---
_id: '15260'
abstract:
- lang: eng
  text: Significant advances in the synthesis and processing of colloidal nanocrystals
    have given scientists and engineers access to a vast library of building blocks
    with precisely defined size, shape, and composition. These materials have inspired
    exciting prospects to enable bottom-up fabrication of programmable materials with
    properties by design. Successfully assembling and connecting the building blocks
    into superstructures in which constituent nanocrystals can purposefully interact
    requires robust understanding of and control over a complex interplay of dynamic
    physicochemical processes. Fluid interfaces provide an advantageous experimental
    workbench to both probe and control these processes. Despite the ostensible simplicity
    of fabricating nanocrystal assemblies at a fluid interface, sensitivity to processing
    conditions and limited reproducibility have underscored the complexity of this
    process. In situ studies have provided mechanistic insights into the competing
    dynamics of key subprocesses including solvent spreading and evaporation, superlattice
    formation, ligand detachment kinetics, and nanocrystal attachment. Understanding
    how these subprocesses influence the complex choreography of self-assembly, structure
    transformation, and oriented attachment processes presents a rich research challenge.
    In this context, we present a detailed methodology for self-assembly and attachment
    of lead chalcogenide nanocrystals at a liquid–gas interface as a model system
    for the fabrication of mono- and multilayer cubic connected superlattices. We
    discuss key experimental parameters such as the characteristics of the building
    blocks and processing conditions and detailed steps from colloidal nanocrystal
    injection to superlattice transfer. We hope that this Methods/Protocols paper
    will provide guidance for future advances in the exciting path toward bringing
    the prospect of nanocrystal-based programmable materials to fruition.
article_processing_charge: No
article_type: original
author:
- first_name: Jessica
  full_name: Cimada daSilva, Jessica
  last_name: Cimada daSilva
- first_name: Daniel
  full_name: Balazs, Daniel
  id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E
  last_name: Balazs
  orcid: 0000-0001-7597-043X
- first_name: Tyler A.
  full_name: Dunbar, Tyler A.
  last_name: Dunbar
- first_name: Tobias
  full_name: Hanrath, Tobias
  last_name: Hanrath
citation:
  ama: Cimada daSilva J, Balazs D, Dunbar TA, Hanrath T. Fundamental processes and
    practical considerations of lead chalcogenide mesocrystals formed via self-assembly
    and directed attachment of nanocrystals at a fluid interface. <i>Chemistry of
    Materials</i>. 2021;33(24):9457-9472. doi:<a href="https://doi.org/10.1021/acs.chemmater.1c02910">10.1021/acs.chemmater.1c02910</a>
  apa: Cimada daSilva, J., Balazs, D., Dunbar, T. A., &#38; Hanrath, T. (2021). Fundamental
    processes and practical considerations of lead chalcogenide mesocrystals formed
    via self-assembly and directed attachment of nanocrystals at a fluid interface.
    <i>Chemistry of Materials</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.chemmater.1c02910">https://doi.org/10.1021/acs.chemmater.1c02910</a>
  chicago: Cimada daSilva, Jessica, Daniel Balazs, Tyler A. Dunbar, and Tobias Hanrath.
    “Fundamental Processes and Practical Considerations of Lead Chalcogenide Mesocrystals
    Formed via Self-Assembly and Directed Attachment of Nanocrystals at a Fluid Interface.”
    <i>Chemistry of Materials</i>. American Chemical Society, 2021. <a href="https://doi.org/10.1021/acs.chemmater.1c02910">https://doi.org/10.1021/acs.chemmater.1c02910</a>.
  ieee: J. Cimada daSilva, D. Balazs, T. A. Dunbar, and T. Hanrath, “Fundamental processes
    and practical considerations of lead chalcogenide mesocrystals formed via self-assembly
    and directed attachment of nanocrystals at a fluid interface,” <i>Chemistry of
    Materials</i>, vol. 33, no. 24. American Chemical Society, pp. 9457–9472, 2021.
  ista: Cimada daSilva J, Balazs D, Dunbar TA, Hanrath T. 2021. Fundamental processes
    and practical considerations of lead chalcogenide mesocrystals formed via self-assembly
    and directed attachment of nanocrystals at a fluid interface. Chemistry of Materials.
    33(24), 9457–9472.
  mla: Cimada daSilva, Jessica, et al. “Fundamental Processes and Practical Considerations
    of Lead Chalcogenide Mesocrystals Formed via Self-Assembly and Directed Attachment
    of Nanocrystals at a Fluid Interface.” <i>Chemistry of Materials</i>, vol. 33,
    no. 24, American Chemical Society, 2021, pp. 9457–72, doi:<a href="https://doi.org/10.1021/acs.chemmater.1c02910">10.1021/acs.chemmater.1c02910</a>.
  short: J. Cimada daSilva, D. Balazs, T.A. Dunbar, T. Hanrath, Chemistry of Materials
    33 (2021) 9457–9472.
date_created: 2024-04-03T07:23:30Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2024-04-03T13:50:53Z
day: '16'
department:
- _id: LifeSc
doi: 10.1021/acs.chemmater.1c02910
intvolume: '        33'
issue: '24'
keyword:
- Materials Chemistry
- General Chemical Engineering
- General Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.osti.gov/servlets/purl/1836502
month: '12'
oa: 1
oa_version: Submitted Version
page: 9457-9472
publication: Chemistry of Materials
publication_identifier:
  eissn:
  - 1520-5002
  issn:
  - 0897-4756
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fundamental processes and practical considerations of lead chalcogenide mesocrystals
  formed via self-assembly and directed attachment of nanocrystals at a fluid interface
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2021'
...
---
OA_place: publisher
OA_type: free access
_id: '15261'
abstract:
- lang: eng
  text: In this article, we study uniqueness of form extensions in a rather general
    setting. The method is based on the theory of ordered Hilbert spaces and the concept
    of domination of semigroups. Our main abstract result transfers uniqueness of
    form extension of a dominating form to that of a dominated form. This result can
    be applied to a multitude of examples including various magnetic Schrödinger forms
    on graphs and on manifolds.
article_number: '108848'
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
  full_name: Lenz, Daniel
  last_name: Lenz
- first_name: Marcel
  full_name: Schmidt, Marcel
  last_name: Schmidt
- first_name: Melchior
  full_name: Wirth, Melchior
  id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
  last_name: Wirth
  orcid: 0000-0002-0519-4241
citation:
  ama: Lenz D, Schmidt M, Wirth M. Uniqueness of form extensions and domination of
    semigroups. <i>Journal of Functional Analysis</i>. 2021;280(6). doi:<a href="https://doi.org/10.1016/j.jfa.2020.108848">10.1016/j.jfa.2020.108848</a>
  apa: Lenz, D., Schmidt, M., &#38; Wirth, M. (2021). Uniqueness of form extensions
    and domination of semigroups. <i>Journal of Functional Analysis</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.jfa.2020.108848">https://doi.org/10.1016/j.jfa.2020.108848</a>
  chicago: Lenz, Daniel, Marcel Schmidt, and Melchior Wirth. “Uniqueness of Form Extensions
    and Domination of Semigroups.” <i>Journal of Functional Analysis</i>. Elsevier,
    2021. <a href="https://doi.org/10.1016/j.jfa.2020.108848">https://doi.org/10.1016/j.jfa.2020.108848</a>.
  ieee: D. Lenz, M. Schmidt, and M. Wirth, “Uniqueness of form extensions and domination
    of semigroups,” <i>Journal of Functional Analysis</i>, vol. 280, no. 6. Elsevier,
    2021.
  ista: Lenz D, Schmidt M, Wirth M. 2021. Uniqueness of form extensions and domination
    of semigroups. Journal of Functional Analysis. 280(6), 108848.
  mla: Lenz, Daniel, et al. “Uniqueness of Form Extensions and Domination of Semigroups.”
    <i>Journal of Functional Analysis</i>, vol. 280, no. 6, 108848, Elsevier, 2021,
    doi:<a href="https://doi.org/10.1016/j.jfa.2020.108848">10.1016/j.jfa.2020.108848</a>.
  short: D. Lenz, M. Schmidt, M. Wirth, Journal of Functional Analysis 280 (2021).
corr_author: '1'
date_created: 2024-04-03T07:24:57Z
date_published: 2021-03-15T00:00:00Z
date_updated: 2026-06-18T17:46:54Z
day: '15'
ddc:
- '500'
department:
- _id: JaMa
doi: 10.1016/j.jfa.2020.108848
intvolume: '       280'
issue: '6'
keyword:
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.jfa.2020.108848
month: '03'
oa: 1
oa_version: Published Version
publication: Journal of Functional Analysis
publication_identifier:
  eissn:
  - 1096-0783
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Uniqueness of form extensions and domination of semigroups
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 280
year: '2021'
...
---
_id: '15263'
abstract:
- lang: eng
  text: We develop a new Riemannian descent algorithm that relies on momentum to improve
    over existing first-order methods for geodesically convex optimization. In contrast,
    accelerated convergence rates proved in prior work have only been shown to hold
    for geodesically strongly-convex objective functions. We further extend our algorithm
    to geodesically weakly-quasi-convex objectives. Our proofs of convergence rely
    on a novel estimate sequence that illustrates the dependency of the convergence
    rate on the curvature of the manifold. We validate our theoretical results empirically
    on several optimization problems defined on the sphere and on the manifold of
    positive definite matrices.
acknowledgement: The authors would like to thank professors Nicolas Boumal and Suvrit
  Sra for helpful discussions on the content of this paper. Gary Bécigneul was funded
  by the Max Planck ETH Center for Learning Systems during the course of this work.
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Foivos
  full_name: Alimisis, Foivos
  id: 19430a34-05f6-11ef-890d-c079cfc60ae2
  last_name: Alimisis
- first_name: Antonio
  full_name: Orvieto, Antonio
  last_name: Orvieto
- first_name: Gary
  full_name: Becigneul, Gary
  last_name: Becigneul
- first_name: Aurelien
  full_name: Lucchi, Aurelien
  last_name: Lucchi
citation:
  ama: 'Alimisis F, Orvieto A, Becigneul G, Lucchi A. Momentum improves optimization
    on Riemannian manifolds. In: <i>Proceedings of the 24th International Conference
    on Artificial Intelligence and Statistics</i>. Vol 130. ML Research Press; 2021:1351-1359.'
  apa: 'Alimisis, F., Orvieto, A., Becigneul, G., &#38; Lucchi, A. (2021). Momentum
    improves optimization on Riemannian manifolds. In <i>Proceedings of the 24th International
    Conference on Artificial Intelligence and Statistics</i> (Vol. 130, pp. 1351–1359).
    San Diego, CA, United States; Virtual: ML Research Press.'
  chicago: Alimisis, Foivos, Antonio Orvieto, Gary Becigneul, and Aurelien Lucchi.
    “Momentum Improves Optimization on Riemannian Manifolds.” In <i>Proceedings of
    the 24th International Conference on Artificial Intelligence and Statistics</i>,
    130:1351–59. ML Research Press, 2021.
  ieee: F. Alimisis, A. Orvieto, G. Becigneul, and A. Lucchi, “Momentum improves optimization
    on Riemannian manifolds,” in <i>Proceedings of the 24th International Conference
    on Artificial Intelligence and Statistics</i>, San Diego, CA, United States; Virtual,
    2021, vol. 130, pp. 1351–1359.
  ista: 'Alimisis F, Orvieto A, Becigneul G, Lucchi A. 2021. Momentum improves optimization
    on Riemannian manifolds. Proceedings of the 24th International Conference on Artificial
    Intelligence and Statistics. AISTATS: Conference on Artificial Intelligence and
    Statistics, PMLR, vol. 130, 1351–1359.'
  mla: Alimisis, Foivos, et al. “Momentum Improves Optimization on Riemannian Manifolds.”
    <i>Proceedings of the 24th International Conference on Artificial Intelligence
    and Statistics</i>, vol. 130, ML Research Press, 2021, pp. 1351–59.
  short: F. Alimisis, A. Orvieto, G. Becigneul, A. Lucchi, in:, Proceedings of the
    24th International Conference on Artificial Intelligence and Statistics, ML Research
    Press, 2021, pp. 1351–1359.
conference:
  end_date: 2021-04-15
  location: San Diego, CA, United States; Virtual
  name: 'AISTATS: Conference on Artificial Intelligence and Statistics'
  start_date: 2021-04-13
date_created: 2024-04-03T07:29:49Z
date_published: 2021-04-15T00:00:00Z
date_updated: 2026-06-18T17:47:19Z
day: '15'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  arxiv:
  - '2002.04144'
intvolume: '       130'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.mlr.press/v130/alimisis21a.html
month: '04'
oa: 1
oa_version: Published Version
page: 1351-1359
publication: Proceedings of the 24th International Conference on Artificial Intelligence
  and Statistics
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
status: public
title: Momentum improves optimization on Riemannian manifolds
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 130
year: '2021'
...
---
_id: '15264'
abstract:
- lang: eng
  text: Signaling by the B cell antigen receptor (BCR) initiates actin remodeling.
    The assembly of branched actin networks that are nucleated by the Arp2/3 complex
    exert outward force on the plasma membrane, allowing B cells to form membrane
    protrusions that can scan the surface of antigen-presenting cells (APCs). The
    resulting Arp2/3 complex-dependent actin retrograde flow promotes the centripetal
    movement and progressive coalescence of BCR microclusters, which amplifies BCR
    signaling. Glia maturation factor γ (GMFγ) is an actin disassembly-protein that
    releases Arp2/3 complex-nucleated actin filaments from actin networks. By doing
    so, GMFγ could either oppose the actions of the Arp2/3 complex or support Arp2/3
    complex-nucleated actin polymerization by contributing to the recycling of actin
    monomers and Arp2/3 complexes. We now show that reducing the levels of GMFγ in
    human B cell lines via transfection with a specific siRNA impairs the ability
    of B cells to spread on antigen-coated surfaces, decreases the velocity of actin
    retrograde flow, diminishes the coalescence of BCR microclusters into a central
    cluster at the B cell-APC contact site, and decreases APC-induced BCR signaling.
    These effects of depleting GMFγ are similar to what occurs when the Arp2/3 complex
    is inhibited. This suggests that GMFγ cooperates with the Arp2/3 complex to support
    BCR-induced actin remodeling and amplify BCR signaling at the immune synapse.
article_number: '647063'
article_processing_charge: No
article_type: original
author:
- first_name: Nikola
  full_name: Deretic, Nikola
  last_name: Deretic
- first_name: Madison
  full_name: Bolger-Munro, Madison
  id: 516F03FA-93A3-11EA-A7C5-D6BE3DDC885E
  last_name: Bolger-Munro
  orcid: 0000-0002-8176-4824
- first_name: Kate
  full_name: Choi, Kate
  last_name: Choi
- first_name: Libin
  full_name: Abraham, Libin
  last_name: Abraham
- first_name: Michael R.
  full_name: Gold, Michael R.
  last_name: Gold
citation:
  ama: Deretic N, Bolger-Munro M, Choi K, Abraham L, Gold MR. The actin-disassembly
    protein glia maturation factor γ enhances actin remodeling and B cell antigen
    receptor signaling at the immune synapse. <i>Frontiers in Cell and Developmental
    Biology</i>. 2021;9. doi:<a href="https://doi.org/10.3389/fcell.2021.647063">10.3389/fcell.2021.647063</a>
  apa: Deretic, N., Bolger-Munro, M., Choi, K., Abraham, L., &#38; Gold, M. R. (2021).
    The actin-disassembly protein glia maturation factor γ enhances actin remodeling
    and B cell antigen receptor signaling at the immune synapse. <i>Frontiers in Cell
    and Developmental Biology</i>. Frontiers Media. <a href="https://doi.org/10.3389/fcell.2021.647063">https://doi.org/10.3389/fcell.2021.647063</a>
  chicago: Deretic, Nikola, Madison Bolger-Munro, Kate Choi, Libin Abraham, and Michael
    R. Gold. “The Actin-Disassembly Protein Glia Maturation Factor γ Enhances Actin
    Remodeling and B Cell Antigen Receptor Signaling at the Immune Synapse.” <i>Frontiers
    in Cell and Developmental Biology</i>. Frontiers Media, 2021. <a href="https://doi.org/10.3389/fcell.2021.647063">https://doi.org/10.3389/fcell.2021.647063</a>.
  ieee: N. Deretic, M. Bolger-Munro, K. Choi, L. Abraham, and M. R. Gold, “The actin-disassembly
    protein glia maturation factor γ enhances actin remodeling and B cell antigen
    receptor signaling at the immune synapse,” <i>Frontiers in Cell and Developmental
    Biology</i>, vol. 9. Frontiers Media, 2021.
  ista: Deretic N, Bolger-Munro M, Choi K, Abraham L, Gold MR. 2021. The actin-disassembly
    protein glia maturation factor γ enhances actin remodeling and B cell antigen
    receptor signaling at the immune synapse. Frontiers in Cell and Developmental
    Biology. 9, 647063.
  mla: Deretic, Nikola, et al. “The Actin-Disassembly Protein Glia Maturation Factor
    γ Enhances Actin Remodeling and B Cell Antigen Receptor Signaling at the Immune
    Synapse.” <i>Frontiers in Cell and Developmental Biology</i>, vol. 9, 647063,
    Frontiers Media, 2021, doi:<a href="https://doi.org/10.3389/fcell.2021.647063">10.3389/fcell.2021.647063</a>.
  short: N. Deretic, M. Bolger-Munro, K. Choi, L. Abraham, M.R. Gold, Frontiers in
    Cell and Developmental Biology 9 (2021).
date_created: 2024-04-03T07:34:08Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2024-04-03T14:10:25Z
day: '01'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.3389/fcell.2021.647063
external_id:
  pmid:
  - '34336818'
file:
- access_level: open_access
  checksum: f6330b5c6718d6780383c0300fd4ef12
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-03T14:08:05Z
  date_updated: 2024-04-03T14:08:05Z
  file_id: '15291'
  file_name: 2021_Frontiers_Deretic.pdf
  file_size: 7430029
  relation: main_file
  success: 1
file_date_updated: 2024-04-03T14:08:05Z
has_accepted_license: '1'
intvolume: '         9'
keyword:
- Cell Biology
- Developmental Biology
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Cell and Developmental Biology
publication_identifier:
  issn:
  - 2296-634X
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: The actin-disassembly protein glia maturation factor γ enhances actin remodeling
  and B cell antigen receptor signaling at the immune synapse
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2021'
...
---
_id: '15265'
abstract:
- lang: eng
  text: 'The highly enhanced thermoelectric figure of merit, zT ≈ 2.6 at 573 K, obtained
    recently in Cd-doped polycrystalline AgSbTe2 by Roychowdhury et al. ( Science
    2021, 371, 722) brings it to the forefront of thermoelectric and energy materials
    research. Ag/Sb cationic ordering in polycrystalline AgSbTe2 was a challenging
    issue for a long time: their ordered arrangement in the cationic sublattice in
    polycrystalline samples remained elusive despite multiple theoretical predictions
    and experimental studies. Recently, selective cation doping has been used to enhance
    the Ag/Sb ordering, and cation ordered nanoscale (2–4 nm) domains were observed
    in polycrystalline AgSbTe2, which reduce lattice thermal conductivity. The enhanced
    cation ordering also delocalizes disorder-induced localized electronic states,
    and consequently the electronic transport enhances. In this Focus Review, we provide
    the details of the rational design of a high-performance thermoelectric material
    using the recently developed atomic order–disorder optimization strategy with
    AgSbTe2 as an example. Atomic disorder is ubiquitous in most thermoelectric materials,
    and the atomic order–disorder optimization strategy applies to a large variety
    of thermoelectric materials.'
article_processing_charge: No
article_type: original
author:
- first_name: Tanmoy
  full_name: Ghosh, Tanmoy
  id: a5fc9bc3-feff-11ea-93fe-e8015a3c7e9d
  last_name: Ghosh
- first_name: Subhajit
  full_name: Roychowdhury, Subhajit
  last_name: Roychowdhury
- first_name: Moinak
  full_name: Dutta, Moinak
  last_name: Dutta
- first_name: Kanishka
  full_name: Biswas, Kanishka
  last_name: Biswas
citation:
  ama: 'Ghosh T, Roychowdhury S, Dutta M, Biswas K. High-performance thermoelectric
    energy conversion: A tale of atomic ordering in AgSbTe2. <i>ACS Energy Letters</i>.
    2021;6(8):2825-2837. doi:<a href="https://doi.org/10.1021/acsenergylett.1c01184">10.1021/acsenergylett.1c01184</a>'
  apa: 'Ghosh, T., Roychowdhury, S., Dutta, M., &#38; Biswas, K. (2021). High-performance
    thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2. <i>ACS
    Energy Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acsenergylett.1c01184">https://doi.org/10.1021/acsenergylett.1c01184</a>'
  chicago: 'Ghosh, Tanmoy, Subhajit Roychowdhury, Moinak Dutta, and Kanishka Biswas.
    “High-Performance Thermoelectric Energy Conversion: A Tale of Atomic Ordering
    in AgSbTe2.” <i>ACS Energy Letters</i>. American Chemical Society, 2021. <a href="https://doi.org/10.1021/acsenergylett.1c01184">https://doi.org/10.1021/acsenergylett.1c01184</a>.'
  ieee: 'T. Ghosh, S. Roychowdhury, M. Dutta, and K. Biswas, “High-performance thermoelectric
    energy conversion: A tale of atomic ordering in AgSbTe2,” <i>ACS Energy Letters</i>,
    vol. 6, no. 8. American Chemical Society, pp. 2825–2837, 2021.'
  ista: 'Ghosh T, Roychowdhury S, Dutta M, Biswas K. 2021. High-performance thermoelectric
    energy conversion: A tale of atomic ordering in AgSbTe2. ACS Energy Letters. 6(8),
    2825–2837.'
  mla: 'Ghosh, Tanmoy, et al. “High-Performance Thermoelectric Energy Conversion:
    A Tale of Atomic Ordering in AgSbTe2.” <i>ACS Energy Letters</i>, vol. 6, no.
    8, American Chemical Society, 2021, pp. 2825–37, doi:<a href="https://doi.org/10.1021/acsenergylett.1c01184">10.1021/acsenergylett.1c01184</a>.'
  short: T. Ghosh, S. Roychowdhury, M. Dutta, K. Biswas, ACS Energy Letters 6 (2021)
    2825–2837.
date_created: 2024-04-03T07:36:10Z
date_published: 2021-07-21T00:00:00Z
date_updated: 2024-04-29T06:56:57Z
day: '21'
department:
- _id: MaIb
doi: 10.1021/acsenergylett.1c01184
intvolume: '         6'
issue: '8'
keyword:
- Materials Chemistry
- Energy Engineering and Power Technology
- Fuel Technology
- Renewable Energy
- Sustainability and the Environment
- Chemistry (miscellaneous)
language:
- iso: eng
month: '07'
oa_version: None
page: 2825-2837
publication: ACS Energy Letters
publication_identifier:
  issn:
  - 2380-8195
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
status: public
title: 'High-performance thermoelectric energy conversion: A tale of atomic ordering
  in AgSbTe2'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2021'
...
---
_id: '15266'
abstract:
- lang: eng
  text: Plant pathogens often exploit a whole range of effectors to facilitate infection.
    The RXLR effector AVR1 produced by the oomycete plant pathogen Phytophthora infestans
    suppresses host defense by targeting Sec5. Sec5 is a subunit of the exocyst, a
    protein complex that is important for mediating polarized exocytosis during plant
    development and defense against pathogens. The mechanism by which AVR1 manipulates
    Sec5 functioning is unknown. In this study, we analyzed the effect of AVR1 on
    Sec5 localization and functioning in the moss Physcomitrium patens. P. patens
    has four Sec5 homologs. Two (PpSec5b and PpSec5d) were found to interact with
    AVR1 in yeast-two-hybrid assays while none of the four showed a positive interaction
    with AVR1ΔT, a truncated version of AVR1. In P. patens lines carrying β-estradiol
    inducible AVR1 or AVR1ΔT transgenes, expression of AVR1 or AVR1ΔT caused defects
    in the development of caulonemal protonema cells and abnormal morphology of chloronema
    cells. Similar phenotypes were observed in Sec5- or Sec6-silenced P. patens lines,
    suggesting that both AVR1 and AVR1ΔT affect exocyst functioning in P. patens.
    With respect to Sec5 localization we found no differences between β-estradiol-treated
    and untreated transgenic AVR1 lines. Sec5 localizes at the plasma membrane in
    growing caulonema cells, also during pathogen attack, and its subcellular localization
    is the same, with or without AVR1 in the vicinity.
article_number: e0249637
article_processing_charge: Yes
article_type: original
author:
- first_name: Elysa J. R.
  full_name: Overdijk, Elysa J. R.
  last_name: Overdijk
- first_name: Vera
  full_name: Putker, Vera
  last_name: Putker
- first_name: Joep
  full_name: Smits, Joep
  last_name: Smits
- first_name: Han
  full_name: Tang, Han
  id: 19BDF720-25A0-11EA-AC6E-928F3DDC885E
  last_name: Tang
  orcid: 0000-0001-6152-6637
- first_name: Klaas
  full_name: Bouwmeester, Klaas
  last_name: Bouwmeester
- first_name: Francine
  full_name: Govers, Francine
  last_name: Govers
- first_name: Tijs
  full_name: Ketelaar, Tijs
  last_name: Ketelaar
citation:
  ama: Overdijk EJR, Putker V, Smits J, et al. Phytophthora infestans RXLR effector
    AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization.
    <i>PLoS One</i>. 2021;16(4). doi:<a href="https://doi.org/10.1371/journal.pone.0249637">10.1371/journal.pone.0249637</a>
  apa: Overdijk, E. J. R., Putker, V., Smits, J., Tang, H., Bouwmeester, K., Govers,
    F., &#38; Ketelaar, T. (2021). Phytophthora infestans RXLR effector AVR1 disturbs
    the growth of Physcomitrium patens without affecting Sec5 localization. <i>PLoS
    One</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0249637">https://doi.org/10.1371/journal.pone.0249637</a>
  chicago: Overdijk, Elysa J. R., Vera Putker, Joep Smits, Han Tang, Klaas Bouwmeester,
    Francine Govers, and Tijs Ketelaar. “Phytophthora Infestans RXLR Effector AVR1
    Disturbs the Growth of Physcomitrium Patens without Affecting Sec5 Localization.”
    <i>PLoS One</i>. Public Library of Science, 2021. <a href="https://doi.org/10.1371/journal.pone.0249637">https://doi.org/10.1371/journal.pone.0249637</a>.
  ieee: E. J. R. Overdijk <i>et al.</i>, “Phytophthora infestans RXLR effector AVR1
    disturbs the growth of Physcomitrium patens without affecting Sec5 localization,”
    <i>PLoS One</i>, vol. 16, no. 4. Public Library of Science, 2021.
  ista: Overdijk EJR, Putker V, Smits J, Tang H, Bouwmeester K, Govers F, Ketelaar
    T. 2021. Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium
    patens without affecting Sec5 localization. PLoS One. 16(4), e0249637.
  mla: Overdijk, Elysa J. R., et al. “Phytophthora Infestans RXLR Effector AVR1 Disturbs
    the Growth of Physcomitrium Patens without Affecting Sec5 Localization.” <i>PLoS
    One</i>, vol. 16, no. 4, e0249637, Public Library of Science, 2021, doi:<a href="https://doi.org/10.1371/journal.pone.0249637">10.1371/journal.pone.0249637</a>.
  short: E.J.R. Overdijk, V. Putker, J. Smits, H. Tang, K. Bouwmeester, F. Govers,
    T. Ketelaar, PLoS One 16 (2021).
date_created: 2024-04-03T07:38:14Z
date_published: 2021-04-08T00:00:00Z
date_updated: 2024-04-29T06:53:15Z
day: '08'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1371/journal.pone.0249637
external_id:
  pmid:
  - '33831039'
file:
- access_level: open_access
  checksum: 25b7b329435af57db2c95571a8ef32fe
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-29T06:51:59Z
  date_updated: 2024-04-29T06:51:59Z
  file_id: '15349'
  file_name: 2021_PlosOne_Overdijk.pdf
  file_size: 4738995
  relation: main_file
  success: 1
file_date_updated: 2024-04-29T06:51:59Z
has_accepted_license: '1'
intvolume: '        16'
issue: '4'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLoS One
publication_identifier:
  issn:
  - 1932-6203
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium
  patens without affecting Sec5 localization
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2021'
...
---
_id: '15269'
abstract:
- lang: eng
  text: We study different aspects of quantum field theory at finite density using
    methods from quantum information theory. For simplicity we focus on massive Dirac
    fermions with nonzero chemical potential, and work in 1 + 1 space-time dimensions.
    Using the entanglement entropy on an interval, we construct an entropic <jats:italic>c</jats:italic>-function
    that is finite. Unlike what happens in Lorentz-invariant theories, this <jats:italic>c</jats:italic>-function
    exhibits a strong violation of monotonicity; it also encodes the creation of long-range
    entanglement from the Fermi surface. Motivated by previous works on lattice models,
    we next calculate numerically the Renyi entropies and find Friedel-type oscillations;
    these are understood in terms of a defect operator product expansion. Furthermore,
    we consider the mutual information as a measure of correlation functions between
    different regions. Using a long-distance expansion previously developed by Cardy,
    we argue that the mutual information detects Fermi surface correlations already
    at leading order in the expansion. We also analyze the relative entropy and its
    Renyi generalizations in order to distinguish states with different charge and/or
    mass. In particular, we show that states in different superselection sectors give
    rise to a super-extensive behavior in the relative entropy. Finally, we discuss
    possible extensions to interacting theories, and argue for the relevance of some
    of these measures for probing non-Fermi liquids.
acknowledgement: "We thank H. Casini for many interesting discussions and comments
  on the manuscript.\r\nLD is supported by CNEA and UNCuyo, Inst. Balseiro. RM is
  supported by IST Austria.\r\nMS is supported by CONICET and UNCuyo, Inst. Balseiro.
  GT is supported by CONICET\r\n(PIP grant 11220150100299), ANPCyT (PICT 2018-2517),
  CNEA, and UNCuyo,\r\nInst. Balseiro."
article_number: '79'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Lucas
  full_name: Daguerre, Lucas
  last_name: Daguerre
- first_name: Raimel A
  full_name: Medina Ramos, Raimel A
  id: CE680B90-D85A-11E9-B684-C920E6697425
  last_name: Medina Ramos
  orcid: 0000-0002-5383-2869
- first_name: Mario
  full_name: Solís, Mario
  last_name: Solís
- first_name: Gonzalo
  full_name: Torroba, Gonzalo
  last_name: Torroba
citation:
  ama: Daguerre L, Medina Ramos RA, Solís M, Torroba G. Aspects of quantum information
    in finite density field theory. <i>Journal of High Energy Physics</i>. 2021;2021(3).
    doi:<a href="https://doi.org/10.1007/jhep03(2021)079">10.1007/jhep03(2021)079</a>
  apa: Daguerre, L., Medina Ramos, R. A., Solís, M., &#38; Torroba, G. (2021). Aspects
    of quantum information in finite density field theory. <i>Journal of High Energy
    Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/jhep03(2021)079">https://doi.org/10.1007/jhep03(2021)079</a>
  chicago: Daguerre, Lucas, Raimel A Medina Ramos, Mario Solís, and Gonzalo Torroba.
    “Aspects of Quantum Information in Finite Density Field Theory.” <i>Journal of
    High Energy Physics</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/jhep03(2021)079">https://doi.org/10.1007/jhep03(2021)079</a>.
  ieee: L. Daguerre, R. A. Medina Ramos, M. Solís, and G. Torroba, “Aspects of quantum
    information in finite density field theory,” <i>Journal of High Energy Physics</i>,
    vol. 2021, no. 3. Springer Nature, 2021.
  ista: Daguerre L, Medina Ramos RA, Solís M, Torroba G. 2021. Aspects of quantum
    information in finite density field theory. Journal of High Energy Physics. 2021(3),
    79.
  mla: Daguerre, Lucas, et al. “Aspects of Quantum Information in Finite Density Field
    Theory.” <i>Journal of High Energy Physics</i>, vol. 2021, no. 3, 79, Springer
    Nature, 2021, doi:<a href="https://doi.org/10.1007/jhep03(2021)079">10.1007/jhep03(2021)079</a>.
  short: L. Daguerre, R.A. Medina Ramos, M. Solís, G. Torroba, Journal of High Energy
    Physics 2021 (2021).
corr_author: '1'
date_created: 2024-04-03T07:51:06Z
date_published: 2021-03-08T00:00:00Z
date_updated: 2025-09-10T10:15:02Z
day: '08'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1007/jhep03(2021)079
external_id:
  arxiv:
  - '2011.01252'
  isi:
  - '000627376600004'
file:
- access_level: open_access
  checksum: 4f540e63988ee87173e02f51a19a6672
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-10T09:18:38Z
  date_updated: 2024-04-10T09:18:38Z
  file_id: '15310'
  file_name: 2021_JourHighEnergyPhysics_Daguerre.pdf
  file_size: 5389195
  relation: main_file
  success: 1
file_date_updated: 2024-04-10T09:18:38Z
has_accepted_license: '1'
intvolume: '      2021'
isi: 1
issue: '3'
keyword:
- Nuclear and High Energy Physics
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Journal of High Energy Physics
publication_identifier:
  issn:
  - 1029-8479
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Aspects of quantum information in finite density field theory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2021
year: '2021'
...
---
_id: '15270'
abstract:
- lang: eng
  text: Various toxic compounds disrupt bacterial physiology. While bacteria harbor
    defense mechanisms to mitigate the toxicity, these mechanisms are often coupled
    to the physiological state of the cells and become ineffective when the physiology
    is severely disrupted.
article_number: '676'
article_processing_charge: Yes
article_type: original
author:
- first_name: Dai
  full_name: Le, Dai
  last_name: Le
- first_name: Ekaterina
  full_name: Krasnopeeva, Ekaterina
  id: 1F1EE44A-BF83-11EA-B3C1-BB9CC619BF3A
  last_name: Krasnopeeva
- first_name: Faris
  full_name: Sinjab, Faris
  last_name: Sinjab
- first_name: Teuta
  full_name: Pilizota, Teuta
  last_name: Pilizota
- first_name: Minsu
  full_name: Kim, Minsu
  last_name: Kim
citation:
  ama: Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. Active efflux leads to heterogeneous
    dissipation of proton motive force by protonophores in bacteria. <i>mBio</i>.
    2021;12(4). doi:<a href="https://doi.org/10.1128/mbio.00676-21">10.1128/mbio.00676-21</a>
  apa: Le, D., Krasnopeeva, E., Sinjab, F., Pilizota, T., &#38; Kim, M. (2021). Active
    efflux leads to heterogeneous dissipation of proton motive force by protonophores
    in bacteria. <i>MBio</i>. American Society for Microbiology. <a href="https://doi.org/10.1128/mbio.00676-21">https://doi.org/10.1128/mbio.00676-21</a>
  chicago: Le, Dai, Ekaterina Krasnopeeva, Faris Sinjab, Teuta Pilizota, and Minsu
    Kim. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force
    by Protonophores in Bacteria.” <i>MBio</i>. American Society for Microbiology,
    2021. <a href="https://doi.org/10.1128/mbio.00676-21">https://doi.org/10.1128/mbio.00676-21</a>.
  ieee: D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, and M. Kim, “Active efflux
    leads to heterogeneous dissipation of proton motive force by protonophores in
    bacteria,” <i>mBio</i>, vol. 12, no. 4. American Society for Microbiology, 2021.
  ista: Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. 2021. Active efflux leads
    to heterogeneous dissipation of proton motive force by protonophores in bacteria.
    mBio. 12(4), 676.
  mla: Le, Dai, et al. “Active Efflux Leads to Heterogeneous Dissipation of Proton
    Motive Force by Protonophores in Bacteria.” <i>MBio</i>, vol. 12, no. 4, 676,
    American Society for Microbiology, 2021, doi:<a href="https://doi.org/10.1128/mbio.00676-21">10.1128/mbio.00676-21</a>.
  short: D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, M. Kim, MBio 12 (2021).
date_created: 2024-04-03T07:51:57Z
date_published: 2021-08-31T00:00:00Z
date_updated: 2024-04-10T09:13:59Z
day: '31'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1128/mbio.00676-21
external_id:
  pmid:
  - '34253054'
file:
- access_level: open_access
  checksum: 529e3f97ae5c5f5cc743c4fc130c9440
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-10T09:05:49Z
  date_updated: 2024-04-10T09:05:49Z
  file_id: '15309'
  file_name: 2021_mBio_Le.pdf
  file_size: 1344204
  relation: main_file
  success: 1
file_date_updated: 2024-04-10T09:05:49Z
has_accepted_license: '1'
intvolume: '        12'
issue: '4'
keyword:
- Virology
- Microbiology
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: mBio
publication_identifier:
  issn:
  - 2150-7511
publication_status: published
publisher: American Society for Microbiology
quality_controlled: '1'
status: public
title: Active efflux leads to heterogeneous dissipation of proton motive force by
  protonophores in bacteria
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2021'
...
---
_id: '15271'
abstract:
- lang: eng
  text: 'We settle the complexity of the (∆ + 1)-coloring and (∆ + 1)-list coloring
    problems intheCONGESTED CLIQUEmodel by presenting a simpledeterministicalgorithm
    for both problemsrunning in a constant number of rounds.  This matches the complexity
    of the recent breakthroughrandomizedconstant-round (∆ + 1)-list coloring algorithm
    due to Chang et al.  [Proceedings of the38th  ACM  Symposium  on  Principles  of  Distributed  Computing,  2019]  and  significantly  improvesupon
    the state-of-the-artO(log ∆)-round deterministic (∆ + 1)-coloring bound of Parter
    [Proceed-ings of the 45th Annual International Colloquium on Automata, Languages
    and Programming].  Aremarkable property of our algorithm is its simplicity.  Whereas
    the state-of-the-artrandomizedal-gorithms for this problem are based on the quite
    involved local coloring algorithm of Chang, Li, andPettie [Proceedings of the
    50th Annual ACM SIGACT Symposium on Theory of Computing, 2018],our algorithm can
    be described in just a few lines.  At a high level, it applies a careful derandomiza-tion
    of a recursive procedure which partitions the nodes and their respective palettes
    into separatebins.  We show that afterO(1) recursion steps, the remaining uncolored
    subgraph within each bin haslinear size and thus can be solved locally by collecting
    it to a single node.  This algorithm can alsobe implemented in the massively parallel
    computation (MPC) model provided that each machine haslinear (inn, the number
    of nodes in the input graph) space.  We also show an extension of our algo-rithm
    to theMPCregime, in which machines havesublinearspace:  we present the first deterministic(∆
    + 1)-list coloring algorithm designed for sublinear-spaceMPC, which runs inO(log
    ∆ + log logn)rounds.'
acknowledgement: The  first  author  was  partially  supported  by  the  Centre  for  Discrete  Mathematics
  and its Applications, by the IBM Faculty Award, and by the EPSRC award EP/N011163/1.  The
  second author was partially supported by the European Union’s Horizon 2020 research
  and innovation program under the Marie Sklodowska-Curie grant agreement 754411.  The
  first and third authors were partially supported by a Weizmann-UK Making Connections
  grant.
article_processing_charge: No
article_type: original
author:
- first_name: Artur
  full_name: Czumaj, Artur
  last_name: Czumaj
- first_name: Peter
  full_name: Davies, Peter
  id: 11396234-BB50-11E9-B24C-90FCE5697425
  last_name: Davies
  orcid: 0000-0002-5646-9524
- first_name: Merav
  full_name: Parter, Merav
  last_name: Parter
citation:
  ama: Czumaj A, Davies P, Parter M. Simple, deterministic, constant-round coloring
    in congested clique and MPC. <i>SIAM Journal on Computing</i>. 2021;50(5):1603-1626.
    doi:<a href="https://doi.org/10.1137/20m1366502">10.1137/20m1366502</a>
  apa: Czumaj, A., Davies, P., &#38; Parter, M. (2021). Simple, deterministic, constant-round
    coloring in congested clique and MPC. <i>SIAM Journal on Computing</i>. Society
    for Industrial and Applied Mathematics. <a href="https://doi.org/10.1137/20m1366502">https://doi.org/10.1137/20m1366502</a>
  chicago: Czumaj, Artur, Peter Davies, and Merav Parter. “Simple, Deterministic,
    Constant-Round Coloring in Congested Clique and MPC.” <i>SIAM Journal on Computing</i>.
    Society for Industrial and Applied Mathematics, 2021. <a href="https://doi.org/10.1137/20m1366502">https://doi.org/10.1137/20m1366502</a>.
  ieee: A. Czumaj, P. Davies, and M. Parter, “Simple, deterministic, constant-round
    coloring in congested clique and MPC,” <i>SIAM Journal on Computing</i>, vol.
    50, no. 5. Society for Industrial and Applied Mathematics, pp. 1603–1626, 2021.
  ista: Czumaj A, Davies P, Parter M. 2021. Simple, deterministic, constant-round
    coloring in congested clique and MPC. SIAM Journal on Computing. 50(5), 1603–1626.
  mla: Czumaj, Artur, et al. “Simple, Deterministic, Constant-Round Coloring in Congested
    Clique and MPC.” <i>SIAM Journal on Computing</i>, vol. 50, no. 5, Society for
    Industrial and Applied Mathematics, 2021, pp. 1603–26, doi:<a href="https://doi.org/10.1137/20m1366502">10.1137/20m1366502</a>.
  short: A. Czumaj, P. Davies, M. Parter, SIAM Journal on Computing 50 (2021) 1603–1626.
date_created: 2024-04-03T07:53:22Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2025-09-10T10:14:11Z
day: '01'
department:
- _id: DaAl
doi: 10.1137/20m1366502
ec_funded: 1
external_id:
  isi:
  - '000713008600004'
intvolume: '        50'
isi: 1
issue: '5'
keyword:
- General Mathematics
- General Computer Science
language:
- iso: eng
month: '01'
oa_version: None
page: 1603-1626
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: SIAM Journal on Computing
publication_identifier:
  eissn:
  - 1095-7111
  issn:
  - 0097-5397
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Simple, deterministic, constant-round coloring in congested clique and MPC
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 50
year: '2021'
...
---
_id: '15272'
abstract:
- lang: eng
  text: The assembly of neuronal circuits involves the migrations of neurons from
    their place of birth to their final location in the nervous system, as well as
    the coordinated growth and patterning of axons and dendrites. In screens for genes
    required for patterning of the nervous system, we identified the <jats:italic>catp-8/P5A-ATPase</jats:italic>
    as an important regulator of neural patterning. P5A-ATPases are part of the P-type
    ATPases, a family of proteins known to serve a conserved function as transporters
    of ions, lipids and polyamines in unicellular eukaryotes, plants, and humans.
    While the function of many P-type ATPases is relatively well understood, the function
    of P5A-ATPases in metazoans remained elusive. We show here, that the <jats:italic>Caenorhabditis
    elegans</jats:italic> ortholog <jats:italic>catp-8/P5A-ATPase</jats:italic> is
    required for defined aspects of nervous system development. Specifically, the
    <jats:italic>catp-8/P5A-ATPase</jats:italic> serves functions in shaping the elaborately
    sculpted dendritic trees of somatosensory PVD neurons. Moreover, <jats:italic>catp-8/P5A-ATPase</jats:italic>
    is required for axonal guidance and repulsion at the midline, as well as embryonic
    and postembryonic neuronal migrations. Interestingly, not all axons at the midline
    require <jats:italic>catp-8/P5A-ATPase</jats:italic>, although the axons run in
    the same fascicles and navigate the same space. Similarly, not all neuronal migrations
    require <jats:italic>catp-8/P5A-ATPase</jats:italic>. A CATP-8/P5A-ATPase reporter
    is localized to the ER in most, if not all, tissues and <jats:italic>catp-8/P5A-ATPase</jats:italic>
    can function both cell-autonomously and non-autonomously to regulate neuronal
    development. Genetic analyses establish that <jats:italic>catp-8/P5A-ATPase</jats:italic>
    can function in multiple pathways, including the Menorin pathway, previously shown
    to control dendritic patterning in PVD, and Wnt signaling, which functions to
    control neuronal migrations. Lastly, we show that <jats:italic>catp-8/P5A-ATPase</jats:italic>
    is required for localizing select transmembrane proteins necessary for dendrite
    morphogenesis. Collectively, our studies suggest that <jats:italic>catp-8/P5A-ATPase</jats:italic>
    serves diverse, yet specific, roles in different genetic pathways and may be involved
    in the regulation or localization of transmembrane and secreted proteins to specific
    subcellular compartments.
article_number: e1009475
article_processing_charge: No
article_type: original
author:
- first_name: Leo T. H.
  full_name: Tang, Leo T. H.
  last_name: Tang
- first_name: Meera
  full_name: Trivedi, Meera
  last_name: Trivedi
- first_name: Jenna
  full_name: Freund, Jenna
  last_name: Freund
- first_name: Christopher J.
  full_name: Salazar, Christopher J.
  last_name: Salazar
- first_name: Maisha
  full_name: Rahman, Maisha
  last_name: Rahman
- first_name: Nelson
  full_name: Ramirez, Nelson
  id: 39831956-E4FE-11E9-85DE-0DC7E5697425
  last_name: Ramirez
- first_name: Garrett
  full_name: Lee, Garrett
  last_name: Lee
- first_name: Yu
  full_name: Wang, Yu
  last_name: Wang
- first_name: Barth D.
  full_name: Grant, Barth D.
  last_name: Grant
- first_name: Hannes E.
  full_name: Bülow, Hannes E.
  last_name: Bülow
citation:
  ama: Tang LTH, Trivedi M, Freund J, et al. The CATP-8/P5A-type ATPase functions
    in multiple pathways during neuronal patterning. <i>PLOS Genetics</i>. 2021;17(7).
    doi:<a href="https://doi.org/10.1371/journal.pgen.1009475">10.1371/journal.pgen.1009475</a>
  apa: Tang, L. T. H., Trivedi, M., Freund, J., Salazar, C. J., Rahman, M., Ramirez,
    N., … Bülow, H. E. (2021). The CATP-8/P5A-type ATPase functions in multiple pathways
    during neuronal patterning. <i>PLOS Genetics</i>. Public Library of Science. <a
    href="https://doi.org/10.1371/journal.pgen.1009475">https://doi.org/10.1371/journal.pgen.1009475</a>
  chicago: Tang, Leo T. H., Meera Trivedi, Jenna Freund, Christopher J. Salazar, Maisha
    Rahman, Nelson Ramirez, Garrett Lee, Yu Wang, Barth D. Grant, and Hannes E. Bülow.
    “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.”
    <i>PLOS Genetics</i>. Public Library of Science, 2021. <a href="https://doi.org/10.1371/journal.pgen.1009475">https://doi.org/10.1371/journal.pgen.1009475</a>.
  ieee: L. T. H. Tang <i>et al.</i>, “The CATP-8/P5A-type ATPase functions in multiple
    pathways during neuronal patterning,” <i>PLOS Genetics</i>, vol. 17, no. 7. Public
    Library of Science, 2021.
  ista: Tang LTH, Trivedi M, Freund J, Salazar CJ, Rahman M, Ramirez N, Lee G, Wang
    Y, Grant BD, Bülow HE. 2021. The CATP-8/P5A-type ATPase functions in multiple
    pathways during neuronal patterning. PLOS Genetics. 17(7), e1009475.
  mla: Tang, Leo T. H., et al. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways
    during Neuronal Patterning.” <i>PLOS Genetics</i>, vol. 17, no. 7, e1009475, Public
    Library of Science, 2021, doi:<a href="https://doi.org/10.1371/journal.pgen.1009475">10.1371/journal.pgen.1009475</a>.
  short: L.T.H. Tang, M. Trivedi, J. Freund, C.J. Salazar, M. Rahman, N. Ramirez,
    G. Lee, Y. Wang, B.D. Grant, H.E. Bülow, PLOS Genetics 17 (2021).
date_created: 2024-04-03T07:57:12Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2024-04-10T08:57:16Z
day: '01'
ddc:
- '570'
department:
- _id: MaDe
doi: 10.1371/journal.pgen.1009475
external_id:
  pmid:
  - '34197450'
file:
- access_level: open_access
  checksum: 7352b195e4db6d404f702fe6ad8b55ad
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-10T08:53:43Z
  date_updated: 2024-04-10T08:53:43Z
  file_id: '15308'
  file_name: 2021_PlosGenetics_Tang.pdf
  file_size: 4224934
  relation: main_file
  success: 1
file_date_updated: 2024-04-10T08:53:43Z
has_accepted_license: '1'
intvolume: '        17'
issue: '7'
keyword:
- Cancer Research
- Genetics (clinical)
- Genetics
- Molecular Biology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Genetics
publication_identifier:
  issn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2021'
...
---
_id: '15273'
abstract:
- lang: eng
  text: Synapses of glutamatergic mossy fibers (MFs) onto cerebellar unipolar brush
    cells (UBCs) generate slow excitatory (ON) or inhibitory (OFF) postsynaptic responses
    dependent on the complement of glutamate receptors expressed on the UBC’s large
    dendritic brush. Using mouse brain slice recording and computational modeling
    of synaptic transmission, we found that substantial glutamate is maintained in
    the UBC synaptic cleft, sufficient to modify spontaneous firing in OFF UBCs and
    tonically desensitize AMPARs of ON UBCs. The source of this ambient glutamate
    was spontaneous, spike-independent exocytosis from the MF terminal, and its level
    was dependent on activity of glutamate transporters EAAT1–2. Increasing levels
    of ambient glutamate shifted the polarity of evoked synaptic responses in ON UBCs
    and altered the phase of responses to in vivo-like synaptic activity. Unlike classical
    fast synapses, receptors at the UBC synapse are virtually always exposed to a
    significant level of glutamate, which varies in a graded manner during transmission.
article_number: e63819
article_processing_charge: Yes
article_type: original
author:
- first_name: Timothy S
  full_name: Balmer, Timothy S
  last_name: Balmer
- first_name: Carolina
  full_name: Borges Merjane, Carolina
  id: 4305C450-F248-11E8-B48F-1D18A9856A87
  last_name: Borges Merjane
  orcid: 0000-0003-0005-401X
- first_name: Laurence O
  full_name: Trussell, Laurence O
  last_name: Trussell
citation:
  ama: Balmer TS, Borges Merjane C, Trussell LO. Incomplete removal of extracellular
    glutamate controls synaptic transmission and integration at a cerebellar synapse.
    <i>eLife</i>. 2021;10. doi:<a href="https://doi.org/10.7554/elife.63819">10.7554/elife.63819</a>
  apa: Balmer, T. S., Borges Merjane, C., &#38; Trussell, L. O. (2021). Incomplete
    removal of extracellular glutamate controls synaptic transmission and integration
    at a cerebellar synapse. <i>ELife</i>. eLife Sciences Publications. <a href="https://doi.org/10.7554/elife.63819">https://doi.org/10.7554/elife.63819</a>
  chicago: Balmer, Timothy S, Carolina Borges Merjane, and Laurence O Trussell. “Incomplete
    Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration
    at a Cerebellar Synapse.” <i>ELife</i>. eLife Sciences Publications, 2021. <a
    href="https://doi.org/10.7554/elife.63819">https://doi.org/10.7554/elife.63819</a>.
  ieee: T. S. Balmer, C. Borges Merjane, and L. O. Trussell, “Incomplete removal of
    extracellular glutamate controls synaptic transmission and integration at a cerebellar
    synapse,” <i>eLife</i>, vol. 10. eLife Sciences Publications, 2021.
  ista: Balmer TS, Borges Merjane C, Trussell LO. 2021. Incomplete removal of extracellular
    glutamate controls synaptic transmission and integration at a cerebellar synapse.
    eLife. 10, e63819.
  mla: Balmer, Timothy S., et al. “Incomplete Removal of Extracellular Glutamate Controls
    Synaptic Transmission and Integration at a Cerebellar Synapse.” <i>ELife</i>,
    vol. 10, e63819, eLife Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/elife.63819">10.7554/elife.63819</a>.
  short: T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021).
date_created: 2024-04-03T07:58:11Z
date_published: 2021-02-22T00:00:00Z
date_updated: 2024-04-09T11:15:01Z
day: '22'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.7554/elife.63819
external_id:
  pmid:
  - '33616036'
file:
- access_level: open_access
  checksum: bbd4de2e54b7fbc11fba14f59e87fe3f
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T11:13:07Z
  date_updated: 2024-04-09T11:13:07Z
  file_id: '15307'
  file_name: 2021_eLife_Balmer.pdf
  file_size: 6997954
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T11:13:07Z
has_accepted_license: '1'
intvolume: '        10'
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Medicine
- General Neuroscience
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  issn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
status: public
title: Incomplete removal of extracellular glutamate controls synaptic transmission
  and integration at a cerebellar synapse
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2021'
...
---
_id: '15274'
abstract:
- lang: eng
  text: Copper (Cu) is a redox-active micronutrient that is both essential and toxic.
    Its cellular homeostasis is critical for supporting cuproprotein maturation while
    avoiding excessive oxidative stress. The Cu importer CcoA is the prototype of
    the widespread CalT subfamily of the MFS-type transporters. Hence, understanding
    its molecular mechanism of function is significant. Here, we show that CcoA undergoes
    a thiol:disulfide oxidoreduction cycle, which is important for its Cu import activity.
article_number: e01567
article_processing_charge: No
article_type: original
author:
- first_name: Bahia
  full_name: Khalfaoui-Hassani, Bahia
  last_name: Khalfaoui-Hassani
- first_name: Petru Iulian
  full_name: Trasnea, Petru Iulian
  id: D560034C-10C4-11EA-ABF4-A4B43DDC885E
  last_name: Trasnea
- first_name: Stefan
  full_name: Steimle, Stefan
  last_name: Steimle
- first_name: Hans-Georg
  full_name: Koch, Hans-Georg
  last_name: Koch
- first_name: Fevzi
  full_name: Daldal, Fevzi
  last_name: Daldal
citation:
  ama: Khalfaoui-Hassani B, Trasnea PI, Steimle S, Koch H-G, Daldal F. Cysteine mutants
    of the major facilitator superfamily-type transporter CcoA provide insight into
    copper import. <i>mBio</i>. 2021;12(4). doi:<a href="https://doi.org/10.1128/mbio.01567-21">10.1128/mbio.01567-21</a>
  apa: Khalfaoui-Hassani, B., Trasnea, P. I., Steimle, S., Koch, H.-G., &#38; Daldal,
    F. (2021). Cysteine mutants of the major facilitator superfamily-type transporter
    CcoA provide insight into copper import. <i>MBio</i>. American Society for Microbiology.
    <a href="https://doi.org/10.1128/mbio.01567-21">https://doi.org/10.1128/mbio.01567-21</a>
  chicago: Khalfaoui-Hassani, Bahia, Petru Iulian Trasnea, Stefan Steimle, Hans-Georg
    Koch, and Fevzi Daldal. “Cysteine Mutants of the Major Facilitator Superfamily-Type
    Transporter CcoA Provide Insight into Copper Import.” <i>MBio</i>. American Society
    for Microbiology, 2021. <a href="https://doi.org/10.1128/mbio.01567-21">https://doi.org/10.1128/mbio.01567-21</a>.
  ieee: B. Khalfaoui-Hassani, P. I. Trasnea, S. Steimle, H.-G. Koch, and F. Daldal,
    “Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide
    insight into copper import,” <i>mBio</i>, vol. 12, no. 4. American Society for
    Microbiology, 2021.
  ista: Khalfaoui-Hassani B, Trasnea PI, Steimle S, Koch H-G, Daldal F. 2021. Cysteine
    mutants of the major facilitator superfamily-type transporter CcoA provide insight
    into copper import. mBio. 12(4), e01567.
  mla: Khalfaoui-Hassani, Bahia, et al. “Cysteine Mutants of the Major Facilitator
    Superfamily-Type Transporter CcoA Provide Insight into Copper Import.” <i>MBio</i>,
    vol. 12, no. 4, e01567, American Society for Microbiology, 2021, doi:<a href="https://doi.org/10.1128/mbio.01567-21">10.1128/mbio.01567-21</a>.
  short: B. Khalfaoui-Hassani, P.I. Trasnea, S. Steimle, H.-G. Koch, F. Daldal, MBio
    12 (2021).
date_created: 2024-04-03T07:59:04Z
date_published: 2021-08-31T00:00:00Z
date_updated: 2024-04-09T10:47:16Z
day: '31'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1128/mbio.01567-21
external_id:
  pmid:
  - '34281385'
file:
- access_level: open_access
  checksum: 2f6a57637cb3162eaeeb155a5b031e76
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T10:45:11Z
  date_updated: 2024-04-09T10:45:11Z
  file_id: '15306'
  file_name: 2021_mBio_KhalfaouiHassani.pdf
  file_size: 3383398
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T10:45:11Z
has_accepted_license: '1'
intvolume: '        12'
issue: '4'
keyword:
- Virology
- Microbiology
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: mBio
publication_identifier:
  issn:
  - 2150-7511
publication_status: published
publisher: American Society for Microbiology
quality_controlled: '1'
status: public
title: Cysteine mutants of the major facilitator superfamily-type transporter CcoA
  provide insight into copper import
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2021'
...
---
_id: '15275'
abstract:
- lang: eng
  text: In 1916, Schur introduced the Ramsey number r(3; m), which is the minimum
    integer n > 1 such that for any m-coloring of the edges of the complete graph
    Kn, there is a monochromatic copy of K3. He showed that r(3; m) ≤ O(m!), and a
    simple construction demonstrates that r(3; m) ≥ 2Ω(m). An old conjecture of Erdős
    states that r(3; m) = 2Θ(m). In this note, we prove the conjecture for m-colorings
    with bounded VC-dimension, that is, for m-colorings with the property that the
    set system induced by the neighborhoods of the vertices with respect to each color
    class has bounded VC-dimension.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: János
  full_name: Pach, János
  id: E62E3130-B088-11EA-B919-BF823C25FEA4
  last_name: Pach
- first_name: Andrew
  full_name: Suk, Andrew
  last_name: Suk
citation:
  ama: Fox J, Pach J, Suk A. Bounded VC-dimension implies the Schur-Erdős conjecture.
    <i>Combinatorica</i>. 2021;41(6):803-813. doi:<a href="https://doi.org/10.1007/s00493-021-4530-9">10.1007/s00493-021-4530-9</a>
  apa: Fox, J., Pach, J., &#38; Suk, A. (2021). Bounded VC-dimension implies the Schur-Erdős
    conjecture. <i>Combinatorica</i>. Springer Nature. <a href="https://doi.org/10.1007/s00493-021-4530-9">https://doi.org/10.1007/s00493-021-4530-9</a>
  chicago: Fox, Jacob, János Pach, and Andrew Suk. “Bounded VC-Dimension Implies the
    Schur-Erdős Conjecture.” <i>Combinatorica</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/s00493-021-4530-9">https://doi.org/10.1007/s00493-021-4530-9</a>.
  ieee: J. Fox, J. Pach, and A. Suk, “Bounded VC-dimension implies the Schur-Erdős
    conjecture,” <i>Combinatorica</i>, vol. 41, no. 6. Springer Nature, pp. 803–813,
    2021.
  ista: Fox J, Pach J, Suk A. 2021. Bounded VC-dimension implies the Schur-Erdős conjecture.
    Combinatorica. 41(6), 803–813.
  mla: Fox, Jacob, et al. “Bounded VC-Dimension Implies the Schur-Erdős Conjecture.”
    <i>Combinatorica</i>, vol. 41, no. 6, Springer Nature, 2021, pp. 803–13, doi:<a
    href="https://doi.org/10.1007/s00493-021-4530-9">10.1007/s00493-021-4530-9</a>.
  short: J. Fox, J. Pach, A. Suk, Combinatorica 41 (2021) 803–813.
date_created: 2024-04-03T07:59:57Z
date_published: 2021-11-20T00:00:00Z
date_updated: 2024-04-09T10:40:08Z
day: '20'
department:
- _id: HeEd
doi: 10.1007/s00493-021-4530-9
external_id:
  arxiv:
  - '1912.02342'
intvolume: '        41'
issue: '6'
keyword:
- Computational Mathematics
- Discrete Mathematics and Combinatorics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1912.02342
month: '11'
oa: 1
oa_version: Preprint
page: 803-813
publication: Combinatorica
publication_identifier:
  eissn:
  - 1439-6912
  issn:
  - 0209-9683
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Bounded VC-dimension implies the Schur-Erdős conjecture
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 41
year: '2021'
...
---
_id: '15276'
abstract:
- lang: eng
  text: Biotrophic plant pathogens secrete effector proteins to manipulate the host
    physiology. Effectors suppress defenses and induce an environment favorable to
    disease development. Sequence-based prediction of effector function is impeded
    by their rapid evolution rate. In the maize pathogen <jats:italic>Ustilago maydis</jats:italic>,
    effector-coding genes frequently organize in clusters. Here we describe the functional
    characterization of the <jats:italic>pleiades</jats:italic>, a cluster of ten
    effector genes, by analyzing the micro- and macroscopic phenotype of the cluster
    deletion and expressing these proteins <jats:italic>in planta</jats:italic>. Deletion
    of the <jats:italic>pleiades</jats:italic> leads to strongly impaired virulence
    and accumulation of reactive oxygen species (ROS) in infected tissue. Eight of
    the Pleiades suppress the production of ROS upon perception of pathogen associated
    molecular patterns (PAMPs). Although functionally redundant, the Pleiades target
    different host components. The paralogs Taygeta1 and Merope1 suppress ROS production
    in either the cytoplasm or nucleus, respectively. Merope1 targets and promotes
    the auto-ubiquitination activity of RFI2, a conserved family of E3 ligases that
    regulates the production of PAMP-triggered ROS burst in plants.
article_number: e1009641
article_processing_charge: Yes
article_type: original
author:
- first_name: Fernando
  full_name: Navarrete, Fernando
  last_name: Navarrete
- first_name: Nenad
  full_name: Grujic, Nenad
  last_name: Grujic
- first_name: Alexandra
  full_name: Stirnberg, Alexandra
  last_name: Stirnberg
- first_name: Indira
  full_name: Saado, Indira
  last_name: Saado
- first_name: David
  full_name: Aleksza, David
  last_name: Aleksza
- first_name: Michelle C
  full_name: Gallei, Michelle C
  id: 35A03822-F248-11E8-B48F-1D18A9856A87
  last_name: Gallei
  orcid: 0000-0003-1286-7368
- first_name: Hazem
  full_name: Adi, Hazem
  last_name: Adi
- first_name: André
  full_name: Alcântara, André
  last_name: Alcântara
- first_name: Mamoona
  full_name: Khan, Mamoona
  last_name: Khan
- first_name: Janos
  full_name: Bindics, Janos
  last_name: Bindics
- first_name: Marco
  full_name: Trujillo, Marco
  last_name: Trujillo
- first_name: Armin
  full_name: Djamei, Armin
  last_name: Djamei
citation:
  ama: Navarrete F, Grujic N, Stirnberg A, et al. The Pleiades are a cluster of fungal
    effectors that inhibit host defenses. <i>PLOS Pathogens</i>. 2021;17(6). doi:<a
    href="https://doi.org/10.1371/journal.ppat.1009641">10.1371/journal.ppat.1009641</a>
  apa: Navarrete, F., Grujic, N., Stirnberg, A., Saado, I., Aleksza, D., Gallei, M.
    C., … Djamei, A. (2021). The Pleiades are a cluster of fungal effectors that inhibit
    host defenses. <i>PLOS Pathogens</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.ppat.1009641">https://doi.org/10.1371/journal.ppat.1009641</a>
  chicago: Navarrete, Fernando, Nenad Grujic, Alexandra Stirnberg, Indira Saado, David
    Aleksza, Michelle C Gallei, Hazem Adi, et al. “The Pleiades Are a Cluster of Fungal
    Effectors That Inhibit Host Defenses.” <i>PLOS Pathogens</i>. Public Library of
    Science, 2021. <a href="https://doi.org/10.1371/journal.ppat.1009641">https://doi.org/10.1371/journal.ppat.1009641</a>.
  ieee: F. Navarrete <i>et al.</i>, “The Pleiades are a cluster of fungal effectors
    that inhibit host defenses,” <i>PLOS Pathogens</i>, vol. 17, no. 6. Public Library
    of Science, 2021.
  ista: Navarrete F, Grujic N, Stirnberg A, Saado I, Aleksza D, Gallei MC, Adi H,
    Alcântara A, Khan M, Bindics J, Trujillo M, Djamei A. 2021. The Pleiades are a
    cluster of fungal effectors that inhibit host defenses. PLOS Pathogens. 17(6),
    e1009641.
  mla: Navarrete, Fernando, et al. “The Pleiades Are a Cluster of Fungal Effectors
    That Inhibit Host Defenses.” <i>PLOS Pathogens</i>, vol. 17, no. 6, e1009641,
    Public Library of Science, 2021, doi:<a href="https://doi.org/10.1371/journal.ppat.1009641">10.1371/journal.ppat.1009641</a>.
  short: F. Navarrete, N. Grujic, A. Stirnberg, I. Saado, D. Aleksza, M.C. Gallei,
    H. Adi, A. Alcântara, M. Khan, J. Bindics, M. Trujillo, A. Djamei, PLOS Pathogens
    17 (2021).
date_created: 2024-04-03T08:00:34Z
date_published: 2021-06-24T00:00:00Z
date_updated: 2024-04-09T10:26:12Z
day: '24'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1371/journal.ppat.1009641
external_id:
  pmid:
  - '34166468'
file:
- access_level: open_access
  checksum: ab8428291a0c14607c4ea5656c029cff
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T10:24:43Z
  date_updated: 2024-04-09T10:24:43Z
  file_id: '15305'
  file_name: 2021_PlosPathogens_Navarrete.pdf
  file_size: 2616563
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T10:24:43Z
has_accepted_license: '1'
intvolume: '        17'
issue: '6'
keyword:
- Virology
- Genetics
- Molecular Biology
- Immunology
- Microbiology
- Parasitology
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Pathogens
publication_identifier:
  issn:
  - 1553-7374
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: The Pleiades are a cluster of fungal effectors that inhibit host defenses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2021'
...
---
_id: '15277'
abstract:
- lang: eng
  text: Alternative splicing generates multiple transcript and protein isoforms from
    a single gene and controls transcript intracellular localization and stability
    by coupling to mRNA export and nonsense-mediated mRNA decay (NMD). RNA interference
    (RNAi) is a potent mechanism to modulate gene expression. However, its interactions
    with alternative splicing are poorly understood. We used artificial microRNAs
    (amiRNAs, also termed shRNAmiR) to knockdown all splice variants of selected target
    genes in Arabidopsis thaliana. We found that splice variants, which vary by their
    protein-coding capacity, subcellular localization and sensitivity to NMD, are
    affected differentially by an amiRNA, although all of them contain the target
    site. Particular transcript isoforms escape amiRNA-mediated degradation due to
    their nuclear localization. The nuclear and NMD-sensitive isoforms mask RNAi action
    in alternatively spliced genes. Interestingly, Arabidopsis SPL genes, which undergo
    alternative splicing and are targets of miR156, are regulated in the same manner.
    Moreover, similar results were obtained in mammalian cells using siRNAs, indicating
    cross-kingdom conservation of these interactions among RNAi and splicing isoforms.
    Furthermore, we report that amiRNA can trigger artificial alternative splicing,
    thus expanding the RNAi functional repertoire. Our findings unveil novel interactions
    between different post-transcriptional processes in defining transcript fates
    and regulating gene expression.
article_processing_charge: No
article_type: original
author:
- first_name: Armin
  full_name: Fuchs, Armin
  last_name: Fuchs
- first_name: Stefan
  full_name: Riegler, Stefan
  last_name: Riegler
- first_name: Zahra
  full_name: Ayatollahi, Zahra
  last_name: Ayatollahi
- first_name: Nicola
  full_name: Cavallari, Nicola
  id: 457160E6-F248-11E8-B48F-1D18A9856A87
  last_name: Cavallari
- first_name: Luciana E
  full_name: Giono, Luciana E
  last_name: Giono
- first_name: Barbara A
  full_name: Nimeth, Barbara A
  last_name: Nimeth
- first_name: Krishna V
  full_name: Mutanwad, Krishna V
  last_name: Mutanwad
- first_name: Alois
  full_name: Schweighofer, Alois
  last_name: Schweighofer
- first_name: Doris
  full_name: Lucyshyn, Doris
  last_name: Lucyshyn
- first_name: Andrea
  full_name: Barta, Andrea
  last_name: Barta
- first_name: Ezequiel
  full_name: Petrillo, Ezequiel
  last_name: Petrillo
- first_name: Maria
  full_name: Kalyna, Maria
  last_name: Kalyna
citation:
  ama: 'Fuchs A, Riegler S, Ayatollahi Z, et al. Targeting alternative splicing by
    RNAi: From the differential impact on splice variants to triggering artificial
    pre-mRNA splicing. <i>Nucleic Acids Research</i>. 2021;49(2):1133-1151. doi:<a
    href="https://doi.org/10.1093/nar/gkaa1260">10.1093/nar/gkaa1260</a>'
  apa: 'Fuchs, A., Riegler, S., Ayatollahi, Z., Cavallari, N., Giono, L. E., Nimeth,
    B. A., … Kalyna, M. (2021). Targeting alternative splicing by RNAi: From the differential
    impact on splice variants to triggering artificial pre-mRNA splicing. <i>Nucleic
    Acids Research</i>. Oxford University Press. <a href="https://doi.org/10.1093/nar/gkaa1260">https://doi.org/10.1093/nar/gkaa1260</a>'
  chicago: 'Fuchs, Armin, Stefan Riegler, Zahra Ayatollahi, Nicola Cavallari, Luciana
    E Giono, Barbara A Nimeth, Krishna V Mutanwad, et al. “Targeting Alternative Splicing
    by RNAi: From the Differential Impact on Splice Variants to Triggering Artificial
    Pre-MRNA Splicing.” <i>Nucleic Acids Research</i>. Oxford University Press, 2021.
    <a href="https://doi.org/10.1093/nar/gkaa1260">https://doi.org/10.1093/nar/gkaa1260</a>.'
  ieee: 'A. Fuchs <i>et al.</i>, “Targeting alternative splicing by RNAi: From the
    differential impact on splice variants to triggering artificial pre-mRNA splicing,”
    <i>Nucleic Acids Research</i>, vol. 49, no. 2. Oxford University Press, pp. 1133–1151,
    2021.'
  ista: 'Fuchs A, Riegler S, Ayatollahi Z, Cavallari N, Giono LE, Nimeth BA, Mutanwad
    KV, Schweighofer A, Lucyshyn D, Barta A, Petrillo E, Kalyna M. 2021. Targeting
    alternative splicing by RNAi: From the differential impact on splice variants
    to triggering artificial pre-mRNA splicing. Nucleic Acids Research. 49(2), 1133–1151.'
  mla: 'Fuchs, Armin, et al. “Targeting Alternative Splicing by RNAi: From the Differential
    Impact on Splice Variants to Triggering Artificial Pre-MRNA Splicing.” <i>Nucleic
    Acids Research</i>, vol. 49, no. 2, Oxford University Press, 2021, pp. 1133–51,
    doi:<a href="https://doi.org/10.1093/nar/gkaa1260">10.1093/nar/gkaa1260</a>.'
  short: A. Fuchs, S. Riegler, Z. Ayatollahi, N. Cavallari, L.E. Giono, B.A. Nimeth,
    K.V. Mutanwad, A. Schweighofer, D. Lucyshyn, A. Barta, E. Petrillo, M. Kalyna,
    Nucleic Acids Research 49 (2021) 1133–1151.
date_created: 2024-04-03T08:02:09Z
date_published: 2021-01-25T00:00:00Z
date_updated: 2024-04-09T10:16:40Z
day: '25'
ddc:
- '570'
department:
- _id: EvBe
doi: 10.1093/nar/gkaa1260
external_id:
  pmid:
  - '33406240'
file:
- access_level: open_access
  checksum: d3c90660759a5d34ad43ba1def130462
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T10:14:39Z
  date_updated: 2024-04-09T10:14:39Z
  file_id: '15304'
  file_name: 2021_NucleicAcidsRes_Fuchs.pdf
  file_size: 6539791
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T10:14:39Z
has_accepted_license: '1'
intvolume: '        49'
issue: '2'
keyword:
- Genetics
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 1133-1151
pmid: 1
publication: Nucleic Acids Research
publication_identifier:
  eissn:
  - 1362-4962
  issn:
  - 0305-1048
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: 'Targeting alternative splicing by RNAi: From the differential impact on splice
  variants to triggering artificial pre-mRNA splicing'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 49
year: '2021'
...
---
_id: '15278'
abstract:
- lang: eng
  text: ‘Dysbiosis’ of the adult gut microbiota, in response to challenges such as
    infection, altered diet, stress, and antibiotics treatment has been recently linked
    to pathological alteration of brain function and behavior. Moreover, gut microbiota
    composition constantly controls microglia maturation, as revealed by morphological
    observations and gene expression analysis. However, it is unclear whether microglia
    functional properties and crosstalk with neurons, known to shape and modulate
    synaptic development and function, are influenced by the gut microbiota. Here,
    we investigated how antibiotic-mediated alteration of the gut microbiota influences
    microglial and neuronal functions in adult mice hippocampus. Hippocampal microglia
    from adult mice treated with oral antibiotics exhibited increased microglia density,
    altered basal patrolling activity, and impaired process rearrangement in response
    to damage. Patch clamp recordings at CA3-CA1 synapses revealed that antibiotics
    treatment alters neuronal functions, reducing spontaneous postsynaptic glutamatergic
    currents and decreasing synaptic connectivity, without reducing dendritic spines
    density. Antibiotics treatment was unable to modulate synaptic function in CX3CR1-deficient
    mice, pointing to an involvement of microglia–neuron crosstalk through the CX3CL1/CX3CR1
    axis in the effect of dysbiosis on neuronal functions. Together, our findings
    show that antibiotic alteration of gut microbiota impairs synaptic efficacy, suggesting
    that CX3CL1/CX3CR1 signaling supporting microglia is a major player in in the
    gut–brain axis, and in particular in the gut microbiota-to-neuron communication
    pathway.
article_number: '2648'
article_processing_charge: Yes
article_type: original
author:
- first_name: Federica
  full_name: Cordella, Federica
  last_name: Cordella
- first_name: Caterina
  full_name: Sanchini, Caterina
  last_name: Sanchini
- first_name: Maria
  full_name: Rosito, Maria
  last_name: Rosito
- first_name: Laura
  full_name: Ferrucci, Laura
  last_name: Ferrucci
- first_name: Natalia
  full_name: Pediconi, Natalia
  last_name: Pediconi
- first_name: Barbara
  full_name: Cortese, Barbara
  last_name: Cortese
- first_name: Francesca
  full_name: Guerrieri, Francesca
  last_name: Guerrieri
- first_name: Giuseppe Rubens
  full_name: Pascucci, Giuseppe Rubens
  last_name: Pascucci
- first_name: Fabrizio
  full_name: Antonangeli, Fabrizio
  last_name: Antonangeli
- first_name: Giovanna
  full_name: Peruzzi, Giovanna
  last_name: Peruzzi
- first_name: Maria
  full_name: Giubettini, Maria
  last_name: Giubettini
- first_name: Bernadette
  full_name: Basilico, Bernadette
  id: 36035796-5ACA-11E9-A75E-7AF2E5697425
  last_name: Basilico
  orcid: 0000-0003-1843-3173
- first_name: Francesca
  full_name: Pagani, Francesca
  last_name: Pagani
- first_name: Alfonso
  full_name: Grimaldi, Alfonso
  last_name: Grimaldi
- first_name: Giuseppina
  full_name: D’Alessandro, Giuseppina
  last_name: D’Alessandro
- first_name: Cristina
  full_name: Limatola, Cristina
  last_name: Limatola
- first_name: Davide
  full_name: Ragozzino, Davide
  last_name: Ragozzino
- first_name: Silvia
  full_name: Di Angelantonio, Silvia
  last_name: Di Angelantonio
citation:
  ama: Cordella F, Sanchini C, Rosito M, et al. Antibiotics treatment modulates microglia–synapses
    interaction. <i>Cells</i>. 2021;10(10). doi:<a href="https://doi.org/10.3390/cells10102648">10.3390/cells10102648</a>
  apa: Cordella, F., Sanchini, C., Rosito, M., Ferrucci, L., Pediconi, N., Cortese,
    B., … Di Angelantonio, S. (2021). Antibiotics treatment modulates microglia–synapses
    interaction. <i>Cells</i>. MDPI. <a href="https://doi.org/10.3390/cells10102648">https://doi.org/10.3390/cells10102648</a>
  chicago: Cordella, Federica, Caterina Sanchini, Maria Rosito, Laura Ferrucci, Natalia
    Pediconi, Barbara Cortese, Francesca Guerrieri, et al. “Antibiotics Treatment
    Modulates Microglia–Synapses Interaction.” <i>Cells</i>. MDPI, 2021. <a href="https://doi.org/10.3390/cells10102648">https://doi.org/10.3390/cells10102648</a>.
  ieee: F. Cordella <i>et al.</i>, “Antibiotics treatment modulates microglia–synapses
    interaction,” <i>Cells</i>, vol. 10, no. 10. MDPI, 2021.
  ista: Cordella F, Sanchini C, Rosito M, Ferrucci L, Pediconi N, Cortese B, Guerrieri
    F, Pascucci GR, Antonangeli F, Peruzzi G, Giubettini M, Basilico B, Pagani F,
    Grimaldi A, D’Alessandro G, Limatola C, Ragozzino D, Di Angelantonio S. 2021.
    Antibiotics treatment modulates microglia–synapses interaction. Cells. 10(10),
    2648.
  mla: Cordella, Federica, et al. “Antibiotics Treatment Modulates Microglia–Synapses
    Interaction.” <i>Cells</i>, vol. 10, no. 10, 2648, MDPI, 2021, doi:<a href="https://doi.org/10.3390/cells10102648">10.3390/cells10102648</a>.
  short: F. Cordella, C. Sanchini, M. Rosito, L. Ferrucci, N. Pediconi, B. Cortese,
    F. Guerrieri, G.R. Pascucci, F. Antonangeli, G. Peruzzi, M. Giubettini, B. Basilico,
    F. Pagani, A. Grimaldi, G. D’Alessandro, C. Limatola, D. Ragozzino, S. Di Angelantonio,
    Cells 10 (2021).
date_created: 2024-04-03T08:02:52Z
date_published: 2021-10-04T00:00:00Z
date_updated: 2024-04-09T08:53:23Z
day: '04'
ddc:
- '610'
department:
- _id: GaNo
doi: 10.3390/cells10102648
external_id:
  pmid:
  - '34685628'
file:
- access_level: open_access
  checksum: 1a3b251ce82e2b9474b852d2abe5bb03
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T08:51:22Z
  date_updated: 2024-04-09T08:51:22Z
  file_id: '15303'
  file_name: 2021_Cells_Cordella.pdf
  file_size: 2196672
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T08:51:22Z
has_accepted_license: '1'
intvolume: '        10'
issue: '10'
keyword:
- General Medicine
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Cells
publication_identifier:
  issn:
  - 2073-4409
publication_status: published
publisher: MDPI
quality_controlled: '1'
status: public
title: Antibiotics treatment modulates microglia–synapses interaction
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2021'
...
---
_id: '15283'
article_processing_charge: No
article_type: original
author:
- first_name: William
  full_name: Nicolas, William
  last_name: Nicolas
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Elliot
  full_name: Meyerowitz, Elliot
  last_name: Meyerowitz
- first_name: Grant
  full_name: Jensen, Grant
  last_name: Jensen
citation:
  ama: Nicolas W, Fäßler F, Meyerowitz E, Jensen G. Peaking into the plant cell wall
    using cryo-FIB milling and electron cryo-tomography. <i>Microscopy and Microanalysis</i>.
    2021;27(S1):3024-3026. doi:<a href="https://doi.org/10.1017/s1431927621010503">10.1017/s1431927621010503</a>
  apa: Nicolas, W., Fäßler, F., Meyerowitz, E., &#38; Jensen, G. (2021). Peaking into
    the plant cell wall using cryo-FIB milling and electron cryo-tomography. <i>Microscopy
    and Microanalysis</i>. Oxford University Press. <a href="https://doi.org/10.1017/s1431927621010503">https://doi.org/10.1017/s1431927621010503</a>
  chicago: Nicolas, William, Florian Fäßler, Elliot Meyerowitz, and Grant Jensen.
    “Peaking into the Plant Cell Wall Using Cryo-FIB Milling and Electron Cryo-Tomography.”
    <i>Microscopy and Microanalysis</i>. Oxford University Press, 2021. <a href="https://doi.org/10.1017/s1431927621010503">https://doi.org/10.1017/s1431927621010503</a>.
  ieee: W. Nicolas, F. Fäßler, E. Meyerowitz, and G. Jensen, “Peaking into the plant
    cell wall using cryo-FIB milling and electron cryo-tomography,” <i>Microscopy
    and Microanalysis</i>, vol. 27, no. S1. Oxford University Press, pp. 3024–3026,
    2021.
  ista: Nicolas W, Fäßler F, Meyerowitz E, Jensen G. 2021. Peaking into the plant
    cell wall using cryo-FIB milling and electron cryo-tomography. Microscopy and
    Microanalysis. 27(S1), 3024–3026.
  mla: Nicolas, William, et al. “Peaking into the Plant Cell Wall Using Cryo-FIB Milling
    and Electron Cryo-Tomography.” <i>Microscopy and Microanalysis</i>, vol. 27, no.
    S1, Oxford University Press, 2021, pp. 3024–26, doi:<a href="https://doi.org/10.1017/s1431927621010503">10.1017/s1431927621010503</a>.
  short: W. Nicolas, F. Fäßler, E. Meyerowitz, G. Jensen, Microscopy and Microanalysis
    27 (2021) 3024–3026.
date_created: 2024-04-03T08:57:23Z
date_published: 2021-08-01T00:00:00Z
date_updated: 2024-04-09T07:55:56Z
day: '01'
department:
- _id: FlSc
doi: 10.1017/s1431927621010503
intvolume: '        27'
issue: S1
keyword:
- Instrumentation
language:
- iso: eng
month: '08'
oa_version: None
page: 3024-3026
publication: Microscopy and Microanalysis
publication_identifier:
  eissn:
  - 1435-8115
  issn:
  - 1431-9276
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 27
year: '2021'
...
---
_id: '15284'
abstract:
- lang: eng
  text: "RevTerm is a static analysis tool for proving non-termination of integer
    C programs (possibly with non-determinism). RevTerm is an implementation of our
    method for non-termination proving presented in the paper “Proving Non-termination
    by Program Reversal”.\r\n\r\n"
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Ehsan Kafshdar
  full_name: Goharshady, Ehsan Kafshdar
  last_name: Goharshady
- first_name: Petr
  full_name: Novotný, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotný
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
citation:
  ama: Chatterjee K, Goharshady EK, Novotný P, Zikelic D. RevTerm. 2021. doi:<a href="https://doi.org/10.1145/3410304">10.1145/3410304</a>
  apa: Chatterjee, K., Goharshady, E. K., Novotný, P., &#38; Zikelic, D. (2021). RevTerm.
    Association for Computing Machinery. <a href="https://doi.org/10.1145/3410304">https://doi.org/10.1145/3410304</a>
  chicago: Chatterjee, Krishnendu, Ehsan Kafshdar Goharshady, Petr Novotný, and Dorde
    Zikelic. “RevTerm.” Association for Computing Machinery, 2021. <a href="https://doi.org/10.1145/3410304">https://doi.org/10.1145/3410304</a>.
  ieee: K. Chatterjee, E. K. Goharshady, P. Novotný, and D. Zikelic, “RevTerm.” Association
    for Computing Machinery, 2021.
  ista: Chatterjee K, Goharshady EK, Novotný P, Zikelic D. 2021. RevTerm, Association
    for Computing Machinery, <a href="https://doi.org/10.1145/3410304">10.1145/3410304</a>.
  mla: Chatterjee, Krishnendu, et al. <i>RevTerm</i>. Association for Computing Machinery,
    2021, doi:<a href="https://doi.org/10.1145/3410304">10.1145/3410304</a>.
  short: K. Chatterjee, E.K. Goharshady, P. Novotný, D. Zikelic, (2021).
corr_author: '1'
date_created: 2024-04-03T09:00:42Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2025-04-15T06:25:30Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1145/3410304
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3410304
month: '06'
oa: 1
oa_version: Published Version
publisher: Association for Computing Machinery
related_material:
  record:
  - id: '9644'
    relation: used_in_publication
    status: public
status: public
title: RevTerm
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '15285'
abstract:
- lang: eng
  text: Ever since the first publication of the standard communication protocol for
    computer-assisted electrocardiography (SCP-ECG), prENV 1064, in 1993, by the European
    Committee for Standardization (CEN), SCP-ECG has become a leading example in health
    informatics, enabling open, secure, and well-documented digital data exchange
    at a low cost, for quick and efficient cardiovascular disease detection and management.
    Based on the experiences gained, since the 1970s, in computerized electrocardiology,
    and on the results achieved by the pioneering, international cooperative research
    on common standards for quantitative electrocardiography (CSE), SCP-ECG was designed,
    from the beginning, to empower personalized medicine, thanks to serial ECG analysis.
    The fundamental concept behind SCP-ECG is to convey the necessary information
    for ECG re-analysis, serial comparison, and interpretation, and to structure the
    ECG data and metadata in sections that are mostly optional in order to fit all
    use cases. SCP-ECG is open to the storage of the ECG signal and ECG measurement
    data, whatever the ECG recording modality or computation method, and can store
    the over-reading trails and ECG annotations, as well as any computerized or medical
    interpretation reports. Only the encoding syntax and the semantics of the ECG
    descriptors and of the diagnosis codes are standardized. We present all of the
    landmarks in the development and publication of SCP-ECG, from the early 1990s
    to the 2009 International Organization for Standardization (ISO) SCP-ECG standards,
    including the latest version published by CEN in 2020, which now encompasses rest
    and stress ECGs, Holter recordings, and protocol-based trials.
acknowledgement: This research received no external funding. The authors thank the
  large number of researchers, engineers, cardiologists, and clinicians from academia,
  industry, and normalization organizations who contributed to the development and
  testing of the SCP-ECG standards.
article_processing_charge: Yes
article_type: review
author:
- first_name: Paul
  full_name: Rubel, Paul
  last_name: Rubel
- first_name: Jocelyne
  full_name: Fayn, Jocelyne
  last_name: Fayn
- first_name: Peter W.
  full_name: Macfarlane, Peter W.
  last_name: Macfarlane
- first_name: Danilo
  full_name: Pani, Danilo
  last_name: Pani
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: Alpo
  full_name: Värri, Alpo
  last_name: Värri
citation:
  ama: 'Rubel P, Fayn J, Macfarlane PW, Pani D, Schlögl A, Värri A. The history and
    challenges of SCP-ECG: The standard communication protocol for computer-assisted
    electrocardiography. <i>Hearts</i>. 2021;2(3):384-409. doi:<a href="https://doi.org/10.3390/hearts2030031">10.3390/hearts2030031</a>'
  apa: 'Rubel, P., Fayn, J., Macfarlane, P. W., Pani, D., Schlögl, A., &#38; Värri,
    A. (2021). The history and challenges of SCP-ECG: The standard communication protocol
    for computer-assisted electrocardiography. <i>Hearts</i>. MDPI. <a href="https://doi.org/10.3390/hearts2030031">https://doi.org/10.3390/hearts2030031</a>'
  chicago: 'Rubel, Paul, Jocelyne Fayn, Peter W. Macfarlane, Danilo Pani, Alois Schlögl,
    and Alpo Värri. “The History and Challenges of SCP-ECG: The Standard Communication
    Protocol for Computer-Assisted Electrocardiography.” <i>Hearts</i>. MDPI, 2021.
    <a href="https://doi.org/10.3390/hearts2030031">https://doi.org/10.3390/hearts2030031</a>.'
  ieee: 'P. Rubel, J. Fayn, P. W. Macfarlane, D. Pani, A. Schlögl, and A. Värri, “The
    history and challenges of SCP-ECG: The standard communication protocol for computer-assisted
    electrocardiography,” <i>Hearts</i>, vol. 2, no. 3. MDPI, pp. 384–409, 2021.'
  ista: 'Rubel P, Fayn J, Macfarlane PW, Pani D, Schlögl A, Värri A. 2021. The history
    and challenges of SCP-ECG: The standard communication protocol for computer-assisted
    electrocardiography. Hearts. 2(3), 384–409.'
  mla: 'Rubel, Paul, et al. “The History and Challenges of SCP-ECG: The Standard Communication
    Protocol for Computer-Assisted Electrocardiography.” <i>Hearts</i>, vol. 2, no.
    3, MDPI, 2021, pp. 384–409, doi:<a href="https://doi.org/10.3390/hearts2030031">10.3390/hearts2030031</a>.'
  short: P. Rubel, J. Fayn, P.W. Macfarlane, D. Pani, A. Schlögl, A. Värri, Hearts
    2 (2021) 384–409.
date_created: 2024-04-03T09:03:31Z
date_published: 2021-08-24T00:00:00Z
date_updated: 2024-04-09T06:51:50Z
day: '24'
ddc:
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department:
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title: 'The history and challenges of SCP-ECG: The standard communication protocol
  for computer-assisted electrocardiography'
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abstract:
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  text: The present thesis is concerned with the derivation of weak-strong uniqueness
    principles for curvature driven interface evolution problems not satisfying a
    comparison principle. The specific examples being treated are two-phase Navier-Stokes
    flow with surface tension, modeling the evolution of two incompressible, viscous
    and immiscible fluids separated by a sharp interface, and multiphase mean curvature
    flow, which serves as an idealized model for the motion of grain boundaries in
    an annealing polycrystalline material. Our main results - obtained in joint works
    with Julian Fischer, Tim Laux and Theresa M. Simon - state that prior to the formation
    of geometric singularities due to topology changes, the weak solution concept
    of Abels (Interfaces Free Bound. 9, 2007) to two-phase Navier-Stokes flow with
    surface tension and the weak solution concept of Laux and Otto (Calc. Var. Partial
    Differential Equations 55, 2016) to multiphase mean curvature flow (for networks
    in R^2 or double bubbles in R^3) represents the unique solution to these interface
    evolution problems within the class of classical solutions, respectively. To the
    best of the author's knowledge, for interface evolution problems not admitting
    a geometric comparison principle the derivation of a weak-strong uniqueness principle
    represented an open problem, so that the works contained in the present thesis
    constitute the first positive results in this direction. The key ingredient of
    our approach consists of the introduction of a novel concept of relative entropies
    for a class of curvature driven interface evolution problems, for which the associated
    energy contains an interfacial contribution being proportional to the surface
    area of the evolving (network of) interface(s). The interfacial part of the relative
    entropy gives sufficient control on the interface error between a weak and a classical
    solution, and its time evolution can be computed, at least in principle, for any
    energy dissipating weak solution concept. A resulting stability estimate for the
    relative entropy essentially entails the above mentioned weak-strong uniqueness
    principles. The present thesis contains a detailed introduction to our relative
    entropy approach, which in particular highlights potential applications to other
    problems in curvature driven interface evolution not treated in this thesis.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Sebastian
  full_name: Hensel, Sebastian
  id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
  last_name: Hensel
  orcid: 0000-0001-7252-8072
citation:
  ama: 'Hensel S. Curvature driven interface evolution: Uniqueness properties of weak
    solution concepts. 2021. doi:<a href="https://doi.org/10.15479/at:ista:10007">10.15479/at:ista:10007</a>'
  apa: 'Hensel, S. (2021). <i>Curvature driven interface evolution: Uniqueness properties
    of weak solution concepts</i>. Institute of Science and Technology Austria. <a
    href="https://doi.org/10.15479/at:ista:10007">https://doi.org/10.15479/at:ista:10007</a>'
  chicago: 'Hensel, Sebastian. “Curvature Driven Interface Evolution: Uniqueness Properties
    of Weak Solution Concepts.” Institute of Science and Technology Austria, 2021.
    <a href="https://doi.org/10.15479/at:ista:10007">https://doi.org/10.15479/at:ista:10007</a>.'
  ieee: 'S. Hensel, “Curvature driven interface evolution: Uniqueness properties of
    weak solution concepts,” Institute of Science and Technology Austria, 2021.'
  ista: 'Hensel S. 2021. Curvature driven interface evolution: Uniqueness properties
    of weak solution concepts. Institute of Science and Technology Austria.'
  mla: 'Hensel, Sebastian. <i>Curvature Driven Interface Evolution: Uniqueness Properties
    of Weak Solution Concepts</i>. Institute of Science and Technology Austria, 2021,
    doi:<a href="https://doi.org/10.15479/at:ista:10007">10.15479/at:ista:10007</a>.'
  short: 'S. Hensel, Curvature Driven Interface Evolution: Uniqueness Properties of
    Weak Solution Concepts, Institute of Science and Technology Austria, 2021.'
corr_author: '1'
date_created: 2021-09-13T11:12:34Z
date_published: 2021-09-14T00:00:00Z
date_updated: 2026-04-08T07:01:01Z
day: '14'
ddc:
- '515'
degree_awarded: PhD
department:
- _id: GradSch
- _id: JuFi
doi: 10.15479/at:ista:10007
ec_funded: 1
file:
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  date_updated: 2021-09-15T14:37:30Z
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  file_id: '10014'
  file_name: thesis_final_Hensel.pdf
  file_size: 6583638
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file_date_updated: 2021-09-15T14:37:30Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '300'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: 0aa76401-070f-11eb-9043-b5bb049fa26d
  call_identifier: H2020
  grant_number: '948819'
  name: Bridging Scales in Random Materials
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
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    relation: part_of_dissertation
    status: public
  - id: '10013'
    relation: part_of_dissertation
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    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
title: 'Curvature driven interface evolution: Uniqueness properties of weak solution
  concepts'
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2021'
...
