---
_id: '14443'
abstract:
- lang: eng
  text: "Importance  Climate change, pollution, urbanization, socioeconomic inequality,
    and psychosocial effects of the COVID-19 pandemic have caused massive changes
    in environmental conditions that affect brain health during the life span, both
    on a population level as well as on the level of the individual. How these environmental
    factors influence the brain, behavior, and mental illness is not well known.\r\nObservations
    \ A research strategy enabling population neuroscience to contribute to identify
    brain mechanisms underlying environment-related mental illness by leveraging innovative
    enrichment tools for data federation, geospatial observation, climate and pollution
    measures, digital health, and novel data integration techniques is described.
    This strategy can inform innovative treatments that target causal cognitive and
    molecular mechanisms of mental illness related to the environment. An example
    is presented of the environMENTAL Project that is leveraging federated cohort
    data of over 1.5 million European citizens and patients enriched with deep phenotyping
    data from large-scale behavioral neuroimaging cohorts to identify brain mechanisms
    related to environmental adversity underlying symptoms of depression, anxiety,
    stress, and substance misuse.\r\nConclusions and Relevance  This research will
    lead to the development of objective biomarkers and evidence-based interventions
    that will significantly improve outcomes of environment-related mental illness."
article_processing_charge: No
article_type: review
author:
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Vince D.
  full_name: Calhoun, Vince D.
  last_name: Calhoun
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Sylvane
  full_name: Desrivieres, Sylvane
  last_name: Desrivieres
- first_name: Ragnhild Eek
  full_name: Brandlistuen, Ragnhild Eek
  last_name: Brandlistuen
- first_name: Jianfeng
  full_name: Feng, Jianfeng
  last_name: Feng
- first_name: Soeren
  full_name: Hese, Soeren
  last_name: Hese
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Andre F.
  full_name: Marquand, Andre F.
  last_name: Marquand
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tamara
  full_name: Schikowski, Tamara
  last_name: Schikowski
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Bernd Carsten
  full_name: Stahl, Bernd Carsten
  last_name: Stahl
- first_name: Paul M.
  full_name: Thompson, Paul M.
  last_name: Thompson
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Lars
  full_name: Westlye, Lars
  last_name: Westlye
citation:
  ama: 'Schumann G, Andreassen OA, Banaschewski T, et al. Addressing global environmental
    challenges to mental health using population neuroscience: A review. <i>JAMA Psychiatry</i>.
    2023;80(10):1066-1074. doi:<a href="https://doi.org/10.1001/jamapsychiatry.2023.2996">10.1001/jamapsychiatry.2023.2996</a>'
  apa: 'Schumann, G., Andreassen, O. A., Banaschewski, T., Calhoun, V. D., Clinton,
    N., Desrivieres, S., … Westlye, L. (2023). Addressing global environmental challenges
    to mental health using population neuroscience: A review. <i>JAMA Psychiatry</i>.
    American Medical Association. <a href="https://doi.org/10.1001/jamapsychiatry.2023.2996">https://doi.org/10.1001/jamapsychiatry.2023.2996</a>'
  chicago: 'Schumann, Gunter, Ole A. Andreassen, Tobias Banaschewski, Vince D. Calhoun,
    Nicholas Clinton, Sylvane Desrivieres, Ragnhild Eek Brandlistuen, et al. “Addressing
    Global Environmental Challenges to Mental Health Using Population Neuroscience:
    A Review.” <i>JAMA Psychiatry</i>. American Medical Association, 2023. <a href="https://doi.org/10.1001/jamapsychiatry.2023.2996">https://doi.org/10.1001/jamapsychiatry.2023.2996</a>.'
  ieee: 'G. Schumann <i>et al.</i>, “Addressing global environmental challenges to
    mental health using population neuroscience: A review,” <i>JAMA Psychiatry</i>,
    vol. 80, no. 10. American Medical Association, pp. 1066–1074, 2023.'
  ista: 'Schumann G, Andreassen OA, Banaschewski T, Calhoun VD, Clinton N, Desrivieres
    S, Brandlistuen RE, Feng J, Hese S, Hitchen E, Hoffmann P, Jia T, Jirsa V, Marquand
    AF, Nees F, Nöthen MM, Novarino G, Polemiti E, Ralser M, Rapp M, Schepanski K,
    Schikowski T, Slater M, Sommer P, Stahl BC, Thompson PM, Twardziok S, Van Der
    Meer D, Walter H, Westlye L. 2023. Addressing global environmental challenges
    to mental health using population neuroscience: A review. JAMA Psychiatry. 80(10),
    1066–1074.'
  mla: 'Schumann, Gunter, et al. “Addressing Global Environmental Challenges to Mental
    Health Using Population Neuroscience: A Review.” <i>JAMA Psychiatry</i>, vol.
    80, no. 10, American Medical Association, 2023, pp. 1066–74, doi:<a href="https://doi.org/10.1001/jamapsychiatry.2023.2996">10.1001/jamapsychiatry.2023.2996</a>.'
  short: G. Schumann, O.A. Andreassen, T. Banaschewski, V.D. Calhoun, N. Clinton,
    S. Desrivieres, R.E. Brandlistuen, J. Feng, S. Hese, E. Hitchen, P. Hoffmann,
    T. Jia, V. Jirsa, A.F. Marquand, F. Nees, M.M. Nöthen, G. Novarino, E. Polemiti,
    M. Ralser, M. Rapp, K. Schepanski, T. Schikowski, M. Slater, P. Sommer, B.C. Stahl,
    P.M. Thompson, S. Twardziok, D. Van Der Meer, H. Walter, L. Westlye, JAMA Psychiatry
    80 (2023) 1066–1074.
date_created: 2023-10-22T22:01:14Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2025-09-09T13:11:20Z
day: '01'
department:
- _id: GaNo
doi: 10.1001/jamapsychiatry.2023.2996
external_id:
  isi:
  - '001093447000016'
  pmid:
  - '37610741'
intvolume: '        80'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
page: 1066-1074
pmid: 1
publication: JAMA Psychiatry
publication_identifier:
  eissn:
  - 2168-6238
publication_status: published
publisher: American Medical Association
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Addressing global environmental challenges to mental health using population
  neuroscience: A review'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 80
year: '2023'
...
---
_id: '14444'
abstract:
- lang: eng
  text: "We prove several results about substructures in Latin squares. First, we
    explain how to adapt our recent work on high-girth Steiner triple systems to the
    setting of Latin squares, resolving a conjecture of Linial that there exist Latin
    squares with arbitrarily high girth. As a consequence, we see that the number
    of order- n  Latin squares with no intercalate (i.e., no  2×2 Latin subsquare)
    is at least  (e−9/4n−o(n))n2. Equivalently,  P[N=0]≥e−n2/4−o(n2)=e−(1+o(1))EN\r\n
    , where  N is the number of intercalates in a uniformly random order- n Latin
    square. \r\nIn fact, extending recent work of Kwan, Sah, and Sawhney, we resolve
    the general large-deviation problem for intercalates in random Latin squares,
    up to constant factors in the exponent: for any constant  0<δ≤1 we have  P[N≤(1−δ)EN]=exp(−Θ(n2))
    and for any constant  δ>0 we have  P[N≥(1+δ)EN]=exp(−Θ(n4/3logn)). \r\nFinally,
    as an application of some new general tools for studying substructures in random
    Latin squares, we show that in almost all order- n Latin squares, the number of
    cuboctahedra (i.e., the number of pairs of possibly degenerate  2×2 submatrices
    with the same arrangement of symbols) is of order  n4, which is the minimum possible.
    As observed by Gowers and Long, this number can be interpreted as measuring ``how
    associative'' the quasigroup associated with the Latin square is."
acknowledgement: Sah and Sawhney were supported by NSF Graduate Research Fellowship
  Program DGE-1745302. Sah was supported by the PD Soros Fellowship. Simkin was supported
  by the Center of Mathematical Sciences and Applications at Harvard University.
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Matthew Alan
  full_name: Kwan, Matthew Alan
  id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
  last_name: Kwan
  orcid: 0000-0002-4003-7567
- first_name: Ashwin
  full_name: Sah, Ashwin
  last_name: Sah
- first_name: Mehtaab
  full_name: Sawhney, Mehtaab
  last_name: Sawhney
- first_name: Michael
  full_name: Simkin, Michael
  last_name: Simkin
citation:
  ama: Kwan MA, Sah A, Sawhney M, Simkin M. Substructures in Latin squares. <i>Israel
    Journal of Mathematics</i>. 2023;256(2):363-416. doi:<a href="https://doi.org/10.1007/s11856-023-2513-9">10.1007/s11856-023-2513-9</a>
  apa: Kwan, M. A., Sah, A., Sawhney, M., &#38; Simkin, M. (2023). Substructures in
    Latin squares. <i>Israel Journal of Mathematics</i>. Springer Nature. <a href="https://doi.org/10.1007/s11856-023-2513-9">https://doi.org/10.1007/s11856-023-2513-9</a>
  chicago: Kwan, Matthew Alan, Ashwin Sah, Mehtaab Sawhney, and Michael Simkin. “Substructures
    in Latin Squares.” <i>Israel Journal of Mathematics</i>. Springer Nature, 2023.
    <a href="https://doi.org/10.1007/s11856-023-2513-9">https://doi.org/10.1007/s11856-023-2513-9</a>.
  ieee: M. A. Kwan, A. Sah, M. Sawhney, and M. Simkin, “Substructures in Latin squares,”
    <i>Israel Journal of Mathematics</i>, vol. 256, no. 2. Springer Nature, pp. 363–416,
    2023.
  ista: Kwan MA, Sah A, Sawhney M, Simkin M. 2023. Substructures in Latin squares.
    Israel Journal of Mathematics. 256(2), 363–416.
  mla: Kwan, Matthew Alan, et al. “Substructures in Latin Squares.” <i>Israel Journal
    of Mathematics</i>, vol. 256, no. 2, Springer Nature, 2023, pp. 363–416, doi:<a
    href="https://doi.org/10.1007/s11856-023-2513-9">10.1007/s11856-023-2513-9</a>.
  short: M.A. Kwan, A. Sah, M. Sawhney, M. Simkin, Israel Journal of Mathematics 256
    (2023) 363–416.
date_created: 2023-10-22T22:01:14Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2025-09-09T13:08:47Z
day: '01'
department:
- _id: MaKw
doi: 10.1007/s11856-023-2513-9
external_id:
  arxiv:
  - '2202.05088'
  isi:
  - '001081646400001'
intvolume: '       256'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2202.05088
month: '09'
oa: 1
oa_version: Preprint
page: 363-416
publication: Israel Journal of Mathematics
publication_identifier:
  eissn:
  - 1565-8511
  issn:
  - 0021-2172
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Substructures in Latin squares
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 256
year: '2023'
...
---
_id: '14445'
abstract:
- lang: eng
  text: "We prove the following quantitative Borsuk–Ulam-type result (an equivariant
    analogue of Gromov’s Topological Overlap Theorem): Let X be a free ℤ/2-complex
    of dimension d with coboundary expansion at least ηk in dimension 0 ≤ k < d. Then
    for every equivariant map F: X →ℤ/2 ℝd, the fraction of d-simplices σ of X with
    0 ∈ F (σ) is at least 2−d Π d−1k=0ηk.\r\n\r\nAs an application, we show that for
    every sufficiently thick d-dimensional spherical building Y and every map f: Y
    → ℝ2d, we have f(σ) ∩ f(τ) ≠ ∅ for a constant fraction μd > 0 of pairs {σ, τ}
    of d-simplices of Y. In particular, such complexes are non-embeddable into ℝ2d,
    which proves a conjecture of Tancer and Vorwerk for sufficiently thick spherical
    buildings.\r\n\r\nWe complement these results by upper bounds on the coboundary
    expansion of two families of simplicial complexes; this indicates some limitations
    to the bounds one can obtain by straighforward applications of the quantitative
    Borsuk–Ulam theorem. Specifically, we prove\r\n\r\n• an upper bound of (d + 1)/2d
    on the normalized (d − 1)-th coboundary expansion constant of complete (d + 1)-partite
    d-dimensional complexes (under a mild divisibility assumption on the sizes of
    the parts); and\r\n\r\n• an upper bound of (d + 1)/2d + ε on the normalized (d
    − 1)-th coboundary expansion of the d-dimensional spherical building associated
    with GLd+2(Fq) for any ε > 0 and sufficiently large q. This disproves, in a rather
    strong sense, a conjecture of Lubotzky, Meshulam and Mozes."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
- first_name: Pascal
  full_name: Wild, Pascal
  id: 4C20D868-F248-11E8-B48F-1D18A9856A87
  last_name: Wild
citation:
  ama: Wagner U, Wild P. Coboundary expansion, equivariant overlap, and crossing numbers
    of simplicial complexes. <i>Israel Journal of Mathematics</i>. 2023;256(2):675-717.
    doi:<a href="https://doi.org/10.1007/s11856-023-2521-9">10.1007/s11856-023-2521-9</a>
  apa: Wagner, U., &#38; Wild, P. (2023). Coboundary expansion, equivariant overlap,
    and crossing numbers of simplicial complexes. <i>Israel Journal of Mathematics</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s11856-023-2521-9">https://doi.org/10.1007/s11856-023-2521-9</a>
  chicago: Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap,
    and Crossing Numbers of Simplicial Complexes.” <i>Israel Journal of Mathematics</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1007/s11856-023-2521-9">https://doi.org/10.1007/s11856-023-2521-9</a>.
  ieee: U. Wagner and P. Wild, “Coboundary expansion, equivariant overlap, and crossing
    numbers of simplicial complexes,” <i>Israel Journal of Mathematics</i>, vol. 256,
    no. 2. Springer Nature, pp. 675–717, 2023.
  ista: Wagner U, Wild P. 2023. Coboundary expansion, equivariant overlap, and crossing
    numbers of simplicial complexes. Israel Journal of Mathematics. 256(2), 675–717.
  mla: Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap, and
    Crossing Numbers of Simplicial Complexes.” <i>Israel Journal of Mathematics</i>,
    vol. 256, no. 2, Springer Nature, 2023, pp. 675–717, doi:<a href="https://doi.org/10.1007/s11856-023-2521-9">10.1007/s11856-023-2521-9</a>.
  short: U. Wagner, P. Wild, Israel Journal of Mathematics 256 (2023) 675–717.
corr_author: '1'
date_created: 2023-10-22T22:01:14Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2024-10-09T21:07:12Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1007/s11856-023-2521-9
external_id:
  isi:
  - '001081646400010'
file:
- access_level: open_access
  checksum: fbb05619fe4b650f341cc730425dd9c3
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-31T11:20:31Z
  date_updated: 2023-10-31T11:20:31Z
  file_id: '14475'
  file_name: 2023_IsraelJourMath_Wagner.pdf
  file_size: 623787
  relation: main_file
  success: 1
file_date_updated: 2023-10-31T11:20:31Z
has_accepted_license: '1'
intvolume: '       256'
isi: 1
issue: '2'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 675-717
publication: Israel Journal of Mathematics
publication_identifier:
  eissn:
  - 1565-8511
  issn:
  - 0021-2172
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coboundary expansion, equivariant overlap, and crossing numbers of simplicial
  complexes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 256
year: '2023'
...
---
_id: '14446'
abstract:
- lang: eng
  text: Recent work has paid close attention to the first principle of Granger causality,
    according to which cause precedes effect. In this context, the question may arise
    whether the detected direction of causality also reverses after the time reversal
    of unidirectionally coupled data. Recently, it has been shown that for unidirectionally
    causally connected autoregressive (AR) processes X → Y, after time reversal of
    data, the opposite causal direction Y → X is indeed detected, although typically
    as part of the bidirectional X↔ Y link. As we argue here, the answer is different
    when the measured data are not from AR processes but from linked deterministic
    systems. When the goal is the usual forward data analysis, cross-mapping-like
    approaches correctly detect X → Y, while Granger causality-like approaches, which
    should not be used for deterministic time series, detect causal independence X
    → Y. The results of backward causal analysis depend on the predictability of the
    reversed data. Unlike AR processes, observables from deterministic dynamical systems,
    even complex nonlinear ones, can be predicted well forward, while backward predictions
    can be difficult (notably when the time reversal of a function leads to one-to-many
    relations). To address this problem, we propose an approach based on models that
    provide multiple candidate predictions for the target, combined with a loss function
    that consideres only the best candidate. The resulting good forward and backward
    predictability supports the view that unidirectionally causally linked deterministic
    dynamical systems X → Y can be expected to detect the same link both before and
    after time reversal.
acknowledgement: The work was supported by the Scientific Grant Agency of the Ministry
  of Education of the Slovak Republic and the Slovak Academy of Sciences, projects
  APVV-21-0216, VEGA2-0096-21 and VEGA 2-0023-22.
article_processing_charge: Yes
article_type: original
author:
- first_name: Jozef
  full_name: Jakubík, Jozef
  last_name: Jakubík
- first_name: Phuong
  full_name: Bui Thi Mai, Phuong
  id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87
  last_name: Bui Thi Mai
- first_name: Martina
  full_name: Chvosteková, Martina
  last_name: Chvosteková
- first_name: Anna
  full_name: Krakovská, Anna
  last_name: Krakovská
citation:
  ama: Jakubík J, Phuong M, Chvosteková M, Krakovská A. Against the flow of time with
    multi-output models. <i>Measurement Science Review</i>. 2023;23(4):175-183. doi:<a
    href="https://doi.org/10.2478/msr-2023-0023">10.2478/msr-2023-0023</a>
  apa: Jakubík, J., Phuong, M., Chvosteková, M., &#38; Krakovská, A. (2023). Against
    the flow of time with multi-output models. <i>Measurement Science Review</i>.
    Sciendo. <a href="https://doi.org/10.2478/msr-2023-0023">https://doi.org/10.2478/msr-2023-0023</a>
  chicago: Jakubík, Jozef, Mary Phuong, Martina Chvosteková, and Anna Krakovská. “Against
    the Flow of Time with Multi-Output Models.” <i>Measurement Science Review</i>.
    Sciendo, 2023. <a href="https://doi.org/10.2478/msr-2023-0023">https://doi.org/10.2478/msr-2023-0023</a>.
  ieee: J. Jakubík, M. Phuong, M. Chvosteková, and A. Krakovská, “Against the flow
    of time with multi-output models,” <i>Measurement Science Review</i>, vol. 23,
    no. 4. Sciendo, pp. 175–183, 2023.
  ista: Jakubík J, Phuong M, Chvosteková M, Krakovská A. 2023. Against the flow of
    time with multi-output models. Measurement Science Review. 23(4), 175–183.
  mla: Jakubík, Jozef, et al. “Against the Flow of Time with Multi-Output Models.”
    <i>Measurement Science Review</i>, vol. 23, no. 4, Sciendo, 2023, pp. 175–83,
    doi:<a href="https://doi.org/10.2478/msr-2023-0023">10.2478/msr-2023-0023</a>.
  short: J. Jakubík, M. Phuong, M. Chvosteková, A. Krakovská, Measurement Science
    Review 23 (2023) 175–183.
date_created: 2023-10-22T22:01:15Z
date_published: 2023-08-01T00:00:00Z
date_updated: 2025-09-09T13:10:30Z
day: '01'
ddc:
- '510'
department:
- _id: ChLa
doi: 10.2478/msr-2023-0023
external_id:
  isi:
  - '001070829600005'
file:
- access_level: open_access
  checksum: b069cc10fa6a7c96b2bc9f728165f9e6
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-31T12:07:23Z
  date_updated: 2023-10-31T12:07:23Z
  file_id: '14476'
  file_name: 2023_MeasurementScienceRev_Jakubik.pdf
  file_size: 2639783
  relation: main_file
  success: 1
file_date_updated: 2023-10-31T12:07:23Z
has_accepted_license: '1'
intvolume: '        23'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '08'
oa: 1
oa_version: Published Version
page: 175-183
publication: Measurement Science Review
publication_identifier:
  eissn:
  - 1335-8871
publication_status: published
publisher: Sciendo
quality_controlled: '1'
scopus_import: '1'
status: public
title: Against the flow of time with multi-output models
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 23
year: '2023'
...
---
_id: '14448'
abstract:
- lang: eng
  text: We consider the problem of solving LP relaxations of MAP-MRF inference problems,
    and in particular the method proposed recently in [16], [35]. As a key computational
    subroutine, it uses a variant of the Frank-Wolfe (FW) method to minimize a smooth
    convex function over a combinatorial polytope. We propose an efficient implementation
    of this subroutine based on in-face Frank-Wolfe directions, introduced in [4]
    in a different context. More generally, we define an abstract data structure for
    a combinatorial subproblem that enables in-face FW directions, and describe its
    specialization for tree-structured MAP-MRF inference subproblems. Experimental
    results indicate that the resulting method is the current state-of-art LP solver
    for some classes of problems. Our code is available at pub.ist.ac.at/~vnk/papers/IN-FACE-FW.html.
article_processing_charge: No
arxiv: 1
author:
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: 'Kolmogorov V. Solving relaxations of MAP-MRF problems: Combinatorial in-face
    Frank-Wolfe directions. In: <i>Proceedings of the IEEE Computer Society Conference
    on Computer Vision and Pattern Recognition</i>. Vol 2023. IEEE; 2023:11980-11989.
    doi:<a href="https://doi.org/10.1109/CVPR52729.2023.01153">10.1109/CVPR52729.2023.01153</a>'
  apa: 'Kolmogorov, V. (2023). Solving relaxations of MAP-MRF problems: Combinatorial
    in-face Frank-Wolfe directions. In <i>Proceedings of the IEEE Computer Society
    Conference on Computer Vision and Pattern Recognition</i> (Vol. 2023, pp. 11980–11989).
    Vancouver, Canada: IEEE. <a href="https://doi.org/10.1109/CVPR52729.2023.01153">https://doi.org/10.1109/CVPR52729.2023.01153</a>'
  chicago: 'Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial
    in-Face Frank-Wolfe Directions.” In <i>Proceedings of the IEEE Computer Society
    Conference on Computer Vision and Pattern Recognition</i>, 2023:11980–89. IEEE,
    2023. <a href="https://doi.org/10.1109/CVPR52729.2023.01153">https://doi.org/10.1109/CVPR52729.2023.01153</a>.'
  ieee: 'V. Kolmogorov, “Solving relaxations of MAP-MRF problems: Combinatorial in-face
    Frank-Wolfe directions,” in <i>Proceedings of the IEEE Computer Society Conference
    on Computer Vision and Pattern Recognition</i>, Vancouver, Canada, 2023, vol.
    2023, pp. 11980–11989.'
  ista: 'Kolmogorov V. 2023. Solving relaxations of MAP-MRF problems: Combinatorial
    in-face Frank-Wolfe directions. Proceedings of the IEEE Computer Society Conference
    on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision
    and Pattern Recognition vol. 2023, 11980–11989.'
  mla: 'Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial
    in-Face Frank-Wolfe Directions.” <i>Proceedings of the IEEE Computer Society Conference
    on Computer Vision and Pattern Recognition</i>, vol. 2023, IEEE, 2023, pp. 11980–89,
    doi:<a href="https://doi.org/10.1109/CVPR52729.2023.01153">10.1109/CVPR52729.2023.01153</a>.'
  short: V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on
    Computer Vision and Pattern Recognition, IEEE, 2023, pp. 11980–11989.
conference:
  end_date: 2023-06-24
  location: Vancouver, Canada
  name: 'CVPR: Conference on Computer Vision and Pattern Recognition'
  start_date: 2023-06-17
corr_author: '1'
date_created: 2023-10-22T22:01:16Z
date_published: 2023-08-22T00:00:00Z
date_updated: 2025-09-09T13:09:58Z
day: '22'
department:
- _id: VlKo
doi: 10.1109/CVPR52729.2023.01153
external_id:
  arxiv:
  - '2010.09567'
  isi:
  - '001062522104029'
intvolume: '      2023'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2010.09567'
month: '08'
oa: 1
oa_version: Preprint
page: 11980-11989
publication: Proceedings of the IEEE Computer Society Conference on Computer Vision
  and Pattern Recognition
publication_identifier:
  isbn:
  - '9798350301298'
  issn:
  - 1063-6919
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe
  directions'
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2023
year: '2023'
...
---
_id: '14449'
abstract:
- lang: eng
  text: The rapid development of machine learning (ML) techniques has opened up the
    data-dense field of microbiome research for novel therapeutic, diagnostic, and
    prognostic applications targeting a wide range of disorders, which could substantially
    improve healthcare practices in the era of precision medicine. However, several
    challenges must be addressed to exploit the benefits of ML in this field fully.
    In particular, there is a need to establish “gold standard” protocols for conducting
    ML analysis experiments and improve interactions between microbiome researchers
    and ML experts. The Machine Learning Techniques in Human Microbiome Studies (ML4Microbiome)
    COST Action CA18131 is a European network established in 2019 to promote collaboration
    between discovery-oriented microbiome researchers and data-driven ML experts to
    optimize and standardize ML approaches for microbiome analysis. This perspective
    paper presents the key achievements of ML4Microbiome, which include identifying
    predictive and discriminatory ‘omics’ features, improving repeatability and comparability,
    developing automation procedures, and defining priority areas for the novel development
    of ML methods targeting the microbiome. The insights gained from ML4Microbiome
    will help to maximize the potential of ML in microbiome research and pave the
    way for new and improved healthcare practices.
acknowledgement: "This study is based upon work from COST Action ML4Microbiome “Statistical
  and machine learning techniques in human microbiome studies” (CA18131), supported
  by COST (European Cooperation in Science and Technology), www.cost.eu. MB acknowledges
  support through the Metagenopolis grant ANR-11-DPBS-0001. IM-I acknowledges support
  by the “Miguel Servet Type II” program (CPII21/00013) of the ISCIII-Madrid (Spain),
  co-financed by the FEDER.\r\nThe authors are grateful to all COST Action CA18131
  “Statistical and machine learning techniques in human microbiome studies” members
  for their contribution to the COST Action objectives, and to COST (European Cooperation
  in Science and Technology) for the economic support, www.cost.eu. WG2 and WG3 thank
  Emmanuelle Le Chatelier and Pauline Barbet (Université Paris-Saclay, INRAE, MetaGenoPolis,
  78350, Jouy-en-Josas, France) for preparing the shotgun CRC benchmark dataset."
article_number: '1257002'
article_processing_charge: Yes
article_type: original
author:
- first_name: Domenica
  full_name: D’Elia, Domenica
  last_name: D’Elia
- first_name: Jaak
  full_name: Truu, Jaak
  last_name: Truu
- first_name: Leo
  full_name: Lahti, Leo
  last_name: Lahti
- first_name: Magali
  full_name: Berland, Magali
  last_name: Berland
- first_name: Georgios
  full_name: Papoutsoglou, Georgios
  last_name: Papoutsoglou
- first_name: Michelangelo
  full_name: Ceci, Michelangelo
  last_name: Ceci
- first_name: Aldert
  full_name: Zomer, Aldert
  last_name: Zomer
- first_name: Marta B.
  full_name: Lopes, Marta B.
  last_name: Lopes
- first_name: Eliana
  full_name: Ibrahimi, Eliana
  last_name: Ibrahimi
- first_name: Aleksandra
  full_name: Gruca, Aleksandra
  last_name: Gruca
- first_name: Alina
  full_name: Nechyporenko, Alina
  last_name: Nechyporenko
- first_name: Marcus
  full_name: Frohme, Marcus
  last_name: Frohme
- first_name: Thomas
  full_name: Klammsteiner, Thomas
  last_name: Klammsteiner
- first_name: Enrique Carrillo De Santa
  full_name: Pau, Enrique Carrillo De Santa
  last_name: Pau
- first_name: Laura Judith
  full_name: Marcos-Zambrano, Laura Judith
  last_name: Marcos-Zambrano
- first_name: Karel
  full_name: Hron, Karel
  last_name: Hron
- first_name: Gianvito
  full_name: Pio, Gianvito
  last_name: Pio
- first_name: Andrea
  full_name: Simeon, Andrea
  last_name: Simeon
- first_name: Ramona
  full_name: Suharoschi, Ramona
  last_name: Suharoschi
- first_name: Isabel
  full_name: Moreno-Indias, Isabel
  last_name: Moreno-Indias
- first_name: Andriy
  full_name: Temko, Andriy
  last_name: Temko
- first_name: Miroslava
  full_name: Nedyalkova, Miroslava
  last_name: Nedyalkova
- first_name: Elena Simona
  full_name: Apostol, Elena Simona
  last_name: Apostol
- first_name: Ciprian Octavian
  full_name: Truică, Ciprian Octavian
  last_name: Truică
- first_name: Rajesh
  full_name: Shigdel, Rajesh
  last_name: Shigdel
- first_name: Jasminka Hasić
  full_name: Telalović, Jasminka Hasić
  last_name: Telalović
- first_name: Erik
  full_name: Bongcam-Rudloff, Erik
  last_name: Bongcam-Rudloff
- first_name: Piotr
  full_name: Przymus, Piotr
  last_name: Przymus
- first_name: Naida Babić
  full_name: Jordamović, Naida Babić
  last_name: Jordamović
- first_name: Laurent
  full_name: Falquet, Laurent
  last_name: Falquet
- first_name: Sonia
  full_name: Tarazona, Sonia
  last_name: Tarazona
- first_name: Alexia
  full_name: Sampri, Alexia
  last_name: Sampri
- first_name: Gaetano
  full_name: Isola, Gaetano
  last_name: Isola
- first_name: David
  full_name: Pérez-Serrano, David
  last_name: Pérez-Serrano
- first_name: Vladimir
  full_name: Trajkovik, Vladimir
  last_name: Trajkovik
- first_name: Lubos
  full_name: Klucar, Lubos
  last_name: Klucar
- first_name: Tatjana
  full_name: Loncar-Turukalo, Tatjana
  last_name: Loncar-Turukalo
- first_name: Aki S.
  full_name: Havulinna, Aki S.
  last_name: Havulinna
- first_name: Christian
  full_name: Jansen, Christian
  id: 837b2259-bcc9-11ed-a196-ae55927bc6e2
  last_name: Jansen
- first_name: Randi J.
  full_name: Bertelsen, Randi J.
  last_name: Bertelsen
- first_name: Marcus Joakim
  full_name: Claesson, Marcus Joakim
  last_name: Claesson
citation:
  ama: 'D’Elia D, Truu J, Lahti L, et al. Advancing microbiome research with machine
    learning: Key findings from the ML4Microbiome COST action. <i>Frontiers in Microbiology</i>.
    2023;14. doi:<a href="https://doi.org/10.3389/fmicb.2023.1257002">10.3389/fmicb.2023.1257002</a>'
  apa: 'D’Elia, D., Truu, J., Lahti, L., Berland, M., Papoutsoglou, G., Ceci, M.,
    … Claesson, M. J. (2023). Advancing microbiome research with machine learning:
    Key findings from the ML4Microbiome COST action. <i>Frontiers in Microbiology</i>.
    Frontiers. <a href="https://doi.org/10.3389/fmicb.2023.1257002">https://doi.org/10.3389/fmicb.2023.1257002</a>'
  chicago: 'D’Elia, Domenica, Jaak Truu, Leo Lahti, Magali Berland, Georgios Papoutsoglou,
    Michelangelo Ceci, Aldert Zomer, et al. “Advancing Microbiome Research with Machine
    Learning: Key Findings from the ML4Microbiome COST Action.” <i>Frontiers in Microbiology</i>.
    Frontiers, 2023. <a href="https://doi.org/10.3389/fmicb.2023.1257002">https://doi.org/10.3389/fmicb.2023.1257002</a>.'
  ieee: 'D. D’Elia <i>et al.</i>, “Advancing microbiome research with machine learning:
    Key findings from the ML4Microbiome COST action,” <i>Frontiers in Microbiology</i>,
    vol. 14. Frontiers, 2023.'
  ista: 'D’Elia D, Truu J, Lahti L, Berland M, Papoutsoglou G, Ceci M, Zomer A, Lopes
    MB, Ibrahimi E, Gruca A, Nechyporenko A, Frohme M, Klammsteiner T, Pau ECDS, Marcos-Zambrano
    LJ, Hron K, Pio G, Simeon A, Suharoschi R, Moreno-Indias I, Temko A, Nedyalkova
    M, Apostol ES, Truică CO, Shigdel R, Telalović JH, Bongcam-Rudloff E, Przymus
    P, Jordamović NB, Falquet L, Tarazona S, Sampri A, Isola G, Pérez-Serrano D, Trajkovik
    V, Klucar L, Loncar-Turukalo T, Havulinna AS, Jansen C, Bertelsen RJ, Claesson
    MJ. 2023. Advancing microbiome research with machine learning: Key findings from
    the ML4Microbiome COST action. Frontiers in Microbiology. 14, 1257002.'
  mla: 'D’Elia, Domenica, et al. “Advancing Microbiome Research with Machine Learning:
    Key Findings from the ML4Microbiome COST Action.” <i>Frontiers in Microbiology</i>,
    vol. 14, 1257002, Frontiers, 2023, doi:<a href="https://doi.org/10.3389/fmicb.2023.1257002">10.3389/fmicb.2023.1257002</a>.'
  short: D. D’Elia, J. Truu, L. Lahti, M. Berland, G. Papoutsoglou, M. Ceci, A. Zomer,
    M.B. Lopes, E. Ibrahimi, A. Gruca, A. Nechyporenko, M. Frohme, T. Klammsteiner,
    E.C.D.S. Pau, L.J. Marcos-Zambrano, K. Hron, G. Pio, A. Simeon, R. Suharoschi,
    I. Moreno-Indias, A. Temko, M. Nedyalkova, E.S. Apostol, C.O. Truică, R. Shigdel,
    J.H. Telalović, E. Bongcam-Rudloff, P. Przymus, N.B. Jordamović, L. Falquet, S.
    Tarazona, A. Sampri, G. Isola, D. Pérez-Serrano, V. Trajkovik, L. Klucar, T. Loncar-Turukalo,
    A.S. Havulinna, C. Jansen, R.J. Bertelsen, M.J. Claesson, Frontiers in Microbiology
    14 (2023).
date_created: 2023-10-22T22:01:16Z
date_published: 2023-09-25T00:00:00Z
date_updated: 2023-12-13T13:07:21Z
day: '25'
ddc:
- '000'
department:
- _id: ScienComp
doi: 10.3389/fmicb.2023.1257002
external_id:
  isi:
  - '001080536000001'
  pmid:
  - '37808321'
file:
- access_level: open_access
  checksum: 6c0acdd8fa111a699826957b8dff19d5
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-30T13:38:48Z
  date_updated: 2023-10-30T13:38:48Z
  file_id: '14471'
  file_name: 2023_FrontiersMicrobiology_DElia.pdf
  file_size: 505078
  relation: main_file
  success: 1
file_date_updated: 2023-10-30T13:38:48Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Microbiology
publication_identifier:
  eissn:
  - 1664-302X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Advancing microbiome research with machine learning: Key findings from the
  ML4Microbiome COST action'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2023'
...
---
_id: '14452'
abstract:
- lang: eng
  text: The classical infinitesimal model is a simple and robust model for the inheritance
    of quantitative traits. In this model, a quantitative trait is expressed as the
    sum of a genetic and an environmental component, and the genetic component of
    offspring traits within a family follows a normal distribution around the average
    of the parents’ trait values, and has a variance that is independent of the parental
    traits. In previous work, we showed that when trait values are determined by the
    sum of a large number of additive Mendelian factors, each of small effect, one
    can justify the infinitesimal model as a limit of Mendelian inheritance. In this
    paper, we show that this result extends to include dominance. We define the model
    in terms of classical quantities of quantitative genetics, before justifying it
    as a limit of Mendelian inheritance as the number, M, of underlying loci tends
    to infinity. As in the additive case, the multivariate normal distribution of
    trait values across the pedigree can be expressed in terms of variance components
    in an ancestral population and probabilities of identity by descent determined
    by the pedigree. Now, with just first-order dominance effects, we require two-,
    three-, and four-way identities. We also show that, even if we condition on parental
    trait values, the “shared” and “residual” components of trait values within each
    family will be asymptotically normally distributed as the number of loci tends
    to infinity, with an error of order 1/M−−√⁠. We illustrate our results with some
    numerical examples.
acknowledgement: NHB was supported in part by ERC Grants 250152 and 101055327. AV
  was partly supported by the chaire Modélisation Mathématique et Biodiversité of
  Veolia Environment—Ecole Polytechnique—Museum National d’Histoire Naturelle—Fondation
  X.
article_number: iyad133
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Alison M.
  full_name: Etheridge, Alison M.
  last_name: Etheridge
- first_name: Amandine
  full_name: Véber, Amandine
  last_name: Véber
citation:
  ama: Barton NH, Etheridge AM, Véber A. The infinitesimal model with dominance. <i>Genetics</i>.
    2023;225(2). doi:<a href="https://doi.org/10.1093/genetics/iyad133">10.1093/genetics/iyad133</a>
  apa: Barton, N. H., Etheridge, A. M., &#38; Véber, A. (2023). The infinitesimal
    model with dominance. <i>Genetics</i>. Oxford University Press. <a href="https://doi.org/10.1093/genetics/iyad133">https://doi.org/10.1093/genetics/iyad133</a>
  chicago: Barton, Nicholas H, Alison M. Etheridge, and Amandine Véber. “The Infinitesimal
    Model with Dominance.” <i>Genetics</i>. Oxford University Press, 2023. <a href="https://doi.org/10.1093/genetics/iyad133">https://doi.org/10.1093/genetics/iyad133</a>.
  ieee: N. H. Barton, A. M. Etheridge, and A. Véber, “The infinitesimal model with
    dominance,” <i>Genetics</i>, vol. 225, no. 2. Oxford University Press, 2023.
  ista: Barton NH, Etheridge AM, Véber A. 2023. The infinitesimal model with dominance.
    Genetics. 225(2), iyad133.
  mla: Barton, Nicholas H., et al. “The Infinitesimal Model with Dominance.” <i>Genetics</i>,
    vol. 225, no. 2, iyad133, Oxford University Press, 2023, doi:<a href="https://doi.org/10.1093/genetics/iyad133">10.1093/genetics/iyad133</a>.
  short: N.H. Barton, A.M. Etheridge, A. Véber, Genetics 225 (2023).
date_created: 2023-10-29T23:01:15Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2025-09-09T13:07:07Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/genetics/iyad133
ec_funded: 1
external_id:
  arxiv:
  - '2211.03515'
  isi:
  - '001148042000008'
file:
- access_level: open_access
  checksum: 3f65b1fbe813e2f4dbb5d2b5e891844a
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-30T12:57:53Z
  date_updated: 2023-10-30T12:57:53Z
  file_id: '14469'
  file_name: 2023_Genetics_Barton.pdf
  file_size: 1439032
  relation: main_file
  success: 1
file_date_updated: 2023-10-30T12:57:53Z
has_accepted_license: '1'
intvolume: '       225'
isi: 1
issue: '2'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '250152'
  name: Limits to selection in biology and in evolutionary computation
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
  grant_number: '101055327'
  name: Understanding the evolution of continuous genomes
publication: Genetics
publication_identifier:
  eissn:
  - 1943-2631
  issn:
  - 0016-6731
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  record:
  - id: '12949'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: The infinitesimal model with dominance
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 225
year: '2023'
...
---
_id: '14453'
abstract:
- lang: eng
  text: Squall lines are substantially influenced by the interaction of low-level
    shear with cold pools associated with convective downdrafts. Beyond an optimal
    shear amplitude, squall lines tend to orient themselves at an angle with respect
    to the low-level shear. While the mechanisms behind squall line orientation seem
    to be increasingly well understood, uncertainties remain on the implications of
    this orientation. Roca and Fiolleau (2020, https://doi.org/10.1038/s43247-020-00015-4)
    show that long lived mesoscale convective systems, including squall lines, are
    disproportionately involved in rainfall extremes in the tropics. This article
    investigates the influence of the interaction between low-level shear and squall
    line outflow on squall line generated precipitation extrema in the tropics. Using
    a cloud resolving model, simulated squall lines in radiative convective equilibrium
    amid a shear-dominated regime (super optimal), a balanced regime (optimal), and
    an outflow dominated regime (suboptimal). Our results show that precipitation
    extremes in squall lines are 40% more intense in the case of optimal shear and
    remain 30% superior in the superoptimal regime relative to a disorganized case.
    With a theoretical scaling of precipitation extremes (C. Muller & Takayabu, 2020,
    https://doi.org/10.1088/1748-9326/ab7130), we show that the condensation rates
    control the amplification of precipitation extremes in tropical squall lines,
    mainly due to its change in vertical mass flux (dynamic component). The reduction
    of dilution by entrainment explains half of this change, consistent with Mulholland
    et al. (2021, https://doi.org/10.1175/jas-d-20-0299.1). The other half is explained
    by increased cloud-base velocity intensity in optimal and superoptimal squall
    lines.
acknowledgement: The authors gratefully acknowledge funding from the European Research
  Council under the European Union's Horizon 2020 research and innovation program
  (Project CLUSTER, Grant Agreement No. 805041). This work is also supported by a
  PhD fellowship funded by the Ecole Normale Supérieure de Paris-Saclay. Authors are
  also grateful to Benjamin Filider, who was of great help and support in the development
  of ideas. Eventually, we would like to thank Martin Singh, John M. Peters and an
  anonymous reviewer for their valuable comments and suggestions, which greatly improved
  the quality of the manuscript.
article_number: e2022MS003477
article_processing_charge: Yes
article_type: original
author:
- first_name: Sophie
  full_name: Abramian, Sophie
  last_name: Abramian
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: Camille
  full_name: Risi, Camille
  last_name: Risi
citation:
  ama: Abramian S, Muller CJ, Risi C. Extreme precipitation in tropical squall lines.
    <i>Journal of Advances in Modeling Earth Systems</i>. 2023;15(10). doi:<a href="https://doi.org/10.1029/2022MS003477">10.1029/2022MS003477</a>
  apa: Abramian, S., Muller, C. J., &#38; Risi, C. (2023). Extreme precipitation in
    tropical squall lines. <i>Journal of Advances in Modeling Earth Systems</i>. Wiley.
    <a href="https://doi.org/10.1029/2022MS003477">https://doi.org/10.1029/2022MS003477</a>
  chicago: Abramian, Sophie, Caroline J Muller, and Camille Risi. “Extreme Precipitation
    in Tropical Squall Lines.” <i>Journal of Advances in Modeling Earth Systems</i>.
    Wiley, 2023. <a href="https://doi.org/10.1029/2022MS003477">https://doi.org/10.1029/2022MS003477</a>.
  ieee: S. Abramian, C. J. Muller, and C. Risi, “Extreme precipitation in tropical
    squall lines,” <i>Journal of Advances in Modeling Earth Systems</i>, vol. 15,
    no. 10. Wiley, 2023.
  ista: Abramian S, Muller CJ, Risi C. 2023. Extreme precipitation in tropical squall
    lines. Journal of Advances in Modeling Earth Systems. 15(10), e2022MS003477.
  mla: Abramian, Sophie, et al. “Extreme Precipitation in Tropical Squall Lines.”
    <i>Journal of Advances in Modeling Earth Systems</i>, vol. 15, no. 10, e2022MS003477,
    Wiley, 2023, doi:<a href="https://doi.org/10.1029/2022MS003477">10.1029/2022MS003477</a>.
  short: S. Abramian, C.J. Muller, C. Risi, Journal of Advances in Modeling Earth
    Systems 15 (2023).
date_created: 2023-10-29T23:01:15Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2024-11-05T09:00:44Z
day: '01'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1029/2022MS003477
ec_funded: 1
external_id:
  isi:
  - '001084933600001'
file:
- access_level: open_access
  checksum: 43e6a1a35b663843c7d3f8d0caaca1a5
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-30T13:31:42Z
  date_updated: 2023-10-30T13:31:42Z
  file_id: '14470'
  file_name: 2023_JAMES_Abramian.pdf
  file_size: 1975210
  relation: main_file
  success: 1
file_date_updated: 2023-10-30T13:31:42Z
has_accepted_license: '1'
intvolume: '        15'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 629205d8-2b32-11ec-9570-e1356ff73576
  call_identifier: H2020
  grant_number: '805041'
  name: Organization of CLoUdS, and implications of Tropical  cyclones and for the
    Energetics of the tropics, in current and waRming climate
publication: Journal of Advances in Modeling Earth Systems
publication_identifier:
  eissn:
  - 1942-2466
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extreme precipitation in tropical squall lines
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2023'
...
---
_id: '14454'
abstract:
- lang: eng
  text: As AI and machine-learned software are used increasingly for making decisions
    that affect humans, it is imperative that they remain fair and unbiased in their
    decisions. To complement design-time bias mitigation measures, runtime verification
    techniques have been introduced recently to monitor the algorithmic fairness of
    deployed systems. Previous monitoring techniques assume full observability of
    the states of the (unknown) monitored system. Moreover, they can monitor only
    fairness properties that are specified as arithmetic expressions over the probabilities
    of different events. In this work, we extend fairness monitoring to systems modeled
    as partially observed Markov chains (POMC), and to specifications containing arithmetic
    expressions over the expected values of numerical functions on event sequences.
    The only assumptions we make are that the underlying POMC is aperiodic and starts
    in the stationary distribution, with a bound on its mixing time being known. These
    assumptions enable us to estimate a given property for the entire distribution
    of possible executions of the monitored POMC, by observing only a single execution.
    Our monitors observe a long run of the system and, after each new observation,
    output updated PAC-estimates of how fair or biased the system is. The monitors
    are computationally lightweight and, using a prototype implementation, we demonstrate
    their effectiveness on several real-world examples.
acknowledgement: 'This work is supported by the European Research Council under Grant
  No.: ERC-2020-AdG 101020093.'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Konstantin
  full_name: Kueffner, Konstantin
  id: 8121a2d0-dc85-11ea-9058-af578f3b4515
  last_name: Kueffner
  orcid: 0000-0001-8974-2542
- first_name: Kaushik
  full_name: Mallik, Kaushik
  id: 0834ff3c-6d72-11ec-94e0-b5b0a4fb8598
  last_name: Mallik
  orcid: 0000-0001-9864-7475
citation:
  ama: 'Henzinger TA, Kueffner K, Mallik K. Monitoring algorithmic fairness under
    partial observations. In: <i>23rd International Conference on Runtime Verification</i>.
    Vol 14245. Springer Nature; 2023:291-311. doi:<a href="https://doi.org/10.1007/978-3-031-44267-4_15">10.1007/978-3-031-44267-4_15</a>'
  apa: 'Henzinger, T. A., Kueffner, K., &#38; Mallik, K. (2023). Monitoring algorithmic
    fairness under partial observations. In <i>23rd International Conference on Runtime
    Verification</i> (Vol. 14245, pp. 291–311). Thessaloniki, Greece: Springer Nature.
    <a href="https://doi.org/10.1007/978-3-031-44267-4_15">https://doi.org/10.1007/978-3-031-44267-4_15</a>'
  chicago: Henzinger, Thomas A, Konstantin Kueffner, and Kaushik Mallik. “Monitoring
    Algorithmic Fairness under Partial Observations.” In <i>23rd International Conference
    on Runtime Verification</i>, 14245:291–311. Springer Nature, 2023. <a href="https://doi.org/10.1007/978-3-031-44267-4_15">https://doi.org/10.1007/978-3-031-44267-4_15</a>.
  ieee: T. A. Henzinger, K. Kueffner, and K. Mallik, “Monitoring algorithmic fairness
    under partial observations,” in <i>23rd International Conference on Runtime Verification</i>,
    Thessaloniki, Greece, 2023, vol. 14245, pp. 291–311.
  ista: 'Henzinger TA, Kueffner K, Mallik K. 2023. Monitoring algorithmic fairness
    under partial observations. 23rd International Conference on Runtime Verification.
    RV: Conference on Runtime Verification, LNCS, vol. 14245, 291–311.'
  mla: Henzinger, Thomas A., et al. “Monitoring Algorithmic Fairness under Partial
    Observations.” <i>23rd International Conference on Runtime Verification</i>, vol.
    14245, Springer Nature, 2023, pp. 291–311, doi:<a href="https://doi.org/10.1007/978-3-031-44267-4_15">10.1007/978-3-031-44267-4_15</a>.
  short: T.A. Henzinger, K. Kueffner, K. Mallik, in:, 23rd International Conference
    on Runtime Verification, Springer Nature, 2023, pp. 291–311.
conference:
  end_date: 2023-10-06
  location: Thessaloniki, Greece
  name: 'RV: Conference on Runtime Verification'
  start_date: 2023-10-03
corr_author: '1'
date_created: 2023-10-29T23:01:15Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2025-04-14T07:55:55Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-031-44267-4_15
ec_funded: 1
external_id:
  arxiv:
  - '2308.00341'
intvolume: '     14245'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2308.00341
month: '10'
oa: 1
oa_version: Preprint
page: 291-311
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 23rd International Conference on Runtime Verification
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031442667'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Monitoring algorithmic fairness under partial observations
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14245
year: '2023'
...
---
_id: '14455'
acknowledgement: The author(s) declare that financial support was received for the
  research, authorship, and/or publication of this article. This work has been partially
  supported by Italian Ministry of Health Grant RC2023 (and the 5 × 1,000 voluntary
  contributions). The authors thank the children and their families with whom they
  work daily.
article_number: '1287879'
article_processing_charge: Yes
article_type: letter_note
author:
- first_name: Antonio
  full_name: Narzisi, Antonio
  last_name: Narzisi
- first_name: Alycia
  full_name: Halladay, Alycia
  last_name: Halladay
- first_name: Gabriele
  full_name: Masi, Gabriele
  last_name: Masi
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Catherine
  full_name: Lord, Catherine
  last_name: Lord
citation:
  ama: 'Narzisi A, Halladay A, Masi G, Novarino G, Lord C. Tempering expectations:
    Considerations on the current state of stem cells therapy for autism treatment.
    <i>Frontiers in Psychiatry</i>. 2023;14. doi:<a href="https://doi.org/10.3389/fpsyt.2023.1287879">10.3389/fpsyt.2023.1287879</a>'
  apa: 'Narzisi, A., Halladay, A., Masi, G., Novarino, G., &#38; Lord, C. (2023).
    Tempering expectations: Considerations on the current state of stem cells therapy
    for autism treatment. <i>Frontiers in Psychiatry</i>. Frontiers. <a href="https://doi.org/10.3389/fpsyt.2023.1287879">https://doi.org/10.3389/fpsyt.2023.1287879</a>'
  chicago: 'Narzisi, Antonio, Alycia Halladay, Gabriele Masi, Gaia Novarino, and Catherine
    Lord. “Tempering Expectations: Considerations on the Current State of Stem Cells
    Therapy for Autism Treatment.” <i>Frontiers in Psychiatry</i>. Frontiers, 2023.
    <a href="https://doi.org/10.3389/fpsyt.2023.1287879">https://doi.org/10.3389/fpsyt.2023.1287879</a>.'
  ieee: 'A. Narzisi, A. Halladay, G. Masi, G. Novarino, and C. Lord, “Tempering expectations:
    Considerations on the current state of stem cells therapy for autism treatment,”
    <i>Frontiers in Psychiatry</i>, vol. 14. Frontiers, 2023.'
  ista: 'Narzisi A, Halladay A, Masi G, Novarino G, Lord C. 2023. Tempering expectations:
    Considerations on the current state of stem cells therapy for autism treatment.
    Frontiers in Psychiatry. 14, 1287879.'
  mla: 'Narzisi, Antonio, et al. “Tempering Expectations: Considerations on the Current
    State of Stem Cells Therapy for Autism Treatment.” <i>Frontiers in Psychiatry</i>,
    vol. 14, 1287879, Frontiers, 2023, doi:<a href="https://doi.org/10.3389/fpsyt.2023.1287879">10.3389/fpsyt.2023.1287879</a>.'
  short: A. Narzisi, A. Halladay, G. Masi, G. Novarino, C. Lord, Frontiers in Psychiatry
    14 (2023).
date_created: 2023-10-29T23:01:16Z
date_published: 2023-10-03T00:00:00Z
date_updated: 2023-12-13T13:06:07Z
day: '03'
ddc:
- '570'
department:
- _id: GaNo
doi: 10.3389/fpsyt.2023.1287879
external_id:
  isi:
  - '001084841700001'
  pmid:
  - '37854442'
file:
- access_level: open_access
  checksum: 0a76373e9a4c0fc199f80380de257e86
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-30T12:48:40Z
  date_updated: 2023-10-30T12:48:40Z
  file_id: '14468'
  file_name: 2023_FrontiersPsychiatry_Narzisi.pdf
  file_size: 147878
  relation: main_file
  success: 1
file_date_updated: 2023-10-30T12:48:40Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Psychiatry
publication_identifier:
  eissn:
  - 1664-0640
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Tempering expectations: Considerations on the current state of stem cells
  therapy for autism treatment'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2023'
...
---
_id: '14456'
abstract:
- lang: eng
  text: In this paper, we present novel algorithms that efficiently compute a shortest
    reconfiguration sequence between two given dominating sets in trees and interval
    graphs under the TOKEN SLIDING model. In this problem, a graph is provided along
    with its two dominating sets, which can be imagined as tokens placed on vertices.
    The objective is to find a shortest sequence of dominating sets that transforms
    one set into the other, with each set in the sequence resulting from sliding a
    single token in the previous set. While identifying any sequence has been well
    studied, our work presents the first polynomial algorithms for this optimization
    variant in the context of dominating sets.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Jan Matyáš
  full_name: Křišťan, Jan Matyáš
  last_name: Křišťan
- first_name: Jakub
  full_name: Svoboda, Jakub
  id: 130759D2-D7DD-11E9-87D2-DE0DE6697425
  last_name: Svoboda
  orcid: 0000-0002-1419-3267
citation:
  ama: 'Křišťan JM, Svoboda J. Shortest dominating set reconfiguration under token
    sliding. In: <i>24th International Symposium on Fundamentals of Computation Theory</i>.
    Vol 14292. Springer Nature; 2023:333-347. doi:<a href="https://doi.org/10.1007/978-3-031-43587-4_24">10.1007/978-3-031-43587-4_24</a>'
  apa: 'Křišťan, J. M., &#38; Svoboda, J. (2023). Shortest dominating set reconfiguration
    under token sliding. In <i>24th International Symposium on Fundamentals of Computation
    Theory</i> (Vol. 14292, pp. 333–347). Trier, Germany: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-43587-4_24">https://doi.org/10.1007/978-3-031-43587-4_24</a>'
  chicago: Křišťan, Jan Matyáš, and Jakub Svoboda. “Shortest Dominating Set Reconfiguration
    under Token Sliding.” In <i>24th International Symposium on Fundamentals of Computation
    Theory</i>, 14292:333–47. Springer Nature, 2023. <a href="https://doi.org/10.1007/978-3-031-43587-4_24">https://doi.org/10.1007/978-3-031-43587-4_24</a>.
  ieee: J. M. Křišťan and J. Svoboda, “Shortest dominating set reconfiguration under
    token sliding,” in <i>24th International Symposium on Fundamentals of Computation
    Theory</i>, Trier, Germany, 2023, vol. 14292, pp. 333–347.
  ista: 'Křišťan JM, Svoboda J. 2023. Shortest dominating set reconfiguration under
    token sliding. 24th International Symposium on Fundamentals of Computation Theory.
    FCT: Fundamentals of Computation Theory, LNCS, vol. 14292, 333–347.'
  mla: Křišťan, Jan Matyáš, and Jakub Svoboda. “Shortest Dominating Set Reconfiguration
    under Token Sliding.” <i>24th International Symposium on Fundamentals of Computation
    Theory</i>, vol. 14292, Springer Nature, 2023, pp. 333–47, doi:<a href="https://doi.org/10.1007/978-3-031-43587-4_24">10.1007/978-3-031-43587-4_24</a>.
  short: J.M. Křišťan, J. Svoboda, in:, 24th International Symposium on Fundamentals
    of Computation Theory, Springer Nature, 2023, pp. 333–347.
conference:
  end_date: 2023-09-21
  location: Trier, Germany
  name: 'FCT: Fundamentals of Computation Theory'
  start_date: 2023-09-18
date_created: 2023-10-29T23:01:16Z
date_published: 2023-09-21T00:00:00Z
date_updated: 2025-09-09T13:07:40Z
day: '21'
department:
- _id: KrCh
doi: 10.1007/978-3-031-43587-4_24
external_id:
  arxiv:
  - '2307.10847'
  isi:
  - '001162288800024'
intvolume: '     14292'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2307.10847
month: '09'
oa: 1
oa_version: Preprint
page: 333-347
publication: 24th International Symposium on Fundamentals of Computation Theory
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031435867'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1007/978-3-031-43587-4_31
scopus_import: '1'
status: public
title: Shortest dominating set reconfiguration under token sliding
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14292
year: '2023'
...
---
_id: '14457'
abstract:
- lang: eng
  text: "Threshold secret sharing allows a dealer to split a secret s into n shares,
    such that any t shares allow for reconstructing s, but no t-1 shares reveal any
    information about s. Leakage-resilient secret sharing requires that the secret
    remains hidden, even when an adversary additionally obtains a limited amount of
    leakage from every share. Benhamouda et al. (CRYPTO’18) proved that Shamir’s secret
    sharing scheme is one bit leakage-resilient for reconstruction threshold t≥0.85n
    and conjectured that the same holds for t = c.n for any constant 0≤c≤1.  Nielsen
    and Simkin (EUROCRYPT’20) showed that this is the best one can hope for by proving
    that Shamir’s scheme is not secure against one-bit leakage when t0c.n/log(n).\r\nIn
    this work, we strengthen the lower bound of Nielsen and Simkin. We consider noisy
    leakage-resilience, where a random subset of leakages is replaced by uniformly
    random noise. We prove a lower bound for Shamir’s secret sharing, similar to that
    of Nielsen and Simkin, which holds even when a constant fraction of leakages is
    replaced by random noise. To this end, we first prove a lower bound on the share
    size of any noisy-leakage-resilient sharing scheme. We then use this lower bound
    to show that there exist universal constants c1, c2,  such that for sufficiently
    large n it holds that Shamir’s secret sharing scheme is not noisy-leakage-resilient
    for t≤c1.n/log(n), even when a c2 fraction of leakages are replaced by random
    noise.\r\n\r\n\r\n\r\n"
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Charlotte
  full_name: Hoffmann, Charlotte
  id: 0f78d746-dc7d-11ea-9b2f-83f92091afe7
  last_name: Hoffmann
  orcid: 0000-0003-2027-5549
- first_name: Mark
  full_name: Simkin, Mark
  last_name: Simkin
citation:
  ama: 'Hoffmann C, Simkin M. Stronger lower bounds for leakage-resilient secret sharing.
    In: <i>8th International Conference on Cryptology and Information Security in
    Latin America</i>. Vol 14168. Springer Nature; 2023:215-228. doi:<a href="https://doi.org/10.1007/978-3-031-44469-2_11">10.1007/978-3-031-44469-2_11</a>'
  apa: 'Hoffmann, C., &#38; Simkin, M. (2023). Stronger lower bounds for leakage-resilient
    secret sharing. In <i>8th International Conference on Cryptology and Information
    Security in Latin America</i> (Vol. 14168, pp. 215–228). Quito, Ecuador: Springer
    Nature. <a href="https://doi.org/10.1007/978-3-031-44469-2_11">https://doi.org/10.1007/978-3-031-44469-2_11</a>'
  chicago: Hoffmann, Charlotte, and Mark Simkin. “Stronger Lower Bounds for Leakage-Resilient
    Secret Sharing.” In <i>8th International Conference on Cryptology and Information
    Security in Latin America</i>, 14168:215–28. Springer Nature, 2023. <a href="https://doi.org/10.1007/978-3-031-44469-2_11">https://doi.org/10.1007/978-3-031-44469-2_11</a>.
  ieee: C. Hoffmann and M. Simkin, “Stronger lower bounds for leakage-resilient secret
    sharing,” in <i>8th International Conference on Cryptology and Information Security
    in Latin America</i>, Quito, Ecuador, 2023, vol. 14168, pp. 215–228.
  ista: 'Hoffmann C, Simkin M. 2023. Stronger lower bounds for leakage-resilient secret
    sharing. 8th International Conference on Cryptology and Information Security in
    Latin America. LATINCRYPT: Cryptology and Information Security in Latin America,
    LNCS, vol. 14168, 215–228.'
  mla: Hoffmann, Charlotte, and Mark Simkin. “Stronger Lower Bounds for Leakage-Resilient
    Secret Sharing.” <i>8th International Conference on Cryptology and Information
    Security in Latin America</i>, vol. 14168, Springer Nature, 2023, pp. 215–28,
    doi:<a href="https://doi.org/10.1007/978-3-031-44469-2_11">10.1007/978-3-031-44469-2_11</a>.
  short: C. Hoffmann, M. Simkin, in:, 8th International Conference on Cryptology and
    Information Security in Latin America, Springer Nature, 2023, pp. 215–228.
conference:
  end_date: 2023-10-06
  location: Quito, Ecuador
  name: 'LATINCRYPT: Cryptology and Information Security in Latin America'
  start_date: 2023-10-03
corr_author: '1'
date_created: 2023-10-29T23:01:16Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2025-09-09T13:09:21Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-031-44469-2_11
external_id:
  isi:
  - '001157041900011'
intvolume: '     14168'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2023/1017
month: '10'
oa: 1
oa_version: Preprint
page: 215-228
publication: 8th International Conference on Cryptology and Information Security in
  Latin America
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031444685'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stronger lower bounds for leakage-resilient secret sharing
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14168
year: '2023'
...
---
_id: '14460'
abstract:
- lang: eng
  text: We provide an efficient implementation of the backpropagation algorithm, specialized
    to the case where the weights of the neural network being trained are sparse.
    Our algorithm is general, as it applies to arbitrary (unstructured) sparsity and
    common layer types (e.g., convolutional or linear). We provide a fast vectorized
    implementation on commodity CPUs, and show that it can yield speedups in end-to-end
    runtime experiments, both in transfer learning using already-sparsified networks,
    and in training sparse networks from scratch. Thus, our results provide the first
    support for sparse training on commodity hardware.
acknowledgement: 'We would like to thank Elias Frantar for his valuable assistance
  and support at the outset of this project, and the anonymous ICML and SNN reviewers
  for very constructive feedback. EI was supported in part by the FWF DK VGSCO, grant
  agreement number W1260-N35. DA acknowledges generous ERC support, via Starting Grant
  805223 ScaleML. '
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Mahdi
  full_name: Nikdan, Mahdi
  id: 66374281-f394-11eb-9cf6-869147deecc0
  last_name: Nikdan
- first_name: Tommaso
  full_name: Pegolotti, Tommaso
  last_name: Pegolotti
- first_name: Eugenia B
  full_name: Iofinova, Eugenia B
  id: f9a17499-f6e0-11ea-865d-fdf9a3f77117
  last_name: Iofinova
  orcid: 0000-0002-7778-3221
- first_name: Eldar
  full_name: Kurtic, Eldar
  id: 47beb3a5-07b5-11eb-9b87-b108ec578218
  last_name: Kurtic
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Nikdan M, Pegolotti T, Iofinova EB, Kurtic E, Alistarh D-A. SparseProp: Efficient
    sparse backpropagation for faster training of neural networks at the edge. In:
    <i>Proceedings of the 40th International Conference on Machine Learning</i>. Vol
    202. ML Research Press; 2023:26215-26227.'
  apa: 'Nikdan, M., Pegolotti, T., Iofinova, E. B., Kurtic, E., &#38; Alistarh, D.-A.
    (2023). SparseProp: Efficient sparse backpropagation for faster training of neural
    networks at the edge. In <i>Proceedings of the 40th International Conference on
    Machine Learning</i> (Vol. 202, pp. 26215–26227). Honolulu, Hawaii, HI, United
    States: ML Research Press.'
  chicago: 'Nikdan, Mahdi, Tommaso Pegolotti, Eugenia B Iofinova, Eldar Kurtic, and
    Dan-Adrian Alistarh. “SparseProp: Efficient Sparse Backpropagation for Faster
    Training of Neural Networks at the Edge.” In <i>Proceedings of the 40th International
    Conference on Machine Learning</i>, 202:26215–27. ML Research Press, 2023.'
  ieee: 'M. Nikdan, T. Pegolotti, E. B. Iofinova, E. Kurtic, and D.-A. Alistarh, “SparseProp:
    Efficient sparse backpropagation for faster training of neural networks at the
    edge,” in <i>Proceedings of the 40th International Conference on Machine Learning</i>,
    Honolulu, Hawaii, HI, United States, 2023, vol. 202, pp. 26215–26227.'
  ista: 'Nikdan M, Pegolotti T, Iofinova EB, Kurtic E, Alistarh D-A. 2023. SparseProp:
    Efficient sparse backpropagation for faster training of neural networks at the
    edge. Proceedings of the 40th International Conference on Machine Learning. ICML:
    International Conference on Machine Learning, PMLR, vol. 202, 26215–26227.'
  mla: 'Nikdan, Mahdi, et al. “SparseProp: Efficient Sparse Backpropagation for Faster
    Training of Neural Networks at the Edge.” <i>Proceedings of the 40th International
    Conference on Machine Learning</i>, vol. 202, ML Research Press, 2023, pp. 26215–27.'
  short: M. Nikdan, T. Pegolotti, E.B. Iofinova, E. Kurtic, D.-A. Alistarh, in:, Proceedings
    of the 40th International Conference on Machine Learning, ML Research Press, 2023,
    pp. 26215–26227.
conference:
  end_date: 2023-07-29
  location: Honolulu, Hawaii, HI, United States
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2023-07-23
corr_author: '1'
date_created: 2023-10-29T23:01:17Z
date_published: 2023-07-30T00:00:00Z
date_updated: 2025-04-14T07:49:12Z
day: '30'
department:
- _id: DaAl
ec_funded: 1
external_id:
  arxiv:
  - '2302.04852'
intvolume: '       202'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2302.04852
month: '07'
oa: 1
oa_version: Preprint
page: 26215-26227
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the 40th International Conference on Machine Learning
publication_identifier:
  eissn:
  - 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'SparseProp: Efficient sparse backpropagation for faster training of neural
  networks at the edge'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 202
year: '2023'
...
---
_id: '14462'
abstract:
- lang: eng
  text: "We study fine-grained error bounds for differentially private algorithms
    for counting under continual observation. Our main insight is that the matrix
    mechanism when using lower-triangular matrices can be used in the continual observation
    model. More specifically, we give an explicit factorization for the counting matrix
    Mcount and upper bound the error explicitly. We also give a fine-grained analysis,
    specifying the exact constant in the upper bound. Our analysis is based on upper
    and lower bounds of the completely bounded norm (cb-norm) of Mcount\r\n. Along
    the way, we improve the best-known bound of 28 years by Mathias (SIAM Journal
    on Matrix Analysis and Applications, 1993) on the cb-norm of Mcount for a large
    range of the dimension of Mcount. Furthermore, we are the first to give concrete
    error bounds for various problems under continual observation such as binary counting,
    maintaining a histogram, releasing an approximately cut-preserving synthetic graph,
    many graph-based statistics, and substring and episode counting. Finally, we note
    that our result can be used to get a fine-grained error bound for non-interactive
    local learning and the first lower bounds on the additive error for (ϵ,δ)-differentially-private
    counting under continual observation. Subsequent to this work, Henzinger et al.
    (SODA, 2023) showed that our factorization also achieves fine-grained mean-squared
    error."
acknowledgement: "This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (Grant agreement No.\r\n101019564 “The Design of Modern Fully Dynamic Data Structures
  (MoDynStruct)” and from the Austrian Science Fund (FWF) project Z 422-N, and project
  “Fast Algorithms for a Reactive Network Layer (ReactNet)”, P 33775-N, with additional
  funding from the netidee SCIENCE Stiftung, 2020–2024. 2020–2024. JU’s research was
  funded by Decanal Research Grant. A part of this work was done when JU was visiting
  Indian Statistical Institute, Delhi. The authors would like to thank Rajat Bhatia,
  Aleksandar Nikolov, Shanta Laisharam, Vern Paulsen, Ryan Rogers, Abhradeep Thakurta,
  and Sarvagya Upadhyay for useful discussions."
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Hendrik
  full_name: Fichtenberger, Hendrik
  last_name: Fichtenberger
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Jalaj
  full_name: Upadhyay, Jalaj
  last_name: Upadhyay
citation:
  ama: 'Fichtenberger H, Henzinger M, Upadhyay J. Constant matters: Fine-grained error
    bound on differentially private continual observation. In: <i>Proceedings of the
    40th International Conference on Machine Learning</i>. Vol 202. ML Research Press;
    2023:10072-10092.'
  apa: 'Fichtenberger, H., Henzinger, M., &#38; Upadhyay, J. (2023). Constant matters:
    Fine-grained error bound on differentially private continual observation. In <i>Proceedings
    of the 40th International Conference on Machine Learning</i> (Vol. 202, pp. 10072–10092).
    Honolulu, Hawaii, HI, United States: ML Research Press.'
  chicago: 'Fichtenberger, Hendrik, Monika Henzinger, and Jalaj Upadhyay. “Constant
    Matters: Fine-Grained Error Bound on Differentially Private Continual Observation.”
    In <i>Proceedings of the 40th International Conference on Machine Learning</i>,
    202:10072–92. ML Research Press, 2023.'
  ieee: 'H. Fichtenberger, M. Henzinger, and J. Upadhyay, “Constant matters: Fine-grained
    error bound on differentially private continual observation,” in <i>Proceedings
    of the 40th International Conference on Machine Learning</i>, Honolulu, Hawaii,
    HI, United States, 2023, vol. 202, pp. 10072–10092.'
  ista: 'Fichtenberger H, Henzinger M, Upadhyay J. 2023. Constant matters: Fine-grained
    error bound on differentially private continual observation. Proceedings of the
    40th International Conference on Machine Learning. ICML: International Conference
    on Machine Learning, PMLR, vol. 202, 10072–10092.'
  mla: 'Fichtenberger, Hendrik, et al. “Constant Matters: Fine-Grained Error Bound
    on Differentially Private Continual Observation.” <i>Proceedings of the 40th International
    Conference on Machine Learning</i>, vol. 202, ML Research Press, 2023, pp. 10072–92.'
  short: H. Fichtenberger, M. Henzinger, J. Upadhyay, in:, Proceedings of the 40th
    International Conference on Machine Learning, ML Research Press, 2023, pp. 10072–10092.
conference:
  end_date: 2023-07-29
  location: Honolulu, Hawaii, HI, United States
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2023-07-23
corr_author: '1'
date_created: 2023-10-29T23:01:17Z
date_published: 2023-07-30T00:00:00Z
date_updated: 2025-05-19T10:59:58Z
day: '30'
department:
- _id: MoHe
ec_funded: 1
external_id:
  arxiv:
  - '2202.11205'
intvolume: '       202'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.mlr.press/v202/fichtenberger23a/fichtenberger23a.pdf
month: '07'
oa: 1
oa_version: Published Version
page: 10072-10092
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
  call_identifier: H2020
  grant_number: '101019564'
  name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
  grant_number: Z00422
  name: Efficient algorithms
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
  grant_number: P33775
  name: Fast Algorithms for a Reactive Network Layer
publication: Proceedings of the 40th International Conference on Machine Learning
publication_identifier:
  eissn:
  - 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Constant matters: Fine-grained error bound on differentially private continual
  observation'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 202
year: '2023'
...
---
_id: '14464'
abstract:
- lang: eng
  text: 'Given a triangle Δ, we study the problem of determining the smallest enclosing
    and largest embedded isosceles triangles of Δ with respect to area and perimeter.
    This problem was initially posed by Nandakumar [17, 22] and was first studied
    by Kiss, Pach, and Somlai [13], who showed that if Δ′ is the smallest area isosceles
    triangle containing Δ, then Δ′ and Δ share a side and an angle. In the present
    paper, we prove that for any triangle Δ, every maximum area isosceles triangle
    embedded in Δ and every maximum perimeter isosceles triangle embedded in Δ shares
    a side and an angle with Δ. Somewhat surprisingly, the case of minimum perimeter
    enclosing triangles is different: there are infinite families of triangles Δ whose
    minimum perimeter isosceles containers do not share a side and an angle with Δ.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Áron
  full_name: Ambrus, Áron
  last_name: Ambrus
- first_name: Mónika
  full_name: Csikós, Mónika
  last_name: Csikós
- first_name: Gergely
  full_name: Kiss, Gergely
  last_name: Kiss
- first_name: János
  full_name: Pach, János
  id: E62E3130-B088-11EA-B919-BF823C25FEA4
  last_name: Pach
- first_name: Gábor
  full_name: Somlai, Gábor
  last_name: Somlai
citation:
  ama: Ambrus Á, Csikós M, Kiss G, Pach J, Somlai G. Optimal embedded and enclosing
    isosceles triangles. <i>International Journal of Foundations of Computer Science</i>.
    2023;34(7):737-760. doi:<a href="https://doi.org/10.1142/S012905412342008X">10.1142/S012905412342008X</a>
  apa: Ambrus, Á., Csikós, M., Kiss, G., Pach, J., &#38; Somlai, G. (2023). Optimal
    embedded and enclosing isosceles triangles. <i>International Journal of Foundations
    of Computer Science</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/S012905412342008X">https://doi.org/10.1142/S012905412342008X</a>
  chicago: Ambrus, Áron, Mónika Csikós, Gergely Kiss, János Pach, and Gábor Somlai.
    “Optimal Embedded and Enclosing Isosceles Triangles.” <i>International Journal
    of Foundations of Computer Science</i>. World Scientific Publishing, 2023. <a
    href="https://doi.org/10.1142/S012905412342008X">https://doi.org/10.1142/S012905412342008X</a>.
  ieee: Á. Ambrus, M. Csikós, G. Kiss, J. Pach, and G. Somlai, “Optimal embedded and
    enclosing isosceles triangles,” <i>International Journal of Foundations of Computer
    Science</i>, vol. 34, no. 7. World Scientific Publishing, pp. 737–760, 2023.
  ista: Ambrus Á, Csikós M, Kiss G, Pach J, Somlai G. 2023. Optimal embedded and enclosing
    isosceles triangles. International Journal of Foundations of Computer Science.
    34(7), 737–760.
  mla: Ambrus, Áron, et al. “Optimal Embedded and Enclosing Isosceles Triangles.”
    <i>International Journal of Foundations of Computer Science</i>, vol. 34, no.
    7, World Scientific Publishing, 2023, pp. 737–60, doi:<a href="https://doi.org/10.1142/S012905412342008X">10.1142/S012905412342008X</a>.
  short: Á. Ambrus, M. Csikós, G. Kiss, J. Pach, G. Somlai, International Journal
    of Foundations of Computer Science 34 (2023) 737–760.
date_created: 2023-10-29T23:01:18Z
date_published: 2023-10-05T00:00:00Z
date_updated: 2023-12-13T13:04:55Z
day: '05'
department:
- _id: HeEd
doi: 10.1142/S012905412342008X
external_id:
  arxiv:
  - '2205.11637'
  isi:
  - '001080874400001'
intvolume: '        34'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2205.11637
month: '10'
oa: 1
oa_version: Preprint
page: 737-760
publication: International Journal of Foundations of Computer Science
publication_identifier:
  eissn:
  - 1793-6373
  issn:
  - 0129-0541
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimal embedded and enclosing isosceles triangles
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2023'
...
---
_id: '14472'
abstract:
- lang: eng
  text: "Data related to the following paper:\r\n\"Stress granules plug and stabilize
    damaged endolysosomal membranes\" (https://doi.org/10.1038/s41586-023-06726-w)\r\n\r\nAbstract:
    \r\nEndomembrane damage represents a form of stress that is detrimental for eukaryotic
    cells. To cope with this threat, cells possess mechanisms that repair the damage
    and restore cellular homeostasis. Endomembrane damage also results in organelle
    instability and the mechanisms by which cells stabilize damaged endomembranes
    to enable membrane repair remains unknown. In this work we use a minimal coarse-grained
    molecular dynamics system to explore how lipid vesicles undergoing poration in
    a protein-rich medium can be plugged and stabilised by condensate formation. The
    solution of proteins in and out of the vesicle is described by beads dispersed
    in implicit solvent. The membrane is described as a one-bead-thick fluid elastic
    layer of mechanical properties that mimic biological membranes. We tune the interactions
    between solution beads in the different compartments to capture the differences
    between the cytoplasmic and endosomal protein solutions and explore how the system
    responds to different degrees of membrane poration. We find that, in the right
    interaction regime, condensates form rapidly at the damage site upon solution
    mixing and act as a plug that prevents futher mixing and destabilisation of the
    vesicle. Further, when the condensate can interact with the membrane (wetting
    interactions) we find that it mediates pore sealing and membrane repair. This
    research is part of the work published in \"Stress granules plug and stabilize
    damaged endolysosomal membranes\", Bussi et al, Nature, 2023 - 10.1038/s41586-023-06726-w."
article_processing_charge: No
author:
- first_name: Christian Eduardo
  full_name: Vanhille-Campos, Christian Eduardo
  id: 3adeca52-9313-11ed-b1ac-c170b2505714
  last_name: Vanhille-Campos
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
citation:
  ama: Vanhille-Campos CE, Šarić A. Stress granules plug and stabilize damaged endolysosomal
    membranes. 2023. doi:<a href="https://doi.org/10.15479/AT:ISTA:14472">10.15479/AT:ISTA:14472</a>
  apa: Vanhille-Campos, C. E., &#38; Šarić, A. (2023). Stress granules plug and stabilize
    damaged endolysosomal membranes. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT:ISTA:14472">https://doi.org/10.15479/AT:ISTA:14472</a>
  chicago: Vanhille-Campos, Christian Eduardo, and Anđela Šarić. “Stress Granules
    Plug and Stabilize Damaged Endolysosomal Membranes.” Institute of Science and
    Technology Austria, 2023. <a href="https://doi.org/10.15479/AT:ISTA:14472">https://doi.org/10.15479/AT:ISTA:14472</a>.
  ieee: C. E. Vanhille-Campos and A. Šarić, “Stress granules plug and stabilize damaged
    endolysosomal membranes.” Institute of Science and Technology Austria, 2023.
  ista: Vanhille-Campos CE, Šarić A. 2023. Stress granules plug and stabilize damaged
    endolysosomal membranes, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:14472">10.15479/AT:ISTA:14472</a>.
  mla: Vanhille-Campos, Christian Eduardo, and Anđela Šarić. <i>Stress Granules Plug
    and Stabilize Damaged Endolysosomal Membranes</i>. Institute of Science and Technology
    Austria, 2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:14472">10.15479/AT:ISTA:14472</a>.
  short: C.E. Vanhille-Campos, A. Šarić, (2023).
corr_author: '1'
date_created: 2023-10-30T16:38:32Z
date_published: 2023-10-31T00:00:00Z
date_updated: 2025-09-09T13:30:33Z
day: '31'
ddc:
- '570'
department:
- _id: AnSa
doi: 10.15479/AT:ISTA:14472
file:
- access_level: open_access
  checksum: a18706e952e8660c51ede52a167270b7
  content_type: application/zip
  creator: ipalaia
  date_created: 2023-10-30T16:31:08Z
  date_updated: 2023-10-30T16:31:08Z
  file_id: '14473'
  file_name: SGporecondensation-main.zip
  file_size: 62821432
  relation: main_file
  success: 1
- access_level: open_access
  checksum: 389eab31c6509dbc05795017fb618758
  content_type: text/plain
  creator: dernst
  date_created: 2023-10-31T08:57:50Z
  date_updated: 2023-10-31T08:57:50Z
  file_id: '14474'
  file_name: README.txt
  file_size: 1697
  relation: main_file
  success: 1
file_date_updated: 2023-10-31T08:57:50Z
has_accepted_license: '1'
license: https://creativecommons.org/publicdomain/zero/1.0/
month: '10'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '14610'
    relation: used_in_publication
    status: public
status: public
title: Stress granules plug and stabilize damaged endolysosomal membranes
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14485'
abstract:
- lang: eng
  text: "Batching is a technique that stores multiple keys/values in each node of
    a data structure. In sequential search data structures, batching reduces latency
    by reducing the number of cache misses and shortening the chain of pointers to
    dereference. Applying batching to concurrent data structures is challenging, because
    it is difficult to maintain the search property and keep contention low in the
    presence of batching.\r\nIn this paper, we present a general methodology for leveraging
    batching in concurrent search data structures, called BatchBoost. BatchBoost builds
    a search data structure from distinct \"data\" and \"index\" layers. The data
    layer’s purpose is to store a batch of key/value pairs in each of its nodes. The
    index layer uses an unmodified concurrent search data structure to route operations
    to a position in the data layer that is \"close\" to where the corresponding key
    should exist. The requirements on the index and data layers are low: with minimal
    effort, we were able to compose three highly scalable concurrent search data structures
    based on three original data structures as the index layers with a batched version
    of the Lazy List as the data layer. The resulting BatchBoost data structures provide
    significant performance improvements over their original counterparts."
alternative_title:
- LIPIcs
article_number: '35'
article_processing_charge: Yes
author:
- first_name: Vitaly
  full_name: Aksenov, Vitaly
  last_name: Aksenov
- first_name: Michael
  full_name: Anoprenko, Michael
  last_name: Anoprenko
- first_name: Alexander
  full_name: Fedorov, Alexander
  id: 2e711909-896a-11ed-bdf8-eb0f5a2984c6
  last_name: Fedorov
- first_name: Michael
  full_name: Spear, Michael
  last_name: Spear
citation:
  ama: 'Aksenov V, Anoprenko M, Fedorov A, Spear M. Brief announcement: BatchBoost:
    Universal batching for concurrent data structures. In: <i>37th International Symposium
    on Distributed Computing</i>. Vol 281. Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik; 2023. doi:<a href="https://doi.org/10.4230/LIPIcs.DISC.2023.35">10.4230/LIPIcs.DISC.2023.35</a>'
  apa: 'Aksenov, V., Anoprenko, M., Fedorov, A., &#38; Spear, M. (2023). Brief announcement:
    BatchBoost: Universal batching for concurrent data structures. In <i>37th International
    Symposium on Distributed Computing</i> (Vol. 281). L’Aquila, Italy: Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.DISC.2023.35">https://doi.org/10.4230/LIPIcs.DISC.2023.35</a>'
  chicago: 'Aksenov, Vitaly, Michael Anoprenko, Alexander Fedorov, and Michael Spear.
    “Brief Announcement: BatchBoost: Universal Batching for Concurrent Data Structures.”
    In <i>37th International Symposium on Distributed Computing</i>, Vol. 281. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2023. <a href="https://doi.org/10.4230/LIPIcs.DISC.2023.35">https://doi.org/10.4230/LIPIcs.DISC.2023.35</a>.'
  ieee: 'V. Aksenov, M. Anoprenko, A. Fedorov, and M. Spear, “Brief announcement:
    BatchBoost: Universal batching for concurrent data structures,” in <i>37th International
    Symposium on Distributed Computing</i>, L’Aquila, Italy, 2023, vol. 281.'
  ista: 'Aksenov V, Anoprenko M, Fedorov A, Spear M. 2023. Brief announcement: BatchBoost:
    Universal batching for concurrent data structures. 37th International Symposium
    on Distributed Computing. DISC: Symposium on Distributed Computing, LIPIcs, vol.
    281, 35.'
  mla: 'Aksenov, Vitaly, et al. “Brief Announcement: BatchBoost: Universal Batching
    for Concurrent Data Structures.” <i>37th International Symposium on Distributed
    Computing</i>, vol. 281, 35, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2023, doi:<a href="https://doi.org/10.4230/LIPIcs.DISC.2023.35">10.4230/LIPIcs.DISC.2023.35</a>.'
  short: V. Aksenov, M. Anoprenko, A. Fedorov, M. Spear, in:, 37th International Symposium
    on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.
conference:
  end_date: 2023-10-13
  location: L'Aquila, Italy
  name: 'DISC: Symposium on Distributed Computing'
  start_date: 2023-10-09
corr_author: '1'
date_created: 2023-11-05T23:00:53Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2024-10-09T21:07:14Z
day: '01'
ddc:
- '000'
department:
- _id: GradSch
doi: 10.4230/LIPIcs.DISC.2023.35
file:
- access_level: open_access
  checksum: d9f8d2915cccdf2df5905b7cd1b4a560
  content_type: application/pdf
  creator: dernst
  date_created: 2023-11-06T11:45:21Z
  date_updated: 2023-11-06T11:45:21Z
  file_id: '14492'
  file_name: 2023_LIPIcs_Aksenov.pdf
  file_size: 646665
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file_date_updated: 2023-11-06T11:45:21Z
has_accepted_license: '1'
intvolume: '       281'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: 37th International Symposium on Distributed Computing
publication_identifier:
  isbn:
  - '9783959773010'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Brief announcement: BatchBoost: Universal batching for concurrent data structures'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 281
year: '2023'
...
---
_id: '14486'
abstract:
- lang: eng
  text: We present a minimal model of ferroelectric large polarons, which are suggested
    as one of the mechanisms responsible for the unique charge transport properties
    of hybrid perovskites. We demonstrate that short-ranged charge–rotor interactions
    lead to long-range ferroelectric ordering of rotors, which strongly affects the
    carrier mobility. In the nonperturbative regime, where our theory cannot be reduced
    to any of the earlier models, we reveal that the polaron is characterized by large
    coherence length and a roughly tenfold increase of the effective mass as compared
    to the bare mass. These results are in good agreement with other theoretical predictions
    for ferroelectric polarons. Our model establishes a general phenomenological framework
    for ferroelectric polarons providing the starting point for future studies of
    their role in the transport properties of hybrid organic-inorganic perovskites.
acknowledgement: We thank Zh. Alpichshev, A. Volosniev, and A. V. Zampetaki for fruitful
  discussions and comments. This project received funding from the European Union’s
  Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  Grant Agreement No. 101034413. M.L. acknowledges support by the European Research
  Council (ERC) Starting Grant No. 801770 (ANGULON).
article_number: '043016'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Georgios
  full_name: Koutentakis, Georgios
  id: d7b23d3a-9e21-11ec-b482-f76739596b95
  last_name: Koutentakis
- first_name: Areg
  full_name: Ghazaryan, Areg
  id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
  last_name: Ghazaryan
  orcid: 0000-0001-9666-3543
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: Koutentakis G, Ghazaryan A, Lemeshko M. Rotor lattice model of ferroelectric
    large polarons. <i>Physical Review Research</i>. 2023;5(4). doi:<a href="https://doi.org/10.1103/PhysRevResearch.5.043016">10.1103/PhysRevResearch.5.043016</a>
  apa: Koutentakis, G., Ghazaryan, A., &#38; Lemeshko, M. (2023). Rotor lattice model
    of ferroelectric large polarons. <i>Physical Review Research</i>. American Physical
    Society. <a href="https://doi.org/10.1103/PhysRevResearch.5.043016">https://doi.org/10.1103/PhysRevResearch.5.043016</a>
  chicago: Koutentakis, Georgios, Areg Ghazaryan, and Mikhail Lemeshko. “Rotor Lattice
    Model of Ferroelectric Large Polarons.” <i>Physical Review Research</i>. American
    Physical Society, 2023. <a href="https://doi.org/10.1103/PhysRevResearch.5.043016">https://doi.org/10.1103/PhysRevResearch.5.043016</a>.
  ieee: G. Koutentakis, A. Ghazaryan, and M. Lemeshko, “Rotor lattice model of ferroelectric
    large polarons,” <i>Physical Review Research</i>, vol. 5, no. 4. American Physical
    Society, 2023.
  ista: Koutentakis G, Ghazaryan A, Lemeshko M. 2023. Rotor lattice model of ferroelectric
    large polarons. Physical Review Research. 5(4), 043016.
  mla: Koutentakis, Georgios, et al. “Rotor Lattice Model of Ferroelectric Large Polarons.”
    <i>Physical Review Research</i>, vol. 5, no. 4, 043016, American Physical Society,
    2023, doi:<a href="https://doi.org/10.1103/PhysRevResearch.5.043016">10.1103/PhysRevResearch.5.043016</a>.
  short: G. Koutentakis, A. Ghazaryan, M. Lemeshko, Physical Review Research 5 (2023).
corr_author: '1'
date_created: 2023-11-05T23:00:53Z
date_published: 2023-10-05T00:00:00Z
date_updated: 2025-04-14T07:48:54Z
day: '05'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1103/PhysRevResearch.5.043016
ec_funded: 1
external_id:
  arxiv:
  - '2301.09875'
file:
- access_level: open_access
  checksum: cb8de8fed6e09df1a18bd5a5aec5c55c
  content_type: application/pdf
  creator: dernst
  date_created: 2023-11-07T07:52:46Z
  date_updated: 2023-11-07T07:52:46Z
  file_id: '14493'
  file_name: 2023_PhysReviewResearch_Koutentakis.pdf
  file_size: 1127522
  relation: main_file
  success: 1
file_date_updated: 2023-11-07T07:52:46Z
has_accepted_license: '1'
intvolume: '         5'
issue: '4'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
publication: Physical Review Research
publication_identifier:
  issn:
  - 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rotor lattice model of ferroelectric large polarons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2023'
...
---
_id: '14487'
abstract:
- lang: eng
  text: High Mountain Asia (HMA) is among the most vulnerable water towers globally
    and yet future projections of water availability in and from its high-mountain
    catchments remain uncertain, as their hydrologic response to ongoing environmental
    changes is complex. Mechanistic modeling approaches incorporating cryospheric,
    hydrological, and vegetation processes in high spatial, temporal, and physical
    detail have never been applied for high-elevation catchments of HMA. We use a
    land surface model at high spatial and temporal resolution (100 m and hourly)
    to simulate the coupled dynamics of energy, water, and vegetation for the 350
    km2 Langtang catchment (Nepal). We compare our model outputs for one hydrological
    year against a large set of observations to gain insight into the partitioning
    of the water balance at the subseasonal scale and across elevation bands. During
    the simulated hydrological year, we find that evapotranspiration is a key component
    of the total water balance, as it causes about the equivalent of 20% of all the
    available precipitation or 154% of the water production from glacier melt in the
    basin to return directly to the atmosphere. The depletion of the cryospheric water
    budget is dominated by snow melt, but at high elevations is primarily dictated
    by snow and ice sublimation. Snow sublimation is the dominant vapor flux (49%)
    at the catchment scale, accounting for the equivalent of 11% of snowfall, 17%
    of snowmelt, and 75% of ice melt, respectively. We conclude that simulations should
    consider sublimation and other evaporative fluxes explicitly, as otherwise water
    balance estimates can be ill-quantified.
acknowledgement: This project has received funding from the JSPS-SNSF (Japan Society
  for the Promotion of Science and Swiss National Science Foundation) Bilateral Programmes
  project (HOPE, High-ele-vation precipitation in High Mountain Asia; Grant 183633),
  and the European Research Council (ERC) under the European Union's Horizon 2020
  research and innovation program (RAVEN, Rapid mass losses of debris-covered glaciers
  in High Mountain Asia; Grant 772751). We want to thank in particular T. Gurung,
  S. Joshi, J. Shea, W. Immerzeel, and others involved, as well as ICIMOD, for their
  efforts over the past years in observing the meteorology of the Langtang catchment,
  collecting and organizing the data and making them publicly available. We also thank
  the National Geographic Society (Grant NGS-61784R-19) and the Mount Everest Foundation
  (reference 19-24) for providing fieldwork funding for C. L. Fyffe. We thank T. Kramer
  for help with the WSL Hyperion cluster. We are grate-ful for comments by three anonymous
  reviewers and the Associate Editor, who greatly helped to improve the manuscript
  further. Open access funding provided by ETH-Bereich Forschungsanstalten.
article_number: e2022WR033841
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Pascal
  full_name: Buri, Pascal
  last_name: Buri
- first_name: Simone
  full_name: Fatichi, Simone
  last_name: Fatichi
- first_name: Thomas
  full_name: Shaw, Thomas
  id: 3caa3f91-1f03-11ee-96ce-e0e553054d6e
  last_name: Shaw
  orcid: 0000-0001-7640-6152
- first_name: Evan S.
  full_name: Miles, Evan S.
  last_name: Miles
- first_name: Michael
  full_name: Mccarthy, Michael
  id: 22a2674a-61ce-11ee-94b5-d18813baf16f
  last_name: Mccarthy
- first_name: Catriona Louise
  full_name: Fyffe, Catriona Louise
  id: 001b0422-8d15-11ed-bc51-cab6c037a228
  last_name: Fyffe
- first_name: Stefan
  full_name: Fugger, Stefan
  last_name: Fugger
- first_name: Shaoting
  full_name: Ren, Shaoting
  last_name: Ren
- first_name: Marin
  full_name: Kneib, Marin
  last_name: Kneib
- first_name: Achille
  full_name: Jouberton, Achille
  last_name: Jouberton
- first_name: Jakob
  full_name: Steiner, Jakob
  last_name: Steiner
- first_name: Koji
  full_name: Fujita, Koji
  last_name: Fujita
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
  orcid: 0000-0002-5554-8087
citation:
  ama: 'Buri P, Fatichi S, Shaw T, et al. Land surface modeling in the Himalayas:
    On the importance of evaporative fluxes for the water balance of a high-elevation
    catchment. <i>Water Resources Research</i>. 2023;59(10). doi:<a href="https://doi.org/10.1029/2022WR033841">10.1029/2022WR033841</a>'
  apa: 'Buri, P., Fatichi, S., Shaw, T., Miles, E. S., McCarthy, M., Fyffe, C. L.,
    … Pellicciotti, F. (2023). Land surface modeling in the Himalayas: On the importance
    of evaporative fluxes for the water balance of a high-elevation catchment. <i>Water
    Resources Research</i>. Wiley. <a href="https://doi.org/10.1029/2022WR033841">https://doi.org/10.1029/2022WR033841</a>'
  chicago: 'Buri, Pascal, Simone Fatichi, Thomas Shaw, Evan S. Miles, Michael McCarthy,
    Catriona Louise Fyffe, Stefan Fugger, et al. “Land Surface Modeling in the Himalayas:
    On the Importance of Evaporative Fluxes for the Water Balance of a High-Elevation
    Catchment.” <i>Water Resources Research</i>. Wiley, 2023. <a href="https://doi.org/10.1029/2022WR033841">https://doi.org/10.1029/2022WR033841</a>.'
  ieee: 'P. Buri <i>et al.</i>, “Land surface modeling in the Himalayas: On the importance
    of evaporative fluxes for the water balance of a high-elevation catchment,” <i>Water
    Resources Research</i>, vol. 59, no. 10. Wiley, 2023.'
  ista: 'Buri P, Fatichi S, Shaw T, Miles ES, McCarthy M, Fyffe CL, Fugger S, Ren
    S, Kneib M, Jouberton A, Steiner J, Fujita K, Pellicciotti F. 2023. Land surface
    modeling in the Himalayas: On the importance of evaporative fluxes for the water
    balance of a high-elevation catchment. Water Resources Research. 59(10), e2022WR033841.'
  mla: 'Buri, Pascal, et al. “Land Surface Modeling in the Himalayas: On the Importance
    of Evaporative Fluxes for the Water Balance of a High-Elevation Catchment.” <i>Water
    Resources Research</i>, vol. 59, no. 10, e2022WR033841, Wiley, 2023, doi:<a href="https://doi.org/10.1029/2022WR033841">10.1029/2022WR033841</a>.'
  short: P. Buri, S. Fatichi, T. Shaw, E.S. Miles, M. McCarthy, C.L. Fyffe, S. Fugger,
    S. Ren, M. Kneib, A. Jouberton, J. Steiner, K. Fujita, F. Pellicciotti, Water
    Resources Research 59 (2023).
date_created: 2023-11-05T23:00:53Z
date_published: 2023-10-25T00:00:00Z
date_updated: 2025-09-09T13:15:40Z
day: '25'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.1029/2022WR033841
external_id:
  isi:
  - '001091989600005'
file:
- access_level: open_access
  checksum: 7ba9c87228dc09029b16bc800a0ef1a1
  content_type: application/pdf
  creator: dernst
  date_created: 2023-11-07T08:10:44Z
  date_updated: 2023-11-07T08:10:44Z
  file_id: '14495'
  file_name: 2023_WaterResourcesResearch_Buri.pdf
  file_size: 5554901
  relation: main_file
  success: 1
file_date_updated: 2023-11-07T08:10:44Z
has_accepted_license: '1'
intvolume: '        59'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: Water Resources Research
publication_identifier:
  eissn:
  - 1944-7973
  issn:
  - 0043-1397
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '14494'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: 'Land surface modeling in the Himalayas: On the importance of evaporative fluxes
  for the water balance of a high-elevation catchment'
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 59
year: '2023'
...
---
_id: '14489'
abstract:
- lang: eng
  text: Microwave-optics entanglement is a vital component for building hybrid quantum
    networks. Here, a new mechanism for preparing stationary entanglement between
    microwave and optical cavity fields in a cavity optomagnomechanical system is
    proposed. It consists of a magnon mode in a ferrimagnetic crystal that couples
    directly to a microwave cavity mode via the magnetic dipole interaction and indirectly
    to an optical cavity through the deformation displacement of the crystal. The
    mechanical displacement is induced by the magnetostrictive force and coupled to
    the optical cavity via radiation pressure. Both the opto- and magnomechanical
    couplings are dispersive. Magnon–phonon entanglement is created via magnomechanical
    parametric down-conversion, which is further distributed to optical and microwave
    photons via simultaneous optomechanical beamsplitter interaction and electromagnonic
    state-swap interaction, yielding stationary microwave-optics entanglement. The
    microwave-optics entanglement is robust against thermal noise, which will find
    broad potential applications in quantum networks and quantum information processing
    with hybrid quantum systems.
acknowledgement: This work was supported by the National Key Research and Development
  Program of China (Grant no. 2022YFA1405200), the National Natural Science Foundation
  of China (Nos. 92265202), and the European Research Council (ERC CoG Q-ECHOS, 101001005).
article_number: '2200866'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Zhi Yuan
  full_name: Fan, Zhi Yuan
  last_name: Fan
- first_name: Liu
  full_name: Qiu, Liu
  id: 45e99c0d-1eb1-11eb-9b96-ed8ab2983cac
  last_name: Qiu
  orcid: 0000-0003-4345-4267
- first_name: Simon
  full_name: Gröblacher, Simon
  last_name: Gröblacher
- first_name: Jie
  full_name: Li, Jie
  last_name: Li
citation:
  ama: Fan ZY, Qiu L, Gröblacher S, Li J. Microwave-optics entanglement via cavity
    optomagnomechanics. <i>Laser and Photonics Reviews</i>. 2023;17(12). doi:<a href="https://doi.org/10.1002/lpor.202200866">10.1002/lpor.202200866</a>
  apa: Fan, Z. Y., Qiu, L., Gröblacher, S., &#38; Li, J. (2023). Microwave-optics
    entanglement via cavity optomagnomechanics. <i>Laser and Photonics Reviews</i>.
    Wiley. <a href="https://doi.org/10.1002/lpor.202200866">https://doi.org/10.1002/lpor.202200866</a>
  chicago: Fan, Zhi Yuan, Liu Qiu, Simon Gröblacher, and Jie Li. “Microwave-Optics
    Entanglement via Cavity Optomagnomechanics.” <i>Laser and Photonics Reviews</i>.
    Wiley, 2023. <a href="https://doi.org/10.1002/lpor.202200866">https://doi.org/10.1002/lpor.202200866</a>.
  ieee: Z. Y. Fan, L. Qiu, S. Gröblacher, and J. Li, “Microwave-optics entanglement
    via cavity optomagnomechanics,” <i>Laser and Photonics Reviews</i>, vol. 17, no.
    12. Wiley, 2023.
  ista: Fan ZY, Qiu L, Gröblacher S, Li J. 2023. Microwave-optics entanglement via
    cavity optomagnomechanics. Laser and Photonics Reviews. 17(12), 2200866.
  mla: Fan, Zhi Yuan, et al. “Microwave-Optics Entanglement via Cavity Optomagnomechanics.”
    <i>Laser and Photonics Reviews</i>, vol. 17, no. 12, 2200866, Wiley, 2023, doi:<a
    href="https://doi.org/10.1002/lpor.202200866">10.1002/lpor.202200866</a>.
  short: Z.Y. Fan, L. Qiu, S. Gröblacher, J. Li, Laser and Photonics Reviews 17 (2023).
date_created: 2023-11-05T23:00:54Z
date_published: 2023-12-01T00:00:00Z
date_updated: 2025-09-09T13:13:18Z
day: '01'
department:
- _id: JoFi
doi: 10.1002/lpor.202200866
external_id:
  arxiv:
  - '2208.10703'
  isi:
  - '001088860000001'
intvolume: '        17'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2208.10703
month: '12'
oa: 1
oa_version: Preprint
publication: Laser and Photonics Reviews
publication_identifier:
  eissn:
  - 1863-8899
  issn:
  - 1863-8880
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microwave-optics entanglement via cavity optomagnomechanics
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2023'
...
