---
OA_place: publisher
OA_type: hybrid
_id: '17479'
abstract:
- lang: eng
text: Phonon polaritons (PhPs), light coupled to lattice vibrations, in the highly
anisotropic polar layered material molybdenum trioxide (α-MoO3) are currently
the focus of intense research efforts due to their extreme subwavelength field
confinement, directional propagation, and unprecedented low losses. Nevertheless,
prior research has primarily concentrated on exploiting the squeezing and steering
capabilities of α-MoO3 PhPs, without inquiring much into the dominant microscopic
mechanism that determines their long lifetimes, which is key for their implementation
in nanophotonic applications. This study delves into the fundamental processes
that govern PhP damping in α-MoO3 by combining ab initio calculations with scattering-type
scanning near-field optical microscopy (s-SNOM) and Fourier transform infrared
(FTIR) spectroscopy measurements across a broad temperature range (8–300 K). The
remarkable agreement between our theoretical predictions and experimental observations
allows us to identify third-order anharmonic phonon–phonon scattering as the main
damping mechanism of α-MoO3 PhPs. These findings shed light on the fundamental
limits of low-loss PhPs, which is a crucial factor for assessing their implementation
into nanophotonic devices.
acknowledgement: 'Funding Sources ─ A.I.F.T.-M. and G.Á.-P. acknowledge support through
the Severo Ochoa program from the Government of the Principality of Asturias (references
PA-21-PF-BP20-117 and PA20-PF-BP19-053, respectively). A.B.K. and J.T.-G. acknowledge
support from the Swiss National Science Foundation (grant # 200020_201096). J.M.-S.
acknowledges financial support from the Ramón y Cajal Program of the Government
of Spain and FSE (RYC2018-026196-I), the Spanish Ministry of Science and Innovation
(State Plan for Scientific and Technical Research and Innovation grant number PID2019-110308GA-I00/AEI/10.13039/501100011033)
and project PCI2022-132953 funded by MCIN/AEI/10.13039/501100011033 and the EU “NextGenerationEU”/PRTR”.
P.A.-G. acknowledges support from the European Research Council under starting grant
no. 715496, 2DNANOPTICA and the Spanish Ministry of Science and Innovation (State
Plan for Scientific and Technical Research and Innovation grant number PID2019-111156GB-I00).
A.Y.N. acknowledges the Spanish Ministry of Science and Innovation (grant PID2020-115221GB-C42)
and the Basque Department of Education (grant PIBA-2023-1-0007). M.V. and J.I.M.
acknowledge support by Spanish MCIN/AEI/10.13039/501100011033/FEDER, UE under grant
PID2022-136784NB and by Asturias FICYT under grant AYUD/2021/51185 with the support
of FEDER funds. I.E. acknowledges funding from the Spanish Ministry of Science and
Innovation (Grant No. PID2022-142861NA-I00) and the Department of Education, Universities,
and Research of the Eusko Jaurlaritza and the University of the Basque Country UPV/EHU
(Grant No. IT1527-22). J. Duan acknowledges the support from the Beijing Natural
Science Foundation (Grant No. Z240005), and National Natural Science Foundation
of China.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Javier
full_name: Taboada-Gutiérrez, Javier
last_name: Taboada-Gutiérrez
- first_name: Yixi
full_name: Zhou, Yixi
last_name: Zhou
- first_name: Ana I.F.
full_name: Tresguerres-Mata, Ana I.F.
last_name: Tresguerres-Mata
- first_name: Christian
full_name: Lanza, Christian
last_name: Lanza
- first_name: Abel
full_name: Martínez-Suárez, Abel
last_name: Martínez-Suárez
- first_name: Gonzalo
full_name: Álvarez-Pérez, Gonzalo
last_name: Álvarez-Pérez
- first_name: Jiahua
full_name: Duan, Jiahua
last_name: Duan
- first_name: José Ignacio
full_name: Martín, José Ignacio
last_name: Martín
- first_name: María
full_name: Vélez, María
last_name: Vélez
- first_name: Ivan
full_name: Prieto Gonzalez, Ivan
id: 2A307FE2-F248-11E8-B48F-1D18A9856A87
last_name: Prieto Gonzalez
orcid: 0000-0002-7370-5357
- first_name: Adrien
full_name: Bercher, Adrien
last_name: Bercher
- first_name: Jérémie
full_name: Teyssier, Jérémie
last_name: Teyssier
- first_name: Ion
full_name: Errea, Ion
last_name: Errea
- first_name: Alexey Y.
full_name: Nikitin, Alexey Y.
last_name: Nikitin
- first_name: Javier
full_name: Martín-Sánchez, Javier
last_name: Martín-Sánchez
- first_name: Alexey B.
full_name: Kuzmenko, Alexey B.
last_name: Kuzmenko
- first_name: Pablo
full_name: Alonso-González, Pablo
last_name: Alonso-González
citation:
ama: Taboada-Gutiérrez J, Zhou Y, Tresguerres-Mata AIF, et al. Unveiling the mechanism
of phonon-polariton damping in α‑MoO3. ACS Photonics. 2024;11(9):3570-3577.
doi:10.1021/acsphotonics.4c00485
apa: Taboada-Gutiérrez, J., Zhou, Y., Tresguerres-Mata, A. I. F., Lanza, C., Martínez-Suárez,
A., Álvarez-Pérez, G., … Alonso-González, P. (2024). Unveiling the mechanism of
phonon-polariton damping in α‑MoO3. ACS Photonics. American Chemical Society.
https://doi.org/10.1021/acsphotonics.4c00485
chicago: Taboada-Gutiérrez, Javier, Yixi Zhou, Ana I.F. Tresguerres-Mata, Christian
Lanza, Abel Martínez-Suárez, Gonzalo Álvarez-Pérez, Jiahua Duan, et al. “Unveiling
the Mechanism of Phonon-Polariton Damping in Α‑MoO3.” ACS Photonics. American
Chemical Society, 2024. https://doi.org/10.1021/acsphotonics.4c00485.
ieee: J. Taboada-Gutiérrez et al., “Unveiling the mechanism of phonon-polariton
damping in α‑MoO3,” ACS Photonics, vol. 11, no. 9. American Chemical Society,
pp. 3570–3577, 2024.
ista: Taboada-Gutiérrez J, Zhou Y, Tresguerres-Mata AIF, Lanza C, Martínez-Suárez
A, Álvarez-Pérez G, Duan J, Martín JI, Vélez M, Prieto Gonzalez I, Bercher A,
Teyssier J, Errea I, Nikitin AY, Martín-Sánchez J, Kuzmenko AB, Alonso-González
P. 2024. Unveiling the mechanism of phonon-polariton damping in α‑MoO3. ACS Photonics.
11(9), 3570–3577.
mla: Taboada-Gutiérrez, Javier, et al. “Unveiling the Mechanism of Phonon-Polariton
Damping in Α‑MoO3.” ACS Photonics, vol. 11, no. 9, American Chemical Society,
2024, pp. 3570–77, doi:10.1021/acsphotonics.4c00485.
short: J. Taboada-Gutiérrez, Y. Zhou, A.I.F. Tresguerres-Mata, C. Lanza, A. Martínez-Suárez,
G. Álvarez-Pérez, J. Duan, J.I. Martín, M. Vélez, I. Prieto Gonzalez, A. Bercher,
J. Teyssier, I. Errea, A.Y. Nikitin, J. Martín-Sánchez, A.B. Kuzmenko, P. Alonso-González,
ACS Photonics 11 (2024) 3570–3577.
das_tickbox: '0'
date_created: 2024-09-01T22:01:09Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2026-10-21T08:08:01Z
day: '01'
ddc:
- '530'
department:
- _id: NanoFab
doi: 10.1021/acsphotonics.4c00485
external_id:
arxiv:
- '2408.09811'
isi:
- '001298164600001'
pmid:
- '39310295'
file:
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checksum: bd7e6a138c406e93eaf0a6268fc42bfe
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creator: dernst
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file_size: 2664512
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has_accepted_license: '1'
intvolume: ' 11'
isi: 1
issue: '9'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '09'
oa: 1
oa_version: Published Version
page: 3570-3577
pmid: 1
publication: ACS Photonics
publication_identifier:
eissn:
- 2330-4022
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Unveiling the mechanism of phonon-polariton damping in α‑MoO3
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 11
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18906'
abstract:
- lang: eng
text: "Expander decompositions of graphs have significantly advanced the understanding
of many classical graph problems and led to numerous fundamental theoretical results.
However, their adoption in practice has been hindered due to their inherent intricacies
and large hidden factors in their asymptotic running times. Here, we introduce
the first practically efficient algorithm for computing expander decompositions
and their hierarchies and demonstrate its effectiveness and utility by incorporating
it as the core component in a novel solver for the normalized cut graph clustering
objective.\r\nOur extensive experiments on a variety of large graphs show that
our expander-based algorithm outperforms state-of-the-art solvers for normalized
cut with respect to solution quality by a large margin on a variety of graph classes
such as citation, e-mail, and social networks or web graphs while remaining competitive
in running time."
acknowledgement: "Monika Henzinger: This project has received funding from the European
Research\r\nCouncil (ERC) under the European Union’s Horizon 2020 research and innovation
programme (Grant agreement No. 101019564) and the Austrian Science Fund (FWF) grant
DOI 10.55776/Z422, grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with
additional funding from the netidee SCIENCE Stiftung, 2020–2024.\r\nHarald Räcke,
Robin Münk: This project has received funding from the Deutsche Forschungsgemeinschaft
(DFG, German Research Foundation) – 498605858 and 470029389."
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Kathrin
full_name: Hanauer, Kathrin
last_name: Hanauer
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Robin
full_name: Münk, Robin
last_name: Münk
- first_name: Harald
full_name: Räcke, Harald
last_name: Räcke
- first_name: Maximilian
full_name: Vötsch, Maximilian
last_name: Vötsch
citation:
ama: 'Hanauer K, Henzinger M, Münk R, Räcke H, Vötsch M. Expander hierarchies for
normalized cuts on graphs. In: Proceedings of the 30th ACM SIGKDD Conference
on Knowledge Discovery and Data Mining. ACM; 2024:1016-1027. doi:10.1145/3637528.3671978'
apa: 'Hanauer, K., Henzinger, M., Münk, R., Räcke, H., & Vötsch, M. (2024).
Expander hierarchies for normalized cuts on graphs. In Proceedings of the 30th
ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 1016–1027).
Barcelona, Spain: ACM. https://doi.org/10.1145/3637528.3671978'
chicago: Hanauer, Kathrin, Monika Henzinger, Robin Münk, Harald Räcke, and Maximilian
Vötsch. “Expander Hierarchies for Normalized Cuts on Graphs.” In Proceedings
of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining,
1016–27. ACM, 2024. https://doi.org/10.1145/3637528.3671978.
ieee: K. Hanauer, M. Henzinger, R. Münk, H. Räcke, and M. Vötsch, “Expander hierarchies
for normalized cuts on graphs,” in Proceedings of the 30th ACM SIGKDD Conference
on Knowledge Discovery and Data Mining, Barcelona, Spain, 2024, pp. 1016–1027.
ista: 'Hanauer K, Henzinger M, Münk R, Räcke H, Vötsch M. 2024. Expander hierarchies
for normalized cuts on graphs. Proceedings of the 30th ACM SIGKDD Conference on
Knowledge Discovery and Data Mining. KDD: Knowledge Discovery and Data Mining,
1016–1027.'
mla: Hanauer, Kathrin, et al. “Expander Hierarchies for Normalized Cuts on Graphs.”
Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data
Mining, ACM, 2024, pp. 1016–27, doi:10.1145/3637528.3671978.
short: K. Hanauer, M. Henzinger, R. Münk, H. Räcke, M. Vötsch, in:, Proceedings
of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, ACM,
2024, pp. 1016–1027.
conference:
end_date: 2024-08-29
location: Barcelona, Spain
name: 'KDD: Knowledge Discovery and Data Mining'
start_date: 2024-08-05
das_tickbox: '0'
date_created: 2025-01-27T13:20:26Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2026-10-21T08:06:58Z
day: '01'
ddc:
- '000'
department:
- _id: MoHe
doi: 10.1145/3637528.3671978
ec_funded: 1
external_id:
isi:
- '001324524201013'
file:
- access_level: open_access
checksum: 1265d5cf6aa5f94157631651723c4a2b
content_type: application/pdf
creator: dernst
date_created: 2025-01-27T13:25:23Z
date_updated: 2025-01-27T13:25:23Z
file_id: '18907'
file_name: 2024_ACMKDD_Hanauer.pdf
file_size: 1450331
relation: main_file
success: 1
file_date_updated: 2025-01-27T13:25:23Z
fulldoi: https://doi.org/10.1145/3637528.3671978
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1016-1027
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
call_identifier: H2020
grant_number: '101019564'
name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
grant_number: Z00422
name: Efficient algorithms
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
grant_number: I05982
name: Static and Dynamic Hierarchical Graph Decompositions
publication: Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery
and Data Mining
publication_identifier:
isbn:
- '9798400704901'
publication_status: published
publisher: ACM
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Expander hierarchies for normalized cuts on graphs
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '17188'
abstract:
- lang: eng
text: "In a delegation problem, a principal P with commitment power tries to pick
one out of \U0001D45B options.\r\nEach option is drawn independently from a known
distribution. Instead of inspecting the options\r\nherself, P delegates the information
acquisition to a rational and self-interested agent A. After\r\ninspection, A
proposes one of the options, and P can accept or reject.\r\nDelegation is a classic
setting in economic information design with many prominent applications,\r\nbut
the computational problems are only poorly understood. In this paper, we study
a natural\r\nonline variant of delegation, in which the agent searches through
the options in an online fashion.\r\nFor each option, he has to irrevocably decide
if he wants to propose the current option or discard\r\nit, before seeing information
on the next option(s). How can we design algorithms for P that\r\napproximate
the utility of her best option in hindsight?\r\nWe show that in general P can
obtain a Θ(1∕\U0001D45B)-approximation and extend this result to ratios\r\nof
Θ(\U0001D458∕\U0001D45B) in case (1) A has a lookahead of \U0001D458 rounds, or
(2) A can propose up to \U0001D458 different\r\noptions. We provide fine-grained
bounds independent of \U0001D45B based on three parameters. If the ratio\r\nof
maximum and minimum utility for A is bounded by a factor \U0001D6FC, we obtain
an Ω(loglog \U0001D6FC∕ log \U0001D6FC)-\r\napproximation algorithm, and we show
that this is best possible. Additionally, if P cannot\r\ndistinguish options with
the same value for herself, we show that ratios polynomial in 1∕\U0001D6FC cannot\r\nbe
avoided. If there are at most \U0001D6FD different utility values for A, we show
a Θ(1∕\U0001D6FD)-approximation.\r\nIf the utilities of P and A for each option
are related by a factor \U0001D6FE, we obtain an Ω(1∕ log \U0001D6FE)-\r\napproximation,
where \U0001D442(log log \U0001D6FE∕ log \U0001D6FE) is best possible."
acknowledgement: Hahn gratefully acknowledges the support of GIF grant I-1419-118.4/2017.
Hoefer gratefully acknowledges the support of GIF grant I-1419-118.4/2017, DFG Research
Unit ADYN (project number 411362735), and DFG grant Ho 3831/9-1 (project number
514505843).
article_number: '104171'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Pirmin
full_name: Braun, Pirmin
last_name: Braun
- first_name: Niklas
full_name: Hahn, Niklas
id: 0a01c7b2-b823-11ed-9928-cc3f874f9ffd
last_name: Hahn
- first_name: Martin
full_name: Hoefer, Martin
last_name: Hoefer
- first_name: Conrad
full_name: Schecker, Conrad
last_name: Schecker
citation:
ama: Braun P, Hahn N, Hoefer M, Schecker C. Delegated online search. Artificial
Intelligence. 2024;334. doi:10.1016/j.artint.2024.104171
apa: Braun, P., Hahn, N., Hoefer, M., & Schecker, C. (2024). Delegated online
search. Artificial Intelligence. Elsevier. https://doi.org/10.1016/j.artint.2024.104171
chicago: Braun, Pirmin, Niklas Hahn, Martin Hoefer, and Conrad Schecker. “Delegated
Online Search.” Artificial Intelligence. Elsevier, 2024. https://doi.org/10.1016/j.artint.2024.104171.
ieee: P. Braun, N. Hahn, M. Hoefer, and C. Schecker, “Delegated online search,”
Artificial Intelligence, vol. 334. Elsevier, 2024.
ista: Braun P, Hahn N, Hoefer M, Schecker C. 2024. Delegated online search. Artificial
Intelligence. 334, 104171.
mla: Braun, Pirmin, et al. “Delegated Online Search.” Artificial Intelligence,
vol. 334, 104171, Elsevier, 2024, doi:10.1016/j.artint.2024.104171.
short: P. Braun, N. Hahn, M. Hoefer, C. Schecker, Artificial Intelligence 334 (2024).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: "No data was used for the research described in the article.\r\n"
date_created: 2024-06-30T22:01:05Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2026-10-21T08:06:15Z
day: '01'
ddc:
- '000'
department:
- _id: MoHe
doi: 10.1016/j.artint.2024.104171
external_id:
arxiv:
- '2203.01084'
isi:
- '001260448100001'
file:
- access_level: open_access
checksum: f02a56bc7ea88f41fcc68968e4ceddf3
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T10:45:24Z
date_updated: 2025-01-09T10:45:24Z
file_id: '18806'
file_name: 2024_ArtificialIntelligence_Braun.pdf
file_size: 772226
relation: main_file
success: 1
file_date_updated: 2025-01-09T10:45:24Z
fulldoi: https://doi.org/10.1016/j.artint.2024.104171
has_accepted_license: '1'
intvolume: ' 334'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication: Artificial Intelligence
publication_identifier:
issn:
- 0004-3702
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: not applicable
scopus_import: '1'
status: public
supplementarymaterial: no
title: Delegated online search
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 334
year: '2024'
...
---
_id: '17238'
abstract:
- lang: eng
text: We know that heritable variation is abundant, and that selection causes all
but the smallest populations to rapidly shift beyond their original trait distribution.
So then, what limits the range of a species? There are physical constraints and
also population genetic limits to the effectiveness of selection, ultimately set
by population size. Global adaptation, where the same genotype is favoured over
the whole range, is most efficient when based on a multitude of weakly selected
alleles and is effective even when local demes are small, provided that there
is some gene flow. In contrast, local adaptation is sensitive to gene flow and
may require alleles with substantial effect. How can populations combine the advantages
of large effective size with the ability to specialise into local niches? To what
extent does reproductive isolation help resolve this tension? I address these
questions using eco-evolutionary models of polygenic adaptation, contrasting discrete
demes with continuousspace.
acknowledgement: This work was supported by a grant from the ERC, 101055327, “HaplotypeStructure”.
I thank Himani Sachdeva, Michal Hledik, Jitka Polechova, and the reviewers for their
helpful comments.
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: 'Barton NH. Limits to species’ range: The tension between local and global
adaptation. Journal of Evolutionary Biology. 2024;37(6):605-615. doi:10.1093/jeb/voae052'
apa: 'Barton, N. H. (2024). Limits to species’ range: The tension between local
and global adaptation. Journal of Evolutionary Biology. Oxford University
Press. https://doi.org/10.1093/jeb/voae052'
chicago: 'Barton, Nicholas H. “Limits to Species’ Range: The Tension between Local
and Global Adaptation.” Journal of Evolutionary Biology. Oxford University
Press, 2024. https://doi.org/10.1093/jeb/voae052.'
ieee: 'N. H. Barton, “Limits to species’ range: The tension between local and global
adaptation,” Journal of Evolutionary Biology, vol. 37, no. 6. Oxford University
Press, pp. 605–615, 2024.'
ista: 'Barton NH. 2024. Limits to species’ range: The tension between local and
global adaptation. Journal of Evolutionary Biology. 37(6), 605–615.'
mla: 'Barton, Nicholas H. “Limits to Species’ Range: The Tension between Local and
Global Adaptation.” Journal of Evolutionary Biology, vol. 37, no. 6, Oxford
University Press, 2024, pp. 605–15, doi:10.1093/jeb/voae052.'
short: N.H. Barton, Journal of Evolutionary Biology 37 (2024) 605–615.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: All code used to generate the figures is in the accompanying
Mathematica notebook.
date_created: 2024-07-14T22:01:12Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2026-10-21T08:11:09Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/jeb/voae052
external_id:
isi:
- '001225323900001'
pmid:
- '38683160'
file:
- access_level: open_access
checksum: 94e6b68bddf6cadcec29c7f41647359f
content_type: application/pdf
creator: dernst
date_created: 2024-07-15T09:45:25Z
date_updated: 2024-07-15T09:45:25Z
file_id: '17241'
file_name: 2024_JourEvolutionaryBiology_Barton.pdf
file_size: 1194263
relation: main_file
success: 1
file_date_updated: 2024-07-15T09:45:25Z
fulldoi: https://doi.org/10.1093/jeb/voae052
has_accepted_license: '1'
intvolume: ' 37'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 605-615
pmid: 1
project:
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
grant_number: '101055327'
name: Understanding the evolution of continuous genomes
publication: Journal of Evolutionary Biology
publication_identifier:
eissn:
- 1420-9101
issn:
- 1010-061X
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
researchdata_availability: yes (supplementary data)
scopus_import: '1'
status: public
supplementarymaterial: yes
title: 'Limits to species'' range: The tension between local and global adaptation'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 37
year: '2024'
...
---
_id: '17237'
abstract:
- lang: eng
text: 'The impact of climate change on populations will be contingent upon their
contemporary adaptive evolution. In this study, we investigated the contemporary
evolution of 4 populations of the cold-water kelp Laminaria digitata by analyzing
their spatial and temporal genomic variations using ddRAD-sequencing. These populations
were sampled from the center to the southern margin of its north-eastern Atlantic
distribution at 2 time points, spanning at least 2 generations. Through genome
scans for local adaptation at a single time point, we identified candidate loci
that showed clinal variation correlated with changes in sea surface temperature
(SST) along latitudinal gradients. This finding suggests that SST may drive the
adaptive response of these kelp populations, although factors such as species’
demographic history should also be considered. Additionally, we performed a simulation
approach to distinguish the effect of selection from genetic drift in allele frequency
changes over time. This enabled the detection of loci in the southernmost population
that exhibited temporal differentiation beyond what would be expected from genetic
drift alone: these are candidate loci which could have evolved under selection
over time. In contrast, we did not detect any outlier locus based on temporal
differentiation in the population from the North Sea, which also displayed low
and decreasing levels of genetic diversity. The diverse evolutionary scenarios
observed among populations can be attributed to variations in the prevalence of
selection relative to genetic drift across different environments. Therefore,
our study highlights the potential of temporal genomics to offer valuable insights
into the contemporary evolution of marine foundation species facing climate change.'
acknowledgement: "This work was funded by the EU project MARFOR Biodiversa/004/2015.
L.F. was additionally funded by the Region Bretagne (ARED 2017 REEALG) and the NOMIS
Foundation. The project leading to this publication has received funding from the
EC2CO (CNRS) fund and from the European FEDER Fund under project 1166-39417.\r\nThis
work is especially dedicated to the memory of Gernot Glöckner who contributed to
the sequencing of Laminaria digitata genome and passed away in very recent time.
The authors thank the ABiMS platform of the Roscoff biological station (http://abims.sb-roscoff.fr)
for providing the HPC resources that contributed to the search results reported
in this document. We also acknowledge the staff of the “Cluster de calcul intensif
HPC” Platform of the OSU Institut Pythéas (Aix-Marseille Université, INSU-CNRS)
for providing the computing facilities."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lauric
full_name: Reynes, Lauric
last_name: Reynes
- first_name: Louise
full_name: Fouqueau, Louise
id: 1676e173-8143-11ed-8927-fe165216a93f
last_name: Fouqueau
orcid: 0000-0003-0371-9339
- first_name: Didier
full_name: Aurelle, Didier
last_name: Aurelle
- first_name: Stephane
full_name: Mauger, Stephane
last_name: Mauger
- first_name: Christophe
full_name: Destombe, Christophe
last_name: Destombe
- first_name: Myriam
full_name: Valero, Myriam
last_name: Valero
citation:
ama: Reynes L, Fouqueau L, Aurelle D, Mauger S, Destombe C, Valero M. Temporal genomics
help in deciphering neutral and adaptive patterns in the contemporary evolution
of kelp populations. Journal of Evolutionary Biology. 2024;37(6):677-692.
doi:10.1093/jeb/voae048
apa: Reynes, L., Fouqueau, L., Aurelle, D., Mauger, S., Destombe, C., & Valero,
M. (2024). Temporal genomics help in deciphering neutral and adaptive patterns
in the contemporary evolution of kelp populations. Journal of Evolutionary
Biology. Oxford University Press. https://doi.org/10.1093/jeb/voae048
chicago: Reynes, Lauric, Louise Fouqueau, Didier Aurelle, Stephane Mauger, Christophe
Destombe, and Myriam Valero. “Temporal Genomics Help in Deciphering Neutral and
Adaptive Patterns in the Contemporary Evolution of Kelp Populations.” Journal
of Evolutionary Biology. Oxford University Press, 2024. https://doi.org/10.1093/jeb/voae048.
ieee: L. Reynes, L. Fouqueau, D. Aurelle, S. Mauger, C. Destombe, and M. Valero,
“Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary
evolution of kelp populations,” Journal of Evolutionary Biology, vol. 37,
no. 6. Oxford University Press, pp. 677–692, 2024.
ista: Reynes L, Fouqueau L, Aurelle D, Mauger S, Destombe C, Valero M. 2024. Temporal
genomics help in deciphering neutral and adaptive patterns in the contemporary
evolution of kelp populations. Journal of Evolutionary Biology. 37(6), 677–692.
mla: Reynes, Lauric, et al. “Temporal Genomics Help in Deciphering Neutral and Adaptive
Patterns in the Contemporary Evolution of Kelp Populations.” Journal of Evolutionary
Biology, vol. 37, no. 6, Oxford University Press, 2024, pp. 677–92, doi:10.1093/jeb/voae048.
short: L. Reynes, L. Fouqueau, D. Aurelle, S. Mauger, C. Destombe, M. Valero, Journal
of Evolutionary Biology 37 (2024) 677–692.
das_tickbox: '1'
dataavailabilitystatement: Individual high-quality reads (paired-end reads) generated
in the present study (fq.gz files) and the filtered vcf file can be accessed via
the Dryad repository at https://doi.org/10.5061/dryad.tb2rbp064. Additionally, the
scaffolds assembly of the Laminaria digitata genome, utilized for read mapping and
produced by Gernot Glöckner, is also available in the same repository. Furthermore,
the custom R script developed for identifying temporal outlier SNPs, along with
the FST datasets comparing observed and simulated FST between time points, can be
found on GitHub at https://doi.org/10.5281/zenodo.10946282.
date_created: 2024-07-14T22:01:12Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2026-10-21T08:10:14Z
day: '01'
department:
- _id: NiBa
doi: 10.1093/jeb/voae048
external_id:
arxiv:
- '2404.14003'
pmid:
- '38629140'
fulldoi: https://doi.org/10.1093/jeb/voae048
intvolume: ' 37'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2404.14003
month: '06'
oa: 1
oa_version: Preprint
page: 677-692
pmid: 1
publication: Journal of Evolutionary Biology
publication_identifier:
eissn:
- 1420-9101
issn:
- 1010-061X
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
record:
- id: '22867'
relation: research_data
status: public
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Temporal genomics help in deciphering neutral and adaptive patterns in the
contemporary evolution of kelp populations
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 37
year: '2024'
...
---
OA_type: closed access
_id: '18922'
abstract:
- lang: eng
text: 'Let G be a directed graph with m edges and n vertices. We present a deterministic
linear-time algorithm for computing the 3-edge-connected components of G. This
is a significant improvement over the previous best bound by Georgiadis et al.
[SODA 2023], which is Õ(m√{m}) and randomized. Our result is based on a novel
characterization of 2-edge cuts in directed graphs and on a new technique that
exploits the concept of divergent spanning trees and 2-connectivity-light graphs,
and requires a careful modification of the minset-poset technique of Gabow [TALG
2016]. As a side result, our new technique yields also an oracle for providing
in constant time a minimum edge-cut for any two vertices that are not 3-edge-connected.
The oracle uses space O(n) and can be built in O(mlog n) time: given two query
vertices, it determines in constant time whether they are 3-edge-connected, or
provides a k-edge cut, with k≤ 2, that separates them.'
acknowledgement: "Giuseppe F. Italiano was partially supported by the Italian Ministry
of\r\nUniversity and Reseach under PRIN Project n. 2022TS4Y3N - EXPAND: scalable
algorithms for EXPloratory Analyses of heterogeneous and dynamic Networked Data.\r\n"
article_processing_charge: No
author:
- first_name: Loukas
full_name: Georgiadis, Loukas
last_name: Georgiadis
- first_name: Giuseppe F.
full_name: Italiano, Giuseppe F.
last_name: Italiano
- first_name: Evangelos
full_name: Kosinas, Evangelos
id: 4c7f9625-dbbc-11ee-9d86-bdcc2db5a949
last_name: Kosinas
citation:
ama: 'Georgiadis L, Italiano GF, Kosinas E. Computing the 3-edge-connected components
of directed graphs in linear time. In: 65th Annual Symposium on Foundations
of Computer Science. IEEE; 2024:62-85. doi:10.1109/focs61266.2024.00015'
apa: 'Georgiadis, L., Italiano, G. F., & Kosinas, E. (2024). Computing the 3-edge-connected
components of directed graphs in linear time. In 65th Annual Symposium on Foundations
of Computer Science (pp. 62–85). Chicago, IL, United States: IEEE. https://doi.org/10.1109/focs61266.2024.00015'
chicago: Georgiadis, Loukas, Giuseppe F. Italiano, and Evangelos Kosinas. “Computing
the 3-Edge-Connected Components of Directed Graphs in Linear Time.” In 65th
Annual Symposium on Foundations of Computer Science, 62–85. IEEE, 2024. https://doi.org/10.1109/focs61266.2024.00015.
ieee: L. Georgiadis, G. F. Italiano, and E. Kosinas, “Computing the 3-edge-connected
components of directed graphs in linear time,” in 65th Annual Symposium on
Foundations of Computer Science, Chicago, IL, United States, 2024, pp. 62–85.
ista: 'Georgiadis L, Italiano GF, Kosinas E. 2024. Computing the 3-edge-connected
components of directed graphs in linear time. 65th Annual Symposium on Foundations
of Computer Science. FOCS: Foundations of Computer Science, 62–85.'
mla: Georgiadis, Loukas, et al. “Computing the 3-Edge-Connected Components of Directed
Graphs in Linear Time.” 65th Annual Symposium on Foundations of Computer Science,
IEEE, 2024, pp. 62–85, doi:10.1109/focs61266.2024.00015.
short: L. Georgiadis, G.F. Italiano, E. Kosinas, in:, 65th Annual Symposium on Foundations
of Computer Science, IEEE, 2024, pp. 62–85.
conference:
end_date: 2024-10-30
location: Chicago, IL, United States
name: 'FOCS: Foundations of Computer Science'
start_date: 2024-10-27
corr_author: '1'
das_tickbox: '0'
date_created: 2025-01-27T14:50:23Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2026-10-21T08:07:18Z
day: '01'
department:
- _id: MoHe
doi: 10.1109/focs61266.2024.00015
external_id:
isi:
- '001419526400005'
fulldoi: https://doi.org/10.1109/focs61266.2024.00015
isi: 1
language:
- iso: eng
month: '10'
oa_version: None
page: 62-85
publication: 65th Annual Symposium on Foundations of Computer Science
publication_identifier:
isbn:
- '9798331516741'
publication_status: published
publisher: IEEE
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Computing the 3-edge-connected components of directed graphs in linear time
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
_id: '17207'
acknowledgement: "This research was funded by the Austrian Science Fund (FWF), project
doi: 10.55776/P32896, Institutional Identifier: 501100002428, grant number: P32896
and L.F. acknowledges the support of the NOMIS-ISTA Fellowship Program.\r\nWe would
like to thank Nick Barton, Roger Butlin, Stuart Baird, Patrik Nosil, and Jason Sexton
for their insightful comments on the earlier drafts, and to John Carchrae for his
valuable contribution in refining phrasing and enhancing clarity. For open access
purposes, the author has applied a CC BY public copyright license to any author-accepted
manuscript version arising from this submission."
article_processing_charge: No
article_type: letter_note
author:
- first_name: Louise
full_name: Fouqueau, Louise
id: 1676e173-8143-11ed-8927-fe165216a93f
last_name: Fouqueau
orcid: 0000-0003-0371-9339
- first_name: Jitka
full_name: Polechova, Jitka
id: 3BBFB084-F248-11E8-B48F-1D18A9856A87
last_name: Polechova
orcid: 0000-0003-0951-3112
citation:
ama: 'Fouqueau L, Polechova J. Eco-evolutionary dynamics in changing environments:
Integrating theory with data. Journal of evolutionary biology. 2024;37(6):579-587.
doi:10.1093/jeb/voae067'
apa: 'Fouqueau, L., & Polechova, J. (2024). Eco-evolutionary dynamics in changing
environments: Integrating theory with data. Journal of Evolutionary Biology.
Oxford University Press. https://doi.org/10.1093/jeb/voae067'
chicago: 'Fouqueau, Louise, and Jitka Polechova. “Eco-Evolutionary Dynamics in Changing
Environments: Integrating Theory with Data.” Journal of Evolutionary Biology.
Oxford University Press, 2024. https://doi.org/10.1093/jeb/voae067.'
ieee: 'L. Fouqueau and J. Polechova, “Eco-evolutionary dynamics in changing environments:
Integrating theory with data,” Journal of evolutionary biology, vol. 37,
no. 6. Oxford University Press, pp. 579–587, 2024.'
ista: 'Fouqueau L, Polechova J. 2024. Eco-evolutionary dynamics in changing environments:
Integrating theory with data. Journal of evolutionary biology. 37(6), 579–587.'
mla: 'Fouqueau, Louise, and Jitka Polechova. “Eco-Evolutionary Dynamics in Changing
Environments: Integrating Theory with Data.” Journal of Evolutionary Biology,
vol. 37, no. 6, Oxford University Press, 2024, pp. 579–87, doi:10.1093/jeb/voae067.'
short: L. Fouqueau, J. Polechova, Journal of Evolutionary Biology 37 (2024) 579–587.
das_tickbox: '0'
date_created: 2024-07-07T22:01:04Z
date_published: 2024-06-28T00:00:00Z
date_updated: 2026-10-21T08:08:57Z
day: '28'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/jeb/voae067
external_id:
isi:
- '001258359900001'
pmid:
- '38941551'
fulldoi: https://doi.org/10.1093/jeb/voae067
intvolume: ' 37'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/jeb/voae067
month: '06'
oa: 1
oa_version: Published Version
page: 579-587
pmid: 1
project:
- _id: c08d3278-5a5b-11eb-8a69-fdb09b55f4b8
grant_number: P32896
name: Causes and consequences of population fragmentation
- _id: 9B861AAC-BA93-11EA-9121-9846C619BF3A
name: NOMIS Fellowship Program
publication: Journal of evolutionary biology
publication_identifier:
eissn:
- 1420-9101
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: 'Eco-evolutionary dynamics in changing environments: Integrating theory with
data'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 37
year: '2024'
...
---
_id: '17888'
abstract:
- lang: eng
text: "Context: Biotic resource exploitation is a critical determinant of species’
distributions. However, quantifying resource exploitation patterns through space
and time can be difficult, complicating their incorporation in spatial ecology
studies. Therefore, understanding the local drivers of spatial patterns of resource
exploitation may contribute to better large-scale species distribution models.\r\nObjectives:
We investigated (1) how the resource exploitation patterns of two trophic interactions
(plant–insect) are explained by insect behaviour, resource aggregation, and potential
insect-insect interactions. We also analyzed how (2) resource patch size and (3)
resource accessibility in a heterogeneous landscape affected host exploitation
patterns.\r\nMethods: We quantified nectar robbing by insects in the genus Bombus
(bumblebees) and seed predation by Brachypterolus vestitus larvae (Antirrhinum
beetle) on Antirrhinum majus L. (wild snapdragons) in the Pyrenees Mountains,
Catalonia, Spain. We tested hypotheses about resource exploitation by integrating
spatial analyses at multiple scales.\r\nResults: Both trophic interactions were
aggregated, explained by the aggregation of their resource. At some scales, nectar
robbing is more aggregated than the resource. Trophic interaction abundance is
proportional to resource patch size, following the ideal free distribution model.
Landscape features do not explain the locations exploited. Nectar robbing and
seed predation occur together more often than expected.\r\nConclusions: Our findings
suggest that multiple biotic and ecological spatial factors may simultaneously
affect resource exploitation at a local scale. These findings should be considered
when developing agricultural projects, management plans and conservation policies."
acknowledgement: "For the beetle barcoding, we are very thankful to Brent Emerson’s
laboratory at the Consejo Superior de Investigaciones Científicas (CSIC) at the
Instituto de Productos Naturales y Agrobiología (IPNA) in La Laguna, Tenerife. Many
thanks to numerous field assistants, especially Sandra Cuevas Gallego, Beatriz Pablo
Carmona, Luís Santos Cid and Alex Fuster, for their assistance in data collection.
Finally, we thank Jesús Muñoz, Virgilio Gómez-Rubio, and two anonymous reviewers
for comments that greatly improved the quality of the manuscript.\r\nOpen access
funding provided by Institute of Science and Technology (IST Austria). CB received
funding from the European Union’s Horizon 2020 research and innovation programme
under the Marie Skłodowska-Curie Grant Agreement No. 754411. NB was funded by the
FWF grant “Löwenmaul speciation” P 32166-B32."
article_number: '172'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Guillem
full_name: Pocull Belles, Guillem
id: 54359172-700c-11ef-a103-c1d91ceac6d6
last_name: Pocull Belles
- first_name: Carina
full_name: Baskett, Carina
id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
last_name: Baskett
orcid: 0000-0002-7354-8574
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: 'Pocull Belles G, Baskett C, Barton NH. Multiscale spatial analysis of two
plant–insect interactions: Effects of landscape, resource distribution, and other
insects. Landscape Ecology. 2024;39(9). doi:10.1007/s10980-024-01899-9'
apa: 'Pocull Belles, G., Baskett, C., & Barton, N. H. (2024). Multiscale spatial
analysis of two plant–insect interactions: Effects of landscape, resource distribution,
and other insects. Landscape Ecology. Springer Nature. https://doi.org/10.1007/s10980-024-01899-9'
chicago: 'Pocull Belles, Guillem, Carina Baskett, and Nicholas H Barton. “Multiscale
Spatial Analysis of Two Plant–Insect Interactions: Effects of Landscape, Resource
Distribution, and Other Insects.” Landscape Ecology. Springer Nature, 2024.
https://doi.org/10.1007/s10980-024-01899-9.'
ieee: 'G. Pocull Belles, C. Baskett, and N. H. Barton, “Multiscale spatial analysis
of two plant–insect interactions: Effects of landscape, resource distribution,
and other insects,” Landscape Ecology, vol. 39, no. 9. Springer Nature,
2024.'
ista: 'Pocull Belles G, Baskett C, Barton NH. 2024. Multiscale spatial analysis
of two plant–insect interactions: Effects of landscape, resource distribution,
and other insects. Landscape Ecology. 39(9), 172.'
mla: 'Pocull Belles, Guillem, et al. “Multiscale Spatial Analysis of Two Plant–Insect
Interactions: Effects of Landscape, Resource Distribution, and Other Insects.”
Landscape Ecology, vol. 39, no. 9, 172, Springer Nature, 2024, doi:10.1007/s10980-024-01899-9.'
short: G. Pocull Belles, C. Baskett, N.H. Barton, Landscape Ecology 39 (2024).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: The datasets generated and analysed during the current
study will be deposited to the ISTA Research Explorer repository upon manuscript
acceptance. Voucher specimens of insects are deposited in the Museo Nacional de
Ciencias Naturales, Spain.
date_created: 2024-09-08T22:01:11Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2026-10-21T08:12:11Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1007/s10980-024-01899-9
ec_funded: 1
external_id:
isi:
- '001304011900001'
file:
- access_level: open_access
checksum: 2e1cbc320ec1b4447a5a8562a90bcbc3
content_type: application/pdf
creator: dernst
date_created: 2024-09-11T07:14:03Z
date_updated: 2024-09-11T07:14:03Z
file_id: '18054'
file_name: 2024_LandscapeEcology_Pocull.pdf
file_size: 1494987
relation: main_file
success: 1
file_date_updated: 2024-09-11T07:14:03Z
fulldoi: https://doi.org/10.1007/s10980-024-01899-9
has_accepted_license: '1'
intvolume: ' 39'
isi: 1
issue: '9'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 05959E1C-7A3F-11EA-A408-12923DDC885E
grant_number: P32166
name: Snapdragon Speciation
publication: Landscape Ecology
publication_identifier:
eissn:
- 1572-9761
issn:
- 0921-2973
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: 'Multiscale spatial analysis of two plant–insect interactions: Effects of landscape,
resource distribution, and other insects'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 39
year: '2024'
...
---
_id: '14850'
abstract:
- lang: eng
text: Elaborate sexual signals are thought to have evolved and be maintained to
serve as honest indicators of signaller quality. One measure of quality is health,
which can be affected by parasite infection. Cnemaspis mysoriensis is a diurnal
gecko that is often infested with ectoparasites in the wild, and males of this
species express visual (coloured gular patches) and chemical (femoral gland secretions)
traits that receivers could assess during social interactions. In this paper,
we tested whether ectoparasites affect individual health, and whether signal quality
is an indicator of ectoparasite levels. In wild lizards, we found that ectoparasite
level was negatively correlated with body condition in both sexes. Moreover, some
characteristics of both visual and chemical traits in males were strongly associated
with ectoparasite levels. Specifically, males with higher ectoparasite levels
had yellow gular patches with lower brightness and chroma, and chemical secretions
with a lower proportion of aromatic compounds. We then determined whether ectoparasite
levels in males influence female behaviour. Using sequential choice trials, wherein
females were provided with either the visual or the chemical signals of wild-caught
males that varied in ectoparasite level, we found that only chemical secretions
evoked an elevated female response towards less parasitised males. Simultaneous
choice trials in which females were exposed to the chemical secretions from males
that varied in parasite level further confirmed a preference for males with lower
parasites loads. Overall, we find that although health (body condition) or ectoparasite
load can be honestly advertised through multiple modalities, the parasite-mediated
female response is exclusively driven by chemical signals.
acknowledgement: "We thank Anuradha Batabyal and Shakilur Kabir for scientific discussions,
and help with sampling and colour analyses. We thank Muralidhar and the central
LCMS facility of the IISc for their technical support with the GCMS.\r\nResearch
funding was provided by the Department of Science and Technology Fund for Improvement
of S&T Infrastructure (DST-FIST), the Department of Biotechnology-Indian Institute
of Science (DBT-IISc) partnership program and a Science and Engineering Research
Board (SERB) grant to M.T. (EMR/2017/002228). Open Access funding provided by Indian
Institute of Science. Deposited in PMC for immediate release."
article_number: jeb246217
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Arka
full_name: Pal, Arka
id: 6AAB2240-CA9A-11E9-9C1A-D9D1E5697425
last_name: Pal
orcid: 0000-0002-4530-8469
- first_name: Mihir
full_name: Joshi, Mihir
last_name: Joshi
- first_name: Maria
full_name: Thaker, Maria
last_name: Thaker
citation:
ama: Pal A, Joshi M, Thaker M. Too much information? Males convey parasite levels
using more signal modalities than females utilise. Journal of Experimental
Biology. 2024;227(1). doi:10.1242/jeb.246217
apa: Pal, A., Joshi, M., & Thaker, M. (2024). Too much information? Males convey
parasite levels using more signal modalities than females utilise. Journal
of Experimental Biology. The Company of Biologists. https://doi.org/10.1242/jeb.246217
chicago: Pal, Arka, Mihir Joshi, and Maria Thaker. “Too Much Information? Males
Convey Parasite Levels Using More Signal Modalities than Females Utilise.” Journal
of Experimental Biology. The Company of Biologists, 2024. https://doi.org/10.1242/jeb.246217.
ieee: A. Pal, M. Joshi, and M. Thaker, “Too much information? Males convey parasite
levels using more signal modalities than females utilise,” Journal of Experimental
Biology, vol. 227, no. 1. The Company of Biologists, 2024.
ista: Pal A, Joshi M, Thaker M. 2024. Too much information? Males convey parasite
levels using more signal modalities than females utilise. Journal of Experimental
Biology. 227(1), jeb246217.
mla: Pal, Arka, et al. “Too Much Information? Males Convey Parasite Levels Using
More Signal Modalities than Females Utilise.” Journal of Experimental Biology,
vol. 227, no. 1, jeb246217, The Company of Biologists, 2024, doi:10.1242/jeb.246217.
short: A. Pal, M. Joshi, M. Thaker, Journal of Experimental Biology 227 (2024).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: Raw data for this paper are available from Zenodo (doi:10.5281/zenodo.10423540).
All analysis code is available from GitHub (https://github.com/arka-pal/Cnemaspis-SexualSignaling)
date_created: 2024-01-22T08:14:49Z
date_published: 2024-01-10T00:00:00Z
date_updated: 2026-10-21T08:13:07Z
day: '10'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1242/jeb.246217
external_id:
isi:
- '001214515700016'
pmid:
- '38054353'
file:
- access_level: open_access
checksum: 136325372f6f45abaa62a71e2d23bfb6
content_type: application/pdf
creator: dernst
date_created: 2024-01-23T12:08:24Z
date_updated: 2024-01-23T12:08:24Z
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file_name: 2024_JourExperimBiology_Pal.pdf
file_size: 594128
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success: 1
file_date_updated: 2024-01-23T12:08:24Z
fulldoi: https://doi.org/10.1242/jeb.246217
has_accepted_license: '1'
intvolume: ' 227'
isi: 1
issue: '1'
keyword:
- Insect Science
- Molecular Biology
- Animal Science and Zoology
- Aquatic Science
- Physiology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Experimental Biology
publication_identifier:
eissn:
- 0022-0949
issn:
- 1477-9145
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/arka-pal/Cnemaspis-SexualSignaling
record:
- id: '22868'
relation: research_data
status: public
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Too much information? Males convey parasite levels using more signal modalities
than females utilise
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 227
year: '2024'
...
---
_id: '15358'
abstract:
- lang: eng
text: 'We consider how a population of N haploid individuals responds to directional
selection on standing variation, with no new variation from recombination or mutation.
Individuals have trait values z1,…,zN, which are drawn from a distribution ψ;
the fitness of individual i is proportional to [Formula: see text] . For illustration,
we consider the Laplace and Gaussian distributions, which are parametrised only
by the variance V0, and show that for large N, there is a scaling limit which
depends on a single parameter NV0. When selection is weak relative to drift (NV0≪1),
the variance decreases exponentially at rate 1/N, and the expected ultimate gain
in log fitness (scaled by V0), is just NV0, which is the same as Robertson''s
(1960) prediction for a sexual population. In contrast, when selection is strong
relative to drift (NV0≫1), the ultimate gain can be found by approximating the
establishment of alleles by a branching process in which each allele competes
independently with the population mean and the fittest allele to establish is
certain to fix. Then, if the probability of survival to time t∼1/V0 of an allele
with value z is P(z), with mean P¯, the winning allele is the fittest of NP¯ survivors
drawn from a distribution ψP/P¯. The expected ultimate change is ∼2log(1.15NV0)
for a Gaussian distribution, and ∼-12log0.36NV0-log-log0.36NV0 for a Laplace distribution.
This approach also predicts the variability of the process, and its dynamics;
we show that in the strong selection regime, the expected genetic variance decreases
as ∼t-3 at large times. We discuss how these results may be related to selection
on standing variation that is spread along a linear chromosome.'
acknowledgement: We thank Emmanuel Schertzer and two reviewers for comments on this
manuscript. NB thanks the European Research Council for support via the grant “HaplotypeStructure”
101055327. We would also like to give our sincere thanks to Alison Etheridge for
her insight, inspiration and support over the years.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Himani
full_name: Sachdeva, Himani
id: 42377A0A-F248-11E8-B48F-1D18A9856A87
last_name: Sachdeva
citation:
ama: Barton NH, Sachdeva H. Limits to selection on standing variation in an asexual
population. Theoretical Population Biology. 2024;157:129-137. doi:10.1016/j.tpb.2024.04.001
apa: Barton, N. H., & Sachdeva, H. (2024). Limits to selection on standing variation
in an asexual population. Theoretical Population Biology. Elsevier. https://doi.org/10.1016/j.tpb.2024.04.001
chicago: Barton, Nicholas H, and Himani Sachdeva. “Limits to Selection on Standing
Variation in an Asexual Population.” Theoretical Population Biology. Elsevier,
2024. https://doi.org/10.1016/j.tpb.2024.04.001.
ieee: N. H. Barton and H. Sachdeva, “Limits to selection on standing variation in
an asexual population,” Theoretical Population Biology, vol. 157. Elsevier,
pp. 129–137, 2024.
ista: Barton NH, Sachdeva H. 2024. Limits to selection on standing variation in
an asexual population. Theoretical Population Biology. 157, 129–137.
mla: Barton, Nicholas H., and Himani Sachdeva. “Limits to Selection on Standing
Variation in an Asexual Population.” Theoretical Population Biology, vol.
157, Elsevier, 2024, pp. 129–37, doi:10.1016/j.tpb.2024.04.001.
short: N.H. Barton, H. Sachdeva, Theoretical Population Biology 157 (2024) 129–137.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: Selection_SGV_Asexual (Original data) (GitHub).
date_created: 2024-05-05T22:01:03Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2026-10-21T08:14:58Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1016/j.tpb.2024.04.001
external_id:
isi:
- '001237016800001'
pmid:
- '38643838'
file:
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creator: dernst
date_created: 2024-05-13T08:22:21Z
date_updated: 2024-05-13T08:22:21Z
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file_size: 1098292
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success: 1
file_date_updated: 2024-05-13T08:22:21Z
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has_accepted_license: '1'
intvolume: ' 157'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 129-137
pmid: 1
project:
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
grant_number: '101055327'
name: Understanding the evolution of continuous genomes
publication: Theoretical Population Biology
publication_identifier:
eissn:
- 1096-0325
issn:
- 0040-5809
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Limits to selection on standing variation in an asexual population
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 157
year: '2024'
...
---
_id: '15099'
abstract:
- lang: eng
text: Speciation is a key evolutionary process that is not yet fully understood.
Combining population genomic and ecological data from multiple diverging pairs
of marine snails (Littorina) supports the search for speciation mechanisms. Placing
pairs on a one-dimensional speciation continuum, from undifferentiated populations
to species, obscured the complexity of speciation. Adding multiple axes helped
to describe either speciation routes or reproductive isolation in the snails.
Divergent ecological selection repeatedly generated barriers between ecotypes,
but appeared less important in completing speciation while genetic incompatibilities
played a key role. Chromosomal inversions contributed to genomic barriers, but
with variable impact. A multidimensional (hypercube) approach supported framing
of questions and identification of knowledge gaps and can be useful to understand
speciation in many other systems.
acknowledgement: KJ, MR, and RKB were supported by grants from the Swedish Research
Council (2021-0419, 2021-05243, and 2018-03695, respectively). RKB was also supported
by the Leverhulme Trust (RPG-2021-141), RF by FCT- Portuguese Science Foundation
(PTDC/BIA-EVL/1614/2021 and 2020.00275.CEECIND), and AMW by Norwegian Research Council
RCN (Project number 315287). We thank the members of the Integration of Speciation
Research network for stimulating discussions, the Littorina research community for
important contributions of data and analyses, and Cynthia Riginos for useful comments
on an earlier draft.
article_processing_charge: Yes (in subscription journal)
article_type: review
author:
- first_name: Kerstin
full_name: Johannesson, Kerstin
last_name: Johannesson
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
- first_name: Alan
full_name: Le Moan, Alan
last_name: Le Moan
- first_name: Marina
full_name: Rafajlović, Marina
last_name: Rafajlović
- first_name: Anja M
full_name: Westram, Anja M
id: 3C147470-F248-11E8-B48F-1D18A9856A87
last_name: Westram
orcid: 0000-0003-1050-4969
- first_name: Roger K.
full_name: Butlin, Roger K.
last_name: Butlin
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
citation:
ama: Johannesson K, Faria R, Le Moan A, et al. Diverse pathways to speciation revealed
by marine snails. Trends in Genetics. 2024;40(4):337-351. doi:10.1016/j.tig.2024.01.002
apa: Johannesson, K., Faria, R., Le Moan, A., Rafajlović, M., Westram, A. M., Butlin,
R. K., & Stankowski, S. (2024). Diverse pathways to speciation revealed by
marine snails. Trends in Genetics. Elsevier. https://doi.org/10.1016/j.tig.2024.01.002
chicago: Johannesson, Kerstin, Rui Faria, Alan Le Moan, Marina Rafajlović, Anja
M Westram, Roger K. Butlin, and Sean Stankowski. “Diverse Pathways to Speciation
Revealed by Marine Snails.” Trends in Genetics. Elsevier, 2024. https://doi.org/10.1016/j.tig.2024.01.002.
ieee: K. Johannesson et al., “Diverse pathways to speciation revealed by
marine snails,” Trends in Genetics, vol. 40, no. 4. Elsevier, pp. 337–351,
2024.
ista: Johannesson K, Faria R, Le Moan A, Rafajlović M, Westram AM, Butlin RK, Stankowski
S. 2024. Diverse pathways to speciation revealed by marine snails. Trends in Genetics.
40(4), 337–351.
mla: Johannesson, Kerstin, et al. “Diverse Pathways to Speciation Revealed by Marine
Snails.” Trends in Genetics, vol. 40, no. 4, Elsevier, 2024, pp. 337–51,
doi:10.1016/j.tig.2024.01.002.
short: K. Johannesson, R. Faria, A. Le Moan, M. Rafajlović, A.M. Westram, R.K. Butlin,
S. Stankowski, Trends in Genetics 40 (2024) 337–351.
das_tickbox: '0'
date_created: 2024-03-10T23:00:54Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2026-10-21T08:13:54Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1016/j.tig.2024.01.002
external_id:
isi:
- '001224671300001'
pmid:
- '38395682'
file:
- access_level: open_access
checksum: 3077ea808c4cdc24d02dc58aced7eb35
content_type: application/pdf
creator: dernst
date_created: 2024-07-22T12:05:58Z
date_updated: 2024-07-22T12:05:58Z
file_id: '17313'
file_name: 2024_TrendsGenetics_Johannesson.pdf
file_size: 2288340
relation: main_file
success: 1
file_date_updated: 2024-07-22T12:05:58Z
fulldoi: https://doi.org/10.1016/j.tig.2024.01.002
has_accepted_license: '1'
intvolume: ' 40'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 337-351
pmid: 1
publication: Trends in Genetics
publication_identifier:
eissn:
- 1362-4555
issn:
- 0168-9525
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Diverse pathways to speciation revealed by marine snails
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 40
year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '18949'
abstract:
- lang: eng
text: 'Speciation research—the scientific field focused on understanding the origin
and diversity of species—has a long and complex history. While relevant to one
another, the specific goals and activities of speciation researchers are highly
diverse, and scattered across a collection of different perspectives. Thus, our
understanding of speciation will benefit from efforts to bridge scientific findings
and the diverse people who do the work. In this paper, we outline two ways of
integrating speciation research: (i) scientific integration, through the bringing
together of ideas, data, and approaches; and (ii) social integration, by creating
ways for a diversity of researchers to participate in the scientific process.
We then discuss five challenges to integration: (i) the multidisciplinary nature
of speciation research, (ii) the complex language of speciation; (iii) a bias
toward certain study systems; (iv) the challenges of working across scales; and
(v) inconsistent measures and reporting standards. We provide practical steps
that individuals and groups can take to help overcome these challenges, and argue
that integration is a team effort in which we all have a role to play.'
acknowledgement: "We thank the staff of the Tvärminne Zoological Station (University
of Helsinki) for their hospitality during the workshop. We are also grateful to
everyone who applied to attend the workshop.\r\nFunding for the workshop was provided
by the European Society for Evolutionary Biology through the Special Topic Network
(STN) funding scheme."
article_number: kzae001
article_processing_charge: Yes
article_type: original
author:
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
- first_name: Asher D
full_name: Cutter, Asher D
last_name: Cutter
- first_name: Ina
full_name: Satokangas, Ina
last_name: Satokangas
- first_name: Brian A
full_name: Lerch, Brian A
last_name: Lerch
- first_name: Jonathan
full_name: Rolland, Jonathan
last_name: Rolland
- first_name: Carole M
full_name: Smadja, Carole M
last_name: Smadja
- first_name: J Carolina
full_name: Segami Marzal, J Carolina
last_name: Segami Marzal
- first_name: Christopher R
full_name: Cooney, Christopher R
last_name: Cooney
- first_name: Philine G D
full_name: Feulner, Philine G D
last_name: Feulner
- first_name: Fabricius Maia Chaves Bicalho
full_name: Domingos, Fabricius Maia Chaves Bicalho
last_name: Domingos
- first_name: Henry L
full_name: North, Henry L
last_name: North
- first_name: Ryo
full_name: Yamaguchi, Ryo
last_name: Yamaguchi
- first_name: Roger K
full_name: Butlin, Roger K
last_name: Butlin
- first_name: Jochen B W
full_name: Wolf, Jochen B W
last_name: Wolf
- first_name: Jenn
full_name: Coughlan, Jenn
last_name: Coughlan
- first_name: Patrick
full_name: Heidbreder, Patrick
last_name: Heidbreder
- first_name: Rebeca
full_name: Hernández-Gutiérrez, Rebeca
last_name: Hernández-Gutiérrez
- first_name: Karen B
full_name: Barnard-Kubow, Karen B
last_name: Barnard-Kubow
- first_name: David
full_name: Peede, David
last_name: Peede
- first_name: Loïs
full_name: Rancilhac, Loïs
last_name: Rancilhac
- first_name: Rodrigo Brincalepe
full_name: Salvador, Rodrigo Brincalepe
last_name: Salvador
- first_name: Ken A
full_name: Thompson, Ken A
last_name: Thompson
- first_name: Elizabeth A
full_name: Stacy, Elizabeth A
last_name: Stacy
- first_name: Leonie C
full_name: Moyle, Leonie C
last_name: Moyle
- first_name: Martin D
full_name: Garlovsky, Martin D
last_name: Garlovsky
- first_name: Arif
full_name: Maulana, Arif
last_name: Maulana
- first_name: Annina
full_name: Kantelinen, Annina
last_name: Kantelinen
- first_name: N Ivalú
full_name: Cacho, N Ivalú
last_name: Cacho
- first_name: Hilde
full_name: Schneemann, Hilde
last_name: Schneemann
- first_name: Marisol
full_name: Domínguez, Marisol
last_name: Domínguez
- first_name: Erik B
full_name: Dopman, Erik B
last_name: Dopman
- first_name: Konrad
full_name: Lohse, Konrad
last_name: Lohse
- first_name: Sina J
full_name: Rometsch, Sina J
last_name: Rometsch
- first_name: Aaron A
full_name: Comeault, Aaron A
last_name: Comeault
- first_name: Richard M
full_name: Merrill, Richard M
last_name: Merrill
- first_name: Elizabeth S C
full_name: Scordato, Elizabeth S C
last_name: Scordato
- first_name: Sonal
full_name: Singhal, Sonal
last_name: Singhal
- first_name: Varpu
full_name: Pärssinen, Varpu
last_name: Pärssinen
- first_name: Alycia C R
full_name: Lackey, Alycia C R
last_name: Lackey
- first_name: Sanghamitra
full_name: Kumar, Sanghamitra
last_name: Kumar
- first_name: Joana I
full_name: Meier, Joana I
last_name: Meier
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Christelle
full_name: Fraisse, Christelle
id: 32DF5794-F248-11E8-B48F-1D18A9856A87
last_name: Fraisse
orcid: 0000-0001-8441-5075
- first_name: Mark
full_name: Ravinet, Mark
last_name: Ravinet
- first_name: Jonna
full_name: Kulmuni, Jonna
last_name: Kulmuni
citation:
ama: Stankowski S, Cutter AD, Satokangas I, et al. Toward the integration of speciation
research. Evolutionary Journal of the Linnean Society. 2024;3(1). doi:10.1093/evolinnean/kzae001
apa: Stankowski, S., Cutter, A. D., Satokangas, I., Lerch, B. A., Rolland, J., Smadja,
C. M., … Kulmuni, J. (2024). Toward the integration of speciation research. Evolutionary
Journal of the Linnean Society. Oxford University Press. https://doi.org/10.1093/evolinnean/kzae001
chicago: Stankowski, Sean, Asher D Cutter, Ina Satokangas, Brian A Lerch, Jonathan
Rolland, Carole M Smadja, J Carolina Segami Marzal, et al. “Toward the Integration
of Speciation Research.” Evolutionary Journal of the Linnean Society. Oxford
University Press, 2024. https://doi.org/10.1093/evolinnean/kzae001.
ieee: S. Stankowski et al., “Toward the integration of speciation research,”
Evolutionary Journal of the Linnean Society, vol. 3, no. 1. Oxford University
Press, 2024.
ista: Stankowski S, Cutter AD, Satokangas I, Lerch BA, Rolland J, Smadja CM, Segami
Marzal JC, Cooney CR, Feulner PGD, Domingos FMCB, North HL, Yamaguchi R, Butlin
RK, Wolf JBW, Coughlan J, Heidbreder P, Hernández-Gutiérrez R, Barnard-Kubow KB,
Peede D, Rancilhac L, Salvador RB, Thompson KA, Stacy EA, Moyle LC, Garlovsky
MD, Maulana A, Kantelinen A, Cacho NI, Schneemann H, Domínguez M, Dopman EB, Lohse
K, Rometsch SJ, Comeault AA, Merrill RM, Scordato ESC, Singhal S, Pärssinen V,
Lackey ACR, Kumar S, Meier JI, Barton NH, Fraisse C, Ravinet M, Kulmuni J. 2024.
Toward the integration of speciation research. Evolutionary Journal of the Linnean
Society. 3(1), kzae001.
mla: Stankowski, Sean, et al. “Toward the Integration of Speciation Research.” Evolutionary
Journal of the Linnean Society, vol. 3, no. 1, kzae001, Oxford University
Press, 2024, doi:10.1093/evolinnean/kzae001.
short: S. Stankowski, A.D. Cutter, I. Satokangas, B.A. Lerch, J. Rolland, C.M. Smadja,
J.C. Segami Marzal, C.R. Cooney, P.G.D. Feulner, F.M.C.B. Domingos, H.L. North,
R. Yamaguchi, R.K. Butlin, J.B.W. Wolf, J. Coughlan, P. Heidbreder, R. Hernández-Gutiérrez,
K.B. Barnard-Kubow, D. Peede, L. Rancilhac, R.B. Salvador, K.A. Thompson, E.A.
Stacy, L.C. Moyle, M.D. Garlovsky, A. Maulana, A. Kantelinen, N.I. Cacho, H. Schneemann,
M. Domínguez, E.B. Dopman, K. Lohse, S.J. Rometsch, A.A. Comeault, R.M. Merrill,
E.S.C. Scordato, S. Singhal, V. Pärssinen, A.C.R. Lackey, S. Kumar, J.I. Meier,
N.H. Barton, C. Fraisse, M. Ravinet, J. Kulmuni, Evolutionary Journal of the Linnean
Society 3 (2024).
corr_author: '1'
das_tickbox: '0'
date_created: 2025-01-29T10:38:17Z
date_published: 2024-02-16T00:00:00Z
date_updated: 2026-10-21T08:21:06Z
day: '16'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/evolinnean/kzae001
file:
- access_level: open_access
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date_created: 2025-01-29T10:52:40Z
date_updated: 2025-01-29T10:52:40Z
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file_name: 2024_EvolJourLinneanSoc_Stankowski.pdf
file_size: 3935454
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file_date_updated: 2025-01-29T10:52:40Z
fulldoi: https://doi.org/10.1093/evolinnean/kzae001
has_accepted_license: '1'
intvolume: ' 3'
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
publication: Evolutionary Journal of the Linnean Society
publication_identifier:
issn:
- 2752-938X
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Toward the integration of speciation research
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
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...
---
OA_place: publisher
OA_type: gold
_id: '18908'
abstract:
- lang: eng
text: Chromosomal rearrangements can lead to the coupling of reproductive barriers,
but whether and how they contribute to the completion of speciation remains unclear.
Marine snails of the genus Littorina repeatedly form hybrid zones between populations
segregating for multiple inversion arrangements, providing opportunities to study
their barrier effects. Here, we analyzed 2 adjacent transects across hybrid zones
between 2 ecotypes of Littorina fabalis (“large” and “dwarf”) adapted to different
wave exposure conditions on a Swedish island. Applying whole-genome sequencing,
we found 12 putative inversions on 9 of 17 chromosomes. Nine of the putative inversions
reached near differential fixation between the 2 ecotypes, and all were in strong
linkage disequilibrium. These inversions cover 20% of the genome and carry 93%
of divergent single nucleotide polymorphisms (SNPs). Bimodal hybrid zones in both
transects indicated that the 2 ecotypes of Littorina fabalis maintain their genetic
and phenotypic integrity following contact. The bimodality reflects the strong
coupling between inversion clines and the extension of the barrier effect across
the whole genome. Demographic inference suggests that coupling arose during a
period of allopatry and has been maintained for > 1,000 generations after
secondary contact. Overall, this study shows that the coupling of multiple chromosomal
inversions contributes to strong reproductive isolation. Notably, 2 of the putative
inversions overlap with inverted genomic regions associated with ecotype differences
in a closely related species (Littorina saxatilis), suggesting the same regions,
with similar structural variants, repeatedly contribute to ecotype evolution in
distinct species.
acknowledgement: The computations and data handling were enabled by resources provided
by the Swedish National Infrastructure for Computing at UPPMAX partially funded
by the Swedish Research Council through grant agreement no. 2018-05973. We thank
all the member of the Littorina team for the stimulating discussions about the manuscripts,
James Reeves for his help the implementation of Hsplit, and Thomas Broquet for his
useful comments in the latter stage of manuscript revisions.
article_processing_charge: Yes
article_type: letter_note
author:
- first_name: Alan
full_name: Le Moan, Alan
last_name: Le Moan
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
- first_name: Marina
full_name: Rafajlović, Marina
last_name: Rafajlović
- first_name: Olga
full_name: Ortega-Martinez, Olga
last_name: Ortega-Martinez
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
- first_name: Roger K
full_name: Butlin, Roger K
last_name: Butlin
- first_name: Kerstin
full_name: Johannesson, Kerstin
last_name: Johannesson
citation:
ama: Le Moan A, Stankowski S, Rafajlović M, et al. Coupling of twelve putative chromosomal
inversions maintains a strong barrier to gene flow between snail ecotypes. Evolution
Letters. 2024;8(4):575-586. doi:10.1093/evlett/qrae014
apa: Le Moan, A., Stankowski, S., Rafajlović, M., Ortega-Martinez, O., Faria, R.,
Butlin, R. K., & Johannesson, K. (2024). Coupling of twelve putative chromosomal
inversions maintains a strong barrier to gene flow between snail ecotypes. Evolution
Letters. Oxford University Press. https://doi.org/10.1093/evlett/qrae014
chicago: Le Moan, Alan, Sean Stankowski, Marina Rafajlović, Olga Ortega-Martinez,
Rui Faria, Roger K Butlin, and Kerstin Johannesson. “Coupling of Twelve Putative
Chromosomal Inversions Maintains a Strong Barrier to Gene Flow between Snail Ecotypes.”
Evolution Letters. Oxford University Press, 2024. https://doi.org/10.1093/evlett/qrae014.
ieee: A. Le Moan et al., “Coupling of twelve putative chromosomal inversions
maintains a strong barrier to gene flow between snail ecotypes,” Evolution
Letters, vol. 8, no. 4. Oxford University Press, pp. 575–586, 2024.
ista: Le Moan A, Stankowski S, Rafajlović M, Ortega-Martinez O, Faria R, Butlin
RK, Johannesson K. 2024. Coupling of twelve putative chromosomal inversions maintains
a strong barrier to gene flow between snail ecotypes. Evolution Letters. 8(4),
575–586.
mla: Le Moan, Alan, et al. “Coupling of Twelve Putative Chromosomal Inversions Maintains
a Strong Barrier to Gene Flow between Snail Ecotypes.” Evolution Letters,
vol. 8, no. 4, Oxford University Press, 2024, pp. 575–86, doi:10.1093/evlett/qrae014.
short: A. Le Moan, S. Stankowski, M. Rafajlović, O. Ortega-Martinez, R. Faria, R.K.
Butlin, K. Johannesson, Evolution Letters 8 (2024) 575–586.
das_tickbox: '1'
dataavailabilitystatement: 'The raw fasta files are available on NCBI SRA under the
project name “Littorina fabalis transect WGS” with accession number PRJNA836378.
The filtered vcf file, metadata, as well as the R scripts used to analyse these
datasets, are available as a zenodo archive here: doi: 10.5281/zenodo.10790257.'
date_created: 2025-01-27T13:30:27Z
date_published: 2024-04-23T00:00:00Z
date_updated: 2026-10-21T08:20:21Z
day: '23'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/evlett/qrae014
external_id:
isi:
- '001206532900001'
pmid:
- '39479507'
file:
- access_level: open_access
checksum: 2f7780b7b6b3489755f1815f476639c6
content_type: application/pdf
creator: dernst
date_created: 2025-01-27T13:33:14Z
date_updated: 2025-01-27T13:33:14Z
file_id: '18909'
file_name: 2024_EvolutionLetter_Moan.pdf
file_size: 24356661
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file_date_updated: 2025-01-27T13:33:14Z
fulldoi: https://doi.org/10.1093/evlett/qrae014
has_accepted_license: '1'
intvolume: ' 8'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 575-586
pmid: 1
publication: Evolution Letters
publication_identifier:
issn:
- 2056-3744
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
record:
- id: '22870'
relation: research_data
status: public
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Coupling of twelve putative chromosomal inversions maintains a strong barrier
to gene flow between snail ecotypes
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2024'
...
---
APC_amount: 4569,23 EUR
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '18491'
abstract:
- lang: eng
text: Predicting the outcomes of adaptation is a major goal of evolutionary biology.
When temporal changes in the environment mirror spatial gradients, it opens up
the potential for predicting the course of adaptive evolution over time based
on patterns of spatial genetic and phenotypic variation. We assessed this approach
in a 30-year transplant experiment in the intertidal snail Littorina saxatilis.
In 1992, snails were transplanted from a predation-dominated environment to one
dominated by wave action. On the basis of spatial patterns, we predicted transitions
in shell size and morphology, allele frequencies at positions throughout the genome,
and chromosomal rearrangement frequencies. Observed changes closely agreed with
predictions and transformation was both dramatic and rapid. Hence, adaptation
can be predicted from knowledge of the phenotypic and genetic variation among
populations.
acknowledgement: 'This work was received funding from the following: Norwegian Research
Council RCN project 315287 (A.M.W.), Swedish Research Council 2021-04191 (K.J.),
European Research Council grant 101055327 HaplotypeStructure (N.B.), Austrian Science
Fund FWF; P 32166-B32 Snapdragon Speciation (N.B.), European Research Council (R.B.),
and Portuguese Foundation for Science and Technology FCT: 2020.00275.CEECIND and
PTDC/BIA-EVL/1614/2021 (R.F.).'
article_number: eadp2102
article_processing_charge: Yes
article_type: original
author:
- first_name: Diego Fernando
full_name: Garcia Castillo, Diego Fernando
id: ae681a14-dc74-11ea-a0a7-c6ef18161701
last_name: Garcia Castillo
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
- first_name: Jenny
full_name: Larsson, Jenny
last_name: Larsson
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
- first_name: Roger
full_name: Butlin, Roger
last_name: Butlin
- first_name: Kerstin
full_name: Johannesson, Kerstin
last_name: Johannesson
- first_name: Anja M
full_name: Westram, Anja M
id: 3C147470-F248-11E8-B48F-1D18A9856A87
last_name: Westram
orcid: 0000-0003-1050-4969
citation:
ama: 'Garcia Castillo DF, Barton NH, Faria R, et al. Predicting rapid adaptation
in time from adaptation in space: A 30-year field experiment in marine snails.
Science Advances. 2024;10(41). doi:10.1126/sciadv.adp2102'
apa: 'Garcia Castillo, D. F., Barton, N. H., Faria, R., Larsson, J., Stankowski,
S., Butlin, R., … Westram, A. M. (2024). Predicting rapid adaptation in time from
adaptation in space: A 30-year field experiment in marine snails. Science Advances.
AAAS. https://doi.org/10.1126/sciadv.adp2102'
chicago: 'Garcia Castillo, Diego Fernando, Nicholas H Barton, Rui Faria, Jenny Larsson,
Sean Stankowski, Roger Butlin, Kerstin Johannesson, and Anja M Westram. “Predicting
Rapid Adaptation in Time from Adaptation in Space: A 30-Year Field Experiment
in Marine Snails.” Science Advances. AAAS, 2024. https://doi.org/10.1126/sciadv.adp2102.'
ieee: 'D. F. Garcia Castillo et al., “Predicting rapid adaptation in time
from adaptation in space: A 30-year field experiment in marine snails,” Science
Advances, vol. 10, no. 41. AAAS, 2024.'
ista: 'Garcia Castillo DF, Barton NH, Faria R, Larsson J, Stankowski S, Butlin R,
Johannesson K, Westram AM. 2024. Predicting rapid adaptation in time from adaptation
in space: A 30-year field experiment in marine snails. Science Advances. 10(41),
eadp2102.'
mla: 'Garcia Castillo, Diego Fernando, et al. “Predicting Rapid Adaptation in Time
from Adaptation in Space: A 30-Year Field Experiment in Marine Snails.” Science
Advances, vol. 10, no. 41, eadp2102, AAAS, 2024, doi:10.1126/sciadv.adp2102.'
short: D.F. Garcia Castillo, N.H. Barton, R. Faria, J. Larsson, S. Stankowski, R.
Butlin, K. Johannesson, A.M. Westram, Science Advances 10 (2024).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: All analysis scripts and data needed to evaluate the conclusions
of the paper are present in the paper and/or the Supplementary Materials and have
been archived on Zenodo (63) at https://zenodo.org/doi/10.5281/zenodo.12159343 and
are available on Github at https://github.com/fernandoGarcia21/littorina_saxatilis_skerry.
date_created: 2024-11-03T23:01:44Z
date_published: 2024-10-11T00:00:00Z
date_updated: 2026-10-21T08:18:22Z
day: '11'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1126/sciadv.adp2102
external_id:
isi:
- '001354405400018'
file:
- access_level: open_access
checksum: 96aa0d3640fa9401975138e59054f84e
content_type: application/pdf
creator: dernst
date_created: 2024-11-04T09:35:49Z
date_updated: 2024-11-04T09:35:49Z
file_id: '18499'
file_name: 2024_ScienceAdv_Castillo.pdf
file_size: 1154107
relation: main_file
success: 1
file_date_updated: 2024-11-04T09:35:49Z
fulldoi: https://doi.org/10.1126/sciadv.adp2102
has_accepted_license: '1'
intvolume: ' 10'
isi: 1
issue: '41'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
grant_number: '101055327'
name: Understanding the evolution of continuous genomes
- _id: 05959E1C-7A3F-11EA-A408-12923DDC885E
grant_number: P32166
name: Snapdragon Speciation
- _id: 3AC91DDA-15DF-11EA-824D-93A3E7B544D1
call_identifier: FWF
name: FWF Open Access Fund
publication: Science Advances
publication_identifier:
eissn:
- 2375-2548
publication_status: published
publisher: AAAS
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/fernandoGarcia21/littorina_saxatilis_skerry
record:
- id: '18498'
relation: research_data
status: public
- id: '20991'
relation: dissertation_contains
status: public
researchdata_availability: yes (supplementary data)
scopus_import: '1'
status: public
supplementarymaterial: yes
title: 'Predicting rapid adaptation in time from adaptation in space: A 30-year field
experiment in marine snails'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 10
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14463'
abstract:
- lang: eng
text: Inversions are thought to play a key role in adaptation and speciation, suppressing
recombination between diverging populations. Genes influencing adaptive traits
cluster in inversions, and changes in inversion frequencies are associated with
environmental differences. However, in many organisms, it is unclear if inversions
are geographically and taxonomically widespread. The intertidal snail, Littorina
saxatilis, is one such example. Strong associations between putative polymorphic
inversions and phenotypic differences have been demonstrated between two ecotypes
of L. saxatilis in Sweden and inferred elsewhere, but no direct evidence for inversion
polymorphism currently exists across the species range. Using whole genome data
from 107 snails, most inversion polymorphisms were found to be widespread across
the species range. The frequencies of some inversion arrangements were significantly
different among ecotypes, suggesting a parallel adaptive role. Many inversions
were also polymorphic in the sister species, L. arcana, hinting at an ancient
origin.
acknowledgement: We would like to thank members of the Littorina team for their advice
and feedback during this project. In particular, we thank Alan Le Moan, who inspired
us to look at heterozygosity differences to identify inversions, and Katherine Hearn
for helping with the PCA scripts. We thank Edinburgh Genomics for library preparation
and sequencing. Sample collections, sequencing and data preparation were supported
by the European Research Council (ERC-2015-AdG-693030- BARRIERS) and the Natural
Environment Research Council (NE/P001610/1). The analysis was supported by the Swedish
Research Council (vetenskaprådet; 2018-03695_VR) and the Portuguese Foundation for
Science and Technology (Fundación para a Ciência e Tecnologia) through a research
project (PTDC/BIA-EVL/1614/2021) and CEEC contract (2020.00275.CEECIND).
article_number: e17160
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: James
full_name: Reeve, James
last_name: Reeve
- first_name: Roger K.
full_name: Butlin, Roger K.
last_name: Butlin
- first_name: Eva L.
full_name: Koch, Eva L.
last_name: Koch
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
citation:
ama: Reeve J, Butlin RK, Koch EL, Stankowski S, Faria R. Chromosomal inversion polymorphisms
are widespread across the species ranges of rough periwinkles (Littorina saxatilis
and L. arcana). Molecular Ecology. 2024;33(24). doi:10.1111/mec.17160
apa: Reeve, J., Butlin, R. K., Koch, E. L., Stankowski, S., & Faria, R. (2024).
Chromosomal inversion polymorphisms are widespread across the species ranges of
rough periwinkles (Littorina saxatilis and L. arcana). Molecular Ecology.
Wiley. https://doi.org/10.1111/mec.17160
chicago: Reeve, James, Roger K. Butlin, Eva L. Koch, Sean Stankowski, and Rui Faria.
“Chromosomal Inversion Polymorphisms Are Widespread across the Species Ranges
of Rough Periwinkles (Littorina Saxatilis and L. Arcana).” Molecular Ecology.
Wiley, 2024. https://doi.org/10.1111/mec.17160.
ieee: J. Reeve, R. K. Butlin, E. L. Koch, S. Stankowski, and R. Faria, “Chromosomal
inversion polymorphisms are widespread across the species ranges of rough periwinkles
(Littorina saxatilis and L. arcana),” Molecular Ecology, vol. 33, no. 24.
Wiley, 2024.
ista: Reeve J, Butlin RK, Koch EL, Stankowski S, Faria R. 2024. Chromosomal inversion
polymorphisms are widespread across the species ranges of rough periwinkles (Littorina
saxatilis and L. arcana). Molecular Ecology. 33(24), e17160.
mla: Reeve, James, et al. “Chromosomal Inversion Polymorphisms Are Widespread across
the Species Ranges of Rough Periwinkles (Littorina Saxatilis and L. Arcana).”
Molecular Ecology, vol. 33, no. 24, e17160, Wiley, 2024, doi:10.1111/mec.17160.
short: J. Reeve, R.K. Butlin, E.L. Koch, S. Stankowski, R. Faria, Molecular Ecology
33 (2024).
das_tickbox: '1'
dataavailabilitystatement: All raw sequence data were uploaded to the NCBI short read
archive (PRJNA626520). All scripts used for this project are uploaded to GitHub
(https://github.com/ja-Reeve/Littorina_inversion_identification.git).
date_created: 2023-10-29T23:01:17Z
date_published: 2024-12-01T00:00:00Z
date_updated: 2026-10-21T08:19:22Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/mec.17160
external_id:
isi:
- '001085119000001'
pmid:
- '37843465'
file:
- access_level: open_access
checksum: 686576036663f489c2d079df3079d126
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T07:52:12Z
date_updated: 2025-01-09T07:52:12Z
file_id: '18785'
file_name: 2024_MolecularEcology_Reeve.pdf
file_size: 6228700
relation: main_file
success: 1
file_date_updated: 2025-01-09T07:52:12Z
fulldoi: https://doi.org/10.1111/mec.17160
has_accepted_license: '1'
intvolume: ' 33'
isi: 1
issue: '24'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Molecular Ecology
publication_identifier:
eissn:
- 1365-294X
issn:
- 0962-1083
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Chromosomal inversion polymorphisms are widespread across the species ranges
of rough periwinkles (Littorina saxatilis and L. arcana)
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 33
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '18944'
abstract:
- lang: eng
text: 'Understanding connectivity patterns exhibited by endangered species living
in fragmented habitats is fundamental to improving management and conservation
actions. Such improvements can be particularly pressing at the trailing edges
of these habitats, where populations are facing the greatest challenges from climate
change, and appear even more crucial if the species is commercially harvested.
Seascape genetics have been increasingly used to meet these needs. In this study,
we examined connectivity patterns among 32 populations of the oarweed kelp Laminaria
digitata located at the species’ southern range limit. The distance
(or sampling gap) between neighboring populations ranged from a few km to a few
100s of km. By genotyping 11 microsatellite markers, we aimed to (1) refine analyses
of population structure; (2) test whether on-shelf islands are genetically more
differentiated than mainland populations; (3) evaluate the relative importance
of various abiotic conditions in shaping the genetic structure; and (4) evaluate
if the relative importance of each environmental factor varied according to sampling
schemes. Our analyses revealed a positive relationship between connectivity links
and genetic diversity: populations with high levels of connectivity were genetically
enriched while isolated populations showed signs of genetic erosion. The genetically
impoverished populations corresponded to the southernmost populations as well
as populations along the northern coast of Brittany (Locquirec, Saint-Malo Bay)
and the northernmost population in Pas-de-Calais. By performing distance-based
redundancy analysis on various sampling schemes, geographic distance appeared
as the dominant factor influencing connectivity between populations separated
by great distances, while hydrodynamic processes were the main factor when analyzing
at a final spatial resolution.'
article_processing_charge: No
article_type: original
author:
- first_name: Louise
full_name: Fouqueau, Louise
id: 1676e173-8143-11ed-8927-fe165216a93f
last_name: Fouqueau
orcid: 0000-0003-0371-9339
- first_name: L
full_name: Reynes, L
last_name: Reynes
- first_name: F
full_name: Tempera, F
last_name: Tempera
- first_name: T
full_name: Bajjouk, T
last_name: Bajjouk
- first_name: A
full_name: Blanfuné, A
last_name: Blanfuné
- first_name: C
full_name: Chevalier, C
last_name: Chevalier
- first_name: M
full_name: Laurans, M
last_name: Laurans
- first_name: S
full_name: Mauger, S
last_name: Mauger
- first_name: M
full_name: Sourisseau, M
last_name: Sourisseau
- first_name: J
full_name: Assis, J
last_name: Assis
- first_name: L
full_name: Lévêque, L
last_name: Lévêque
- first_name: M
full_name: Valero, M
last_name: Valero
citation:
ama: Fouqueau L, Reynes L, Tempera F, et al. Seascape genetic study on Laminaria
digitata underscores the critical role of sampling schemes. Marine Ecology
Progress Series. 2024;740:23-42. doi:10.3354/meps14640
apa: Fouqueau, L., Reynes, L., Tempera, F., Bajjouk, T., Blanfuné, A., Chevalier,
C., … Valero, M. (2024). Seascape genetic study on Laminaria digitata underscores
the critical role of sampling schemes. Marine Ecology Progress Series.
Inter-Research Science Center. https://doi.org/10.3354/meps14640
chicago: Fouqueau, Louise, L Reynes, F Tempera, T Bajjouk, A Blanfuné, C Chevalier,
M Laurans, et al. “Seascape Genetic Study on Laminaria Digitata Underscores the
Critical Role of Sampling Schemes.” Marine Ecology Progress Series. Inter-Research
Science Center, 2024. https://doi.org/10.3354/meps14640.
ieee: L. Fouqueau et al., “Seascape genetic study on Laminaria digitata underscores
the critical role of sampling schemes,” Marine Ecology Progress Series,
vol. 740. Inter-Research Science Center, pp. 23–42, 2024.
ista: Fouqueau L, Reynes L, Tempera F, Bajjouk T, Blanfuné A, Chevalier C, Laurans
M, Mauger S, Sourisseau M, Assis J, Lévêque L, Valero M. 2024. Seascape genetic
study on Laminaria digitata underscores the critical role of sampling schemes.
Marine Ecology Progress Series. 740, 23–42.
mla: Fouqueau, Louise, et al. “Seascape Genetic Study on Laminaria Digitata Underscores
the Critical Role of Sampling Schemes.” Marine Ecology Progress Series,
vol. 740, Inter-Research Science Center, 2024, pp. 23–42, doi:10.3354/meps14640.
short: L. Fouqueau, L. Reynes, F. Tempera, T. Bajjouk, A. Blanfuné, C. Chevalier,
M. Laurans, S. Mauger, M. Sourisseau, J. Assis, L. Lévêque, M. Valero, Marine
Ecology Progress Series 740 (2024) 23–42.
corr_author: '1'
date_created: 2025-01-29T09:09:10Z
date_published: 2024-07-25T00:00:00Z
date_updated: 2026-10-21T08:20:48Z
day: '25'
department:
- _id: NiBa
doi: 10.3354/meps14640
fulldoi: https://doi.org/10.3354/meps14640
intvolume: ' 740'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://inria.hal.science/hal-04624490/
month: '07'
oa: 1
oa_version: Submitted Version
page: 23-42
publication: Marine Ecology Progress Series
publication_identifier:
eissn:
- 1616-1599
issn:
- 0171-8630
publication_status: published
publisher: Inter-Research Science Center
quality_controlled: '1'
researchdata_availability: unclear
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Seascape genetic study on Laminaria digitata underscores the critical role
of sampling schemes
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 740
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '22870'
abstract:
- lang: eng
text: 'Abstract: Chromosomal rearrangements can lead to the coupling of reproductive
barriers, but whether and how they contribute to completion of speciation remains
unclear. Marine snails of the genus Littorina repeatedly form hybrid zones between
populations segregating for multiple inversion arrangements, providing opportunities
to study their barrier effects. Here, we analysed two adjacent transects across
hybrid zones between two ecotypes of Littorina fabalis (‘large’ and ‘dwarf’) adapted
to different wave exposure conditions on a Swedish island. Applying whole-genome
sequencing, we found 12 putative inversions on nine of 17 chromosomes. Nine of
the putative inversions reached near differential fixation between the two ecotypes,
and all were in strong linkage disequilibrium. These inversions cover 20% of the
genome and carry 93% of divergent single nucleotide polymorphisms (SNPs). Bimodal
hybrid zones in both transects indicated that the two ecotypes of Littorina fabalis
maintain their genetic and phenotypic integrity following contact. The bimodality
reflects the strong coupling between inversion clines and the extension of the
barrier effect across the whole genome. Demographic inference suggests that coupling
arose during a period of allopatry and has been maintained for >1000 generations
after secondary contact. Overall, this study shows that the coupling of multiple
chromosomal inversions contributes to strong reproductive isolation. Notably,
two of the putative inversions overlap with inverted genomic regions associated
with ecotype differences in a closely-related species (Littorina saxatilis), suggesting
the same regions, with similar structural variants, repeatedly contribute to ecotype
evolution in distinct species.'
article_processing_charge: No
author:
- first_name: Alan
full_name: Le Moan, Alan
last_name: Le Moan
citation:
ama: Le Moan A. Coupling of twelve putative chromosomal inversions maintains a strong
barrier to gene flow between snail ecotypes. 2024. doi:10.5281/zenodo.10790257
apa: Le Moan, A. (2024). Coupling of twelve putative chromosomal inversions maintains
a strong barrier to gene flow between snail ecotypes. Repository. https://doi.org/10.5281/zenodo.10790257
chicago: Le Moan, Alan. “Coupling of Twelve Putative Chromosomal Inversions Maintains
a Strong Barrier to Gene Flow between Snail Ecotypes.” Repository, 2024. https://doi.org/10.5281/zenodo.10790257.
ieee: A. Le Moan, “Coupling of twelve putative chromosomal inversions maintains
a strong barrier to gene flow between snail ecotypes.” Repository, 2024.
ista: Le Moan A. 2024. Coupling of twelve putative chromosomal inversions maintains
a strong barrier to gene flow between snail ecotypes, Repository, 10.5281/zenodo.10790257.
mla: Le Moan, Alan. Coupling of Twelve Putative Chromosomal Inversions Maintains
a Strong Barrier to Gene Flow between Snail Ecotypes. Repository, 2024, doi:10.5281/zenodo.10790257.
short: A. Le Moan, (2024).
contributor:
- contributor_type: contact_person
first_name: Alan
last_name: Le Moan
date_created: 2026-09-09T10:39:08Z
date_published: 2024-03-06T00:00:00Z
date_updated: 2026-10-21T08:20:20Z
day: '06'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5281/zenodo.10790257
fulldoi: https://doi.org/10.5281/zenodo.10790257
main_file_link:
- open_access: '1'
url: https://doi.org/10.5281/zenodo.10790257
month: '03'
oa: 1
oa_version: None
publisher: Repository
related_material:
record:
- id: '18908'
relation: used_in_publication
status: public
status: public
title: Coupling of twelve putative chromosomal inversions maintains a strong barrier
to gene flow between snail ecotypes
type: research_data_reference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
OA_place: repository
_id: '18498'
abstract:
- lang: eng
text: 'Scripts and data used in the research study Predicting rapid adaptation in
time from adaptation in space: a 30-year field experiment in marine snails. https://doi.org/10.1101/2023.09.27.559715'
article_processing_charge: No
author:
- first_name: Diego Fernando
full_name: Garcia Castillo, Diego Fernando
id: ae681a14-dc74-11ea-a0a7-c6ef18161701
last_name: Garcia Castillo
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
- first_name: Jenny
full_name: Larsson, Jenny
last_name: Larsson
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
- first_name: Roger
full_name: Butlin, Roger
last_name: Butlin
- first_name: Kerstin
full_name: Johannesson, Kerstin
last_name: Johannesson
- first_name: Anja M
full_name: Westram, Anja M
id: 3C147470-F248-11E8-B48F-1D18A9856A87
last_name: Westram
orcid: 0000-0003-1050-4969
citation:
ama: 'Garcia Castillo DF, Barton NH, Faria R, et al. Data and code for: Predicting
rapid adaptation in time from adaptation in space: a 30-year field experiment
in marine snails. 2024. doi:10.5281/ZENODO.12159343'
apa: 'Garcia Castillo, D. F., Barton, N. H., Faria, R., Larsson, J., Stankowski,
S., Butlin, R., … Westram, A. M. (2024). Data and code for: Predicting rapid adaptation
in time from adaptation in space: a 30-year field experiment in marine snails.
Zenodo. https://doi.org/10.5281/ZENODO.12159343'
chicago: 'Garcia Castillo, Diego Fernando, Nicholas H Barton, Rui Faria, Jenny Larsson,
Sean Stankowski, Roger Butlin, Kerstin Johannesson, and Anja M Westram. “Data
and Code for: Predicting Rapid Adaptation in Time from Adaptation in Space: A
30-Year Field Experiment in Marine Snails.” Zenodo, 2024. https://doi.org/10.5281/ZENODO.12159343.'
ieee: 'D. F. Garcia Castillo et al., “Data and code for: Predicting rapid
adaptation in time from adaptation in space: a 30-year field experiment in marine
snails.” Zenodo, 2024.'
ista: 'Garcia Castillo DF, Barton NH, Faria R, Larsson J, Stankowski S, Butlin R,
Johannesson K, Westram AM. 2024. Data and code for: Predicting rapid adaptation
in time from adaptation in space: a 30-year field experiment in marine snails,
Zenodo, 10.5281/ZENODO.12159343.'
mla: 'Garcia Castillo, Diego Fernando, et al. Data and Code for: Predicting Rapid
Adaptation in Time from Adaptation in Space: A 30-Year Field Experiment in Marine
Snails. Zenodo, 2024, doi:10.5281/ZENODO.12159343.'
short: D.F. Garcia Castillo, N.H. Barton, R. Faria, J. Larsson, S. Stankowski, R.
Butlin, K. Johannesson, A.M. Westram, (2024).
corr_author: '1'
date_created: 2024-11-04T09:33:17Z
date_published: 2024-06-19T00:00:00Z
date_updated: 2026-10-21T08:18:21Z
day: '19'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5281/ZENODO.12159343
fulldoi: https://doi.org/10.5281/ZENODO.12159343
has_accepted_license: '1'
main_file_link:
- open_access: '1'
url: https://doi.org/10.5281/zenodo.12159344
month: '06'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
record:
- id: '20991'
relation: used_in_publication
status: public
- id: '18491'
relation: used_in_publication
status: public
status: public
title: 'Data and code for: Predicting rapid adaptation in time from adaptation in
space: a 30-year field experiment in marine snails'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: publisher
_id: '14711'
abstract:
- lang: eng
text: "In nature, different species find their niche in a range of environments,
each with its unique characteristics. While some thrive in uniform (homogeneous)
landscapes where environmental conditions stay relatively consistent across space,
others traverse the complexities of spatially heterogeneous terrains. Comprehending
how species are distributed and how they interact within these landscapes holds
the key to gaining insights into their evolutionary dynamics while also informing
conservation and management strategies.\r\n\r\nFor species inhabiting heterogeneous
landscapes, when the rate of dispersal is low compared to spatial fluctuations
in selection pressure, localized adaptations may emerge. Such adaptation in response
to varying selection strengths plays an important role in the persistence of populations
in our rapidly changing world. Hence, species in nature are continuously in a
struggle to adapt to local environmental conditions, to ensure their continued
survival. Natural populations can often adapt in time scales short enough for
evolutionary changes to influence ecological dynamics and vice versa, thereby
creating a feedback between evolution and demography. The analysis of this feedback
and the relative contributions of gene flow, demography, drift, and natural selection
to genetic variation and differentiation has remained a recurring theme in evolutionary
biology. Nevertheless, the effective role of these forces in maintaining variation
and shaping patterns of diversity is not fully understood. Even in homogeneous
environments devoid of local adaptations, such understanding remains elusive.
Understanding this feedback is crucial, for example in determining the conditions
under which extinction risk can be mitigated in peripheral populations subject
to deleterious mutation accumulation at the edges of species’ ranges\r\nas well
as in highly fragmented populations.\r\n\r\nIn this thesis we explore both uniform
and spatially heterogeneous metapopulations, investigating and providing theoretical
insights into the dynamics of local adaptation in the latter and examining the
dynamics of load and extinction as well as the impact of joint ecological and
evolutionary (eco-evolutionary) dynamics in the former. The thesis is divided
into 5 chapters.\r\n\r\nChapter 1 provides a general introduction into the subject
matter, clarifying concepts and ideas used throughout the thesis. In chapter 2,
we explore how fast a species distributed across a heterogeneous landscape adapts
to changing conditions marked by alterations in carrying capacity, selection pressure,
and migration rate.\r\n\r\nIn chapter 3, we investigate how migration selection
and drift influences adaptation and the maintenance of variation in a metapopulation
with three habitats, an extension of previous models of adaptation in two habitats.
We further develop analytical approximations for the critical threshold required
for polymorphism to persist.\r\n\r\nThe focus of chapter 4 of the thesis is on
understanding the interplay between ecology and evolution as coupled processes.
We investigate how eco-evolutionary feedback between migration, selection, drift,
and demography influences eco-evolutionary outcomes in marginal populations subject
to deleterious mutation accumulation. Using simulations as well as theoretical
approximations of the coupled dynamics of population size and allele frequency,
we analyze how gene flow from a large mainland source influences genetic load
and population size on an island (i.e., in a marginal population) under genetically
realistic assumptions. Analyses of this sort are important because small isolated
populations, are repeatedly affected by complex interactions between ecological
and evolutionary processes, which can lead to their death. Understanding these
interactions can therefore provide an insight into the conditions under which
extinction risk can be mitigated in peripheral populations thus, contributing
to conservation and restoration efforts.\r\n\r\nChapter 5 extends the analysis
in chapter 4 to consider the dynamics of load (due to deleterious mutation accumulation)
and extinction risk in a metapopulation. We explore the role of gene flow, selection,
and dominance on load and extinction risk and further pinpoint critical thresholds
required for metapopulation persistence.\r\n\r\nOverall this research contributes
to our understanding of ecological and evolutionary mechanisms that shape species’
persistence in fragmented landscapes, a crucial foundation for successful conservation
efforts and biodiversity management."
acknowledged_ssus:
- _id: SSU
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Oluwafunmilola O
full_name: Olusanya, Oluwafunmilola O
id: 41AD96DC-F248-11E8-B48F-1D18A9856A87
last_name: Olusanya
orcid: 0000-0003-1971-8314
citation:
ama: Olusanya OO. Local adaptation, genetic load and extinction in metapopulations.
2024. doi:10.15479/at:ista:14711
apa: Olusanya, O. O. (2024). Local adaptation, genetic load and extinction in
metapopulations. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:14711
chicago: Olusanya, Oluwafunmilola O. “Local Adaptation, Genetic Load and Extinction
in Metapopulations.” Institute of Science and Technology Austria, 2024. https://doi.org/10.15479/at:ista:14711.
ieee: O. O. Olusanya, “Local adaptation, genetic load and extinction in metapopulations,”
Institute of Science and Technology Austria, 2024.
ista: Olusanya OO. 2024. Local adaptation, genetic load and extinction in metapopulations.
Institute of Science and Technology Austria.
mla: Olusanya, Oluwafunmilola O. Local Adaptation, Genetic Load and Extinction
in Metapopulations. Institute of Science and Technology Austria, 2024, doi:10.15479/at:ista:14711.
short: O.O. Olusanya, Local Adaptation, Genetic Load and Extinction in Metapopulations,
Institute of Science and Technology Austria, 2024.
corr_author: '1'
das_tickbox: '0'
date_created: 2023-12-26T22:49:53Z
date_published: 2024-01-19T00:00:00Z
date_updated: 2026-10-21T08:24:47Z
day: '19'
ddc:
- '576'
degree_awarded: PhD
department:
- _id: NiBa
- _id: GradSch
doi: 10.15479/at:ista:14711
doi_confirm: '1'
ec_funded: 1
file:
- access_level: closed
checksum: de179b1c6758f182ff0c70d8b38c1501
content_type: application/zip
creator: oolusany
date_created: 2024-01-03T18:30:13Z
date_updated: 2024-01-03T18:30:13Z
file_id: '14730'
file_name: FinalSubmission_Thesis_OLUSANYA.zip
file_size: 16986244
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checksum: 0e331585e3cd4823320aab4e69e64ccf
content_type: application/pdf
creator: oolusany
date_created: 2024-01-03T18:31:34Z
date_updated: 2024-01-03T18:31:34Z
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file_name: FinalSubmission2_Thesis_OLUSANYA.pdf
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fulldoi: https://doi.org/10.15479/at:ista:14711
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '01'
oa: 1
oa_version: Published Version
page: '183'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: c08d3278-5a5b-11eb-8a69-fdb09b55f4b8
grant_number: P32896
name: Causes and consequences of population fragmentation
- _id: 34c872fe-11ca-11ed-8bc3-8534b82131e6
grant_number: '26380'
name: Polygenic Adaptation in a Metapopulation
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '10787'
relation: part_of_dissertation
status: public
- id: '10658'
relation: part_of_dissertation
status: public
- id: '14732'
relation: part_of_dissertation
status: public
researchdata_availability: no
status: public
supervisor:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Jitka
full_name: Polechova, Jitka
last_name: Polechova
- first_name: Himani
full_name: Sachdeva, Himani
last_name: Sachdeva
supplementarymaterial: yes
title: Local adaptation, genetic load and extinction in metapopulations
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: dissertation
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
APC_amount: 6081,83 EUR
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '17142'
abstract:
- lang: eng
text: Despite the diverse genetic origins of autism spectrum disorders (ASDs), affected
individuals share strikingly similar and correlated behavioural traits that include
perceptual and sensory processing challenges. Notably, the severity of these sensory
symptoms is often predictive of the expression of other autistic traits. However,
the origin of these perceptual deficits remains largely elusive. Here, we show
a recurrent impairment in visual threat perception that is similarly impaired
in 3 independent mouse models of ASD with different molecular aetiologies. Interestingly,
this deficit is associated with reduced avoidance of threatening environments—a
nonperceptual trait. Focusing on a common cause of ASDs, the Setd5 gene mutation,
we define the molecular mechanism. We show that the perceptual impairment is caused
by a potassium channel (Kv1)-mediated hypoexcitability in a subcortical node essential
for the initiation of escape responses, the dorsal periaqueductal grey (dPAG).
Targeted pharmacological Kv1 blockade rescued both perceptual and place avoidance
deficits, causally linking seemingly unrelated trait deficits to the dPAG. Furthermore,
we show that different molecular mechanisms converge on similar behavioural phenotypes
by demonstrating that the autism models Cul3 and Ptchd1, despite having similar
behavioural phenotypes, differ in their functional and molecular alteration. Our
findings reveal a link between rapid perception controlled by subcortical pathways
and appropriate learned interactions with the environment and define a nondevelopmental
source of such deficits in ASD.
acknowledgement: 'This work was supported by a European Research Council Starting
Grant 756502 (MJ). '
article_number: e3002668
article_processing_charge: Yes
article_type: original
author:
- first_name: Laura
full_name: Burnett, Laura
id: 3B717F68-F248-11E8-B48F-1D18A9856A87
last_name: Burnett
orcid: 0000-0002-8937-410X
- first_name: Peter
full_name: Koppensteiner, Peter
id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
last_name: Koppensteiner
orcid: 0000-0002-3509-1948
- first_name: Olga
full_name: Symonova, Olga
id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
last_name: Symonova
orcid: 0000-0003-2012-9947
- first_name: Tomas
full_name: Masson, Tomas
id: 93ac43e8-8599-11eb-9b86-f6efb0a4c207
last_name: Masson
orcid: 0000-0002-2634-6283
- first_name: Tomas A
full_name: Vega Zuniga, Tomas A
id: 2E7C4E78-F248-11E8-B48F-1D18A9856A87
last_name: Vega Zuniga
- first_name: Ximena
full_name: Contreras, Ximena
id: 475990FE-F248-11E8-B48F-1D18A9856A87
last_name: Contreras
- first_name: Thomas
full_name: Rülicke, Thomas
last_name: Rülicke
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Maximilian A
full_name: Jösch, Maximilian A
id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
last_name: Jösch
orcid: 0000-0002-3937-1330
citation:
ama: Burnett L, Koppensteiner P, Symonova O, et al. Shared behavioural impairments
in visual perception and place avoidance across different autism models are driven
by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice. PLoS
Biology. 2024;22. doi:10.1371/journal.pbio.3002668
apa: Burnett, L., Koppensteiner, P., Symonova, O., Masson, T., Vega Zuniga, T. A.,
Contreras, X., … Jösch, M. A. (2024). Shared behavioural impairments in visual
perception and place avoidance across different autism models are driven by periaqueductal
grey hypoexcitability in Setd5 haploinsufficient mice. PLoS Biology. Public
Library of Science. https://doi.org/10.1371/journal.pbio.3002668
chicago: Burnett, Laura, Peter Koppensteiner, Olga Symonova, Tomas Masson, Tomas
A Vega Zuniga, Ximena Contreras, Thomas Rülicke, Ryuichi Shigemoto, Gaia Novarino,
and Maximilian A Jösch. “Shared Behavioural Impairments in Visual Perception and
Place Avoidance across Different Autism Models Are Driven by Periaqueductal Grey
Hypoexcitability in Setd5 Haploinsufficient Mice.” PLoS Biology. Public
Library of Science, 2024. https://doi.org/10.1371/journal.pbio.3002668.
ieee: L. Burnett et al., “Shared behavioural impairments in visual perception
and place avoidance across different autism models are driven by periaqueductal
grey hypoexcitability in Setd5 haploinsufficient mice,” PLoS Biology, vol.
22. Public Library of Science, 2024.
ista: Burnett L, Koppensteiner P, Symonova O, Masson T, Vega Zuniga TA, Contreras
X, Rülicke T, Shigemoto R, Novarino G, Jösch MA. 2024. Shared behavioural impairments
in visual perception and place avoidance across different autism models are driven
by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice. PLoS
Biology. 22, e3002668.
mla: Burnett, Laura, et al. “Shared Behavioural Impairments in Visual Perception
and Place Avoidance across Different Autism Models Are Driven by Periaqueductal
Grey Hypoexcitability in Setd5 Haploinsufficient Mice.” PLoS Biology, vol.
22, e3002668, Public Library of Science, 2024, doi:10.1371/journal.pbio.3002668.
short: L. Burnett, P. Koppensteiner, O. Symonova, T. Masson, T.A. Vega Zuniga, X.
Contreras, T. Rülicke, R. Shigemoto, G. Novarino, M.A. Jösch, PLoS Biology 22
(2024).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: 'The mass spectrometry proteomics data have been deposited
at the ProteomeXchange Consortium via the PRIDE partner repository with the data
set identifier PXD051022. The data used in the analysis can be found in the ISTA
data repository DOI: 10.15479/AT:ISTA:15385. The code used to generate the results
is available at: https://zenodo.org/records/11130588.'
date_created: 2024-06-16T22:01:05Z
date_published: 2024-06-10T00:00:00Z
date_updated: 2026-10-21T08:31:42Z
day: '10'
ddc:
- '570'
department:
- _id: RySh
- _id: GaNo
- _id: MaJö
doi: 10.1371/journal.pbio.3002668
ec_funded: 1
external_id:
isi:
- '001246176800003'
pmid:
- '38857283'
file:
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checksum: 496e1aa4fd5b92b7e4087ecc2c964133
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creator: dernst
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date_updated: 2025-01-09T10:39:41Z
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title: Shared behavioural impairments in visual perception and place avoidance across
different autism models are driven by periaqueductal grey hypoexcitability in Setd5
haploinsufficient mice
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volume: 22
year: '2024'
...