[{"publisher":"Taylor & Francis","type":"journal_article","publication_status":"published","oa_version":"Published Version","PlanS_conform":"1","OA_type":"gold","month":"03","article_type":"original","department":[{"_id":"FrPe"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Comprehensive assessment of Himalayan glacial lakes concerning their distribution, dynamics, and hazard potential","date_updated":"2026-03-16T10:21:38Z","OA_place":"publisher","publication_identifier":{"issn":["1947-5705"],"eissn":["1947-5713"]},"_id":"21454","publication":"Geomatics Natural Hazards and Risk","language":[{"iso":"eng"}],"issue":"1","year":"2026","status":"public","acknowledgement":"The work is partially financed by USDMA and WIHG, Dehradun. The authors would like to express their sincere gratitude to Dr. Ashim Sattar for his valuable insights, constructive suggestions, and contributions toward refining and improving the quality of this work. I want to give my special thanks to Mr. Sourav Anand and Mr. Shivyank Negi for helping me create the database. I would also like to thank IIT Kharagpur. For further data access, the corresponding authors can be contacted.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2026-03-04T00:00:00Z","file":[{"checksum":"78f7a3020bf5966e820340a711ea3a6b","date_created":"2026-03-16T10:18:26Z","content_type":"application/pdf","access_level":"open_access","file_name":"2026_Geomatics_Mohanty.pdf","success":1,"file_size":10548823,"file_id":"21458","creator":"dernst","relation":"main_file","date_updated":"2026-03-16T10:18:26Z"}],"author":[{"first_name":"Litan","full_name":"Mohanty, Litan","last_name":"Mohanty"},{"full_name":"Gantayat, Prateek","last_name":"Gantayat","id":"02734268-3e8d-11ef-80a1-cec4a088d004","first_name":"Prateek"}],"volume":17,"ddc":["550"],"license":"https://creativecommons.org/licenses/by/4.0/","abstract":[{"text":"This study examines the distribution, growth, and GLOF hazard of glacial lakes across major Himalayan river basins. Basin-wise GLOF susceptibility was assessed using glacial lake abundance, spatial distribution, and rates of lake area expansion. The Kosi, Yarlung Zangbo, Manas, and Upper Indus basins were identified as the most susceptible and classified as critical. The highest rates of lake size increase were observed in the Kosi Basin, followed by Yarlung Zangbo, Manas, Karnali, Upper Indus, and Tista, indicating their potential as future GLOF-prone regions. Moreover, a Himalayan-scale GLOF hazard map was generated integrating population, hydropower infrastructure, potential flood volume, roads, settlements, and railways revealing high hazard levels in the Chenab, Jhelum, Teesta, and Beas basins in India; the Koshi, Tama-Koshi, and Dudh-Koshi basins in Nepal; and the Kuri Chu sub-basin of the Manas Basin in Bhutan. These findings highlight priority regions where detailed field investigations and hydrodynamic modelling are essential before further infrastructure development.","lang":"eng"}],"file_date_updated":"2026-03-16T10:18:26Z","oa":1,"article_processing_charge":"Yes","article_number":"2639085","has_accepted_license":"1","DOAJ_listed":"1","scopus_import":"1","quality_controlled":"1","date_created":"2026-03-15T23:01:36Z","citation":{"ama":"Mohanty L, GANTAYAT P. Comprehensive assessment of Himalayan glacial lakes concerning their distribution, dynamics, and hazard potential. <i>Geomatics Natural Hazards and Risk</i>. 2026;17(1). doi:<a href=\"https://doi.org/10.1080/19475705.2026.2639085\">10.1080/19475705.2026.2639085</a>","ieee":"L. Mohanty and P. GANTAYAT, “Comprehensive assessment of Himalayan glacial lakes concerning their distribution, dynamics, and hazard potential,” <i>Geomatics Natural Hazards and Risk</i>, vol. 17, no. 1. Taylor &#38; Francis, 2026.","short":"L. Mohanty, P. GANTAYAT, Geomatics Natural Hazards and Risk 17 (2026).","mla":"Mohanty, Litan, and PRATEEK GANTAYAT. “Comprehensive Assessment of Himalayan Glacial Lakes Concerning Their Distribution, Dynamics, and Hazard Potential.” <i>Geomatics Natural Hazards and Risk</i>, vol. 17, no. 1, 2639085, Taylor &#38; Francis, 2026, doi:<a href=\"https://doi.org/10.1080/19475705.2026.2639085\">10.1080/19475705.2026.2639085</a>.","apa":"Mohanty, L., &#38; GANTAYAT, P. (2026). Comprehensive assessment of Himalayan glacial lakes concerning their distribution, dynamics, and hazard potential. <i>Geomatics Natural Hazards and Risk</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/19475705.2026.2639085\">https://doi.org/10.1080/19475705.2026.2639085</a>","chicago":"Mohanty, Litan, and PRATEEK GANTAYAT. “Comprehensive Assessment of Himalayan Glacial Lakes Concerning Their Distribution, Dynamics, and Hazard Potential.” <i>Geomatics Natural Hazards and Risk</i>. Taylor &#38; Francis, 2026. <a href=\"https://doi.org/10.1080/19475705.2026.2639085\">https://doi.org/10.1080/19475705.2026.2639085</a>.","ista":"Mohanty L, GANTAYAT P. 2026. Comprehensive assessment of Himalayan glacial lakes concerning their distribution, dynamics, and hazard potential. Geomatics Natural Hazards and Risk. 17(1), 2639085."},"day":"04","intvolume":"        17","doi":"10.1080/19475705.2026.2639085"},{"arxiv":1,"publication_status":"published","type":"journal_article","publisher":"American Physical Society","oa_version":"Published Version","PlanS_conform":"1","OA_type":"hybrid","month":"01","project":[{"_id":"2688CF98-B435-11E9-9278-68D0E5697425","name":"Angulon: physics and applications of a new quasiparticle","call_identifier":"H2020","grant_number":"801770"}],"article_type":"original","title":"Anomalous multigap topological phases in periodically driven quantum rotors","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"MiLe"}],"date_updated":"2026-03-16T12:21:55Z","OA_place":"publisher","publication_identifier":{"eissn":["2469-9934"],"issn":["2469-9926"]},"ec_funded":1,"_id":"21009","language":[{"iso":"eng"}],"publication":"Physical Review A","issue":"1","year":"2026","status":"public","acknowledgement":"We thank G. M. Koutentakis, S. Wimberger, J. G. E. Harris, T. Enss, and A. Ghazaryan for fruitful discussions. M.L. acknowledges support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). R.-J.S. acknowledges funding from a EPSRC ERC underwrite (Grant No. EP/X025829/1), a EPSRC New Investigator Award (Grant No. EP/W00187X/1), and Trinity College, Cambridge. F.N.Ü. acknowledges support from the Marie Skłodowska-Curie Programme of the European Commission (Grant No. 893915), a Simons Investigator Award (Grant No. 511029), Trinity College Cambridge, and the Royal Society (Grant No. URF/R1/241667).","date_published":"2026-01-12T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_updated":"2026-01-21T09:04:48Z","relation":"main_file","file_id":"21029","creator":"dernst","file_size":2650256,"success":1,"file_name":"2026_PhysicalReviewA_Karle.pdf","date_created":"2026-01-21T09:04:48Z","content_type":"application/pdf","access_level":"open_access","checksum":"ca62a5050a234c0554e2583b1c126057"}],"author":[{"last_name":"Karle","id":"D7C012AE-D7ED-11E9-95E8-1EC5E5697425","orcid":"0000-0002-6963-0129","full_name":"Karle, Volker","first_name":"Volker"},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","first_name":"Mikhail"},{"first_name":"Adrien","last_name":"Bouhon","full_name":"Bouhon, Adrien"},{"first_name":"Robert-Jan","full_name":"Slager, Robert-Jan","last_name":"Slager"},{"first_name":"F. Nur","last_name":"Ünal","full_name":"Ünal, F. Nur"}],"external_id":{"arxiv":["2408.16848"]},"volume":113,"ddc":["530"],"abstract":[{"lang":"eng","text":"We demonstrate that periodically driven quantum rotors provide a promising and broadly applicable platform to implement multigap topological phases, where groups of bands can acquire topological invariants due to non-Abelian braiding of band degeneracies. By adiabatically varying the periodic kicks to the rotor we find nodal-line braiding, which causes sign flips of topological charges of band nodes and can prevent them from annihilating, indicated by nonzero values of the patch Euler class. In particular, we report on the emergence of an anomalous Dirac string phase arising in the strongly driven regime, a truly out-of-equilibrium phase of the quantum rotor. This phase emanates from braiding processes involving all (quasienergy) gaps and manifests itself with edge states at zero angular momentum. Our results reveal direct applications in state-of-the-art experiments of quantum rotors, such as linear molecules driven by periodic far-off-resonant laser pulses or artificial quantum rotors in optical lattices, whose extensive versatility offers precise modification and observation of novel non-Abelian topological properties."}],"file_date_updated":"2026-01-21T09:04:48Z","oa":1,"article_processing_charge":"Yes (via OA deal)","article_number":"012216","has_accepted_license":"1","scopus_import":"1","citation":{"ama":"Karle V, Lemeshko M, Bouhon A, Slager R-J, Ünal FN. Anomalous multigap topological phases in periodically driven quantum rotors. <i>Physical Review A</i>. 2026;113(1). doi:<a href=\"https://doi.org/10.1103/db9d-9bns\">10.1103/db9d-9bns</a>","short":"V. Karle, M. Lemeshko, A. Bouhon, R.-J. Slager, F.N. Ünal, Physical Review A 113 (2026).","ieee":"V. Karle, M. Lemeshko, A. Bouhon, R.-J. Slager, and F. N. Ünal, “Anomalous multigap topological phases in periodically driven quantum rotors,” <i>Physical Review A</i>, vol. 113, no. 1. American Physical Society, 2026.","mla":"Karle, Volker, et al. “Anomalous Multigap Topological Phases in Periodically Driven Quantum Rotors.” <i>Physical Review A</i>, vol. 113, no. 1, 012216, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/db9d-9bns\">10.1103/db9d-9bns</a>.","apa":"Karle, V., Lemeshko, M., Bouhon, A., Slager, R.-J., &#38; Ünal, F. N. (2026). Anomalous multigap topological phases in periodically driven quantum rotors. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/db9d-9bns\">https://doi.org/10.1103/db9d-9bns</a>","chicago":"Karle, Volker, Mikhail Lemeshko, Adrien Bouhon, Robert-Jan Slager, and F. Nur Ünal. “Anomalous Multigap Topological Phases in Periodically Driven Quantum Rotors.” <i>Physical Review A</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/db9d-9bns\">https://doi.org/10.1103/db9d-9bns</a>.","ista":"Karle V, Lemeshko M, Bouhon A, Slager R-J, Ünal FN. 2026. Anomalous multigap topological phases in periodically driven quantum rotors. Physical Review A. 113(1), 012216."},"date_created":"2026-01-20T10:06:07Z","quality_controlled":"1","corr_author":"1","day":"12","intvolume":"       113","doi":"10.1103/db9d-9bns"},{"_id":"21370","publication_identifier":{"eissn":["2515-7647"]},"OA_place":"publisher","date_updated":"2026-03-23T13:18:11Z","title":"Roadmap on deep learning for microscopy","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"ScWa"}],"article_type":"original","month":"03","PlanS_conform":"1","OA_type":"gold","oa_version":"Published Version","type":"journal_article","publisher":"IOP Publishing","publication_status":"published","arxiv":1,"doi":"10.1088/2515-7647/ae0fd1","intvolume":"         8","day":"01","scopus_import":"1","citation":{"ista":"Volpe G, Wählby C, Tian L, Hecht M, Yakimovich A, Monakhova K, Waller L, Sbalzarini IF, Metzler CA, Xie M, Zhang K, Lenton IC, Rubinsztein-Dunlop H, Brunner D, Bai B, Ozcan A, Midtvedt D, Wang H, Li T, Sladoje N, Lindblad J, Smith JT, Ochoa M, Barroso M, Intes X, Qiu T, Yu LY, You S, Liu Y, Ziatdinov MA, Kalinin SV, Sheridan A, Manor U, Nehme E, Goldenberg O, Shechtman Y, Moberg HK, Langhammer C, Špačková B, Helgadottir S, Midtvedt B, Argun A, Thalheim T, Cichos F, Bo S, Hubatsch L, Pineda J, Manzo C, Bachimanchi H, Selander E, Homs-Corbera A, Fränzl M, De Haan K, Rivenson Y, Korczak Z, Adiels CB, Mijalkov M, Veréb D, Chang YW, Pereira JB, Matuszewski D, Kylberg G, Sintorn IM, Caicedo JC, Cimini BA, Lediju Bell MA, Saraiva BM, Jacquemet G, Henriques R, Ouyang W, Le T, Gómez-De-Mariscal E, Sage D, Muñoz-Barrutia A, Lindqvist EJ, Bergman J. 2026. Roadmap on deep learning for microscopy. Journal of Physics: Photonics. 8(1), 012501.","apa":"Volpe, G., Wählby, C., Tian, L., Hecht, M., Yakimovich, A., Monakhova, K., … Bergman, J. (2026). Roadmap on deep learning for microscopy. <i>Journal of Physics: Photonics</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/2515-7647/ae0fd1\">https://doi.org/10.1088/2515-7647/ae0fd1</a>","mla":"Volpe, Giovanni, et al. “Roadmap on Deep Learning for Microscopy.” <i>Journal of Physics: Photonics</i>, vol. 8, no. 1, 012501, IOP Publishing, 2026, doi:<a href=\"https://doi.org/10.1088/2515-7647/ae0fd1\">10.1088/2515-7647/ae0fd1</a>.","chicago":"Volpe, Giovanni, Carolina Wählby, Lei Tian, Michael Hecht, Artur Yakimovich, Kristina Monakhova, Laura Waller, et al. “Roadmap on Deep Learning for Microscopy.” <i>Journal of Physics: Photonics</i>. IOP Publishing, 2026. <a href=\"https://doi.org/10.1088/2515-7647/ae0fd1\">https://doi.org/10.1088/2515-7647/ae0fd1</a>.","ieee":"G. Volpe <i>et al.</i>, “Roadmap on deep learning for microscopy,” <i>Journal of Physics: Photonics</i>, vol. 8, no. 1. IOP Publishing, 2026.","short":"G. Volpe, C. Wählby, L. Tian, M. Hecht, A. Yakimovich, K. Monakhova, L. Waller, I.F. Sbalzarini, C.A. Metzler, M. Xie, K. Zhang, I.C. Lenton, H. Rubinsztein-Dunlop, D. Brunner, B. Bai, A. Ozcan, D. Midtvedt, H. Wang, T. Li, N. Sladoje, J. Lindblad, J.T. Smith, M. Ochoa, M. Barroso, X. Intes, T. Qiu, L.Y. Yu, S. You, Y. Liu, M.A. Ziatdinov, S.V. Kalinin, A. Sheridan, U. Manor, E. Nehme, O. Goldenberg, Y. Shechtman, H.K. Moberg, C. Langhammer, B. Špačková, S. Helgadottir, B. Midtvedt, A. Argun, T. Thalheim, F. Cichos, S. Bo, L. Hubatsch, J. Pineda, C. Manzo, H. Bachimanchi, E. Selander, A. Homs-Corbera, M. Fränzl, K. De Haan, Y. Rivenson, Z. Korczak, C.B. Adiels, M. Mijalkov, D. Veréb, Y.W. Chang, J.B. Pereira, D. Matuszewski, G. Kylberg, I.M. Sintorn, J.C. Caicedo, B.A. Cimini, M.A. Lediju Bell, B.M. Saraiva, G. Jacquemet, R. Henriques, W. Ouyang, T. Le, E. Gómez-De-Mariscal, D. Sage, A. Muñoz-Barrutia, E.J. Lindqvist, J. Bergman, Journal of Physics: Photonics 8 (2026).","ama":"Volpe G, Wählby C, Tian L, et al. Roadmap on deep learning for microscopy. <i>Journal of Physics: Photonics</i>. 2026;8(1). doi:<a href=\"https://doi.org/10.1088/2515-7647/ae0fd1\">10.1088/2515-7647/ae0fd1</a>"},"quality_controlled":"1","date_created":"2026-03-01T23:01:39Z","has_accepted_license":"1","DOAJ_listed":"1","article_processing_charge":"Yes","article_number":"012501","file_date_updated":"2026-03-02T09:05:53Z","oa":1,"ddc":["530"],"abstract":[{"text":"Through digital imaging, microscopy has evolved from primarily being a means for visual observation of life at the micro- and nano-scale, to a quantitative tool with ever-increasing resolution and throughput. Artificial intelligence, deep neural networks, and machine learning (ML) are all niche terms describing computational methods that have gained a pivotal role in microscopy-based research over the past decade. This Roadmap encompasses key aspects of how ML is applied to microscopy image data, with the aim of gaining scientific knowledge by improved image quality, automated detection, segmentation, classification and tracking of objects, and efficient merging of information from multiple imaging modalities. We aim to give the reader an overview of the key developments and an understanding of possibilities and limitations of ML for microscopy. It will be of interest to a wide cross-disciplinary audience in the physical sciences and life sciences.","lang":"eng"}],"external_id":{"arxiv":["2303.03793"]},"author":[{"first_name":"Giovanni","last_name":"Volpe","full_name":"Volpe, Giovanni"},{"last_name":"Wählby","full_name":"Wählby, Carolina","first_name":"Carolina"},{"first_name":"Lei","full_name":"Tian, Lei","last_name":"Tian"},{"first_name":"Michael","last_name":"Hecht","full_name":"Hecht, Michael"},{"full_name":"Yakimovich, Artur","last_name":"Yakimovich","first_name":"Artur"},{"first_name":"Kristina","last_name":"Monakhova","full_name":"Monakhova, Kristina"},{"first_name":"Laura","last_name":"Waller","full_name":"Waller, Laura"},{"last_name":"Sbalzarini","full_name":"Sbalzarini, Ivo F.","first_name":"Ivo F."},{"first_name":"Christopher A.","full_name":"Metzler, Christopher A.","last_name":"Metzler"},{"full_name":"Xie, Mingyang","last_name":"Xie","first_name":"Mingyang"},{"first_name":"Kevin","last_name":"Zhang","full_name":"Zhang, Kevin"},{"first_name":"Isaac C","full_name":"Lenton, Isaac C","orcid":"0000-0002-5010-6984","last_name":"Lenton","id":"a550210f-223c-11ec-8182-e2d45e817efb"},{"first_name":"Halina","full_name":"Rubinsztein-Dunlop, Halina","last_name":"Rubinsztein-Dunlop"},{"first_name":"Daniel","last_name":"Brunner","full_name":"Brunner, Daniel"},{"last_name":"Bai","full_name":"Bai, Bijie","first_name":"Bijie"},{"full_name":"Ozcan, Aydogan","last_name":"Ozcan","first_name":"Aydogan"},{"full_name":"Midtvedt, Daniel","last_name":"Midtvedt","first_name":"Daniel"},{"last_name":"Wang","full_name":"Wang, Hao","first_name":"Hao"},{"last_name":"Li","full_name":"Li, Tongyu","first_name":"Tongyu"},{"first_name":"Nataša","last_name":"Sladoje","full_name":"Sladoje, Nataša"},{"last_name":"Lindblad","full_name":"Lindblad, Joakim","first_name":"Joakim"},{"last_name":"Smith","full_name":"Smith, Jason T.","first_name":"Jason T."},{"last_name":"Ochoa","full_name":"Ochoa, Marien","first_name":"Marien"},{"first_name":"Margarida","full_name":"Barroso, Margarida","last_name":"Barroso"},{"first_name":"Xavier","last_name":"Intes","full_name":"Intes, Xavier"},{"last_name":"Qiu","full_name":"Qiu, Tong","first_name":"Tong"},{"first_name":"Li Yu","full_name":"Yu, Li Yu","last_name":"Yu"},{"first_name":"Sixian","last_name":"You","full_name":"You, Sixian"},{"first_name":"Yongtao","full_name":"Liu, Yongtao","last_name":"Liu"},{"first_name":"Maxim A.","last_name":"Ziatdinov","full_name":"Ziatdinov, Maxim A."},{"full_name":"Kalinin, Sergei V.","last_name":"Kalinin","first_name":"Sergei V."},{"last_name":"Sheridan","full_name":"Sheridan, Arlo","first_name":"Arlo"},{"full_name":"Manor, Uri","last_name":"Manor","first_name":"Uri"},{"first_name":"Elias","last_name":"Nehme","full_name":"Nehme, Elias"},{"last_name":"Goldenberg","full_name":"Goldenberg, Ofri","first_name":"Ofri"},{"full_name":"Shechtman, Yoav","last_name":"Shechtman","first_name":"Yoav"},{"first_name":"Henrik K.","full_name":"Moberg, Henrik K.","last_name":"Moberg"},{"first_name":"Christoph","full_name":"Langhammer, Christoph","last_name":"Langhammer"},{"full_name":"Špačková, Barbora","last_name":"Špačková","first_name":"Barbora"},{"full_name":"Helgadottir, Saga","last_name":"Helgadottir","first_name":"Saga"},{"first_name":"Benjamin","last_name":"Midtvedt","full_name":"Midtvedt, Benjamin"},{"first_name":"Aykut","last_name":"Argun","full_name":"Argun, Aykut"},{"last_name":"Thalheim","full_name":"Thalheim, Tobias","first_name":"Tobias"},{"last_name":"Cichos","full_name":"Cichos, Frank","first_name":"Frank"},{"full_name":"Bo, Stefano","last_name":"Bo","first_name":"Stefano"},{"last_name":"Hubatsch","full_name":"Hubatsch, Lars","first_name":"Lars"},{"first_name":"Jesus","last_name":"Pineda","full_name":"Pineda, Jesus"},{"first_name":"Carlo","full_name":"Manzo, Carlo","last_name":"Manzo"},{"full_name":"Bachimanchi, Harshith","last_name":"Bachimanchi","first_name":"Harshith"},{"last_name":"Selander","full_name":"Selander, Erik","first_name":"Erik"},{"last_name":"Homs-Corbera","full_name":"Homs-Corbera, Antoni","first_name":"Antoni"},{"last_name":"Fränzl","full_name":"Fränzl, Martin","first_name":"Martin"},{"last_name":"De Haan","full_name":"De Haan, Kevin","first_name":"Kevin"},{"first_name":"Yair","full_name":"Rivenson, Yair","last_name":"Rivenson"},{"first_name":"Zofia","full_name":"Korczak, Zofia","last_name":"Korczak"},{"first_name":"Caroline Beck","full_name":"Adiels, Caroline Beck","last_name":"Adiels"},{"first_name":"Mite","full_name":"Mijalkov, Mite","last_name":"Mijalkov"},{"first_name":"Dániel","full_name":"Veréb, Dániel","last_name":"Veréb"},{"first_name":"Yu Wei","full_name":"Chang, Yu Wei","last_name":"Chang"},{"first_name":"Joana B.","last_name":"Pereira","full_name":"Pereira, Joana B."},{"first_name":"Damian","last_name":"Matuszewski","full_name":"Matuszewski, Damian"},{"full_name":"Kylberg, Gustaf","last_name":"Kylberg","first_name":"Gustaf"},{"last_name":"Sintorn","full_name":"Sintorn, Ida Maria","first_name":"Ida Maria"},{"last_name":"Caicedo","full_name":"Caicedo, Juan C.","first_name":"Juan C."},{"last_name":"Cimini","full_name":"Cimini, Beth A.","first_name":"Beth A."},{"first_name":"Muyinatu A.","full_name":"Lediju Bell, Muyinatu A.","last_name":"Lediju Bell"},{"first_name":"Bruno M.","full_name":"Saraiva, Bruno M.","last_name":"Saraiva"},{"full_name":"Jacquemet, Guillaume","last_name":"Jacquemet","first_name":"Guillaume"},{"first_name":"Ricardo","last_name":"Henriques","full_name":"Henriques, Ricardo"},{"first_name":"Wei","full_name":"Ouyang, Wei","last_name":"Ouyang"},{"first_name":"Trang","full_name":"Le, Trang","last_name":"Le"},{"full_name":"Gómez-De-Mariscal, Estibaliz","last_name":"Gómez-De-Mariscal","first_name":"Estibaliz"},{"last_name":"Sage","full_name":"Sage, Daniel","first_name":"Daniel"},{"full_name":"Muñoz-Barrutia, Arrate","last_name":"Muñoz-Barrutia","first_name":"Arrate"},{"last_name":"Lindqvist","full_name":"Lindqvist, Ebba Josefson","first_name":"Ebba Josefson"},{"first_name":"Johanna","last_name":"Bergman","full_name":"Bergman, Johanna"}],"volume":8,"date_published":"2026-03-01T00:00:00Z","file":[{"success":1,"file_name":"2026_JPhysPhotonics_Volpe.pdf","file_size":16789781,"checksum":"172720f1f0c5c9d06a282e52023a0030","date_created":"2026-03-02T09:05:53Z","content_type":"application/pdf","access_level":"open_access","date_updated":"2026-03-02T09:05:53Z","file_id":"21375","creator":"dernst","relation":"main_file"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","year":"2026","issue":"1","language":[{"iso":"eng"}],"publication":"Journal of Physics: Photonics"},{"oa_version":"Published Version","type":"journal_article","publication_status":"published","publisher":"IOP Publishing","arxiv":1,"article_type":"original","project":[{"_id":"7c040762-9f16-11ee-852c-dd79eeee4ab3","name":"Coherent Optical Metrology Beyond Electric-Dipole-Allowed Transitions","grant_number":"F100403"}],"month":"03","OA_type":"hybrid","date_updated":"2026-03-23T13:26:26Z","department":[{"_id":"MiLe"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"The R-index: A universal metric for evaluating OAM content and mode purity in optical fields","_id":"21470","publication_identifier":{"eissn":["2515-7647"]},"OA_place":"publisher","year":"2026","issue":"1","language":[{"iso":"eng"}],"publication":"Journal of Physics: Photonics","author":[{"full_name":"Bahl, Monika","last_name":"Bahl","first_name":"Monika"},{"first_name":"Georgios","full_name":"Koutentakis, Georgios","last_name":"Koutentakis","id":"d7b23d3a-9e21-11ec-b482-f76739596b95"},{"orcid":"0000-0003-4074-2570","full_name":"Maslov, Mikhail","last_name":"Maslov","id":"2E65BB0E-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail"},{"first_name":"Tom","full_name":"Jungnickel, Tom","last_name":"Jungnickel"},{"first_name":"Timo","full_name":"Gaßen, Timo","last_name":"Gaßen"},{"first_name":"Mikhail","full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko"},{"first_name":"Oliver H.","last_name":"Heckl","full_name":"Heckl, Oliver H."}],"external_id":{"arxiv":["2508.12973"]},"volume":8,"file":[{"file_id":"21476","creator":"dernst","relation":"main_file","date_updated":"2026-03-23T13:24:01Z","checksum":"0ec8a2d3f9efa704203a41f068344974","date_created":"2026-03-23T13:24:01Z","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"2026_JPhysPhotonics_Bahl.pdf","file_size":1150404}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2026-03-10T00:00:00Z","acknowledgement":"This research was funded in whole or in part by the Austrian Science Fund (FWF) [10.55776/F1004]. For open access purposes, the author has applied a CC BY public copyright license to any author accepted manuscript version arising from this submission.","status":"public","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","article_number":"015071","file_date_updated":"2026-03-23T13:24:01Z","oa":1,"abstract":[{"lang":"eng","text":"Despite its pivotal role in optical manipulation, high capacity communications, and quantum information, a general measure of orbital angular momentum (OAM) in structured light remains elusive. In optical fields, where multiple vortices coexist, the local nature of vortex OAM and the absence of a common rotation axis make the total OAM of the field difficult to quantify. Here, we introduce the R index—a metric that captures the intrinsic OAM content of any structured optical field, from pure Laguerre–Gaussian modes to arbitrary multi vortex superpositions. Not only does this metric quantify the total OAM, it also assesses field purity, providing insight into the fidelity and robustness of the OAM generation. By unifying OAM characterization into a single figure of merit, the R index enables direct comparison across diverse beam profiles and facilitates the identification of optimal configurations for both foundational studies and applied technologies."}],"ddc":["530"],"doi":"10.1088/2515-7647/ae3506","intvolume":"         8","corr_author":"1","day":"10","scopus_import":"1","date_created":"2026-03-22T23:04:32Z","citation":{"ama":"Bahl M, Koutentakis G, Maslov M, et al. The R-index: A universal metric for evaluating OAM content and mode purity in optical fields. <i>Journal of Physics: Photonics</i>. 2026;8(1). doi:<a href=\"https://doi.org/10.1088/2515-7647/ae3506\">10.1088/2515-7647/ae3506</a>","short":"M. Bahl, G. Koutentakis, M. Maslov, T. Jungnickel, T. Gaßen, M. Lemeshko, O.H. Heckl, Journal of Physics: Photonics 8 (2026).","ieee":"M. Bahl <i>et al.</i>, “The R-index: A universal metric for evaluating OAM content and mode purity in optical fields,” <i>Journal of Physics: Photonics</i>, vol. 8, no. 1. IOP Publishing, 2026.","chicago":"Bahl, Monika, Georgios Koutentakis, Mikhail Maslov, Tom Jungnickel, Timo Gaßen, Mikhail Lemeshko, and Oliver H. Heckl. “The R-Index: A Universal Metric for Evaluating OAM Content and Mode Purity in Optical Fields.” <i>Journal of Physics: Photonics</i>. IOP Publishing, 2026. <a href=\"https://doi.org/10.1088/2515-7647/ae3506\">https://doi.org/10.1088/2515-7647/ae3506</a>.","mla":"Bahl, Monika, et al. “The R-Index: A Universal Metric for Evaluating OAM Content and Mode Purity in Optical Fields.” <i>Journal of Physics: Photonics</i>, vol. 8, no. 1, 015071, IOP Publishing, 2026, doi:<a href=\"https://doi.org/10.1088/2515-7647/ae3506\">10.1088/2515-7647/ae3506</a>.","apa":"Bahl, M., Koutentakis, G., Maslov, M., Jungnickel, T., Gaßen, T., Lemeshko, M., &#38; Heckl, O. H. (2026). The R-index: A universal metric for evaluating OAM content and mode purity in optical fields. <i>Journal of Physics: Photonics</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/2515-7647/ae3506\">https://doi.org/10.1088/2515-7647/ae3506</a>","ista":"Bahl M, Koutentakis G, Maslov M, Jungnickel T, Gaßen T, Lemeshko M, Heckl OH. 2026. The R-index: A universal metric for evaluating OAM content and mode purity in optical fields. Journal of Physics: Photonics. 8(1), 015071."},"quality_controlled":"1"},{"file_date_updated":"2026-03-23T13:08:06Z","oa":1,"ddc":["530"],"abstract":[{"lang":"eng","text":"Terahertz (THz) spectroscopy is a powerful probe of low-energy excitations in complex materials. Extending it into the nonlinear regime broadens its scope and can provide valuable insight into interactions among these modes. However, interpreting nonlinear spectra is challenging because resonant features in this case do not always reflect intrinsic material dynamics. Here, we study nonlinear THz-induced Kerr effect in a generic material LaAlO3. After detailed analysis of temporal oscillations of the Kerr signal, we identify an 𝐸𝑔 Raman mode at 1.1 THz excited through a two-photon process, while two additional peaks (0.86 and 0.36 THz) arise from phase matching of the near-infrared probe beam with co- and counterpropagating THz pump fields, mediated by off-resonant electronic hyperpolarizability. These results demonstrate the crucial role of kinematic effects in shaping THz-induced Kerr response and establish a framework for interpreting nonlinear spectroscopies in complex materials."}],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","article_number":"106901","day":"13","corr_author":"1","scopus_import":"1","date_created":"2026-03-22T23:04:31Z","citation":{"ista":"Shen C, Frenzel M, Maehrlein SF, Alpichshev Z. 2026. Disentangling electronic and ionic nonlinear polarization effects in bulk THz Kerr response. Physical Review Letters. 136(10), 106901.","chicago":"Shen, Chao, Maximilian Frenzel, Sebastian F. Maehrlein, and Zhanybek Alpichshev. “Disentangling Electronic and Ionic Nonlinear Polarization Effects in Bulk THz Kerr Response.” <i>Physical Review Letters</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/1c5k-9z82\">https://doi.org/10.1103/1c5k-9z82</a>.","mla":"Shen, Chao, et al. “Disentangling Electronic and Ionic Nonlinear Polarization Effects in Bulk THz Kerr Response.” <i>Physical Review Letters</i>, vol. 136, no. 10, 106901, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/1c5k-9z82\">10.1103/1c5k-9z82</a>.","apa":"Shen, C., Frenzel, M., Maehrlein, S. F., &#38; Alpichshev, Z. (2026). Disentangling electronic and ionic nonlinear polarization effects in bulk THz Kerr response. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/1c5k-9z82\">https://doi.org/10.1103/1c5k-9z82</a>","ama":"Shen C, Frenzel M, Maehrlein SF, Alpichshev Z. Disentangling electronic and ionic nonlinear polarization effects in bulk THz Kerr response. <i>Physical Review Letters</i>. 2026;136(10). doi:<a href=\"https://doi.org/10.1103/1c5k-9z82\">10.1103/1c5k-9z82</a>","short":"C. Shen, M. Frenzel, S.F. Maehrlein, Z. Alpichshev, Physical Review Letters 136 (2026).","ieee":"C. Shen, M. Frenzel, S. F. Maehrlein, and Z. Alpichshev, “Disentangling electronic and ionic nonlinear polarization effects in bulk THz Kerr response,” <i>Physical Review Letters</i>, vol. 136, no. 10. American Physical Society, 2026."},"quality_controlled":"1","doi":"10.1103/1c5k-9z82","intvolume":"       136","issue":"10","language":[{"iso":"eng"}],"publication":"Physical Review Letters","year":"2026","acknowledgement":"Z. A. acknowledges support from the collaborative research project SFB Q-M&S funded by the Austrian Science Fund (FWF, Grant No. PR1050F8602). S. F. M. acknowledges support and funding from the Deutsche Forschungsgemeinschaft (DFG, Grant No. 469405347).","status":"public","author":[{"first_name":"Chao","full_name":"Shen, Chao","id":"f84c083e-dc8d-11ea-abe3-aaf3d822a8bb","last_name":"Shen"},{"full_name":"Frenzel, Maximilian","last_name":"Frenzel","first_name":"Maximilian"},{"first_name":"Sebastian F.","last_name":"Maehrlein","full_name":"Maehrlein, Sebastian F."},{"first_name":"Zhanybek","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","last_name":"Alpichshev","orcid":"0000-0002-7183-5203","full_name":"Alpichshev, Zhanybek"}],"volume":136,"date_published":"2026-03-13T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"checksum":"712b05b4b0e0fbe9fd426a8c9d41ce20","content_type":"application/pdf","access_level":"open_access","date_created":"2026-03-23T13:08:06Z","success":1,"file_name":"2026_PhysicalReviewLetters_Shen.pdf","file_size":1375532,"creator":"dernst","file_id":"21475","relation":"main_file","date_updated":"2026-03-23T13:08:06Z"}],"title":"Disentangling electronic and ionic nonlinear polarization effects in bulk THz Kerr response","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"ZhAl"},{"_id":"GradSch"}],"date_updated":"2026-03-23T13:11:09Z","publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"OA_place":"publisher","_id":"21469","oa_version":"Published Version","publication_status":"published","type":"journal_article","publisher":"American Physical Society","PlanS_conform":"1","OA_type":"hybrid","article_type":"original","month":"03","project":[{"grant_number":"F8602","name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Nonlinear THz spectroscopy of quantum critical materials","_id":"34a97cc6-11ca-11ed-8bc3-9acbba792f33"}]},{"acknowledgement":"We acknowledge the generosity of the patients, who contributed time and effort to take part in this study.","status":"public","date_published":"2026-03-09T00:00:00Z","file":[{"date_updated":"2026-03-23T14:27:39Z","relation":"main_file","file_id":"21478","creator":"dernst","file_size":33974419,"success":1,"file_name":"2026_BrainCommunications_Cardenas.pdf","date_created":"2026-03-23T14:27:39Z","access_level":"open_access","content_type":"application/pdf","checksum":"b5b45c16defeaf88056fc3b939bd0350"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Araceli R.","full_name":"Cardenas, Araceli R.","last_name":"Cardenas"},{"first_name":"Juan F","id":"44B06F76-F248-11E8-B48F-1D18A9856A87","last_name":"Ramirez Villegas","full_name":"Ramirez Villegas, Juan F"},{"last_name":"Kovach","full_name":"Kovach, Christopher K.","first_name":"Christopher K."},{"first_name":"Phillip E.","last_name":"Gander","full_name":"Gander, Phillip E."},{"first_name":"Rachel C.","last_name":"Cole","full_name":"Cole, Rachel C."},{"first_name":"Andrew J.","last_name":"Grossbach","full_name":"Grossbach, Andrew J."},{"first_name":"Hiroto","last_name":"Kawasaki","full_name":"Kawasaki, Hiroto"},{"full_name":"Greenlee, Jeremy D.W.","last_name":"Greenlee","first_name":"Jeremy D.W."},{"last_name":"Howard","full_name":"Howard, Matthew A.","first_name":"Matthew A."},{"last_name":"Nourski","full_name":"Nourski, Kirill V.","first_name":"Kirill V."},{"first_name":"Matthew I.","last_name":"Banks","full_name":"Banks, Matthew I."},{"first_name":"Michelle W.","last_name":"Voss","full_name":"Voss, Michelle W."}],"volume":8,"language":[{"iso":"eng"}],"publication":"Brain Communications","issue":"2","year":"2026","scopus_import":"1","quality_controlled":"1","date_created":"2026-03-22T23:04:34Z","citation":{"ama":"Cardenas AR, Ramirez Villegas JF, Kovach CK, et al. Exercise enhances hippocampal-cortical ripple interactions in the human brain. <i>Brain Communications</i>. 2026;8(2). doi:<a href=\"https://doi.org/10.1093/braincomms/fcag041\">10.1093/braincomms/fcag041</a>","ieee":"A. R. Cardenas <i>et al.</i>, “Exercise enhances hippocampal-cortical ripple interactions in the human brain,” <i>Brain Communications</i>, vol. 8, no. 2. Oxford University Press, 2026.","short":"A.R. Cardenas, J.F. Ramirez Villegas, C.K. Kovach, P.E. Gander, R.C. Cole, A.J. Grossbach, H. Kawasaki, J.D.W. Greenlee, M.A. Howard, K.V. Nourski, M.I. Banks, M.W. Voss, Brain Communications 8 (2026).","chicago":"Cardenas, Araceli R., Juan F Ramirez Villegas, Christopher K. Kovach, Phillip E. Gander, Rachel C. Cole, Andrew J. Grossbach, Hiroto Kawasaki, et al. “Exercise Enhances Hippocampal-Cortical Ripple Interactions in the Human Brain.” <i>Brain Communications</i>. Oxford University Press, 2026. <a href=\"https://doi.org/10.1093/braincomms/fcag041\">https://doi.org/10.1093/braincomms/fcag041</a>.","mla":"Cardenas, Araceli R., et al. “Exercise Enhances Hippocampal-Cortical Ripple Interactions in the Human Brain.” <i>Brain Communications</i>, vol. 8, no. 2, fcag041, Oxford University Press, 2026, doi:<a href=\"https://doi.org/10.1093/braincomms/fcag041\">10.1093/braincomms/fcag041</a>.","apa":"Cardenas, A. R., Ramirez Villegas, J. F., Kovach, C. K., Gander, P. E., Cole, R. C., Grossbach, A. J., … Voss, M. W. (2026). Exercise enhances hippocampal-cortical ripple interactions in the human brain. <i>Brain Communications</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/braincomms/fcag041\">https://doi.org/10.1093/braincomms/fcag041</a>","ista":"Cardenas AR, Ramirez Villegas JF, Kovach CK, Gander PE, Cole RC, Grossbach AJ, Kawasaki H, Greenlee JDW, Howard MA, Nourski KV, Banks MI, Voss MW. 2026. Exercise enhances hippocampal-cortical ripple interactions in the human brain. Brain Communications. 8(2), fcag041."},"day":"09","corr_author":"1","intvolume":"         8","doi":"10.1093/braincomms/fcag041","abstract":[{"text":"Physical exercise acutely improves hippocampus-dependent memory. Whereas animal studies have offered cellular- and synaptic-level accounts of these effects, human neuroimaging studies show that exercise improves hippocampal-cortical connectivity at the macroscale level. However, the neurophysiological basis of exercise-induced effects on hippocampal-cortical circuits remains unknown. Experimental evidence supports the idea that hippocampal sharp wave-ripples (SWR) play a critical role in learning and memory. Coupling between SWRs in the hippocampus and neocortex may reflect modulations in inter-regional connectivity required by mnemonic processes. Here, we examine the hypothesis that exercise modulates hippocampal-cortical ripple dynamics in the human brain. We performed intracranial recordings in epilepsy patients undergoing pre-surgical evaluation, during awake resting state, before and after an exercise session. Exercise increased ripple rate in the hippocampus. Exercise also enhanced the coupling and phase-synchrony between cortical ripples in the limbic and the default mode (DM) cortical networks and hippocampal SWRs. Further, a higher heart rate during exercise, reflecting exercise intensity, was related to a subsequent increase in resting state ripples across specific cortical networks, including the DM network. These results offer the first direct evidence that a single exercise session elicits changes in ripple events, a well-established neurophysiological marker of mnemonic processing. The characterisation and anatomical distribution of the described modulation points to hippocampal ripples as a potential mechanism by which exercise elicits its reported short-term effects in cognition.","lang":"eng"}],"ddc":["570"],"file_date_updated":"2026-03-23T14:27:39Z","oa":1,"article_processing_charge":"Yes","article_number":"fcag041","has_accepted_license":"1","DOAJ_listed":"1","PlanS_conform":"1","OA_type":"gold","month":"03","article_type":"original","publisher":"Oxford University Press","type":"journal_article","publication_status":"published","oa_version":"Published Version","OA_place":"publisher","publication_identifier":{"eissn":["2632-1297"]},"_id":"21473","department":[{"_id":"JoCs"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Exercise enhances hippocampal-cortical ripple interactions in the human brain","date_updated":"2026-03-23T14:30:47Z"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"success":1,"file_name":"2026_AmericanJourBotany_Backlund.pdf","file_size":495080,"checksum":"6116108a12c4a5cc91fc653d67885309","content_type":"application/pdf","access_level":"open_access","date_created":"2026-03-23T14:01:44Z","date_updated":"2026-03-23T14:01:44Z","creator":"dernst","file_id":"21477","relation":"main_file"}],"date_published":"2026-03-11T00:00:00Z","external_id":{"pmid":["41814642"]},"author":[{"full_name":"Backlund, Sofia Maria","id":"a19ed178-1337-11ed-9389-c30ab879a82a","last_name":"Backlund","first_name":"Sofia Maria"},{"first_name":"Sean","full_name":"Stankowski, Sean","last_name":"Stankowski","id":"43161670-5719-11EA-8025-FABC3DDC885E"},{"full_name":"Soler Schaller, Rosina Matilde","id":"9e668447-8c32-11ed-b0c7-8dc2d7b80803","last_name":"Soler Schaller","first_name":"Rosina Matilde"}],"volume":113,"acknowledgement":"We thank the Barton group at the Institute of Scienceand Technology Austria for many fruitful conversationsthat triggered the germination of the ideas and questions discussed here. N. H. Barton, P. Surendranadh, A. Pal,Z. Mérai, and two anonymous reviewers provided useful comments on the manuscript.","status":"public","year":"2026","language":[{"iso":"eng"}],"publication":"American Journal of Botany","issue":"3","intvolume":"       113","doi":"10.1002/ajb2.70175","scopus_import":"1","citation":{"ama":"Backlund SM, Stankowski S, Soler Schaller RM. Seeds as space-time travelers: How does evolution balance the joint benefits and trade-offs of dormancy and dispersal? <i>American Journal of Botany</i>. 2026;113(3). doi:<a href=\"https://doi.org/10.1002/ajb2.70175\">10.1002/ajb2.70175</a>","short":"S.M. Backlund, S. Stankowski, R.M. Soler Schaller, American Journal of Botany 113 (2026).","ieee":"S. M. Backlund, S. Stankowski, and R. M. Soler Schaller, “Seeds as space-time travelers: How does evolution balance the joint benefits and trade-offs of dormancy and dispersal?,” <i>American Journal of Botany</i>, vol. 113, no. 3. Wiley, 2026.","ista":"Backlund SM, Stankowski S, Soler Schaller RM. 2026. Seeds as space-time travelers: How does evolution balance the joint benefits and trade-offs of dormancy and dispersal? American Journal of Botany. 113(3), e70175.","apa":"Backlund, S. M., Stankowski, S., &#38; Soler Schaller, R. M. (2026). Seeds as space-time travelers: How does evolution balance the joint benefits and trade-offs of dormancy and dispersal? <i>American Journal of Botany</i>. Wiley. <a href=\"https://doi.org/10.1002/ajb2.70175\">https://doi.org/10.1002/ajb2.70175</a>","mla":"Backlund, Sofia Maria, et al. “Seeds as Space-Time Travelers: How Does Evolution Balance the Joint Benefits and Trade-Offs of Dormancy and Dispersal?” <i>American Journal of Botany</i>, vol. 113, no. 3, e70175, Wiley, 2026, doi:<a href=\"https://doi.org/10.1002/ajb2.70175\">10.1002/ajb2.70175</a>.","chicago":"Backlund, Sofia Maria, Sean Stankowski, and Rosina Matilde Soler Schaller. “Seeds as Space-Time Travelers: How Does Evolution Balance the Joint Benefits and Trade-Offs of Dormancy and Dispersal?” <i>American Journal of Botany</i>. Wiley, 2026. <a href=\"https://doi.org/10.1002/ajb2.70175\">https://doi.org/10.1002/ajb2.70175</a>."},"date_created":"2026-03-22T23:04:33Z","quality_controlled":"1","day":"11","corr_author":"1","article_processing_charge":"No","article_number":"e70175","has_accepted_license":"1","ddc":["580","570"],"file_date_updated":"2026-03-23T14:01:44Z","oa":1,"month":"03","article_type":"letter_note","OA_type":"hybrid","type":"journal_article","publisher":"Wiley","publication_status":"published","oa_version":"Published Version","_id":"21471","pmid":1,"OA_place":"publisher","publication_identifier":{"eissn":["1537-2197"],"issn":["0002-9122"]},"date_updated":"2026-03-23T14:47:52Z","title":"Seeds as space-time travelers: How does evolution balance the joint benefits and trade-offs of dormancy and dispersal?","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"NiBa"},{"_id":"GradSch"}]},{"date_updated":"2026-03-23T15:46:31Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"H α as a tracer of star formation in the SPHINX cosmological simulations","department":[{"_id":"JoMa"}],"_id":"21481","OA_place":"publisher","publication_identifier":{"eissn":["1432-0746"],"issn":["0004-6361"]},"publisher":"EDP Sciences","publication_status":"published","type":"journal_article","oa_version":"Published Version","arxiv":1,"project":[{"_id":"bd9b2118-d553-11ed-ba76-db24564edfea","name":"Young galaxies as tracers and agents of cosmic reionization","grant_number":"101076224"}],"month":"03","article_type":"original","OA_type":"diamond","PlanS_conform":"1","article_number":"A184","article_processing_charge":"No","DOAJ_listed":"1","has_accepted_license":"1","ddc":["520"],"abstract":[{"lang":"eng","text":"The Hα emission line in galaxies is a powerful tracer of their recent star formation activity. With the advent of JWST, we are now able to routinely observe Hα in galaxies at high redshift (z ≳ 3) and thus measure their star formation rates (SFRs). However, using classical SFR(Hα) calibrations to derive the SFRs leads to biased results because high-redshift galaxies are commonly characterized by low metallicities and bursty star formation histories, affecting the conversion factor between the Hα luminosity (LHα) and the SFR. We developed a set of new SFR(Hα) calibrations that allowed us to predict the SFRs of Hα-emitters at z ≳ 3 with very little error. We used the SPHINX cosmological simulations to select a sample of star-forming galaxies representative of the Hα-emitter population observed with JWST. We then derived linear corrections to the classical SFR(Hα) calibrations that took variations in the physical properties (e.g., stellar metallicities) among individual galaxies into account. We obtained two new SFR(Hα) calibrations that compared to the classical calibrations reduce the root mean squared error (RMSE) in the predicted SFRs by ΔRMSE ≈ 0.04 dex and ΔRMSE ≈ 0.06 dex, respectively. Using the recent JWST NIRCam/grism observations of Hα-emitters at z ∼ 6, we show that the new calibrations affect the high-redshift galaxy population statistics: (i) the estimated cosmic SFR density decreases by ΔρSFR ≈ 12%, and (ii) the observed slope of the star formation main sequence increases by Δ∂logSFR/∂logM★ = 0.08 ± 0.02."}],"oa":1,"file_date_updated":"2026-03-23T15:44:09Z","intvolume":"       707","doi":"10.1051/0004-6361/202557114","quality_controlled":"1","citation":{"mla":"Kramarenko, Ivan, et al. “H α as a Tracer of Star Formation in the SPHINX Cosmological Simulations.” <i>Astronomy &#38; Astrophysics</i>, vol. 707, A184, EDP Sciences, 2026, doi:<a href=\"https://doi.org/10.1051/0004-6361/202557114\">10.1051/0004-6361/202557114</a>.","chicago":"Kramarenko, Ivan, J. Rosdahl, J. Blaizot, Jorryt J Matthee, H. Katz, and Claudia Di Cesare. “H α as a Tracer of Star Formation in the SPHINX Cosmological Simulations.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2026. <a href=\"https://doi.org/10.1051/0004-6361/202557114\">https://doi.org/10.1051/0004-6361/202557114</a>.","apa":"Kramarenko, I., Rosdahl, J., Blaizot, J., Matthee, J. J., Katz, H., &#38; Di Cesare, C. (2026). H α as a tracer of star formation in the SPHINX cosmological simulations. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202557114\">https://doi.org/10.1051/0004-6361/202557114</a>","ista":"Kramarenko I, Rosdahl J, Blaizot J, Matthee JJ, Katz H, Di Cesare C. 2026. H α as a tracer of star formation in the SPHINX cosmological simulations. Astronomy &#38; Astrophysics. 707, A184.","short":"I. Kramarenko, J. Rosdahl, J. Blaizot, J.J. Matthee, H. Katz, C. Di Cesare, Astronomy &#38; Astrophysics 707 (2026).","ieee":"I. Kramarenko, J. Rosdahl, J. Blaizot, J. J. Matthee, H. Katz, and C. Di Cesare, “H α as a tracer of star formation in the SPHINX cosmological simulations,” <i>Astronomy &#38; Astrophysics</i>, vol. 707. EDP Sciences, 2026.","ama":"Kramarenko I, Rosdahl J, Blaizot J, Matthee JJ, Katz H, Di Cesare C. H α as a tracer of star formation in the SPHINX cosmological simulations. <i>Astronomy &#38; Astrophysics</i>. 2026;707. doi:<a href=\"https://doi.org/10.1051/0004-6361/202557114\">10.1051/0004-6361/202557114</a>"},"date_created":"2026-03-23T14:58:03Z","corr_author":"1","day":"05","year":"2026","language":[{"iso":"eng"}],"publication":"Astronomy & Astrophysics","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2026-03-05T00:00:00Z","file":[{"date_updated":"2026-03-23T15:44:09Z","file_id":"21492","creator":"dernst","relation":"main_file","success":1,"file_name":"2026_AstronomyAstrophysics_Kramarenko.pdf","file_size":904565,"checksum":"7429076b381dd498084f40ffd199e714","date_created":"2026-03-23T15:44:09Z","access_level":"open_access","content_type":"application/pdf"}],"volume":707,"external_id":{"arxiv":["2509.05403"]},"author":[{"first_name":"Ivan","orcid":"0000-0001-5346-6048","full_name":"Kramarenko, Ivan","id":"9a9394cb-3200-11ee-973b-f5ba2a8b16e4","last_name":"Kramarenko"},{"first_name":"J.","last_name":"Rosdahl","full_name":"Rosdahl, J."},{"full_name":"Blaizot, J.","last_name":"Blaizot","first_name":"J."},{"last_name":"Matthee","id":"7439a258-f3c0-11ec-9501-9df22fe06720","orcid":"0000-0003-2871-127X","full_name":"Matthee, Jorryt J","first_name":"Jorryt J"},{"last_name":"Katz","full_name":"Katz, H.","first_name":"H."},{"full_name":"Di Cesare, Claudia","last_name":"Di Cesare","id":"2d002343-372f-11ef-98ec-a164d20427cb","first_name":"Claudia"}],"acknowledgement":"We thank the anonymous referee for the insightful comments that helped improve the manuscript. We also thank Thibault Garel, Pascal Oesch, Irene Shivaei, Charlotte Simmonds, Andrew Hopkins, Daniel Schaerer, and Rashmi Gottumukkala for useful comments and productive discussions. We gratefully acknowledge support from the CBPsmn (PSMN, Pôle Scientifique de Modélisation Numérique) of the ENS de Lyon for the computing resources.\r\nFunded by the European Union (ERC, AGENTS, 101076224). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. This work made extensive use of several open-source software packages, and we gratefully acknowledge the efforts of their authors: numpy (Harris et al. 2020), astropy (Astropy Collaboration 2022), matplotlib (Hunter 2007), ipython (Perez & Granger 2007), and scikit-learn (Pedregosa et al. 2011).","status":"public"},{"publication":"Physical Review Letters","language":[{"iso":"eng"}],"issue":"9","year":"2026","status":"public","acknowledgement":"We acknowledge insightful discussions with Antoine Browaeys, Mari Carmen Bañuls, Soonwon Choi, Thierry Lahaye, Daniel Stilck-França, Georgios Styliaris, and Xavier Waintal. The experimental data have been collected using the Qiskit library [103], and have been postprocessed using the RandomMeas [104] and ITensor [105] libraries. The work of M. V. and B. V. was funded by the French National Research Agency via the JCJC project QRand (No. ANR-20-CE47-0005), and via the research programs Plan France 2030 EPIQ (No. ANR-22-\r\nPETQ-0007), QUBITAF (No. ANR-22-PETQ-0004), and HQI (No. ANR-22-PNCQ-0002). We acknowledge the use of IBM Quantum Credits for this work. M. L. acknowledges support by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy—EXC-2111–390814868. The work of C. L. was funded by the French National Research Agency via the PRC project ESQuisses (No. ANR-20-CE47-0014-01). J. I. C.\r\nacknowledges funding from the Federal Ministry of Education and Research Germany (BMBF) via the project FermiQP (No. 13N15889). Work at MPQ is part of the Munich Quantum Valley, which is supported by the Bavarian state government with funds from the Hightech Agenda\r\nBayern Plus. P. Z. acknowledges support by the European Union’s Horizon Europe research and innovation program under Grant Agreement No. 101113690 (PASQANS2). The work of L. P. was funded by the European Union (ERC, QUANTHEM, No. 101114881). We acknowledge support\r\nby the Erwin Schrödinger International Institute for Mathematics and Physics (ESI).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"file_name":"2026_PhysicalReviewLetters_Votto.pdf","success":1,"file_size":500041,"checksum":"12b16ce2d49c62b2909da95121bfaadb","date_created":"2026-03-23T15:35:27Z","content_type":"application/pdf","access_level":"open_access","date_updated":"2026-03-23T15:35:27Z","file_id":"21491","creator":"dernst","relation":"main_file"}],"date_published":"2026-03-04T00:00:00Z","volume":136,"external_id":{"arxiv":["2507.12550"]},"author":[{"last_name":"Votto","full_name":"Votto, Matteo","first_name":"Matteo"},{"first_name":"Marko","orcid":"0000-0003-0038-7068","full_name":"Ljubotina, Marko","id":"F75EE9BE-5C90-11EA-905D-16643DDC885E","last_name":"Ljubotina"},{"first_name":"Cécilia","last_name":"Lancien","full_name":"Lancien, Cécilia"},{"first_name":"J. Ignacio","last_name":"Cirac","full_name":"Cirac, J. Ignacio"},{"full_name":"Zoller, Peter","last_name":"Zoller","first_name":"Peter"},{"first_name":"Maksym","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn"},{"full_name":"Piroli, Lorenzo","last_name":"Piroli","first_name":"Lorenzo"},{"first_name":"Benoît","full_name":"Vermersch, Benoît","last_name":"Vermersch"}],"ddc":["530"],"abstract":[{"lang":"eng","text":"We present and test a protocol to learn the matrix-product operator (MPO) representation of an experimentally prepared quantum state. The protocol takes as input classical shadows corresponding to local randomized measurements, and outputs the tensors of an MPO maximizing a suitably defined fidelity with the experimental state. The tensor optimization is carried out sequentially, similarly to the well-known density matrix renormalization group algorithm. Our approach is provably efficient under certain technical conditions expected to be met in short-range correlated states and in typical noisy experimental settings. Under the same conditions, we also provide an efficient scheme to estimate fidelities between the learned and the experimental states. We experimentally demonstrate our protocol by learning entangled quantum states of up to N = 96 qubits in a superconducting quantum processor. Our method upgrades classical shadows to large-scale quantum computation and simulation experiments."}],"oa":1,"file_date_updated":"2026-03-23T15:35:27Z","article_number":"090801","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","citation":{"ista":"Votto M, Ljubotina M, Lancien C, Cirac JI, Zoller P, Serbyn M, Piroli L, Vermersch B. 2026. Learning mixed quantum states in large-scale experiments. Physical Review Letters. 136(9), 090801.","mla":"Votto, Matteo, et al. “Learning Mixed Quantum States in Large-Scale Experiments.” <i>Physical Review Letters</i>, vol. 136, no. 9, 090801, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/rbg2-f61m\">10.1103/rbg2-f61m</a>.","apa":"Votto, M., Ljubotina, M., Lancien, C., Cirac, J. I., Zoller, P., Serbyn, M., … Vermersch, B. (2026). Learning mixed quantum states in large-scale experiments. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/rbg2-f61m\">https://doi.org/10.1103/rbg2-f61m</a>","chicago":"Votto, Matteo, Marko Ljubotina, Cécilia Lancien, J. Ignacio Cirac, Peter Zoller, Maksym Serbyn, Lorenzo Piroli, and Benoît Vermersch. “Learning Mixed Quantum States in Large-Scale Experiments.” <i>Physical Review Letters</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/rbg2-f61m\">https://doi.org/10.1103/rbg2-f61m</a>.","short":"M. Votto, M. Ljubotina, C. Lancien, J.I. Cirac, P. Zoller, M. Serbyn, L. Piroli, B. Vermersch, Physical Review Letters 136 (2026).","ieee":"M. Votto <i>et al.</i>, “Learning mixed quantum states in large-scale experiments,” <i>Physical Review Letters</i>, vol. 136, no. 9. American Physical Society, 2026.","ama":"Votto M, Ljubotina M, Lancien C, et al. Learning mixed quantum states in large-scale experiments. <i>Physical Review Letters</i>. 2026;136(9). doi:<a href=\"https://doi.org/10.1103/rbg2-f61m\">10.1103/rbg2-f61m</a>"},"quality_controlled":"1","date_created":"2026-03-23T14:56:32Z","day":"04","intvolume":"       136","doi":"10.1103/rbg2-f61m","arxiv":1,"type":"journal_article","publisher":"American Physical Society","publication_status":"published","oa_version":"Published Version","OA_type":"hybrid","PlanS_conform":"1","month":"03","article_type":"original","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"MaSe"}],"title":"Learning mixed quantum states in large-scale experiments","date_updated":"2026-03-23T15:39:34Z","OA_place":"publisher","publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"_id":"21480"},{"year":"2026","language":[{"iso":"eng"}],"publication":"Physical Review Research","volume":8,"author":[{"full_name":"Hübl, Maximilian","last_name":"Hübl","id":"5eb8629e-15b2-11ec-abd3-e6f3e5e01f32","first_name":"Maximilian"},{"first_name":"Carl Peter","id":"EB352CD2-F68A-11E9-89C5-A432E6697425","last_name":"Goodrich","orcid":"0000-0002-1307-5074","full_name":"Goodrich, Carl Peter"}],"file":[{"file_size":2680924,"success":1,"file_name":"2026_PhysicalReviewResearch_Huebl.pdf","date_created":"2026-03-23T15:53:29Z","content_type":"application/pdf","access_level":"open_access","checksum":"6d8a68e4a19f8dad5abdf75f72316f3d","date_updated":"2026-03-23T15:53:29Z","relation":"main_file","file_id":"21493","creator":"dernst"}],"date_published":"2026-03-05T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","acknowledgement":"We thank Maitane Muñoz-Basagoiti for helpful discussions. The research was supported by the Gesellschaft für Forschungsförderung Niederösterreich under Project No. FTI23-G-011.","DOAJ_listed":"1","has_accepted_license":"1","article_number":"L012054","article_processing_charge":"Yes","oa":1,"file_date_updated":"2026-03-23T15:53:29Z","abstract":[{"lang":"eng","text":"Controlling the size and shape of assembled structures is a fundamental challenge in self-assembly and is highly relevant in material design and biology. Here, we show that specific but promiscuous short-range binding interactions make it possible to economically assemble linear filaments of user-defined length. Our approach leads to independent control over the mean and width of the filament size distribution and allows us to smoothly explore design trade-offs between assembly quality (spread in size) and cost (number of particle species). We employ a simple hierarchical assembly protocol to minimize assembly times and show that multiple stages of hierarchy make it possible to extend our approach to the assembly of higher-dimensional structures. Our work provides a conceptually simple solution to size control that is applicable to a broad range of systems, from DNA nanoparticles to supramolecular polymers and beyond."}],"ddc":["530"],"doi":"10.1103/68rs-3qgn","intvolume":"         8","day":"05","corr_author":"1","quality_controlled":"1","citation":{"ista":"Hübl M, Goodrich CP. 2026. Entropic size control of self-assembled filaments. Physical Review Research. 8, L012054.","apa":"Hübl, M., &#38; Goodrich, C. P. (2026). Entropic size control of self-assembled filaments. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/68rs-3qgn\">https://doi.org/10.1103/68rs-3qgn</a>","mla":"Hübl, Maximilian, and Carl Peter Goodrich. “Entropic Size Control of Self-Assembled Filaments.” <i>Physical Review Research</i>, vol. 8, L012054, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/68rs-3qgn\">10.1103/68rs-3qgn</a>.","chicago":"Hübl, Maximilian, and Carl Peter Goodrich. “Entropic Size Control of Self-Assembled Filaments.” <i>Physical Review Research</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/68rs-3qgn\">https://doi.org/10.1103/68rs-3qgn</a>.","short":"M. Hübl, C.P. Goodrich, Physical Review Research 8 (2026).","ieee":"M. Hübl and C. P. Goodrich, “Entropic size control of self-assembled filaments,” <i>Physical Review Research</i>, vol. 8. American Physical Society, 2026.","ama":"Hübl M, Goodrich CP. Entropic size control of self-assembled filaments. <i>Physical Review Research</i>. 2026;8. doi:<a href=\"https://doi.org/10.1103/68rs-3qgn\">10.1103/68rs-3qgn</a>"},"date_created":"2026-03-23T14:58:31Z","oa_version":"Published Version","type":"journal_article","publication_status":"published","publisher":"American Physical Society","article_type":"original","month":"03","project":[{"grant_number":"FTI23-G-011","name":"Dynamically reconfigurable self-assembly with triangular DNA-origami bricks","_id":"8dd93da8-16d5-11f0-9cad-d2c70200d9a5"}],"OA_type":"gold","date_updated":"2026-03-23T15:59:11Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Entropic size control of self-assembled filaments","department":[{"_id":"CaGo"},{"_id":"GradSch"}],"_id":"21482","publication_identifier":{"eissn":["2643-1564"]},"OA_place":"publisher"},{"title":"Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for auxin canalization","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"JiFr"}],"date_updated":"2026-03-24T08:36:40Z","OA_place":"publisher","acknowledged_ssus":[{"_id":"MassSpec"},{"_id":"Bio"},{"_id":"LifeSc"}],"publication_identifier":{"issn":["0960-9822"]},"_id":"21490","pmid":1,"publisher":"Elsevier","publication_status":"published","type":"journal_article","oa_version":"Published Version","OA_type":"hybrid","PlanS_conform":"1","month":"03","project":[{"grant_number":"101142681","name":"Cyclic nucleotides as second messengers in plants","_id":"8f347782-16d5-11f0-9cad-8c19706ee739"},{"_id":"bd906599-d553-11ed-ba76-abf8547645d7","grant_number":"E271","name":"Identification of a novel regulator in auxin canalization"}],"article_type":"original","ddc":["580"],"abstract":[{"text":"Auxin canalization is a self-organizing process that governs the flexible formation of vasculature by reinforcing the formation of auxin transport channels. A key prerequisite is the feedback between auxin signaling and directional auxin transport, mediated by PIN transporters. Despite the developmental importance of canalization, the molecular components linking auxin perception to the regulation of PIN auxin transporters remain poorly understood. Here, we identify TOW, a novel and essential component of auxin canalization that links intracellular auxin signaling with cell surface auxin perception. TOW is regulated downstream of TIR1/AFB-Aux/IAA-WRKY23 transcriptional auxin signaling. tow mutants exhibit defects in regeneration and de novo vasculature formation, along with impaired formation of polarized, PIN-expressing auxin channels. At the subcellular level, these mutants display disrupted auxin-induced PIN polarization and altered PIN endocytic trafficking dynamics. TOW localizes predominantly to the plasma membrane, where it interacts with receptor-like kinases involved in auxin canalization, including the TMK1 auxin co-receptor and the CAMEL-CANAR complex. TOW promotes PIN interaction with these kinases and stabilizes PINs at the cell surface. Together, our findings identify TOW as a molecular link between intracellular and cell surface auxin signaling mechanisms that converge on PIN trafficking and polarity, providing new insights into how auxin signaling regulates directional auxin transport for the self-organizing formation of vasculature during flexible plant development.","lang":"eng"}],"oa":1,"file_date_updated":"2026-03-24T08:34:37Z","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","quality_controlled":"1","citation":{"ama":"Li M, Rydza N, Mazur E, Molnar G, Nodzyński T, Friml J. Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for auxin canalization. <i>Current Biology</i>. 2026;36(6):1468-1480.e6. doi:<a href=\"https://doi.org/10.1016/j.cub.2026.02.023\">10.1016/j.cub.2026.02.023</a>","ieee":"M. Li, N. Rydza, E. Mazur, G. Molnar, T. Nodzyński, and J. Friml, “Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for auxin canalization,” <i>Current Biology</i>, vol. 36, no. 6. Elsevier, p. 1468–1480.e6, 2026.","short":"M. Li, N. Rydza, E. Mazur, G. Molnar, T. Nodzyński, J. Friml, Current Biology 36 (2026) 1468–1480.e6.","ista":"Li M, Rydza N, Mazur E, Molnar G, Nodzyński T, Friml J. 2026. Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for auxin canalization. Current Biology. 36(6), 1468–1480.e6.","mla":"Li, Mingyue, et al. “Receptor-like-Kinase-Interacting Protein TOW Stabilizes PIN Transporters for Auxin Canalization.” <i>Current Biology</i>, vol. 36, no. 6, Elsevier, 2026, p. 1468–1480.e6, doi:<a href=\"https://doi.org/10.1016/j.cub.2026.02.023\">10.1016/j.cub.2026.02.023</a>.","apa":"Li, M., Rydza, N., Mazur, E., Molnar, G., Nodzyński, T., &#38; Friml, J. (2026). Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for auxin canalization. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2026.02.023\">https://doi.org/10.1016/j.cub.2026.02.023</a>","chicago":"Li, Mingyue, Nikola Rydza, Ewa Mazur, Gergely Molnar, Tomasz Nodzyński, and Jiří Friml. “Receptor-like-Kinase-Interacting Protein TOW Stabilizes PIN Transporters for Auxin Canalization.” <i>Current Biology</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.cub.2026.02.023\">https://doi.org/10.1016/j.cub.2026.02.023</a>."},"date_created":"2026-03-23T15:11:16Z","day":"23","corr_author":"1","intvolume":"        36","doi":"10.1016/j.cub.2026.02.023","language":[{"iso":"eng"}],"publication":"Current Biology","page":"1468-1480.e6","issue":"6","year":"2026","acknowledgement":"We thank Dr. Z. Ge (ISTA) for providing vectors for the CRISPR-Cas9 system, Dr. Armel Nicolas and Dr. Bella Bruszel for phosphoproteomic analysis, Prof. Michael Wrzaczek (Czech Academy of Sciences, Czechia) for valuable suggestions, and Prof. Maciek Adamowski (University of Gdańsk) for technical assistance. We also acknowledge the support of the Mass Spectrometry and Proteomics Facility, the Imaging & Optics Facility, and the Lab Support Facility at the Institute of Science and Technology Austria. This research was supported by the Scientific Service Units (SSU) of ISTA, utilizing resources provided by the Imaging & Optics Facility (IOF) and the Lab Support Facility (LSF). The work conducted by the Friml group was funded by the European Research Council (ERC) under grant agreement no. 101142681 (CYNIPS) and by the Austrian Science Fund (FWF) under project ESP271. We acknowledge the core facility CELLIM supported by MEYS CR (LM2023050 Czech-BioImaging) and the Plant Sciences Core Facility of CEITEC Masaryk University. E.M. received support from the National Science Centre (NCN), Poland, through the OPUS call within the Weave programme (grant no. 2021/43/I/NZ1/01835). T.N. received support from TowArds Next GENeration Crops, reg. no. CZ.02.01.01/00/22_008/0004581 of the ERDF Programme Johannes Amos Comenius.","status":"public","file":[{"date_created":"2026-03-24T08:34:37Z","content_type":"application/pdf","access_level":"open_access","checksum":"fe6c41fdab58a55df5f2a5860c02acdc","file_size":12986894,"file_name":"2026_CurrentBiology_Li.pdf","success":1,"relation":"main_file","file_id":"21496","creator":"dernst","date_updated":"2026-03-24T08:34:37Z"}],"date_published":"2026-03-23T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":36,"external_id":{"pmid":["41831441"]},"author":[{"first_name":"Mingyue","full_name":"Li, Mingyue","last_name":"Li","id":"01f96916-0235-11eb-9379-a323192643b7"},{"full_name":"Rydza, Nikola","last_name":"Rydza","first_name":"Nikola"},{"full_name":"Mazur, Ewa","last_name":"Mazur","first_name":"Ewa"},{"first_name":"Gergely","id":"34F1AF46-F248-11E8-B48F-1D18A9856A87","last_name":"Molnar","full_name":"Molnar, Gergely"},{"full_name":"Nodzyński, Tomasz","last_name":"Nodzyński","first_name":"Tomasz"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}]},{"oa":1,"abstract":[{"lang":"eng","text":"Sex-chromosome systems are highly variable across animals, but how they transition from one to another is not well understood. Diptera have undergone multiple sex-chromosome turnovers and expansions while maintaining their general chromosomal content, which makes them an ideal clade to study such transitions. We analyzed more than 100 dipteran whole-genome assemblies and identified 4 new lineages that underwent sex-chromosome turnover (in addition to the 5 previously reported). We find that the majority of turnovers happened in the group Schizophora, which tend to have fewer genes on Muller element F (the chromosome homologous to the ancestral insect X chromosome) than lower dipterans, a factor previously hypothesized to facilitate turnover. Most derived X chromosomes have higher GC content than autosomes, consistent with a high prevalence of male achiasmy in Diptera. In addition, an excess of gene movement out of the X is detected for most of these new X chromosomes, and many of these moved genes have high testis expression in Drosophila, suggesting that out-of-X gene movement contributes to the long-term demasculinization of X chromosomes."}],"ddc":["570"],"DOAJ_listed":"1","has_accepted_license":"1","article_number":"qrag003","article_processing_charge":"Yes","corr_author":"1","day":"12","citation":{"apa":"Layana Franco, L. A., Toups, M. A., &#38; Vicoso, B. (2026). Causes and consequences of sex-chromosome turnovers in Diptera. <i>Evolution Letters</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/evlett/qrag003\">https://doi.org/10.1093/evlett/qrag003</a>","mla":"Layana Franco, Lorena Alexandra, et al. “Causes and Consequences of Sex-Chromosome Turnovers in Diptera.” <i>Evolution Letters</i>, qrag003, Oxford University Press, 2026, doi:<a href=\"https://doi.org/10.1093/evlett/qrag003\">10.1093/evlett/qrag003</a>.","chicago":"Layana Franco, Lorena Alexandra, Melissa A Toups, and Beatriz Vicoso. “Causes and Consequences of Sex-Chromosome Turnovers in Diptera.” <i>Evolution Letters</i>. Oxford University Press, 2026. <a href=\"https://doi.org/10.1093/evlett/qrag003\">https://doi.org/10.1093/evlett/qrag003</a>.","ista":"Layana Franco LA, Toups MA, Vicoso B. 2026. Causes and consequences of sex-chromosome turnovers in Diptera. Evolution Letters., qrag003.","ieee":"L. A. Layana Franco, M. A. Toups, and B. Vicoso, “Causes and consequences of sex-chromosome turnovers in Diptera,” <i>Evolution Letters</i>. Oxford University Press, 2026.","short":"L.A. Layana Franco, M.A. Toups, B. Vicoso, Evolution Letters (2026).","ama":"Layana Franco LA, Toups MA, Vicoso B. Causes and consequences of sex-chromosome turnovers in Diptera. <i>Evolution Letters</i>. 2026. doi:<a href=\"https://doi.org/10.1093/evlett/qrag003\">10.1093/evlett/qrag003</a>"},"quality_controlled":"1","date_created":"2026-03-23T15:05:42Z","doi":"10.1093/evlett/qrag003","publication":"Evolution Letters","language":[{"iso":"eng"}],"year":"2026","status":"public","acknowledgement":"This work was supported by a grant from the Austrian Science Fund (FWF, grant number PAT 8748323) to B.V. We thank the Vicoso group for their feedback on an early version of the manuscript. We are grateful to Kamil Jaron and Julia Gries for helpful discussions and for sharing their unpublished work. Computational resources and support were provided by the Scientific Computing Unit at ISTA.","author":[{"first_name":"Lorena Alexandra","last_name":"Layana Franco","id":"02814589-eb8f-11eb-b029-a70074f3f18f","orcid":"0000-0002-1253-6297","full_name":"Layana Franco, Lorena Alexandra"},{"orcid":"0000-0002-9752-7380","full_name":"Toups, Melissa A","id":"4E099E4E-F248-11E8-B48F-1D18A9856A87","last_name":"Toups","first_name":"Melissa A"},{"full_name":"Vicoso, Beatriz","orcid":"0000-0002-4579-8306","last_name":"Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","first_name":"Beatriz"}],"date_published":"2026-03-12T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"BeVi"},{"_id":"GradSch"}],"title":"Causes and consequences of sex-chromosome turnovers in Diptera","date_updated":"2026-03-24T07:14:08Z","publication_identifier":{"eissn":["2056-3744"]},"OA_place":"publisher","_id":"21486","oa_version":"Published Version","type":"journal_article","publication_status":"epub_ahead","publisher":"Oxford University Press","OA_type":"gold","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/evlett/qrag003"}],"article_type":"original","month":"03","project":[{"grant_number":"PAT 8748323","name":"Sex chromosomes in evolution and development","_id":"8ed82125-16d5-11f0-9cad-fbcae312235b"}]},{"day":"14","corr_author":"1","citation":{"ieee":"M. M. Elkner, “On involutions of minuscule Kirillov algebras induced by real structures,” <i>Transformation Groups</i>. Springer Nature, 2026.","short":"M.M. Elkner, Transformation Groups (2026).","ama":"Elkner MM. On involutions of minuscule Kirillov algebras induced by real structures. <i>Transformation Groups</i>. 2026. doi:<a href=\"https://doi.org/10.1007/s00031-026-09958-y\">10.1007/s00031-026-09958-y</a>","mla":"Elkner, Mischa M. “On Involutions of Minuscule Kirillov Algebras Induced by Real Structures.” <i>Transformation Groups</i>, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1007/s00031-026-09958-y\">10.1007/s00031-026-09958-y</a>.","chicago":"Elkner, Mischa M. “On Involutions of Minuscule Kirillov Algebras Induced by Real Structures.” <i>Transformation Groups</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1007/s00031-026-09958-y\">https://doi.org/10.1007/s00031-026-09958-y</a>.","apa":"Elkner, M. M. (2026). On involutions of minuscule Kirillov algebras induced by real structures. <i>Transformation Groups</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00031-026-09958-y\">https://doi.org/10.1007/s00031-026-09958-y</a>","ista":"Elkner MM. 2026. On involutions of minuscule Kirillov algebras induced by real structures. Transformation Groups."},"date_created":"2026-03-23T15:10:43Z","quality_controlled":"1","doi":"10.1007/s00031-026-09958-y","oa":1,"ddc":["510"],"abstract":[{"lang":"eng","text":"We study Kirillov algebras attached to minuscule highest weight representations of semisimple Lie algebras. They can be viewed as equivariant cohomology algebras of partial flag varieties. Real structures on the varieties then induce involutions of these algebras. We describe how these involutions act on the spectra of minuscule Kirillov algebras, and model the fixed points via the equivariant cohomology of real partial flag varieties. We then use this model to characterise freeness of the fixed point coordinate ring over the appropriate base. As an application, we recover a q = -1 phenomenon of Stembridge in the minuscule case by geometric means."}],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","acknowledgement":"I would like to thank Tamás Hausel for introducing me to this area of mathematics and for his constant guidance. I would also like to thank Jakub Löwit and Miguel González for fruitful discussions and many helpful comments on this paper. This work was done during the author’s PhD studies at the Institute of Science and Technology Austria (ISTA). It was funded by the Austrian Science Fund (FWF) 10.55776/P35847. Open access funding provided by Institute of Science and Technology (IST Austria). ","status":"public","author":[{"first_name":"Mischa M","full_name":"Elkner, Mischa M","last_name":"Elkner","id":"477faa59-080d-11ed-979a-c693ab7638ab"}],"external_id":{"arxiv":["2411.16270"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2026-03-14T00:00:00Z","language":[{"iso":"eng"}],"publication":"Transformation Groups","year":"2026","publication_identifier":{"eissn":["1531-586X"],"issn":["1083-4362"]},"_id":"21489","department":[{"_id":"TaHa"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"On involutions of minuscule Kirillov algebras induced by real structures","date_updated":"2026-03-24T08:26:10Z","main_file_link":[{"url":"https://doi.org/10.1007/s00031-026-09958-y","open_access":"1"}],"month":"03","project":[{"grant_number":"P35847","name":"Geometry of the tip of the global nilpotent cone","_id":"34b2c9cb-11ca-11ed-8bc3-a50ba74ca4a3"}],"arxiv":1,"oa_version":"None","publisher":"Springer Nature","type":"journal_article","publication_status":"epub_ahead"},{"page":"160","language":[{"iso":"eng"}],"year":"2026","status":"public","date_published":"2026-03-04T00:00:00Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","file":[{"date_updated":"2026-03-04T08:56:15Z","file_id":"21394","creator":"mdvorak","relation":"main_file","file_name":"2026_Dvorak_Martin_Thesis.pdf","success":1,"file_size":1771231,"checksum":"cface6dc18152680962b5361575f6e4f","date_created":"2026-03-04T08:56:15Z","content_type":"application/pdf","access_level":"open_access"},{"file_size":864585,"file_name":"2026_Dvorak_Martin_Thesis.docx","date_created":"2026-03-04T09:03:37Z","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","access_level":"closed","checksum":"290ddfacfb7e07fb07e6f0b334e67c90","date_updated":"2026-03-04T09:03:37Z","relation":"source_file","file_id":"21395","creator":"mdvorak"}],"author":[{"first_name":"Martin","orcid":"0000-0001-5293-214X","full_name":"Dvorak, Martin","id":"40ED02A8-C8B4-11E9-A9C0-453BE6697425","last_name":"Dvorak"}],"ddc":["511","000"],"abstract":[{"lang":"eng","text":"This thesis documents a voyage towards truth and beauty via formal verification of theorems. To this end, we develop libraries in Lean 4 that present definitions and results from diverse areas of MathematiCS (i.e., Mathematics and Computer Science). The aim is to create code that is understandable, believable, useful, and elegant. The code should stand for itself as much as possible without a need for documentation; however, this text redundantly documents our code artifacts and provides additional context that isn’t present in the code. This thesis is written for readers who know Lean 4 but are not familiar with any of the topics presented. We manifest truth and beauty in three formalized areas of MathematiCS.\r\n\r\nWe formalize general grammars in Lean 4 and use grammars to show closure of the class of type-0 languages under four operations; union, reversal, concatenation, and the Kleene star.\r\n\r\nOur second stop is the theory of optimization. Farkas established that a system of linear inequalities has a solution if and only if we cannot obtain a contradiction by taking a linear combination of the inequalities. We state and formally prove several Farkas-like theorems over linearly ordered fields in Lean 4. Furthermore, we extend duality theory to the case when some coefficients are allowed to take “infinite values”. Additionally, we develop the basics of the theory of optimization in terms of the framework called General-Valued Constraint Satisfaction Problems, and we prove that, if a Rational-Valued Constraint Satisfaction Problem template has symmetric fractional polymorphisms of all arities, then its basic LP relaxation is tight.\r\n\r\nOur third stop is matroid theory. Seymour’s decomposition theorem is a hallmark result in matroid theory, presenting a structural characterization of the class of regular matroids. We aim to formally verify Seymour’s theorem in Lean 4. First, we build a library for working with totally unimodular matrices. We define binary matroids and their standard representations, and we prove that they form a matroid in the sense how Mathlib defines matroids. We define regular matroids to be matroids for which there exists a full representation rational matrix that is totally unimodular, and we prove that all regular matroids are binary. We define 1-sum, 2-sum, and 3 sum of binary matroids as specific ways to compose their standard representation matrices. We prove that the 1-sum, the 2-sum, and the 3-sum of regular matroids are a regular matroid, which concludes the composition direction of the Seymour’s theorem. The (more difficult) decomposition direction remains unproved.\r\n\r\nIn the pursuit of truth, we focus on identifying the trusted code in each project and presenting it faithfully. We emphasize the readability and believability of definitions rather than choosing definitions that are easier to work with. In search for beauty, we focus on the philosophical framework of Roger Scruton, who emphasizes that beauty is not a mere decoration but, most importantly, beauty is the means for shaping our place in the world and a source of redemption, where it can be viewed as a substitute for religion."}],"file_date_updated":"2026-03-04T09:03:37Z","oa":1,"article_processing_charge":"No","has_accepted_license":"1","date_created":"2026-03-04T09:26:46Z","citation":{"chicago":"Dvorak, Martin. “Pursuit of Truth and Beauty in Lean 4 : Formally Verified Theory of Grammars, Optimization, Matroids.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-21393\">https://doi.org/10.15479/AT-ISTA-21393</a>.","mla":"Dvorak, Martin. <i>Pursuit of Truth and Beauty in Lean 4 : Formally Verified Theory of Grammars, Optimization, Matroids</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-21393\">10.15479/AT-ISTA-21393</a>.","apa":"Dvorak, M. (2026). <i>Pursuit of truth and beauty in Lean 4 : Formally verified theory of grammars, optimization, matroids</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-21393\">https://doi.org/10.15479/AT-ISTA-21393</a>","ista":"Dvorak M. 2026. Pursuit of truth and beauty in Lean 4 : Formally verified theory of grammars, optimization, matroids. Institute of Science and Technology Austria.","ama":"Dvorak M. Pursuit of truth and beauty in Lean 4 : Formally verified theory of grammars, optimization, matroids. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-21393\">10.15479/AT-ISTA-21393</a>","ieee":"M. Dvorak, “Pursuit of truth and beauty in Lean 4 : Formally verified theory of grammars, optimization, matroids,” Institute of Science and Technology Austria, 2026.","short":"M. Dvorak, Pursuit of Truth and Beauty in Lean 4 : Formally Verified Theory of Grammars, Optimization, Matroids, Institute of Science and Technology Austria, 2026."},"alternative_title":["ISTA Thesis"],"corr_author":"1","day":"04","related_material":{"record":[{"id":"13120","status":"public","relation":"part_of_dissertation"},{"status":"public","relation":"part_of_dissertation","id":"21398"},{"id":"20071","relation":"part_of_dissertation","status":"public"}],"link":[{"relation":"software","url":"https://github.com/madvorak/duality/tree/v3.5.0","description":"Full version of all definitions, statements, and proofs for Chapter 3.1 (Linear duality)"},{"relation":"software","url":"https://github.com/madvorak/vcsp/tree/v8.2.0","description":"Full version of all definitions, statements, and proofs for Chapter 3.2 (Valued Constraint Satisfaction Problems)"},{"relation":"software","description":"Full version of all definitions, statements, and proofs for Chapter 4 (Seymour project)","url":"https://github.com/Ivan-Sergeyev/seymour/tree/v1.2.0"},{"relation":"software","url":"https://github.com/madvorak/chomsky/tree/v1.2.0","description":"Full version of all definitions, statements, and proofs for Chapter 5 (Theory of grammars)"},{"description":"Old version (Lean 3) of the project about grammars","url":"https://github.com/madvorak/grammars","relation":"software"},{"url":"https://github.com/madvorak/preliminaries/blob/main/Preliminaries.lean","description":"Demonstration of (minimal) requirements for selected algebraic classes used in my Ph.D. thesis","relation":"software"}]},"doi":"10.15479/AT-ISTA-21393","degree_awarded":"PhD","publication_status":"published","type":"dissertation","publisher":"Institute of Science and Technology Austria","oa_version":"Published Version","supervisor":[{"first_name":"Vladimir","full_name":"Kolmogorov, Vladimir","last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Blanchette","full_name":"Blanchette, Jasmin","first_name":"Jasmin"}],"month":"03","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"GradSch"},{"_id":"VlKo"}],"title":"Pursuit of truth and beauty in Lean 4 : Formally verified theory of grammars, optimization, matroids","date_updated":"2026-03-27T12:37:00Z","OA_place":"repository","publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-074-9"]},"_id":"21393"},{"ec_funded":1,"_id":"21501","publication_identifier":{"eissn":["2691-3399"]},"OA_place":"publisher","date_updated":"2026-03-30T06:09:28Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"MaSe"}],"title":"Fragmentation, zero modes, and collective bound states in constrained models","article_type":"original","project":[{"_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","grant_number":"850899","call_identifier":"H2020","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control"}],"month":"03","PlanS_conform":"1","OA_type":"gold","oa_version":"Published Version","type":"journal_article","publisher":"American Physical Society","publication_status":"published","arxiv":1,"doi":"10.1103/sl79-1xgb","intvolume":"         7","corr_author":"1","day":"13","scopus_import":"1","quality_controlled":"1","citation":{"apa":"Nicolau Jimenez, E., Ljubotina, M., &#38; Serbyn, M. (2026). Fragmentation, zero modes, and collective bound states in constrained models. <i>PRX Quantum</i>. American Physical Society. <a href=\"https://doi.org/10.1103/sl79-1xgb\">https://doi.org/10.1103/sl79-1xgb</a>","mla":"Nicolau Jimenez, Eulalia, et al. “Fragmentation, Zero Modes, and Collective Bound States in Constrained Models.” <i>PRX Quantum</i>, vol. 7, 010352, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/sl79-1xgb\">10.1103/sl79-1xgb</a>.","chicago":"Nicolau Jimenez, Eulalia, Marko Ljubotina, and Maksym Serbyn. “Fragmentation, Zero Modes, and Collective Bound States in Constrained Models.” <i>PRX Quantum</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/sl79-1xgb\">https://doi.org/10.1103/sl79-1xgb</a>.","ista":"Nicolau Jimenez E, Ljubotina M, Serbyn M. 2026. Fragmentation, zero modes, and collective bound states in constrained models. PRX Quantum. 7, 010352.","ama":"Nicolau Jimenez E, Ljubotina M, Serbyn M. Fragmentation, zero modes, and collective bound states in constrained models. <i>PRX Quantum</i>. 2026;7. doi:<a href=\"https://doi.org/10.1103/sl79-1xgb\">10.1103/sl79-1xgb</a>","ieee":"E. Nicolau Jimenez, M. Ljubotina, and M. Serbyn, “Fragmentation, zero modes, and collective bound states in constrained models,” <i>PRX Quantum</i>, vol. 7. American Physical Society, 2026.","short":"E. Nicolau Jimenez, M. Ljubotina, M. Serbyn, PRX Quantum 7 (2026)."},"date_created":"2026-03-28T14:57:56Z","has_accepted_license":"1","DOAJ_listed":"1","article_processing_charge":"Yes","article_number":"010352","file_date_updated":"2026-03-30T06:08:07Z","oa":1,"abstract":[{"lang":"eng","text":"Kinetically constrained models were originally introduced to capture slow relaxation in glassy systems, where dynamics are hindered by local constraints instead of energy barriers. Their quantum counterparts have recently drawn attention for exhibiting highly degenerate eigenstates at zero energy—known as zero modes—stemming from chiral symmetry. Yet, the structure and implications of these zero modes remain poorly understood. In this work, we focus on the properties of the zero mode subspace in quantum kinetically constrained models with a U(1) particle-conservation symmetry. We use the U(1) East, which lacks inversion symmetry, and the inversion-symmetric U(1) East-West models to illustrate our two main results. First, we observe that the simultaneous presence of constraints and chiral symmetry generally leads to a parametric increase in the number of zero modes due to the fragmentation of the many-body\r\nHilbert space into disconnected sectors. Second, we generalize the concept of compact localized states from single-particle physics and introduce the notion of collective bound states, a special kind of nonergodic eigenstates that are robust to enlarging the system size. We formulate sufficient criteria for their existence, arguing that the degenerate zero mode subspace plays a central role, and demonstrate bound states in both example models and in a two-dimensional model, the U(1) North-East, and in the pairflip model, a system without particle conservation. Our results motivate a systematic study of bound states and their relation to ergodicity breaking, transport, and other properties of quantum kinetically constrained\r\nmodels. "}],"ddc":["530"],"author":[{"full_name":"Nicolau Jimenez, Eulalia","id":"04b4791c-8fd7-11ee-a7df-be2fdc569c48","last_name":"Nicolau Jimenez","first_name":"Eulalia"},{"first_name":"Marko","full_name":"Ljubotina, Marko","orcid":"0000-0003-0038-7068","id":"F75EE9BE-5C90-11EA-905D-16643DDC885E","last_name":"Ljubotina"},{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym","first_name":"Maksym"}],"external_id":{"arxiv":["2504.17627"]},"volume":7,"date_published":"2026-03-13T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"checksum":"d155ffa9e1a8275702149165f4bf963c","access_level":"open_access","content_type":"application/pdf","date_created":"2026-03-30T06:08:07Z","file_name":"2026_PRXQuantum_Nicolau.pdf","success":1,"file_size":1848724,"creator":"dernst","file_id":"21505","relation":"main_file","date_updated":"2026-03-30T06:08:07Z"}],"acknowledgement":"The authors acknowledge useful discussions with Berislav Buca. This work was supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement No. 850899). M.L. acknowledges support by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy—EXC-2111—390814868. This research was supported in part by grant NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP).","status":"public","year":"2026","language":[{"iso":"eng"}],"publication":"PRX Quantum"},{"doi":"10.1038/s41397-026-00399-0","intvolume":"        26","day":"09","citation":{"chicago":"Hajto, Jacek, Marcin Piechota, Ilse Krätschmer, Paula Konowalska, Gabriel E. Boyle, Douglas M. Fowler, Malgorzata Borczyk, and Michal Korostynski. “Computational Variant Predictors for Pharmacogenomics: From Evaluation of Single Alleles to Assessment of Adverse Drug Reactions to Antidepressants.” <i>Pharmacogenomics Journal</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41397-026-00399-0\">https://doi.org/10.1038/s41397-026-00399-0</a>.","mla":"Hajto, Jacek, et al. “Computational Variant Predictors for Pharmacogenomics: From Evaluation of Single Alleles to Assessment of Adverse Drug Reactions to Antidepressants.” <i>Pharmacogenomics Journal</i>, vol. 26, no. 2, 8, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41397-026-00399-0\">10.1038/s41397-026-00399-0</a>.","apa":"Hajto, J., Piechota, M., Krätschmer, I., Konowalska, P., Boyle, G. E., Fowler, D. M., … Korostynski, M. (2026). Computational variant predictors for pharmacogenomics: From evaluation of single alleles to assessment of adverse drug reactions to antidepressants. <i>Pharmacogenomics Journal</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41397-026-00399-0\">https://doi.org/10.1038/s41397-026-00399-0</a>","ista":"Hajto J, Piechota M, Krätschmer I, Konowalska P, Boyle GE, Fowler DM, Borczyk M, Korostynski M. 2026. Computational variant predictors for pharmacogenomics: From evaluation of single alleles to assessment of adverse drug reactions to antidepressants. Pharmacogenomics Journal. 26(2), 8.","ama":"Hajto J, Piechota M, Krätschmer I, et al. Computational variant predictors for pharmacogenomics: From evaluation of single alleles to assessment of adverse drug reactions to antidepressants. <i>Pharmacogenomics Journal</i>. 2026;26(2). doi:<a href=\"https://doi.org/10.1038/s41397-026-00399-0\">10.1038/s41397-026-00399-0</a>","ieee":"J. Hajto <i>et al.</i>, “Computational variant predictors for pharmacogenomics: From evaluation of single alleles to assessment of adverse drug reactions to antidepressants,” <i>Pharmacogenomics Journal</i>, vol. 26, no. 2. Springer Nature, 2026.","short":"J. Hajto, M. Piechota, I. Krätschmer, P. Konowalska, G.E. Boyle, D.M. Fowler, M. Borczyk, M. Korostynski, Pharmacogenomics Journal 26 (2026)."},"date_created":"2026-03-29T22:07:08Z","quality_controlled":"1","scopus_import":"1","has_accepted_license":"1","article_number":"8","article_processing_charge":"Yes (in subscription journal)","oa":1,"file_date_updated":"2026-03-30T07:04:08Z","abstract":[{"lang":"eng","text":"Currently, pharmacogenetics relies on partially annotated star alleles, leaving novel variants and complex haplotypes uninterpretable. Computational scoring frameworks could overcome these limitations. Here, we comprehensively evaluated the ability of existing (CADD, FATHMM-XF, PROVEAN, MutationAssessor, SIFT, PhyloP100, APF, APF2) and novel (PharmGScore and PharmMLScore) variant effect predictors to assess pharmacogenetic alleles in multiple scenarios. Altogether we analyzed 541 PharmVar alleles, high‑throughput CYP2C9 and CYP2C19 mutational maps, and 200 642 UK Biobank exomes linked with health records containing antidepressant treatment outcomes. Many evaluated tools, especially ensemble frameworks, matched or exceeded star allele classifications (ROC‑AUC up to 0.85 for allele definitions, 0.95 in vitro; TPR up to 0.99 for exomes) and accurately predicted severe antidepressant adverse events for carriers of deleterious variants in CYP2C19 (OR 1.20–1.35). Our findings show that computational predictors deliver star allele accuracy while overcoming their limitations. With additional validation, computational tools could enhance clinical decision frameworks by enabling continuous scoring, incorporating previously unknown variants, and providing genome-wide applicability."}],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","ddc":["570"],"volume":26,"author":[{"last_name":"Hajto","full_name":"Hajto, Jacek","first_name":"Jacek"},{"first_name":"Marcin","last_name":"Piechota","full_name":"Piechota, Marcin"},{"last_name":"Krätschmer","id":"30d4014e-7753-11eb-b44b-db6d61112e73","full_name":"Krätschmer, Ilse","orcid":"0000-0002-5636-9259","first_name":"Ilse"},{"last_name":"Konowalska","full_name":"Konowalska, Paula","first_name":"Paula"},{"full_name":"Boyle, Gabriel E.","last_name":"Boyle","first_name":"Gabriel E."},{"first_name":"Douglas M.","last_name":"Fowler","full_name":"Fowler, Douglas M."},{"full_name":"Borczyk, Malgorzata","last_name":"Borczyk","first_name":"Malgorzata"},{"first_name":"Michal","full_name":"Korostynski, Michal","last_name":"Korostynski"}],"external_id":{"pmid":["41803106"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"success":1,"file_name":"2026_PharmacogenomicsJour_Hajto.pdf","file_size":2618963,"checksum":"2fd3d7e48b779ac24245f6c35449b89a","content_type":"application/pdf","access_level":"open_access","date_created":"2026-03-30T07:04:08Z","date_updated":"2026-03-30T07:04:08Z","creator":"dernst","file_id":"21506","relation":"main_file"}],"date_published":"2026-03-09T00:00:00Z","acknowledgement":"This research has been conducted using the UK Biobank Resource under Application Number 62979. We are grateful to the UK Biobank and all its voluntary participants. This work used data provided by patients and collected by the NHS as part of their care and support.\r\n\r\nThis study was funded by the National Science Center, Poland: PRELUDIUM BIS-3 grant no. 2021/43/O/NZ7/01187 (development and benchmarking of variant scores) and SONATINA 5 grant 2021/40/C/NZ2/00218 (UKB analyses). Additional support came from the statutory funds of the Maj Institute of Pharmacology PAS. We gratefully acknowledge Poland’s high-performance Infrastructure PLGrid ACK Cyfronet AGH, for providing computer facilities and support within computational grant no PLG/2022/015861. DMF and GEB were funded by NIH grants NIH R35GM152106 and UM1HG011969.","status":"public","year":"2026","issue":"2","language":[{"iso":"eng"}],"publication":"Pharmacogenomics Journal","pmid":1,"_id":"21503","publication_identifier":{"issn":[" 1470-269X"],"eissn":["1473-1150"]},"OA_place":"publisher","date_updated":"2026-03-30T07:10:50Z","department":[{"_id":"MaRo"}],"tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"title":"Computational variant predictors for pharmacogenomics: From evaluation of single alleles to assessment of adverse drug reactions to antidepressants","article_type":"original","month":"03","OA_type":"hybrid","oa_version":"Published Version","publisher":"Springer Nature","type":"journal_article","publication_status":"published"},{"department":[{"_id":"AlMi"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"The human BAF chromatin remodeler processes nucleosomes bound by pioneer transcription factors OCT4–SOX2","date_updated":"2026-03-30T12:09:08Z","publication_identifier":{"issn":["1097-2765"]},"OA_place":"publisher","pmid":1,"_id":"21509","oa_version":"Published Version","publisher":"Elsevier","type":"journal_article","publication_status":"published","OA_type":"hybrid","PlanS_conform":"1","article_type":"original","month":"02","oa":1,"file_date_updated":"2026-03-30T12:04:38Z","ddc":["570"],"abstract":[{"lang":"eng","text":"Chromatin remodeling complexes mobilize nucleosomes and promote transcription factor (TF) binding. Using ensemble and single-molecule assays combined with cryo-electron microscopy (cryo-EM), we studied the interaction between pioneer TFs OCT4–SOX2 and the human BRG1/BRM-associated factor (BAF) complex on nucleosomes. BAF engages TF-bound substrates in two orientations, placing OCT4–SOX2 at either the remodeler ENTRY or EXIT site. At the ENTRY site, OCT4–SOX2 initially coexists with BAF without structural interference. However, continued DNA translocation is expected to cause collisions with bound TFs, which can trigger remodeling direction reversals or may induce TF dissociation. To accommodate TFs at the EXIT site, BAF undergoes structural rearrangements, and ensemble assays reveal a nucleosome subpopulation translocating away from TF-binding sites. Moreover, single-molecule experiments show that nucleosome-bound BAF frequently changes remodeling direction, and we identify an ADP-bound remodeler conformation as a potential intermediate. Together, these findings reveal key aspects of the conformational dynamics and remodeling outcomes underlying BAF processing of TF-bound nucleosomes."}],"has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"19","quality_controlled":"1","date_created":"2026-03-30T11:58:48Z","citation":{"chicago":"Weiss, Joscha, Luca Vecchia, David Domjan, Simone Cavadini, Anton Sabantsev, Georg Kempf, Ganesh R. Pathare, et al. “The Human BAF Chromatin Remodeler Processes Nucleosomes Bound by Pioneer Transcription Factors OCT4–SOX2.” <i>Molecular Cell</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.molcel.2026.01.021\">https://doi.org/10.1016/j.molcel.2026.01.021</a>.","apa":"Weiss, J., Vecchia, L., Domjan, D., Cavadini, S., Sabantsev, A., Kempf, G., … Thomä, N. H. (2026). The human BAF chromatin remodeler processes nucleosomes bound by pioneer transcription factors OCT4–SOX2. <i>Molecular Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.molcel.2026.01.021\">https://doi.org/10.1016/j.molcel.2026.01.021</a>","mla":"Weiss, Joscha, et al. “The Human BAF Chromatin Remodeler Processes Nucleosomes Bound by Pioneer Transcription Factors OCT4–SOX2.” <i>Molecular Cell</i>, vol. 86, no. 4, Elsevier, 2026, p. 625–639.e8, doi:<a href=\"https://doi.org/10.1016/j.molcel.2026.01.021\">10.1016/j.molcel.2026.01.021</a>.","ista":"Weiss J, Vecchia L, Domjan D, Cavadini S, Sabantsev A, Kempf G, Pathare GR, Brackmann K, Michael AK, Kater L, Hietter-Pfeiffer E, Haddawi M, Kuber UP, Mühlhäusser S, Grand RS, Stadler MB, Deindl S, Thomä NH. 2026. The human BAF chromatin remodeler processes nucleosomes bound by pioneer transcription factors OCT4–SOX2. Molecular Cell. 86(4), 625–639.e8.","short":"J. Weiss, L. Vecchia, D. Domjan, S. Cavadini, A. Sabantsev, G. Kempf, G.R. Pathare, K. Brackmann, A.K. Michael, L. Kater, E. Hietter-Pfeiffer, M. Haddawi, U.P. Kuber, S. Mühlhäusser, R.S. Grand, M.B. Stadler, S. Deindl, N.H. Thomä, Molecular Cell 86 (2026) 625–639.e8.","ieee":"J. Weiss <i>et al.</i>, “The human BAF chromatin remodeler processes nucleosomes bound by pioneer transcription factors OCT4–SOX2,” <i>Molecular Cell</i>, vol. 86, no. 4. Elsevier, p. 625–639.e8, 2026.","ama":"Weiss J, Vecchia L, Domjan D, et al. The human BAF chromatin remodeler processes nucleosomes bound by pioneer transcription factors OCT4–SOX2. <i>Molecular Cell</i>. 2026;86(4):625-639.e8. doi:<a href=\"https://doi.org/10.1016/j.molcel.2026.01.021\">10.1016/j.molcel.2026.01.021</a>"},"scopus_import":"1","doi":"10.1016/j.molcel.2026.01.021","intvolume":"        86","issue":"4","language":[{"iso":"eng"}],"page":"625-639.e8","publication":"Molecular Cell","year":"2026","acknowledgement":"We thank D. Hess, V. Iesmantavicius, and J. Seebacher (FMI Proteomics and Protein Analysis Facility) for mass spectrometry support; S. Smallwood, K. Shimada, D. Klein, and M. Schütz-Stoffregen for technical assistance; J. Côté and C. Lachance for critical discussions; and members of the Thomä lab for helpful feedback. Support for this work was provided to N.H.T. by the European Research Council under the European Union’s Horizon 2020 research program (NucEM, no. 884331), the Novartis Research Foundation, the Swiss National Science Foundation (SNF 31003A_179541, 310030_214852, and Sinergia CRSII5_186230), and the Swiss Cancer Research (KFS-4980-02-2020 and KFS-5933-08-2023). S.D. was supported by the European Research Council (DONUTS, no. 101092623), the Knut and Alice Wallenberg Foundation (2024.0012), the Cancerfonden (25 4453 Pj), and the Swedish Research Council (VR 03255). A.K.M. was supported by a Human Frontier Science Program Long-Term Fellowship, and L.V. was supported by an EMBO fellowship (ALTF 549-2021).","status":"public","volume":86,"author":[{"last_name":"Weiss","full_name":"Weiss, Joscha","first_name":"Joscha"},{"first_name":"Luca","last_name":"Vecchia","full_name":"Vecchia, Luca"},{"first_name":"David","full_name":"Domjan, David","last_name":"Domjan"},{"first_name":"Simone","full_name":"Cavadini, Simone","last_name":"Cavadini"},{"first_name":"Anton","last_name":"Sabantsev","full_name":"Sabantsev, Anton"},{"full_name":"Kempf, Georg","last_name":"Kempf","first_name":"Georg"},{"first_name":"Ganesh R.","last_name":"Pathare","full_name":"Pathare, Ganesh R."},{"last_name":"Brackmann","full_name":"Brackmann, Klaus","first_name":"Klaus"},{"orcid":"0000-0002-6080-839X","full_name":"Michael, Alicia","id":"6437c950-2a03-11ee-914d-d6476dd7b75c","last_name":"Michael","first_name":"Alicia"},{"full_name":"Kater, Lukas","last_name":"Kater","first_name":"Lukas"},{"first_name":"Eric","full_name":"Hietter-Pfeiffer, Eric","last_name":"Hietter-Pfeiffer"},{"first_name":"Mina","last_name":"Haddawi","full_name":"Haddawi, Mina"},{"last_name":"Kuber","full_name":"Kuber, Urja P.","first_name":"Urja P."},{"full_name":"Mühlhäusser, Sandra","last_name":"Mühlhäusser","first_name":"Sandra"},{"first_name":"Ralph S.","last_name":"Grand","full_name":"Grand, Ralph S."},{"full_name":"Stadler, Michael B.","last_name":"Stadler","first_name":"Michael B."},{"first_name":"Sebastian","last_name":"Deindl","full_name":"Deindl, Sebastian"},{"first_name":"Nicolas H.","last_name":"Thomä","full_name":"Thomä, Nicolas H."}],"external_id":{"pmid":["41679301"]},"file":[{"file_size":9786677,"file_name":"2026_MolecularCell_Weiss.pdf","success":1,"content_type":"application/pdf","access_level":"open_access","date_created":"2026-03-30T12:04:38Z","checksum":"e16a7315b64a706184b177ea1621523c","date_updated":"2026-03-30T12:04:38Z","relation":"main_file","creator":"dernst","file_id":"21510"}],"date_published":"2026-02-19T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"OA_type":"green","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2507.11387","open_access":"1"}],"article_type":"original","project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program"}],"month":"03","arxiv":1,"oa_version":"Preprint","type":"journal_article","publisher":"World Scientific Publishing","publication_status":"epub_ahead","publication_identifier":{"issn":["0218-2025"],"eissn":["1793-6314"]},"OA_place":"repository","ec_funded":1,"_id":"21504","title":"From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties","department":[{"_id":"JaMa"}],"date_updated":"2026-03-30T06:56:35Z","status":"public","acknowledgement":"This work has been written within the activities of GNCS and GNFM groups of INdAM (Italian\r\nNational Institute of High Mathematics). G.B. has been funded by the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 101034413. P.G. has been funded by the European Union - NextGenerationEU, in the framework of the GRINSGrowing Resilient, INclusive and Sustainable (GRINS PE00000018).","external_id":{"arxiv":["2507.11387"]},"author":[{"full_name":"Auricchio, Gennaro","last_name":"Auricchio","first_name":"Gennaro"},{"last_name":"Brigati","id":"63ff57e8-1fbb-11ee-88f2-f558ffc59cf1","full_name":"Brigati, Giovanni","first_name":"Giovanni"},{"last_name":"Giudici","full_name":"Giudici, Paolo","first_name":"Paolo"},{"last_name":"Toscani","full_name":"Toscani, Giuseppe","first_name":"Giuseppe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2026-03-14T00:00:00Z","language":[{"iso":"eng"}],"publication":"Mathematical Models and Methods in Applied Sciences","year":"2026","day":"14","scopus_import":"1","quality_controlled":"1","date_created":"2026-03-29T22:07:08Z","citation":{"ista":"Auricchio G, Brigati G, Giudici P, Toscani G. 2026. From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties. Mathematical Models and Methods in Applied Sciences.","chicago":"Auricchio, Gennaro, Giovanni Brigati, Paolo Giudici, and Giuseppe Toscani. “From Kinetic Theory to AI: A Rediscovery of High-Dimensional Divergences and Their Properties.” <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing, 2026. <a href=\"https://doi.org/10.1142/S0218202526410010\">https://doi.org/10.1142/S0218202526410010</a>.","apa":"Auricchio, G., Brigati, G., Giudici, P., &#38; Toscani, G. (2026). From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties. <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S0218202526410010\">https://doi.org/10.1142/S0218202526410010</a>","mla":"Auricchio, Gennaro, et al. “From Kinetic Theory to AI: A Rediscovery of High-Dimensional Divergences and Their Properties.” <i>Mathematical Models and Methods in Applied Sciences</i>, World Scientific Publishing, 2026, doi:<a href=\"https://doi.org/10.1142/S0218202526410010\">10.1142/S0218202526410010</a>.","ama":"Auricchio G, Brigati G, Giudici P, Toscani G. From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties. <i>Mathematical Models and Methods in Applied Sciences</i>. 2026. doi:<a href=\"https://doi.org/10.1142/S0218202526410010\">10.1142/S0218202526410010</a>","ieee":"G. Auricchio, G. Brigati, P. Giudici, and G. Toscani, “From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties,” <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing, 2026.","short":"G. Auricchio, G. Brigati, P. Giudici, G. Toscani, Mathematical Models and Methods in Applied Sciences (2026)."},"doi":"10.1142/S0218202526410010","oa":1,"abstract":[{"text":"Selecting an appropriate divergence measure is a critical aspect of machine learning, as it directly impacts model performance. Among the most widely used, we find the Kullback–Leibler (KL) divergence, originally introduced in kinetic theory as a measure of relative entropy between probability distributions. Just as in machine learning, the ability to quantify the proximity of probability distributions plays a central role in kinetic theory. In this paper, we present a comparative review of divergence measures rooted in kinetic theory, highlighting their theoretical foundations and exploring their potential applications in machine learning and artificial intelligence.","lang":"eng"}],"article_processing_charge":"No"},{"language":[{"iso":"eng"}],"publication":"Calculus of Variations and Partial Differential Equations","issue":"1","year":"2026","acknowledgement":"The author would like to thank Jan Maas for suggesting this project and for many helpful comments, Antonio Agresti, Lorenzo Dello Schiavo and Julian Fischer for several fruitful discussions, Oliver Tse for pointing out the reference [10], and the anonymous reviewer for carefully reading this manuscript and providing valuable suggestions. He also gratefully acknowledges support from the Austrian Science Fund (FWF) project 10.55776/F65.Open access funding provided by Institute of Science and Technology (IST Austria).","status":"public","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_published":"2026-01-01T00:00:00Z","file":[{"file_size":958382,"file_name":"2026_CalculusVariations_Quattrocchi.pdf","success":1,"date_created":"2026-01-05T12:36:39Z","content_type":"application/pdf","access_level":"open_access","checksum":"635370d64abaf444f50f5cca60bba1be","date_updated":"2026-01-05T12:36:39Z","relation":"main_file","file_id":"20945","creator":"dernst"}],"volume":65,"external_id":{"arxiv":["2403.07803"]},"author":[{"first_name":"Filippo","id":"3ebd6ba8-edfb-11eb-afb5-91a9745ba308","last_name":"Quattrocchi","orcid":"0009-0000-9773-1931","full_name":"Quattrocchi, Filippo"}],"ddc":["510"],"abstract":[{"text":"We prove the convergence of a modified Jordan–Kinderlehrer–Otto scheme to a solution\r\nto the Fokker–Planck equation in Ω e R^d with general—strictly positive and temporally\r\nconstant—Dirichlet boundary conditions. We work under mild assumptions on the domain,\r\nthe drift, and the initial datum. In the special case where Ω is an interval in R1, we prove\r\nthat such a solution is a gradient flow—curve of maximal slope—within a suitable space of\r\nmeasures, endowed with a modified Wasserstein distance. Our discrete scheme and modified\r\ndistance draw inspiration from contributions by A. Figalli and N. Gigli [J. Math. Pures\r\nAppl. 94, (2010), pp. 107–130], and J. Morales [J. Math. Pures Appl. 112, (2018), pp. 41–88]\r\non an optimal-transport approach to evolution equations with Dirichlet boundary conditions.\r\nSimilarly to these works, we allow the mass to flow from/to the boundary ∂Ω throughout\r\nthe evolution. However, our leading idea is to also keep track of the mass at the boundary\r\nby working with measures defined on the whole closure Ω . The driving functional is a\r\nmodification of the classical relative entropy that also makes use of the information at the\r\nboundary. As an intermediate result, when Ω is an interval in R1, we find a formula for the\r\ndescending slope of this geodesically nonconvex functional.","lang":"eng"}],"oa":1,"file_date_updated":"2026-01-05T12:36:39Z","article_number":"23","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","citation":{"mla":"Quattrocchi, Filippo. “Variational Structures for the Fokker-Planck Equation with General Dirichlet Boundary Conditions.” <i>Calculus of Variations and Partial Differential Equations</i>, vol. 65, no. 1, 23, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1007/s00526-025-03193-1\">10.1007/s00526-025-03193-1</a>.","apa":"Quattrocchi, F. (2026). Variational structures for the Fokker-Planck equation with general Dirichlet boundary conditions. <i>Calculus of Variations and Partial Differential Equations</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00526-025-03193-1\">https://doi.org/10.1007/s00526-025-03193-1</a>","chicago":"Quattrocchi, Filippo. “Variational Structures for the Fokker-Planck Equation with General Dirichlet Boundary Conditions.” <i>Calculus of Variations and Partial Differential Equations</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1007/s00526-025-03193-1\">https://doi.org/10.1007/s00526-025-03193-1</a>.","ista":"Quattrocchi F. 2026. Variational structures for the Fokker-Planck equation with general Dirichlet boundary conditions. Calculus of Variations and Partial Differential Equations. 65(1), 23.","ieee":"F. Quattrocchi, “Variational structures for the Fokker-Planck equation with general Dirichlet boundary conditions,” <i>Calculus of Variations and Partial Differential Equations</i>, vol. 65, no. 1. Springer Nature, 2026.","short":"F. Quattrocchi, Calculus of Variations and Partial Differential Equations 65 (2026).","ama":"Quattrocchi F. Variational structures for the Fokker-Planck equation with general Dirichlet boundary conditions. <i>Calculus of Variations and Partial Differential Equations</i>. 2026;65(1). doi:<a href=\"https://doi.org/10.1007/s00526-025-03193-1\">10.1007/s00526-025-03193-1</a>"},"date_created":"2025-12-29T12:06:26Z","quality_controlled":"1","scopus_import":"1","corr_author":"1","day":"01","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"20571"}]},"intvolume":"        65","doi":"10.1007/s00526-025-03193-1","arxiv":1,"publication_status":"published","publisher":"Springer Nature","type":"journal_article","oa_version":"Published Version","OA_type":"hybrid","PlanS_conform":"1","month":"01","project":[{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems"}],"article_type":"original","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Variational structures for the Fokker-Planck equation with general Dirichlet boundary conditions","department":[{"_id":"JaMa"}],"date_updated":"2026-04-07T08:37:46Z","OA_place":"publisher","publication_identifier":{"eissn":["1432-0835"],"issn":["0944-2669"]},"_id":"20865"},{"article_type":"original","month":"03","PlanS_conform":"1","OA_type":"diamond","oa_version":"Published Version","type":"journal_article","publication_status":"published","publisher":"EDP Sciences","arxiv":1,"_id":"21658","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"OA_place":"publisher","date_updated":"2026-04-07T09:01:44Z","department":[{"_id":"LiBu"},{"_id":"IlCa"},{"_id":"GradSch"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Near-degeneracy effects in quadrupolar mixed modes: From an asymptotic description to data fitting","external_id":{"arxiv":["2511.05314 "]},"author":[{"first_name":"Bastien Raymond Bernard","last_name":"Liagre","id":"662f1873-cab4-11f0-a719-8087d302868d","full_name":"Liagre, Bastien Raymond Bernard"},{"first_name":"Aayush A","last_name":"Desai","id":"502cfd30-32c1-11ee-a9a4-d8dad5c6739e","full_name":"Desai, Aayush A"},{"first_name":"Lukas","full_name":"Einramhof, Lukas","id":"f1497a1a-72ef-11ef-b75a-fd877bbf6e8c","last_name":"Einramhof"},{"first_name":"Lisa Annabelle","id":"d9edb345-f866-11ec-9b37-d119b5234501","last_name":"Bugnet","full_name":"Bugnet, Lisa Annabelle","orcid":"0000-0003-0142-4000"}],"volume":707,"date_published":"2026-03-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"checksum":"560cac19dc70184626b85e71a26ee22e","date_created":"2026-04-07T09:00:50Z","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"2026_AstronomyAstrophysics_Liagre.pdf","file_size":12287607,"file_id":"21664","creator":"dernst","relation":"main_file","date_updated":"2026-04-07T09:00:50Z"}],"acknowledgement":"We thank the referee for their careful and constructive report, which has substantially enhanced both the quality and clarity of the manuscript. L. Bugnet and L. Einramhof gratefully acknowledge support from the European Research Council (ERC) under the Horizon Europe programme (Calcifer; Starting Grant agreement N°101165631). While partially funded by the European Union, views and opinions expressed are, however, those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. The authors acknowledge the great support and feedback provided during the redaction of this article by Pr. Rafael García and Pr. Savita Mathur. We would also like to thank Dr. Emily Hatt for her insights on uncertainty estimates. The authors also thank the members of the Asteroseismology and Stellar Dynamics group of the Institute of Science and Technology Austria (ISTA) for very useful discussions: L. Barrault, S.B. Das, K. Smith. This paper includes data collected by the Kepler mission and obtained from the MAST data archive at the Space Telescope Science Institute (STScI). Funding for the Kepler mission is provided by the NASA Science Mission Directorate. STScI is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5–26555. Software: AstroPy (Astropy Collaboration 2013, 2018), Matplotlib (Hunter 2007), NumPy (Harris et al. 2020), SciPy (Virtanen et al. 2020), emcee (Foreman-Mackey et al. 2013), celerite (Foreman-Mackey et al. 2017), slepc4py (Dalcin et al. 2011; Hernandez et al. 2005), KADACS (García et al. 2011), sloscillations (Kuszlewicz et al. 2019, 2023).","status":"public","year":"2026","language":[{"iso":"eng"}],"publication":"Astronomy and Astrophysics","doi":"10.1051/0004-6361/202558023","intvolume":"       707","day":"01","corr_author":"1","scopus_import":"1","citation":{"short":"B.R.B. Liagre, A.A. Desai, L. Einramhof, L.A. Bugnet, Astronomy and Astrophysics 707 (2026).","ieee":"B. R. B. Liagre, A. A. Desai, L. Einramhof, and L. A. Bugnet, “Near-degeneracy effects in quadrupolar mixed modes: From an asymptotic description to data fitting,” <i>Astronomy and Astrophysics</i>, vol. 707. EDP Sciences, 2026.","ama":"Liagre BRB, Desai AA, Einramhof L, Bugnet LA. Near-degeneracy effects in quadrupolar mixed modes: From an asymptotic description to data fitting. <i>Astronomy and Astrophysics</i>. 2026;707. doi:<a href=\"https://doi.org/10.1051/0004-6361/202558023\">10.1051/0004-6361/202558023</a>","ista":"Liagre BRB, Desai AA, Einramhof L, Bugnet LA. 2026. Near-degeneracy effects in quadrupolar mixed modes: From an asymptotic description to data fitting. Astronomy and Astrophysics. 707, A321.","chicago":"Liagre, Bastien Raymond Bernard, Aayush A Desai, Lukas Einramhof, and Lisa Annabelle Bugnet. “Near-Degeneracy Effects in Quadrupolar Mixed Modes: From an Asymptotic Description to Data Fitting.” <i>Astronomy and Astrophysics</i>. EDP Sciences, 2026. <a href=\"https://doi.org/10.1051/0004-6361/202558023\">https://doi.org/10.1051/0004-6361/202558023</a>.","mla":"Liagre, Bastien Raymond Bernard, et al. “Near-Degeneracy Effects in Quadrupolar Mixed Modes: From an Asymptotic Description to Data Fitting.” <i>Astronomy and Astrophysics</i>, vol. 707, A321, EDP Sciences, 2026, doi:<a href=\"https://doi.org/10.1051/0004-6361/202558023\">10.1051/0004-6361/202558023</a>.","apa":"Liagre, B. R. B., Desai, A. A., Einramhof, L., &#38; Bugnet, L. A. (2026). Near-degeneracy effects in quadrupolar mixed modes: From an asymptotic description to data fitting. <i>Astronomy and Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202558023\">https://doi.org/10.1051/0004-6361/202558023</a>"},"quality_controlled":"1","date_created":"2026-04-05T22:01:32Z","has_accepted_license":"1","DOAJ_listed":"1","article_processing_charge":"No","article_number":"A321","file_date_updated":"2026-04-07T09:00:50Z","oa":1,"abstract":[{"text":"Dipolar (ℓ = 1) mixed modes have revealed a surprisingly weak differential rotation between the core and the envelope of evolved solar-like stars. Quadrupolar (ℓ = 2) mixed modes also contain information regarding internal dynamics but are very rarely characterised due to their low amplitude and the challenging identification of adjacent or overlapping rotationally split multiplets affected by near-degeneracy effects. We aim to extend the broadly used asymptotic seismic diagnostics beyond ℓ = 1 mixed modes by developing an analogue asymptotic description of ℓ = 2 mixed modes while explicitly accounting for near-degeneracy effects that distort their rotational multiplets. We have derived a new asymptotic formulation of near-degenerate mixed ℓ = 2 modes that describes off-diagonal terms representing the interaction between modes of adjacent radial orders. This formalism, expressed directly in the mixed-mode basis, provides analytical expressions for the near-degeneracy effects. We implemented the formalism within a global Bayesian mode-fitting framework for a direct fit of all ℓ = 0, 1, 2 modes in the power spectrum density. We were able to asymptotically model the asymmetric rotational splitting present in various radial orders of ℓ = 2 modes observed in young red giant stars without the need for any numerical stellar modelling. We applied our formalism to the Kepler target KIC 7341231, and it yielded core and envelope rotation rates consistent with previous numerical modelling while providing improved constraints from the global and model-independent approach. We also characterised the new target, KIC 8179973, measuring its rotation rate and mixed-mode parameters for the first time. As our framework relies on a direct global fit, it allows for much better precision on the asteroseismic parameters and rotation rate estimates than standard methods, yielding better constraints for rotation inversions. We have placed the first observational constraints on the asymptotic ℓ = 2 mixed-mode parameters (ΔΠ2, q2, and εg, 2), thus paving the way towards the use of asymptotic seismology beyond ℓ = 1 mixed modes.","lang":"eng"}],"ddc":["520"]}]