg M Arnold, Harald Schwefel, and Johannes M Fink. “Bidirectional Electro-Optic Wavelength Conversion in the Quantum Ground State.” Zenodo, 2020. https://doi.org/10.5281/ZENODO.4266025."},"oa_version":"Published Version","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"13071","department":[{"_id":"JoFi"}],"month":"11","publisher":"Zenodo","abstract":[{"text":"This dataset comprises all data shown in the plots of the main part of the submitted article \"Bidirectional Electro-Optic Wavelength Conversion in the Quantum Ground State\". Additional raw data are available from the corresponding author on reasonable request.","lang":"eng"}],"article_processing_charge":"No","author":[{"last_name":"Hease","first_name":"William J","id":"29705398-F248-11E8-B48F-1D18A9856A87","full_name":"Hease, William J","orcid":"0000-0001-9868-2166"},{"first_name":"Alfredo R","last_name":"Rueda Sanchez","orcid":"0000-0001-6249-5860","full_name":"Rueda Sanchez, Alfredo R","id":"3B82B0F8-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Sahu","first_name":"Rishabh","id":"47D26E34-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6264-2162","full_name":"Sahu, Rishabh"},{"orcid":"0000-0001-6613-1378","full_name":"Wulf, Matthias","id":"45598606-F248-11E8-B48F-1D18A9856A87","first_name":"Matthias","last_name":"Wulf"},{"full_name":"Arnold, Georg M","orcid":"0000-0003-1397-7876","id":"3770C838-F248-11E8-B48F-1D18A9856A87","first_name":"Georg M","last_name":"Arnold"},{"full_name":"Schwefel, Harald","last_name":"Schwefel","first_name":"Harald"},{"first_name":"Johannes M","last_name":"Fink","orcid":"0000-0001-8112-028X","full_name":"Fink, Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87"}]},{"tmp":{"image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)"},"oa_version":"Published Version","_id":"13073","date_published":"2020-09-22T00:00:00Z","citation":{"ista":"Simon A, Fraisse C, El Ayari T, Liautard-Haag C, Strelkov P, Welch J, Bierne N. 2020. How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels, Dryad, 10.5061/DRYAD.R4XGXD29N.","apa":"Simon, A., Fraisse, C., El Ayari, T., Liautard-Haag, C., Strelkov, P., Welch, J., & Bierne, N. (2020). How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels. Dryad. https://doi.org/10.5061/DRYAD.R4XGXD29N","short":"A. Simon, C. Fraisse, T. El Ayari, C. Liautard-Haag, P. Strelkov, J. Welch, N. Bierne, (2020).","chicago":"Simon, Alexis, Christelle Fraisse, Tahani El Ayari, Cathy Liautard-Haag, Petr Strelkov, John Welch, and Nicolas Bierne. “How Do Species Barriers Decay? Concordance and Local Introgression in Mosaic Hybrid Zones of Mussels.” Dryad, 2020. https://doi.org/10.5061/DRYAD.R4XGXD29N.","ieee":"A. Simon et al., “How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels.” Dryad, 2020.","ama":"Simon A, Fraisse C, El Ayari T, et al. How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels. 2020. doi:10.5061/DRYAD.R4XGXD29N","mla":"Simon, Alexis, et al. How Do Species Barriers Decay? Concordance and Local Introgression in Mosaic Hybrid Zones of Mussels. Dryad, 2020, doi:10.5061/DRYAD.R4XGXD29N."},"oa":1,"article_processing_charge":"No","abstract":[{"lang":"eng","text":"The Mytilus complex of marine mussel species forms a mosaic of hybrid zones, found across temperate regions of the globe. This allows us to study \"replicated\" instances of secondary contact between closely-related species. Previous work on this complex has shown that local introgression is both widespread and highly heterogeneous, and has identified SNPs that are outliers of differentiation between lineages. Here, we developed an ancestry-informative panel of such SNPs. We then compared their frequencies in newly-sampled populations, including samples from within the hybrid zones, and parental populations at different distances from the contact. Results show that close to the hybrid zones, some outlier loci are near to fixation for the heterospecific allele, suggesting enhanced local introgression, or the local sweep of a shared ancestral allele. Conversely, genomic cline analyses, treating local parental populations as the reference, reveal a globally high concordance among loci, albeit with a few signals of asymmetric introgression. Enhanced local introgression at specific loci is consistent with the early transfer of adaptive variants after contact, possibly including asymmetric bi-stable variants (Dobzhansky-Muller incompatibilities), or haplotypes loaded with fewer deleterious mutations. Having escaped one barrier, however, these variants can be trapped or delayed at the next barrier, confining the introgression locally. These results shed light on the decay of species barriers during phases of contact."}],"author":[{"last_name":"Simon","first_name":"Alexis","full_name":"Simon, Alexis"},{"last_name":"Fraisse","first_name":"Christelle","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8441-5075","full_name":"Fraisse, Christelle"},{"full_name":"El Ayari, Tahani","first_name":"Tahani","last_name":"El Ayari"},{"full_name":"Liautard-Haag, Cathy","first_name":"Cathy","last_name":"Liautard-Haag"},{"first_name":"Petr","last_name":"Strelkov","full_name":"Strelkov, Petr"},{"first_name":"John","last_name":"Welch","full_name":"Welch, John"},{"full_name":"Bierne, Nicolas","last_name":"Bierne","first_name":"Nicolas"}],"department":[{"_id":"NiBa"}],"month":"09","publisher":"Dryad","title":"How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels","date_updated":"2025-07-10T12:01:22Z","ddc":["570"],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.r4xgxd29n"}],"doi":"10.5061/DRYAD.R4XGXD29N","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2023-05-23T16:48:27Z","status":"public","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"8708"}]},"type":"research_data_reference","day":"22","year":"2020"},{"type":"other_academic_publication","day":"23","main_file_link":[{"url":"https://doi.org/10.1002/adma.202070122","open_access":"1"}],"doi":"10.1002/adma.202070122","date_created":"2024-08-20T08:22:42Z","status":"public","publication_identifier":{"eissn":["1521-4095"],"issn":["0935-9648"]},"ddc":["530"],"issue":"16","title":"Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020)","month":"04","publisher":"Wiley","language":[{"iso":"eng"}],"quality_controlled":"1","article_processing_charge":"No","publication":"Advanced Materials","citation":{"short":"F. Gao, J. Wang, H. Watzinger, H. Hu, M.J. Rančić, J. Zhang, T. Wang, Y. Yao, G. Wang, J. Kukucka, L. Vukušić, C. Kloeffel, D. Loss, F. Liu, G. Katsaros, J. Zhang, Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020), Wiley, 2020.","apa":"Gao, F., Wang, J., Watzinger, H., Hu, H., Rančić, M. J., Zhang, J., … Zhang, J. (2020). Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020). Advanced Materials (Vol. 32). Wiley. https://doi.org/10.1002/adma.202070122","ista":"Gao F, Wang J, Watzinger H, Hu H, Rančić MJ, Zhang J, Wang T, Yao Y, Wang G, Kukucka J, Vukušić L, Kloeffel C, Loss D, Liu F, Katsaros G, Zhang J. 2020. Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020), Wiley,p.","mla":"Gao, Fei, et al. “Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020).” Advanced Materials, vol. 32, no. 16, 2070122, Wiley, 2020, doi:10.1002/adma.202070122.","ieee":"F. Gao et al., Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020), vol. 32, no. 16. Wiley, 2020.","chicago":"Gao, Fei, Jian‐Huan Wang, Hannes Watzinger, Hao Hu, Marko J. Rančić, Jie‐Yin Zhang, Ting Wang, et al. Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020). Advanced Materials. Vol. 32. Wiley, 2020. https://doi.org/10.1002/adma.202070122.","ama":"Gao F, Wang J, Watzinger H, et al. Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020). Vol 32. Wiley; 2020. doi:10.1002/adma.202070122"},"date_published":"2020-04-23T00:00:00Z","article_number":"2070122","intvolume":" 32","publication_status":"published","volume":32,"year":"2020","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"id":"7541","status":"public","relation":"other"}]},"date_updated":"2026-06-18T17:54:47Z","department":[{"_id":"GeKa"}],"abstract":[{"lang":"eng","text":"The first wafer-scale growth of site-controlled Ge/Si nanowires is reported by Georgios Katsaros, Jian-Jun Zhang, and co-workers in article number 1906523. They are highly uniform and their position, distance, length, and even square- or L-shaped structures can all be precisely controlled. The electrically tunable spin-orbit coupling demonstrated by transport measurements and the charge sensing between quantum dots in closely spaced wires open a path toward scalable qubit devices using nanowires on silicon."}],"author":[{"full_name":"Gao, Fei","first_name":"Fei","last_name":"Gao"},{"full_name":"Wang, Jian‐Huan","last_name":"Wang","first_name":"Jian‐Huan"},{"first_name":"Hannes","last_name":"Watzinger","full_name":"Watzinger, Hannes","id":"35DF8E50-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Hu, Hao","last_name":"Hu","first_name":"Hao"},{"last_name":"Rančić","first_name":"Marko J.","full_name":"Rančić, Marko J."},{"full_name":"Zhang, Jie‐Yin","last_name":"Zhang","first_name":"Jie‐Yin"},{"full_name":"Wang, Ting","first_name":"Ting","last_name":"Wang"},{"full_name":"Yao, Yuan","last_name":"Yao","first_name":"Yuan"},{"last_name":"Wang","first_name":"Gui‐Lei","full_name":"Wang, Gui‐Lei"},{"full_name":"Kukucka, Josip","id":"3F5D8856-F248-11E8-B48F-1D18A9856A87","first_name":"Josip","last_name":"Kukucka"},{"last_name":"Vukušić","first_name":"Lada","id":"31E9F056-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2424-8636","full_name":"Vukušić, Lada"},{"last_name":"Kloeffel","first_name":"Christoph","full_name":"Kloeffel, Christoph"},{"full_name":"Loss, Daniel","last_name":"Loss","first_name":"Daniel"},{"first_name":"Feng","last_name":"Liu","full_name":"Liu, Feng"},{"full_name":"Katsaros, Georgios","orcid":"0000-0001-8342-202X","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros"},{"full_name":"Zhang, Jian‐Jun","last_name":"Zhang","first_name":"Jian‐Jun"}],"oa":1,"oa_version":"Published Version","_id":"17444"},{"citation":{"ista":"Browning TD, Sawin W. 2020. A geometric version of the circle method. Annals of Mathematics. 191(3), 893–948.","apa":"Browning, T. D., & Sawin, W. (2020). A geometric version of the circle method. Annals of Mathematics. Princeton University. https://doi.org/10.4007/annals.2020.191.3.4","short":"T.D. Browning, W. Sawin, Annals of Mathematics 191 (2020) 893–948.","ieee":"T. D. Browning and W. Sawin, “A geometric version of the circle method,” Annals of Mathematics, vol. 191, no. 3. Princeton University, pp. 893–948, 2020.","chicago":"Browning, Timothy D, and Will Sawin. “A Geometric Version of the Circle Method.” Annals of Mathematics. Princeton University, 2020. https://doi.org/10.4007/annals.2020.191.3.4.","ama":"Browning TD, Sawin W. A geometric version of the circle method. Annals of Mathematics. 2020;191(3):893-948. doi:10.4007/annals.2020.191.3.4","mla":"Browning, Timothy D., and Will Sawin. “A Geometric Version of the Circle Method.” Annals of Mathematics, vol. 191, no. 3, Princeton University, 2020, pp. 893–948, doi:10.4007/annals.2020.191.3.4."},"date_published":"2020-05-01T00:00:00Z","intvolume":" 191","month":"05","publisher":"Princeton University","language":[{"iso":"eng"}],"quality_controlled":"1","article_processing_charge":"No","publication":"Annals of Mathematics","publist_id":"7744","scopus_import":"1","title":"A geometric version of the circle method","issue":"3","day":"01","type":"journal_article","date_created":"2018-12-11T11:45:02Z","doi":"10.4007/annals.2020.191.3.4","arxiv":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1711.10451"}],"status":"public","oa":1,"page":"893-948","article_type":"original","oa_version":"Preprint","_id":"177","department":[{"_id":"TiBr"}],"abstract":[{"lang":"eng","text":"We develop a geometric version of the circle method and use it to compute the compactly supported cohomology of the space of rational curves through a point on a smooth affine hypersurface of sufficiently low degree."}],"external_id":{"isi":["000526986300004"],"arxiv":["1711.10451"]},"author":[{"first_name":"Timothy D","last_name":"Browning","orcid":"0000-0002-8314-0177","full_name":"Browning, Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sawin, Will","first_name":"Will","last_name":"Sawin"}],"date_updated":"2024-10-21T06:02:25Z","publication_status":"published","year":"2020","volume":191,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1}]