---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '20839'
abstract:
- lang: eng
text: For every couple of Hausdorff functions ψ and φ verifying some mild assumptions,
there exists a compact subset K of the Baire space such that the φ-Hausdorff measure
and the ψ-packing measure on K are both finite and positive. Such examples are
then embedded in any infinite dimensional Banach space to answer positively a
question of Fan on the existence of metric spaces with arbitrary scales.
article_processing_charge: Yes
article_type: original
author:
- first_name: Mathieu
full_name: Helfter, Mathieu
id: 7d296fbe-e2c6-11ee-84d3-d5c2945f9a57
last_name: Helfter
citation:
ama: Helfter M. Sets with arbitrary Hausdorff and packing scales in infinite dimensional
Banach spaces. Journal of Fractal Geometry. 2025. doi:10.4171/jfg/177
apa: Helfter, M. (2025). Sets with arbitrary Hausdorff and packing scales in infinite
dimensional Banach spaces. Journal of Fractal Geometry. EMS Press. https://doi.org/10.4171/jfg/177
chicago: Helfter, Mathieu. “Sets with Arbitrary Hausdorff and Packing Scales in
Infinite Dimensional Banach Spaces.” Journal of Fractal Geometry. EMS Press,
2025. https://doi.org/10.4171/jfg/177.
ieee: M. Helfter, “Sets with arbitrary Hausdorff and packing scales in infinite
dimensional Banach spaces,” Journal of Fractal Geometry. EMS Press, 2025.
ista: Helfter M. 2025. Sets with arbitrary Hausdorff and packing scales in infinite
dimensional Banach spaces. Journal of Fractal Geometry.
mla: Helfter, Mathieu. “Sets with Arbitrary Hausdorff and Packing Scales in Infinite
Dimensional Banach Spaces.” Journal of Fractal Geometry, EMS Press, 2025,
doi:10.4171/jfg/177.
short: M. Helfter, Journal of Fractal Geometry (2025).
corr_author: '1'
date_created: 2025-12-19T10:15:37Z
date_published: 2025-11-07T00:00:00Z
date_updated: 2026-06-18T18:26:33Z
day: '07'
ddc:
- '500'
department:
- _id: VaKa
doi: 10.4171/jfg/177
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.4171/jfg/177
month: '11'
oa: 1
oa_version: Published Version
publication: Journal of Fractal Geometry
publication_identifier:
eissn:
- 2308-1317
issn:
- 2308-1309
publication_status: epub_ahead
publisher: EMS Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sets with arbitrary Hausdorff and packing scales in infinite dimensional Banach
spaces
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
_id: '20842'
abstract:
- lang: eng
text: Probing the possibility of entanglement generation through gravity offers
a path to tackle the question of whether gravitational fields possess a quantum
mechanical nature. A potential realization necessitates systems with low-frequency
dynamics at an optimal mass scale, for which the microgram-to-milligram range
is a strong contender. Here, after refining a figure-of-merit for the problem,
we present a 1-milligram torsional pendulum operating at 18 Hz. We demonstrate
laser cooling its motion from room temperature to 240~microkelvins, surpassing
by over 20-fold the coldest motions attained for oscillators ranging from micrograms
to kilograms. We quantify and contrast the utility of the current approach with
other platforms. The achieved performance and large improvement potential highlight
milligram-scale torsional pendulums as a powerful platform for precision measurements
relevant to future studies at the quantum-gravity interface.
article_processing_charge: No
author:
- first_name: Sofya
full_name: Agafonova, Sofya
id: 09501ff6-dca7-11ea-a8ae-b3e0b9166e80
last_name: Agafonova
orcid: 0000-0003-0582-2946
citation:
ama: 'Agafonova S. Research Data for: “One-milligram torsional pendulum toward experiments
at the quantum-gravity interface.” 2025. doi:10.15479/AT-ISTA-20842'
apa: 'Agafonova, S. (2025). Research Data for: “One-milligram torsional pendulum
toward experiments at the quantum-gravity interface.” Institute of Science and
Technology Austria. https://doi.org/10.15479/AT-ISTA-20842'
chicago: 'Agafonova, Sofia. “Research Data for: ‘One-Milligram Torsional Pendulum
toward Experiments at the Quantum-Gravity Interface.’” Institute of Science and
Technology Austria, 2025. https://doi.org/10.15479/AT-ISTA-20842.'
ieee: 'S. Agafonova, “Research Data for: ‘One-milligram torsional pendulum toward
experiments at the quantum-gravity interface.’” Institute of Science and Technology
Austria, 2025.'
ista: 'Agafonova S. 2025. Research Data for: ‘One-milligram torsional pendulum toward
experiments at the quantum-gravity interface’, Institute of Science and Technology
Austria, 10.15479/AT-ISTA-20842.'
mla: 'Agafonova, Sofia. Research Data for: “One-Milligram Torsional Pendulum
toward Experiments at the Quantum-Gravity Interface.” Institute of Science
and Technology Austria, 2025, doi:10.15479/AT-ISTA-20842.'
short: S. Agafonova, (2025).
contributor:
- first_name: Pere
last_name: Rosello
- first_name: Manuel
last_name: Mekonnen
- contributor_type: supervisor
first_name: Onur
id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
last_name: Hosten
orcid: 0000-0002-2031-204X
corr_author: '1'
date_created: 2025-12-21T14:23:50Z
date_published: 2025-12-22T00:00:00Z
date_updated: 2026-06-10T08:36:07Z
day: '22'
department:
- _id: GradSch
- _id: OnHo
doi: 10.15479/AT-ISTA-20842
file:
- access_level: open_access
checksum: 7af34e4226a00cdcb7f154272050e217
content_type: application/x-zip-compressed
creator: sagafono
date_created: 2025-12-22T13:45:30Z
date_updated: 2025-12-22T13:45:30Z
file_id: '20854'
file_name: AllData.zip
file_size: 146656591
relation: main_file
success: 1
- access_level: open_access
checksum: 71806a2ef9fb26ad7b78e04c6754ee4e
content_type: application/x-zip-compressed
creator: sagafono
date_created: 2025-12-22T13:45:33Z
date_updated: 2025-12-22T13:45:33Z
file_id: '20855'
file_name: SourceData.zip
file_size: 93470129
relation: main_file
success: 1
- access_level: open_access
checksum: 08facd1b4a102f83e4d99d48a85b258d
content_type: text/plain
creator: sagafono
date_created: 2025-12-22T13:51:09Z
date_updated: 2025-12-22T13:51:09Z
file_id: '20856'
file_name: readme.txt
file_size: 461
relation: main_file
success: 1
file_date_updated: 2025-12-22T13:51:09Z
has_accepted_license: '1'
license: https://creativecommons.org/licenses/by/4.0/
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: bdb2a702-d553-11ed-ba76-f12e3e5a3bc6
grant_number: '101087907'
name: 'A quantum hybrid of atoms and milligram-scale pendulums: towards gravitational
quantum mechanics'
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '20840'
relation: used_in_publication
status: public
status: public
title: 'Research Data for: ''One-milligram torsional pendulum toward experiments at
the quantum-gravity interface'''
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20845'
abstract:
- lang: eng
text: "We develop new attacks against the Evasive LWE family of assumptions, in
both the public and private-coin regime. To the best of our knowledge, ours are
the first attacks against Evasive LWE in the public-coin regime, for any instantiation
from the family. Our attacks are summarized below.\r\n\r\nPublic-Coin Attacks.\r\n1.The
recent work by Hseih, Lin and Luo [17] constructed the first Attribute Based Encryption
(ABE) for unbounded depth circuits by relying on the “circular” evasive LWE assumption.
This assumption has been popularly considered as a safe, public-coin instance
of Evasive LWE in contrast to its “private-coin” cousins (for instance, see [10,
11]).\r\nWe provide the first attack against this assumption, challenging the
widely held belief that this is a public-coin assumption.\r\n2. We demonstrate
a counter-example against vanilla public-coin evasive LWE by Wee [26] in an unnatural
parameter regime. Our attack crucially relies on the error in the pre-condition
being larger than the error in the post-condition, necessitating a refinement
of the assumption.\r\n\r\nPrivate-Coin Attacks.\r\n1. The recent work by Agrawal,
Kumari and Yamada [2] constructed the first functional encryption scheme for pseudorandom
functionalities (PRFE) and extended this to obfuscation for pseudorandom functionalities
(PRIO) [4] by relying on private-coin evasive LWE. We provide a new attack against
the assumption stated in the first posting of their work (subsequently refined
to avoid these attacks).\r\n2. The recent work by Branco et al. [8] (concurrently
to [4]) provides a construction of obfuscation for pseudorandom functionalities
by relying on private-coin evasive LWE. We provide a new attack against their
stated assumption.\r\n3. Branco et al. [8] showed that there exist contrived,
“self-referential” classes of pseudorandom functionalities for which pseudorandom
obfuscation cannot exist. We extend their techniques to develop an analogous result
for pseudorandom functional encryption.\r\n\r\nWhile Evasive LWE was developed
to specifically avoid “zeroizing attacks”, our work shows that in certain settings,
such attacks can still apply."
acknowledgement: "We thank Rachel Lin for expressing concern about the applicability
of “HJL-style” attacks [15] on the construction in [2] during a talk by the first
author about [2]. This was the starting point of the investigation that led us to
develop the attack in [5, Sec 4.1]. The first author also thanks Hoeteck Wee for
sharing his rationale for introducing evasive LWE.\r\nThe first author is supported
by the CyStar center of excellence, the VHAR faculty chair, and the C3iHub fellowship.
The third author thanks Cystar, IIT Madras, for supporting a visit to IIT Madras
during which the collaboration was initiated. The 4th author is partly supported
by JST CREST Grant Number JPMJCR22M1."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Shweta
full_name: Agrawal, Shweta
last_name: Agrawal
- first_name: Anuja
full_name: Modi, Anuja
last_name: Modi
- first_name: Anshu
full_name: Yadav, Anshu
id: dc8f1524-403e-11ee-bf07-9649ad996e21
last_name: Yadav
- first_name: Shota
full_name: Yamada, Shota
last_name: Yamada
citation:
ama: 'Agrawal S, Modi A, Yadav A, Yamada S. Zeroizing attacks against evasive and circular
evasive LWE. In: 23rd International Conference on Theory of Cryptography.
Vol 16269. Springer Nature; 2025:259-290. doi:10.1007/978-3-032-12293-3_9'
apa: 'Agrawal, S., Modi, A., Yadav, A., & Yamada, S. (2025). Zeroizing attacks
against evasive and circular evasive LWE. In 23rd International Conference
on Theory of Cryptography (Vol. 16269, pp. 259–290). Aarhus, Denmark: Springer
Nature. https://doi.org/10.1007/978-3-032-12293-3_9'
chicago: Agrawal, Shweta, Anuja Modi, Anshu Yadav, and Shota Yamada. “Zeroizing
Attacks against Evasive and Circular Evasive LWE.” In 23rd International Conference
on Theory of Cryptography, 16269:259–90. Springer Nature, 2025. https://doi.org/10.1007/978-3-032-12293-3_9.
ieee: S. Agrawal, A. Modi, A. Yadav, and S. Yamada, “Zeroizing attacks against evasive
and circular evasive LWE,” in 23rd International Conference on Theory of Cryptography,
Aarhus, Denmark, 2025, vol. 16269, pp. 259–290.
ista: 'Agrawal S, Modi A, Yadav A, Yamada S. 2025. Zeroizing attacks against evasive
and circular evasive LWE. 23rd International Conference on Theory of Cryptography.
TCC: Theory of Cryptography, LNCS, vol. 16269, 259–290.'
mla: Agrawal, Shweta, et al. “Zeroizing Attacks against Evasive and Circular Evasive
LWE.” 23rd International Conference on Theory of Cryptography, vol. 16269,
Springer Nature, 2025, pp. 259–90, doi:10.1007/978-3-032-12293-3_9.
short: S. Agrawal, A. Modi, A. Yadav, S. Yamada, in:, 23rd International Conference
on Theory of Cryptography, Springer Nature, 2025, pp. 259–290.
conference:
end_date: 2025-12-05
location: Aarhus, Denmark
name: 'TCC: Theory of Cryptography'
start_date: 2025-12-01
date_created: 2025-12-21T23:01:33Z
date_published: 2025-12-05T00:00:00Z
date_updated: 2025-12-29T11:51:13Z
day: '05'
department:
- _id: KrPi
doi: 10.1007/978-3-032-12293-3_9
intvolume: ' 16269'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2025/375
month: '12'
oa: 1
oa_version: Preprint
page: 259-290
publication: 23rd International Conference on Theory of Cryptography
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783032122926'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Zeroizing attacks against evasive and circular evasive LWE
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16269
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20846'
abstract:
- lang: eng
text: "CVRFs are PRFs that unify the properties of verifiable and constrained PRFs.
Since they were introduced concurrently by Fuchsbauer and Chandran-Raghuraman-Vinayagamurthy
in 2014, it has been an open problem to construct CVRFs without using heavy machinery
such as multilinear maps, obfuscation or functional encryption.\r\nWe solve this
problem by constructing a prefix-constrained verifiable PRF that does not rely
on the aforementioned assumptions. Essentially, our construction is a verifiable
version of the Goldreich-Goldwasser-Micali PRF. To achieve verifiability we leverage
degree-2 algebraic PRGs and bilinear groups. In short, proofs consist of intermediate
values of the Goldreich-Goldwasser-Micali PRF raised to the exponents of group
elements. These outputs can be verified using pairings since the underlying PRG
is of degree 2.\r\nWe prove the selective security of our construction under the
Decisional Square Diffie-Hellman (DSDH) assumption and a new assumption, which
we dub recursive Decisional Diffie-Hellman (recursive DDH).\r\nWe prove the soundness
of recursive DDH in the generic group model assuming the hardness of the Multivariate
Quadratic (MQ) problem and a new variant thereof, which we call MQ+.\r\nLast,
in terms of applications, we observe that our CVRF is also an exponent (C)VRF
in the plain model. Exponent VRFs were recently introduced by Boneh et al. (Eurocrypt’25)
with various applications to threshold cryptography in mind. In addition to that,
we give further applications for prefix-CVRFs in the blockchain setting, namely,
stake-pooling and compressible randomness beacons."
acknowledgement: "We thank Jonas Steinbach and Gertjan De Mulder for helpful discussions
on BIP 32, Dennis Hofheinz and Julia Kastner for helpful discussions on early prototypes
of our CVRF, and Klaus Kraßnitzer for running pairing benchmarks on his MacBook
Pro.\r\nChristoph U. Günther: This research was funded in whole or in part by the
Austrian Science Fund (FWF) 10.55776/F85. For open access purposes, the author has
applied a CC BY public copyright license to any author-accepted manuscript version
arising from this submission."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Nicholas
full_name: Brandt, Nicholas
last_name: Brandt
- first_name: Miguel
full_name: Cueto Noval, Miguel
id: ffc563a3-f6e0-11ea-865d-e3cce03d17cc
last_name: Cueto Noval
orcid: 0000-0002-2505-4246
- first_name: Christoph Ullrich
full_name: Günther, Christoph Ullrich
id: ec98511c-eb8e-11eb-b029-edd25d7271a1
last_name: Günther
- first_name: Akin
full_name: Ünal, Akin
id: f6b56fb6-dc63-11ee-9dbf-f6780863a85a
last_name: Ünal
orcid: 0000-0002-8929-0221
- first_name: Stella
full_name: Wohnig, Stella
last_name: Wohnig
citation:
ama: 'Brandt N, Cueto Noval M, Günther CU, Ünal A, Wohnig S. Constrained verifiable
random functions without obfuscation and friends. In: 23rd International Conference
on Theory of Cryptography. Vol 16271. Springer Nature; 2025:478-511. doi:10.1007/978-3-032-12290-2_16'
apa: 'Brandt, N., Cueto Noval, M., Günther, C. U., Ünal, A., & Wohnig, S. (2025).
Constrained verifiable random functions without obfuscation and friends. In 23rd
International Conference on Theory of Cryptography (Vol. 16271, pp. 478–511).
Aarhus, Denmark: Springer Nature. https://doi.org/10.1007/978-3-032-12290-2_16'
chicago: Brandt, Nicholas, Miguel Cueto Noval, Christoph Ullrich Günther, Akin Ünal,
and Stella Wohnig. “Constrained Verifiable Random Functions without Obfuscation
and Friends.” In 23rd International Conference on Theory of Cryptography,
16271:478–511. Springer Nature, 2025. https://doi.org/10.1007/978-3-032-12290-2_16.
ieee: N. Brandt, M. Cueto Noval, C. U. Günther, A. Ünal, and S. Wohnig, “Constrained
verifiable random functions without obfuscation and friends,” in 23rd International
Conference on Theory of Cryptography, Aarhus, Denmark, 2025, vol. 16271, pp.
478–511.
ista: 'Brandt N, Cueto Noval M, Günther CU, Ünal A, Wohnig S. 2025. Constrained
verifiable random functions without obfuscation and friends. 23rd International
Conference on Theory of Cryptography. TCC: Theory of Cryptography, LNCS, vol.
16271, 478–511.'
mla: Brandt, Nicholas, et al. “Constrained Verifiable Random Functions without Obfuscation
and Friends.” 23rd International Conference on Theory of Cryptography,
vol. 16271, Springer Nature, 2025, pp. 478–511, doi:10.1007/978-3-032-12290-2_16.
short: N. Brandt, M. Cueto Noval, C.U. Günther, A. Ünal, S. Wohnig, in:, 23rd International
Conference on Theory of Cryptography, Springer Nature, 2025, pp. 478–511.
conference:
end_date: 2025-12-05
location: Aarhus, Denmark
name: 'TCC: Theory of Cryptography'
start_date: 2025-12-01
corr_author: '1'
date_created: 2025-12-21T23:01:34Z
date_published: 2025-12-05T00:00:00Z
date_updated: 2025-12-29T11:11:29Z
day: '05'
department:
- _id: KrPi
doi: 10.1007/978-3-032-12290-2_16
intvolume: ' 16271'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2025/1045
month: '12'
oa: 1
oa_version: Preprint
page: 478-511
project:
- _id: 34a34d57-11ca-11ed-8bc3-a2688a8724e1
grant_number: F8509
name: Security and Privacy by Design for Complex Systems
publication: 23rd International Conference on Theory of Cryptography
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783032122896'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Constrained verifiable random functions without obfuscation and friends
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16271
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20847'
abstract:
- lang: eng
text: "We report on an experimental active matter system with motion restricted
to four cardinal directions. Our particles are magnetite-doped colloidal spheres
driven by the Quincke electrorotational instability. The absence of a magnetic
field (|\U0001D469|=0) leads to circular trajectories interspersed with short
spontaneous runs. Intermediate fields (|\U0001D469|≲20mT) linearize the motion
along the axis perpendicular to \U0001D469. At high magnetic fields, we observe
the surprising emergence of a second, distinct linearization along the axis parallel
to \U0001D469. With numerical simulations, we show that this behavior can be explained
by anisotropic magnetic susceptibility."
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
- _id: ScienComp
- _id: LifeSc
acknowledgement: "This research was funded in whole or in part by the Austrian Science
Fund (FWF) [Grant DOI: 10.55776/ESP298]. This project has received funding from
the European Research Council (ERC) under the European Union’s Horizon 2020 research
and innovation programme (Grant\r\nAgreement No. 949120). This research was supported
by the Scientific Service Units of The Institute of Science and Technology Austria
(ISTA) through resources provided by the Miba Machine Shop, Nanofabrication Facility,
Scientific Computing Facility, and Lab Support Facility. We wish to acknowledge
the crucial contributions of Alexandre Morin in getting the project off the ground,
and Jack Merrin for creating the SU-8 deposition protocol used in the construction
of our\r\ncells. We also wish to thank Kimberley Modic and Hamza Nasir for their
work on single-particle characterization. "
article_number: '065418'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Eavan
full_name: Fitzgerald, Eavan
id: 2df8ab8f-080d-11ed-979a-bfe651ca3afa
last_name: Fitzgerald
- first_name: Cécile
full_name: Clavaud, Cécile
id: 5f654c5d-04a1-11eb-ab36-ba9ffec58bd8
last_name: Clavaud
orcid: 0000-0002-1843-3803
- first_name: Debasish
full_name: Das, Debasish
last_name: Das
- first_name: Isaac C
full_name: Lenton, Isaac C
id: a550210f-223c-11ec-8182-e2d45e817efb
last_name: Lenton
orcid: 0000-0002-5010-6984
- first_name: Scott R
full_name: Waitukaitis, Scott R
id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
last_name: Waitukaitis
orcid: 0000-0002-2299-3176
citation:
ama: 'Fitzgerald E, Clavaud C, Das D, Lenton IC, Waitukaitis SR. Rolling at right
angles: Magnetic anisotropy enables dual-anisotropic active matter. Physical
Review E. 2025;112(6). doi:10.1103/1ss8-31rb'
apa: 'Fitzgerald, E., Clavaud, C., Das, D., Lenton, I. C., & Waitukaitis, S.
R. (2025). Rolling at right angles: Magnetic anisotropy enables dual-anisotropic
active matter. Physical Review E. American Physical Society. https://doi.org/10.1103/1ss8-31rb'
chicago: 'Fitzgerald, Eavan, Cécile Clavaud, Debasish Das, Isaac C Lenton, and Scott
R Waitukaitis. “Rolling at Right Angles: Magnetic Anisotropy Enables Dual-Anisotropic
Active Matter.” Physical Review E. American Physical Society, 2025. https://doi.org/10.1103/1ss8-31rb.'
ieee: 'E. Fitzgerald, C. Clavaud, D. Das, I. C. Lenton, and S. R. Waitukaitis, “Rolling
at right angles: Magnetic anisotropy enables dual-anisotropic active matter,”
Physical Review E, vol. 112, no. 6. American Physical Society, 2025.'
ista: 'Fitzgerald E, Clavaud C, Das D, Lenton IC, Waitukaitis SR. 2025. Rolling
at right angles: Magnetic anisotropy enables dual-anisotropic active matter. Physical
Review E. 112(6), 065418.'
mla: 'Fitzgerald, Eavan, et al. “Rolling at Right Angles: Magnetic Anisotropy Enables
Dual-Anisotropic Active Matter.” Physical Review E, vol. 112, no. 6, 065418,
American Physical Society, 2025, doi:10.1103/1ss8-31rb.'
short: E. Fitzgerald, C. Clavaud, D. Das, I.C. Lenton, S.R. Waitukaitis, Physical
Review E 112 (2025).
corr_author: '1'
date_created: 2025-12-21T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2025-12-29T11:19:34Z
day: '01'
ddc:
- '530'
department:
- _id: ScWa
doi: 10.1103/1ss8-31rb
ec_funded: 1
external_id:
arxiv:
- '2508.05643'
file:
- access_level: open_access
checksum: d593e933f976c3f3cde37ad66539d57d
content_type: application/pdf
creator: dernst
date_created: 2025-12-29T11:15:42Z
date_updated: 2025-12-29T11:15:42Z
file_id: '20862'
file_name: 2025_PhysReviewE_Fitzgerald.pdf
file_size: 2131491
relation: main_file
success: 1
file_date_updated: 2025-12-29T11:15:42Z
has_accepted_license: '1'
intvolume: ' 112'
issue: '6'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: bd8eede5-d553-11ed-ba76-eaded0d13485
grant_number: E 298
name: 'MixQUIckR: Mixing with QUIncke Rollers'
- _id: 0aa60e99-070f-11eb-9043-a6de6bdc3afa
call_identifier: H2020
grant_number: '949120'
name: 'Tribocharge: a multi-scale approach to an enduring problem in physics'
publication: Physical Review E
publication_identifier:
eissn:
- 2470-0053
issn:
- 2470-0045
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Rolling at right angles: Magnetic anisotropy enables dual-anisotropic active
matter'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20848'
abstract:
- lang: eng
text: 'Genetic variation that influences complex disease susceptibility is introduced
into the population by mutation and removed by natural selection and genetic drift.
This mutation–selection–drift balance (MSDB) shapes the prevalence of a disease
and its genetic architecture. To date, however, MSDB has been modeled only for
monogenic (Mendelian) diseases. Here, we develop an MSDB model for complex disease
susceptibility: we assume that genotype relates to disease risk according to the
canonical liability threshold model and that the selection on variants affecting
risk stems from the fitness cost of the disease. We focus on diseases that are
highly polygenic, entail a substantial fitness cost, and are neither extremely
common in the population nor exceedingly rare. The comparison of model predictions
with genome-wide association studies and other observations in humans indicates
that common genetic variation affecting complex disease susceptibility is little
affected by directional selection and instead shaped by pleiotropic stabilizing
selection on other traits. In turn, directional selection may exert a more substantial
effect on rare, large-effect variants. Our results also suggest that current estimates
of disease heritability are likely biased. The model thus provides a better understanding
of the evolutionary processes that shape the architecture and prevalence of complex
diseases.'
acknowledgement: We thank Nick Barton, Magnus Nordborg, John Novembre, Molly Przeworski,
and Himani Sachdeva for many helpful discussions and for comments on the manuscript,
and we thank Joshua Schraiber and 2 anonymous reviewers for comments on the manuscript.
We also thank members of the Sella, Przeworski and Andolfatto labs at Columbia University,
and the Berg, Novembre and Steinrücken labs at the University of Chicago, for feedback
on the work at various stages. This work was completed in part with resources provided
by the University of Chicago's Research Computing Center. This work was supported
by National Institutes of Health F32 grant GM126787 and R35 grant GM151257 to J.J.B.
and National Institutes of Health R01 grant GM115889 to G.S.
article_number: iyaf220
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jeremy J.
full_name: Berg, Jeremy J.
last_name: Berg
- first_name: Xinyi
full_name: Li, Xinyi
last_name: Li
- first_name: Kellen
full_name: Riall, Kellen
last_name: Riall
- first_name: Laura
full_name: Hayward, Laura
id: fc885ee5-24bf-11eb-ad7b-bcc5104c0c1b
last_name: Hayward
- first_name: Guy
full_name: Sella, Guy
last_name: Sella
citation:
ama: Berg JJ, Li X, Riall K, Hayward L, Sella G. Mutation–selection–drift balance
models of complex diseases. Genetics. 2025;231(4). doi:10.1093/genetics/iyaf220
apa: Berg, J. J., Li, X., Riall, K., Hayward, L., & Sella, G. (2025). Mutation–selection–drift
balance models of complex diseases. Genetics. Oxford University Press.
https://doi.org/10.1093/genetics/iyaf220
chicago: Berg, Jeremy J., Xinyi Li, Kellen Riall, Laura Hayward, and Guy Sella.
“Mutation–Selection–Drift Balance Models of Complex Diseases.” Genetics.
Oxford University Press, 2025. https://doi.org/10.1093/genetics/iyaf220.
ieee: J. J. Berg, X. Li, K. Riall, L. Hayward, and G. Sella, “Mutation–selection–drift
balance models of complex diseases,” Genetics, vol. 231, no. 4. Oxford
University Press, 2025.
ista: Berg JJ, Li X, Riall K, Hayward L, Sella G. 2025. Mutation–selection–drift
balance models of complex diseases. Genetics. 231(4), iyaf220.
mla: Berg, Jeremy J., et al. “Mutation–Selection–Drift Balance Models of Complex
Diseases.” Genetics, vol. 231, no. 4, iyaf220, Oxford University Press,
2025, doi:10.1093/genetics/iyaf220.
short: J.J. Berg, X. Li, K. Riall, L. Hayward, G. Sella, Genetics 231 (2025).
date_created: 2025-12-21T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2025-12-29T11:29:16Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/genetics/iyaf220
external_id:
pmid:
- '41073879'
file:
- access_level: open_access
checksum: b02eb6b78028b8bef435edc8435a8468
content_type: application/pdf
creator: dernst
date_created: 2025-12-29T11:27:51Z
date_updated: 2025-12-29T11:27:51Z
file_id: '20863'
file_name: 2025_Genetics_Berg.pdf
file_size: 1182339
relation: main_file
success: 1
file_date_updated: 2025-12-29T11:27:51Z
has_accepted_license: '1'
intvolume: ' 231'
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Genetics
publication_identifier:
eissn:
- 1943-2631
issn:
- 0016-6731
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mutation–selection–drift balance models of complex diseases
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 231
year: '2025'
...
---
APC_amount: 3003,56 EUR
OA_place: publisher
OA_type: hybrid
_id: '20857'
abstract:
- lang: eng
text: 'Evolutionary games provide a flexible mathematical framework for many problems
in biology and social evolution. Prisoners’ dilemma, and in particular, the important
special case of donation games, represents social dilemmas where cooperation is
mutually beneficial, yet defection is preferred by selfish agents. In evolutionary
games on networks, the agents interact over a population structure. The existence
of population structures that promote cooperative behavior is a fascinating and
active research topic. Previous research establishes structures promoting cooperation
in the limit of weak selection where the benefit-to-cost ratio β exceeds 1.5.
The existence of such structures for medium and strong selection for 1 < ß < 2
and for weak selection for 1 < ß < 1.5 has been a long-standing open question.
First, we answer the open questions in the affirmative: For every selection strength
and every ß > 1, we construct networks promoting cooperation. Second, we present
a robustness result with respect to β and selection strength: Our structures promote
cooperation for a range of these parameter values rather than specific parameter
values. Finally, we supplement our theoretical results with simulation results
on small population structures that show the effectiveness of our construction
over well-studied population structures.'
acknowledgement: J.S. and K.C. were supported by the European Research Council CoG
863818 (ForM-SMArt) and Austrian Science Fund (FWF) 10.55776/COE12.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jakub
full_name: Svoboda, Jakub
id: 130759D2-D7DD-11E9-87D2-DE0DE6697425
last_name: Svoboda
orcid: 0000-0002-1419-3267
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
citation:
ama: Svoboda J, Chatterjee K. Promoters of cooperation in evolutionary games. Proceedings
of the National Academy of Sciences. 2025;122(51):e2524109122. doi:10.1073/pnas.2524109122
apa: Svoboda, J., & Chatterjee, K. (2025). Promoters of cooperation in evolutionary
games. Proceedings of the National Academy of Sciences. National Academy
of Sciences. https://doi.org/10.1073/pnas.2524109122
chicago: Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in
Evolutionary Games.” Proceedings of the National Academy of Sciences. National
Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2524109122.
ieee: J. Svoboda and K. Chatterjee, “Promoters of cooperation in evolutionary games,”
Proceedings of the National Academy of Sciences, vol. 122, no. 51. National
Academy of Sciences, p. e2524109122, 2025.
ista: Svoboda J, Chatterjee K. 2025. Promoters of cooperation in evolutionary games.
Proceedings of the National Academy of Sciences. 122(51), e2524109122.
mla: Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in Evolutionary
Games.” Proceedings of the National Academy of Sciences, vol. 122, no.
51, National Academy of Sciences, 2025, p. e2524109122, doi:10.1073/pnas.2524109122.
short: J. Svoboda, K. Chatterjee, Proceedings of the National Academy of Sciences
122 (2025) e2524109122.
corr_author: '1'
date_created: 2025-12-28T23:01:26Z
date_published: 2025-12-15T00:00:00Z
date_updated: 2026-05-20T08:13:17Z
day: '15'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1073/pnas.2524109122
ec_funded: 1
external_id:
pmid:
- '41397136'
file:
- access_level: open_access
checksum: dd50b62a1efc28c0133fe9c11dbee53c
content_type: application/pdf
creator: dernst
date_created: 2025-12-29T09:36:50Z
date_updated: 2025-12-29T09:36:50Z
file_id: '20860'
file_name: 2025_PNAS_Svoboda.pdf
file_size: 2308124
relation: main_file
success: 1
file_date_updated: 2025-12-29T09:36:50Z
has_accepted_license: '1'
intvolume: ' 122'
issue: '51'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: e2524109122
pmid: 1
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Promoters of cooperation in evolutionary games
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 122
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20864'
abstract:
- lang: eng
text: Studies of the distant Universe are providing key insights into our understanding
of the formation of galaxies. The advent of the James Webb Space Telescope (JWST)
has significantly enhanced our observational capabilities, leading to an expanded
redshift frontier, providing unprecedented detail in the characterisation of early
galaxies and enabling the discovery of new populations of accreting black holes.
This review aims to provide an introduction to the basic processes and components
that shape the observed spectra of galaxies, with a focus on their relevance to
techniques with which high-redshift galaxies are selected. The review further
introduces specific topics that have attracted significant attention in recent
literature, including the discovery of highly efficient galaxy formation in the
early Universe, the relation between galaxies and the process of reionization,
new insights into the formation of the first stars and the enrichment of interstellar
gas with heavy elements, and breakthroughs in our understanding of the origins
of supermassive black holes.
acknowledgement: I thank Claudia Di Cesare, Edoardo Iani, Gauri Kotiwale and Wendy
Sun for proofreading, Daichi Kashino, Gauri Kotiwale, Sara Mascia, Benjamín Navarette
and Joris Witstok for their assistance in preparing some of the Figures, and Richard
Ellis and Stephen Blundell for constructive comments. Funded by the European Union
(ERC, AGENTS, 101076224).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
citation:
ama: 'Matthee JJ. JWST provides a new view of cosmic dawn: Latest developments in
studies of early galaxies. Contemporary Physics. 2025;66(1-4):116-151.
doi:10.1080/00107514.2025.2586370'
apa: 'Matthee, J. J. (2025). JWST provides a new view of cosmic dawn: Latest developments
in studies of early galaxies. Contemporary Physics. Taylor & Francis.
https://doi.org/10.1080/00107514.2025.2586370'
chicago: 'Matthee, Jorryt J. “JWST Provides a New View of Cosmic Dawn: Latest Developments
in Studies of Early Galaxies.” Contemporary Physics. Taylor & Francis,
2025. https://doi.org/10.1080/00107514.2025.2586370.'
ieee: 'J. J. Matthee, “JWST provides a new view of cosmic dawn: Latest developments
in studies of early galaxies,” Contemporary Physics, vol. 66, no. 1–4.
Taylor & Francis, pp. 116–151, 2025.'
ista: 'Matthee JJ. 2025. JWST provides a new view of cosmic dawn: Latest developments
in studies of early galaxies. Contemporary Physics. 66(1–4), 116–151.'
mla: 'Matthee, Jorryt J. “JWST Provides a New View of Cosmic Dawn: Latest Developments
in Studies of Early Galaxies.” Contemporary Physics, vol. 66, no. 1–4,
Taylor & Francis, 2025, pp. 116–51, doi:10.1080/00107514.2025.2586370.'
short: J.J. Matthee, Contemporary Physics 66 (2025) 116–151.
corr_author: '1'
date_created: 2025-12-29T12:05:25Z
date_published: 2025-12-04T00:00:00Z
date_updated: 2026-04-07T08:44:00Z
day: '04'
department:
- _id: JoMa
doi: 10.1080/00107514.2025.2586370
external_id:
arxiv:
- '2511.04843'
intvolume: ' 66'
issue: 1-4
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2511.04843
month: '12'
oa: 1
oa_version: Preprint
page: 116-151
project:
- _id: bd9b2118-d553-11ed-ba76-db24564edfea
grant_number: '101076224'
name: Young galaxies as tracers and agents of cosmic reionization
publication: Contemporary Physics
publication_identifier:
eissn:
- 1366-5812
issn:
- 0010-7514
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'JWST provides a new view of cosmic dawn: Latest developments in studies of
early galaxies'
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 66
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20866'
abstract:
- lang: eng
text: In this work, we present hypernode automata as a specification formalism for
hyperproperties of systems whose executions may be misaligned among themselves,
such as concurrent systems. These automata consist of nodes labeled with hypernode
logic formulas and transitions marked with synchronizing actions. Hypernode logic
formulas establish relations between sequences of variable values among different
system executions. This logic enables both synchronous and asynchronous analysis
of traces. In its asynchronous view on execution traces, hypernode formulas establish
relations on the order of value changes for each variable without correlating
their timing. In both views, the analysis of different execution traces is synchronized
through the transitions of hypernode automata. By combining logic’s declarative
nature with automata’s procedural power, hypernode automata seamlessly integrate
asynchronicity requirements at the node level with synchronicity between node
transitions. We show that the model-checking problem for hypernode automata is
decidable for specifications where each node specifies either a synchronous or
an asynchronous requirement for the system’s executions, but not both.
acknowledgement: This work was supported in part by the Austrian Science Fund (FWF)
SFB project SpyCoDe 10.55776/F85, by the FWF projects ZK-35 and W1255-N23, and by
the ERC Advanced Grant VAMOS 101020093. Open access funding provided by Institute
of Science and Technology (IST Austria).
article_number: '43'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Ezio
full_name: Bartocci, Ezio
last_name: Bartocci
- first_name: Marek
full_name: Chalupa, Marek
id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
last_name: Chalupa
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
- first_name: Dejan
full_name: Nickovic, Dejan
id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
last_name: Nickovic
- first_name: Ana
full_name: Oliveira da Costa, Ana
id: f347ec37-6676-11ee-b395-a888cb7b4fb4
last_name: Oliveira da Costa
orcid: 0000-0002-8741-5799
citation:
ama: Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. Hypernode
automata. Acta Informatica. 2025;62(4). doi:10.1007/s00236-025-00509-8
apa: Bartocci, E., Chalupa, M., Henzinger, T. A., Nickovic, D., & Oliveira da
Costa, A. (2025). Hypernode automata. Acta Informatica. Springer Nature.
https://doi.org/10.1007/s00236-025-00509-8
chicago: Bartocci, Ezio, Marek Chalupa, Thomas A Henzinger, Dejan Nickovic, and
Ana Oliveira da Costa. “Hypernode Automata.” Acta Informatica. Springer
Nature, 2025. https://doi.org/10.1007/s00236-025-00509-8.
ieee: E. Bartocci, M. Chalupa, T. A. Henzinger, D. Nickovic, and A. Oliveira da
Costa, “Hypernode automata,” Acta Informatica, vol. 62, no. 4. Springer
Nature, 2025.
ista: Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. 2025.
Hypernode automata. Acta Informatica. 62(4), 43.
mla: Bartocci, Ezio, et al. “Hypernode Automata.” Acta Informatica, vol.
62, no. 4, 43, Springer Nature, 2025, doi:10.1007/s00236-025-00509-8.
short: E. Bartocci, M. Chalupa, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa,
Acta Informatica 62 (2025).
corr_author: '1'
date_created: 2025-12-29T12:07:12Z
date_published: 2025-12-09T00:00:00Z
date_updated: 2026-01-05T12:27:41Z
day: '09'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/s00236-025-00509-8
ec_funded: 1
external_id:
arxiv:
- '2305.02836'
file:
- access_level: open_access
checksum: 06ed45a1218ad8464818803ae2968aaf
content_type: application/pdf
creator: dernst
date_created: 2026-01-05T12:26:43Z
date_updated: 2026-01-05T12:26:43Z
file_id: '20944'
file_name: 2025_ActaInformatica_Bartocci.pdf
file_size: 7117003
relation: main_file
success: 1
file_date_updated: 2026-01-05T12:26:43Z
has_accepted_license: '1'
intvolume: ' 62'
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
call_identifier: H2020
grant_number: '101020093'
name: Vigilant Algorithmic Monitoring of Software
- _id: 34a1b658-11ca-11ed-8bc3-c75229f0241e
grant_number: F8502
name: Interface Theory for Security and Privacy
publication: Acta Informatica
publication_identifier:
eissn:
- 1432-0525
issn:
- 0001-5903
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '14405'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Hypernode automata
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20867'
abstract:
- lang: eng
text: We discuss the embeddability of subspaces of the Gromov–Hausdorff space, which
consists of isometry classes of compact metric spaces endowed with the Gromov–Hausdorff
distance, into Hilbert spaces. These embeddings are particularly valuable for
applications to topological data analysis. We prove that its subspace consisting
of metric spaces with at most n points has asymptotic dimension n(n−1)∕2. Thus,
there exists a coarse embedding of that space into a Hilbert space. On the contrary,
if the number of points is not bounded, then the subspace cannot be coarsely embedded
into any uniformly convex Banach space and so, in particular, into any Hilbert
space. Furthermore, we prove that, even if we restrict to finite metric spaces
whose diameter is bounded by some constant, the subspace still cannot be bi-Lipschitz
embedded into any finite-dimensional Hilbert space. We obtain both nonembeddability
results by finding obstructions to coarse and bi-Lipschitz embeddings in families
of isometry classes of finite subsets of the real line endowed with the Euclidean–Hausdorff
distance.
acknowledgement: "The author was supported by the FWF Grant, Project number I4245-N35.
The author would like to thank Thomas Weighill for the helpful discussions around
Theorem 3.10, and Takamitsu Yamauchi for bringing to my attention the fundamental
reference [35]. Furthermore, the author\r\nis thankful for the detailed and helpful
comments of the reviewer of this manuscript."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nicolò
full_name: Zava, Nicolò
id: c8b3499c-7a77-11eb-b046-aa368cbbf2ad
last_name: Zava
orcid: 0000-0001-8686-1888
citation:
ama: Zava N. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
space into Hilbert spaces. Algebraic & Geometric Topology. 2025;25(8):5153-5174.
doi:10.2140/agt.2025.25.5153
apa: Zava, N. (2025). Coarse and bi-Lipschitz embeddability of subspaces of the
Gromov–Hausdorff space into Hilbert spaces. Algebraic & Geometric Topology.
Mathematical Sciences Publishers. https://doi.org/10.2140/agt.2025.25.5153
chicago: Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the
Gromov–Hausdorff Space into Hilbert Spaces.” Algebraic & Geometric Topology.
Mathematical Sciences Publishers, 2025. https://doi.org/10.2140/agt.2025.25.5153.
ieee: N. Zava, “Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
space into Hilbert spaces,” Algebraic & Geometric Topology, vol. 25,
no. 8. Mathematical Sciences Publishers, pp. 5153–5174, 2025.
ista: Zava N. 2025. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
space into Hilbert spaces. Algebraic & Geometric Topology. 25(8), 5153–5174.
mla: Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff
Space into Hilbert Spaces.” Algebraic & Geometric Topology, vol. 25,
no. 8, Mathematical Sciences Publishers, 2025, pp. 5153–74, doi:10.2140/agt.2025.25.5153.
short: N. Zava, Algebraic & Geometric Topology 25 (2025) 5153–5174.
corr_author: '1'
date_created: 2025-12-29T12:09:09Z
date_published: 2025-11-20T00:00:00Z
date_updated: 2026-01-05T12:19:09Z
day: '20'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.2140/agt.2025.25.5153
external_id:
arxiv:
- '2303.04730'
file:
- access_level: open_access
checksum: 1e05b4f17a44500ae1ae1e21bc636f6a
content_type: application/pdf
creator: dernst
date_created: 2026-01-05T12:16:38Z
date_updated: 2026-01-05T12:16:38Z
file_id: '20943'
file_name: 2025_AlgebraicGeomTopology_Zava.pdf
file_size: 574389
relation: main_file
success: 1
file_date_updated: 2026-01-05T12:16:38Z
has_accepted_license: '1'
intvolume: ' 25'
issue: '8'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 5153-5174
project:
- _id: 26AD5D90-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I04245
name: Algebraic Footprints of Geometric Features in Homology
publication: Algebraic & Geometric Topology
publication_identifier:
eissn:
- 1472-2739
issn:
- 1472-2747
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
space into Hilbert spaces
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2025'
...
---
OA_type: closed access
_id: '20868'
abstract:
- lang: eng
text: Residents of low-latitude megacities face growing vulnerability to humid-heat
stress under urbanization and global warming, yet limited research has assessed
the morbidity burden of mental and behavioral disorders (MBDs) linked to humid-heat
exposures in these cities. Here we quantify the hospital admissions of MBDs in
Shanghai, a megacity of over 25 million inhabitants, attributable to humid heat,
and project future burdens under various greenhouse gas (GHG)-emission and population
scenarios. Humid heat drives a higher morbidity burden than high temperature alone,
especially in humid-heat nights. Without population change, the humid-heat-related
morbidity burden of MBDs would increase by 68.2% (95% empirical confidence interval
56.7%–81.6%) under the highest-GHG-emission scenario by the 2090s, while 8,465
(95% empirical confidence interval 6,928–10,053) cases would be avoided by reducing
emissions to the lowest pathway. With projected population decline, the attributable
hospital admissions will decrease toward century’s end. These findings highlight
the benefit of GHG mitigation in reducing the growing MBD risks posed by extreme
humid heat.
acknowledgement: 'This research was supported by the National Natural Science Foundation
of China (grants 42288101 and 42175066) and Shanghai International Science and Technology
Partnership Project (grant 21230780200). G.S. is supported by the China Brain Project
(grant 2025ZD0215100), the National Natural Science Foundation of China (grant 82150710554),
the Chinese National Key Project (grant 2023YFE0199700), the National Natural Science
Foundation of China (grant W2541022) and the EC Horizon Europe: environMENTAL project.'
article_processing_charge: No
article_type: original
author:
- first_name: Chen
full_name: Liang, Chen
last_name: Liang
- first_name: Jiacan
full_name: Yuan, Jiacan
last_name: Yuan
- first_name: Renhe
full_name: Zhang, Renhe
last_name: Zhang
- first_name: Xu
full_name: Tang, Xu
last_name: Tang
- first_name: Gunter
full_name: Schumann, Gunter
last_name: Schumann
- first_name: Esther
full_name: Hitchen, Esther
last_name: Hitchen
- first_name: Elli
full_name: Polemiti, Elli
last_name: Polemiti
- first_name: Emin
full_name: Serin, Emin
last_name: Serin
- first_name: Hedi
full_name: Kebir, Hedi
last_name: Kebir
- first_name: Tristram A.
full_name: Lett, Tristram A.
last_name: Lett
- first_name: Nilakshi
full_name: Vaidya, Nilakshi
last_name: Vaidya
- first_name: Jean-Charles
full_name: Roy, Jean-Charles
last_name: Roy
- first_name: Henrik
full_name: Walter, Henrik
last_name: Walter
- first_name: Andreas
full_name: Heinz, Andreas
last_name: Heinz
- first_name: Markus
full_name: Ralser, Markus
last_name: Ralser
- first_name: Sven
full_name: Twardziok, Sven
last_name: Twardziok
- first_name: Roland
full_name: Eils, Roland
last_name: Eils
- first_name: Marcel
full_name: Jentsch, Marcel
last_name: Jentsch
- first_name: Ulrike-Helene
full_name: Taron, Ulrike-Helene
last_name: Taron
- first_name: Tatjana
full_name: Schütz, Tatjana
last_name: Schütz
- first_name: Kerstin
full_name: Schepanski, Kerstin
last_name: Schepanski
- first_name: Tobias
full_name: Banaschewski, Tobias
last_name: Banaschewski
- first_name: Maja
full_name: Neidhart, Maja
last_name: Neidhart
- first_name: Andreas
full_name: Meyer-Lindenberg, Andreas
last_name: Meyer-Lindenberg
- first_name: Heike
full_name: Tost, Heike
last_name: Tost
- first_name: Nathalie
full_name: Holz, Nathalie
last_name: Holz
- first_name: Emanuel
full_name: Schwarz, Emanuel
last_name: Schwarz
- first_name: Argyris
full_name: Stringaris, Argyris
last_name: Stringaris
- first_name: Nina
full_name: Christmann, Nina
last_name: Christmann
- first_name: Karina
full_name: Janson, Karina
last_name: Janson
- first_name: Frauke
full_name: Nees, Frauke
last_name: Nees
- first_name: Maja
full_name: Neidhart, Maja
last_name: Neidhart
- first_name: Beke
full_name: Seefried, Beke
last_name: Seefried
- first_name: Rieke
full_name: Aden, Rieke
last_name: Aden
- first_name: Ole A.
full_name: Andreassen, Ole A.
last_name: Andreassen
- first_name: Lars T.
full_name: Westlye, Lars T.
last_name: Westlye
- first_name: Dennis
full_name: van der Meer, Dennis
last_name: van der Meer
- first_name: Sara
full_name: Fernández-Cabello, Sara
last_name: Fernández-Cabello
- first_name: Rikka
full_name: Kjelkenes, Rikka
last_name: Kjelkenes
- first_name: Helga
full_name: Ask, Helga
last_name: Ask
- first_name: Michael
full_name: Rapp, Michael
last_name: Rapp
- first_name: Mira
full_name: Tschorn, Mira
last_name: Tschorn
- first_name: Sarah Jane
full_name: Böttger, Sarah Jane
last_name: Böttger
- first_name: Andre
full_name: Marquand, Andre
last_name: Marquand
- first_name: Antoine
full_name: Bernas, Antoine
last_name: Bernas
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Mel
full_name: Slater, Mel
last_name: Slater
- first_name: Jaime
full_name: Gallego, Jaime
last_name: Gallego
- first_name: Álvaro
full_name: Pastor, Álvaro
last_name: Pastor
- first_name: Guillem
full_name: Feixas, Guillem
last_name: Feixas
- first_name: Francisco José
full_name: Eiroa-Orosa, Francisco José
last_name: Eiroa-Orosa
- first_name: Markus M.
full_name: Nöthen, Markus M.
last_name: Nöthen
- first_name: Andreas J.
full_name: Forstner, Andreas J.
last_name: Forstner
- first_name: Isabelle
full_name: Claus, Isabelle
last_name: Claus
- first_name: Carina
full_name: Mathey, Carina
last_name: Mathey
- first_name: Stefanie
full_name: Heilmann-Heimbach, Stefanie
last_name: Heilmann-Heimbach
- first_name: Per
full_name: Hoffmann, Per
last_name: Hoffmann
- first_name: Abigail
full_name: Miller, Abigail
last_name: Miller
- first_name: Peter
full_name: Sommer, Peter
last_name: Sommer
- first_name: Karen
full_name: Schmitt, Karen
last_name: Schmitt
- first_name: Johannes
full_name: Wilbertz, Johannes
last_name: Wilbertz
- first_name: Myrto
full_name: Patraskaki, Myrto
last_name: Patraskaki
- first_name: Viktor
full_name: Jirsa, Viktor
last_name: Jirsa
- first_name: Spase
full_name: Petkoski, Spase
last_name: Petkoski
- first_name: Anastasios-Polykarpos
full_name: Athanasiadis, Anastasios-Polykarpos
last_name: Athanasiadis
- first_name: Bernhard
full_name: Spanlang, Bernhard
last_name: Spanlang
- first_name: Charlie
full_name: Pearmund, Charlie
last_name: Pearmund
- first_name: Sören
full_name: Hese, Sören
last_name: Hese
- first_name: Paul
full_name: Renner, Paul
last_name: Renner
- first_name: Tianye
full_name: Jia, Tianye
last_name: Jia
- first_name: Xiao
full_name: Chang, Xiao
last_name: Chang
- first_name: Yuxiang
full_name: Dai, Yuxiang
last_name: Dai
- first_name: Yunman
full_name: Xia, Yunman
last_name: Xia
- first_name: Yuzhu
full_name: Li, Yuzhu
last_name: Li
- first_name: Yanqing
full_name: Zhang, Yanqing
last_name: Zhang
- first_name: Vince
full_name: Calhoun, Vince
last_name: Calhoun
- first_name: Paul
full_name: Thompson, Paul
last_name: Thompson
- first_name: Nicholas
full_name: Clinton, Nicholas
last_name: Clinton
- first_name: Sylvane
full_name: Desrivières, Sylvane
last_name: Desrivières
- first_name: Kofoworola
full_name: Agunbiade, Kofoworola
last_name: Agunbiade
- first_name: Xinyang
full_name: Yu, Xinyang
last_name: Yu
- first_name: Zuo
full_name: Zhang, Zuo
last_name: Zhang
- first_name: Di
full_name: Chen, Di
last_name: Chen
- first_name: Allan H.
full_name: Young, Allan H.
last_name: Young
- first_name: Ameli
full_name: Schwalber, Ameli
last_name: Schwalber
- first_name: Vanessa
full_name: Köhler, Vanessa
last_name: Köhler
- first_name: Bernd
full_name: Stahl, Bernd
last_name: Stahl
- first_name: George
full_name: Ogoh, George
last_name: Ogoh
- first_name: Tamara
full_name: Schikowski, Tamara
last_name: Schikowski
- first_name: Ragnhild
full_name: Brandlistuen, Ragnhild
last_name: Brandlistuen
citation:
ama: Liang C, Yuan J, Zhang R, et al. Projecting the morbidity burden of mental
and behavioral disorders associated with increasing humid heat in Shanghai. Nature
Mental Health. 2025;3(12):1532-1544. doi:10.1038/s44220-025-00519-y
apa: Liang, C., Yuan, J., Zhang, R., Tang, X., Schumann, G., Hitchen, E., … Brandlistuen,
R. (2025). Projecting the morbidity burden of mental and behavioral disorders
associated with increasing humid heat in Shanghai. Nature Mental Health.
Springer Nature. https://doi.org/10.1038/s44220-025-00519-y
chicago: Liang, Chen, Jiacan Yuan, Renhe Zhang, Xu Tang, Gunter Schumann, Esther
Hitchen, Elli Polemiti, et al. “Projecting the Morbidity Burden of Mental and
Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” Nature
Mental Health. Springer Nature, 2025. https://doi.org/10.1038/s44220-025-00519-y.
ieee: C. Liang et al., “Projecting the morbidity burden of mental and behavioral
disorders associated with increasing humid heat in Shanghai,” Nature Mental
Health, vol. 3, no. 12. Springer Nature, pp. 1532–1544, 2025.
ista: Liang C, Yuan J, Zhang R, Tang X, Schumann G, Hitchen E, Polemiti E, Serin
E, Kebir H, Lett TA, Vaidya N, Roy J-C, Walter H, Heinz A, Ralser M, Twardziok
S, Eils R, Jentsch M, Taron U-H, Schütz T, Schepanski K, Banaschewski T, Neidhart
M, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Christmann N,
Janson K, Nees F, Neidhart M, Seefried B, Aden R, Andreassen OA, Westlye LT, van
der Meer D, Fernández-Cabello S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger
SJ, Marquand A, Bernas A, Novarino G, Slater M, Gallego J, Pastor Á, Feixas G,
Eiroa-Orosa FJ, Nöthen MM, Forstner AJ, Claus I, Mathey C, Heilmann-Heimbach S,
Hoffmann P, Miller A, Sommer P, Schmitt K, Wilbertz J, Patraskaki M, Jirsa V,
Petkoski S, Athanasiadis A-P, Spanlang B, Pearmund C, Hese S, Renner P, Jia T,
Chang X, Dai Y, Xia Y, Li Y, Zhang Y, Calhoun V, Thompson P, Clinton N, Desrivières
S, Agunbiade K, Yu X, Zhang Z, Chen D, Young AH, Schwalber A, Köhler V, Stahl
B, Ogoh G, Schikowski T, Brandlistuen R. 2025. Projecting the morbidity burden
of mental and behavioral disorders associated with increasing humid heat in Shanghai.
Nature Mental Health. 3(12), 1532–1544.
mla: Liang, Chen, et al. “Projecting the Morbidity Burden of Mental and Behavioral
Disorders Associated with Increasing Humid Heat in Shanghai.” Nature Mental
Health, vol. 3, no. 12, Springer Nature, 2025, pp. 1532–44, doi:10.1038/s44220-025-00519-y.
short: C. Liang, J. Yuan, R. Zhang, X. Tang, G. Schumann, E. Hitchen, E. Polemiti,
E. Serin, H. Kebir, T.A. Lett, N. Vaidya, J.-C. Roy, H. Walter, A. Heinz, M. Ralser,
S. Twardziok, R. Eils, M. Jentsch, U.-H. Taron, T. Schütz, K. Schepanski, T. Banaschewski,
M. Neidhart, A. Meyer-Lindenberg, H. Tost, N. Holz, E. Schwarz, A. Stringaris,
N. Christmann, K. Janson, F. Nees, M. Neidhart, B. Seefried, R. Aden, O.A. Andreassen,
L.T. Westlye, D. van der Meer, S. Fernández-Cabello, R. Kjelkenes, H. Ask, M.
Rapp, M. Tschorn, S.J. Böttger, A. Marquand, A. Bernas, G. Novarino, M. Slater,
J. Gallego, Á. Pastor, G. Feixas, F.J. Eiroa-Orosa, M.M. Nöthen, A.J. Forstner,
I. Claus, C. Mathey, S. Heilmann-Heimbach, P. Hoffmann, A. Miller, P. Sommer,
K. Schmitt, J. Wilbertz, M. Patraskaki, V. Jirsa, S. Petkoski, A.-P. Athanasiadis,
B. Spanlang, C. Pearmund, S. Hese, P. Renner, T. Jia, X. Chang, Y. Dai, Y. Xia,
Y. Li, Y. Zhang, V. Calhoun, P. Thompson, N. Clinton, S. Desrivières, K. Agunbiade,
X. Yu, Z. Zhang, D. Chen, A.H. Young, A. Schwalber, V. Köhler, B. Stahl, G. Ogoh,
T. Schikowski, R. Brandlistuen, Nature Mental Health 3 (2025) 1532–1544.
date_created: 2025-12-29T12:11:28Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T12:02:29Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-025-00519-y
intvolume: ' 3'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
page: 1532-1544
project:
- _id: 349d1832-11ca-11ed-8bc3-d79b574010e0
grant_number: '101057429'
name: Reducing the impact of major environmental challenges on mental health
publication: Nature Mental Health
publication_identifier:
issn:
- 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Projecting the morbidity burden of mental and behavioral disorders associated
with increasing humid heat in Shanghai
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2025'
...
---
OA_type: closed access
_id: '20869'
abstract:
- lang: eng
text: "Premise: What maintains trait divergence in the face of gene flow? Two varieties
of wild snapdragon (Antirrhinum majus) characterized by divergent flower color
hybridize in their native range. Selection on flower color genes is indicated
by sharp clines, but the selective agents have not been demonstrated. Although
previous work has focused on pollinators, pigmentation genes can also contribute
to abiotic stress tolerance. We hypothesized that pigmentation in A. majus mediates
stress tolerance, which could contribute to hybrid zone maintenance through parental
niche divergence or hybrid maladaptation. Specifically, we tested whether morphotype
mediates drought tolerance in an experiment comparing magenta-flowered var. pseudomajus,
yellow-flowered var. striatum, and their pink-flowered hybrid cross.\r\nMethods:
We experimentally compared drought tolerance of each morphotype from allopatric
crosses within and between varieties using three greenhouse treatments. Control
plants were watered as needed, while drought-treated plants were watered half
as often, either from the transplant stage (“early” drought), or from flowering
onset (“late” drought).\r\nResults: Parental morphotypes responded identically
to drought in fitness and most phenotypic traits. However, hybrids had lower survival
(14%) under late drought stress than parental morphotypes (70%). All hybrids that
flowered in the late drought treatment died, compared to ~20% of flowering parental
morphotypes.\r\nConclusions: Hybrid maladaptation to abiotic stress could potentially
contribute to flower color divergence in the face of gene flow in A. majus. Further
research should test the relevance of our results to field conditions and explicitly
probe the role of flower color genes in drought tolerance."
acknowledgement: Thank you to Doug Schemske and Nick Barton forcritically reviewing
the manuscript, Beatriz Pablo Car-mona for assisting with data collection, Melinda
Pickupand Eva Cereghetti for seedlings, and Louise Arathoon,Ksenia Khudiakova, Georg
Rieckh, Daria Shiplina, andAnja Westram for help with experimental maintenance.We
sincerely thank the Associate Editor Brenda Grewelland two anonymous reviewers for
their thoughtfulcomments and suggestions, which substantially improved the clarity
and quality of our manuscript. C.B. receivedfunding from the European Union's Horizon
2020 researchand innovation programme under the Marie Skłodowska‐Curie Grant Agreement
No. 754411
article_number: e70129
article_processing_charge: No
article_type: original
author:
- first_name: Alexandre
full_name: Fuster‐Calvo, Alexandre
last_name: Fuster‐Calvo
- first_name: Coline C.
full_name: Jaworski, Coline C.
last_name: Jaworski
- first_name: Thomas
full_name: Ellis, Thomas
id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
last_name: Ellis
orcid: 0000-0002-8511-0254
- first_name: Carina
full_name: Baskett, Carina
id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
last_name: Baskett
orcid: 0000-0002-7354-8574
citation:
ama: Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. Reduced fitness under drought
stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors.
American Journal of Botany. 2025;112(12). doi:10.1002/ajb2.70129
apa: Fuster‐Calvo, A., Jaworski, C. C., Ellis, T., & Baskett, C. (2025). Reduced
fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with
divergent flower colors. American Journal of Botany. Wiley. https://doi.org/10.1002/ajb2.70129
chicago: Fuster‐Calvo, Alexandre, Coline C. Jaworski, Thomas Ellis, and Carina Baskett.
“Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties
with Divergent Flower Colors.” American Journal of Botany. Wiley, 2025.
https://doi.org/10.1002/ajb2.70129.
ieee: A. Fuster‐Calvo, C. C. Jaworski, T. Ellis, and C. Baskett, “Reduced fitness
under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent
flower colors,” American Journal of Botany, vol. 112, no. 12. Wiley, 2025.
ista: Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. 2025. Reduced fitness under
drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower
colors. American Journal of Botany. 112(12), e70129.
mla: Fuster‐Calvo, Alexandre, et al. “Reduced Fitness under Drought Stress in F1
Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” American
Journal of Botany, vol. 112, no. 12, e70129, Wiley, 2025, doi:10.1002/ajb2.70129.
short: A. Fuster‐Calvo, C.C. Jaworski, T. Ellis, C. Baskett, American Journal of
Botany 112 (2025).
date_created: 2025-12-29T12:14:26Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T11:56:22Z
day: '01'
department:
- _id: NiBa
doi: 10.1002/ajb2.70129
ec_funded: 1
external_id:
pmid:
- '41327576 '
intvolume: ' 112'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: American Journal of Botany
publication_identifier:
eissn:
- 1537-2197
issn:
- 0002-9122
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/Alex-Fuster/hybrids_drought
scopus_import: '1'
status: public
title: Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties
with divergent flower colors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2025'
...
---
OA_type: closed access
_id: '20870'
abstract:
- lang: eng
text: RNA sequencing (RNA-seq) methodologies have evolved rapidly, offering powerful
tools to study gene expression, transcriptome dynamics, and molecular mechanisms
in various biological contexts. However, the complexity of these approaches poses
challenges in data interpretation, sensitivity, and applicability. This chapter
provides a comprehensive overview of RNA-seq methodologies, highlighting their
advantages, limitations, and applications, particularly in cardiovascular research.
Bulk RNA sequencing enables high-throughput gene expression profiling but lacks
the resolution to capture cellular heterogeneity and spatial context. Direct RNA
sequencing preserves native RNA modifications, offering insights into post-transcriptional
regulation, though it remains technically challenging. Single-cell RNA sequencing
(scRNA-seq) and spatial transcriptomics (ST) bridge these gaps by resolving transcriptomic
complexity at the cellular level and within tissue architecture, providing crucial
insights into disease mechanisms such as atherosclerosis. By summarizing the strengths
and limitations of these methodologies, this chapter aims to guide researchers
in selecting the most suitable transcriptomic approach for their studies, ultimately
advancing precision medicine and biomarker discovery in cardiovascular disease.
article_processing_charge: No
author:
- first_name: Victoria
full_name: Stopa, Victoria
last_name: Stopa
- first_name: Miron
full_name: Sopić, Miron
last_name: Sopić
- first_name: Guanliang
full_name: Li, Guanliang
last_name: Li
- first_name: Judith
full_name: Sluimer, Judith
last_name: Sluimer
- first_name: José
full_name: Basílio, José
last_name: Basílio
- first_name: Sander W.
full_name: van der Laan, Sander W.
last_name: van der Laan
- first_name: David P.
full_name: Kreil, David P.
last_name: Kreil
- first_name: Yvan
full_name: Devaux, Yvan
last_name: Devaux
- first_name: Bernhard
full_name: Hochreiter, Bernhard
id: e6cab3de-17f6-11ed-9210-c1e42e045e9d
last_name: Hochreiter
citation:
ama: 'Stopa V, Sopić M, Li G, et al. Essentials of transcriptomic methods: Navigating
through RNA sequencing and beyond. In: Devaux Y, Sopic M, eds. Transcriptomics
in Atherosclerosis. Elsevier; 2025:131-172. doi:10.1016/b978-0-443-33064-3.00016-5'
apa: 'Stopa, V., Sopić, M., Li, G., Sluimer, J., Basílio, J., van der Laan, S. W.,
… Hochreiter, B. (2025). Essentials of transcriptomic methods: Navigating through
RNA sequencing and beyond. In Y. Devaux & M. Sopic (Eds.), Transcriptomics
in Atherosclerosis (pp. 131–172). Elsevier. https://doi.org/10.1016/b978-0-443-33064-3.00016-5'
chicago: 'Stopa, Victoria, Miron Sopić, Guanliang Li, Judith Sluimer, José Basílio,
Sander W. van der Laan, David P. Kreil, Yvan Devaux, and Bernhard Hochreiter.
“Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.”
In Transcriptomics in Atherosclerosis, edited by Yvan Devaux and Miron
Sopic, 131–72. Elsevier, 2025. https://doi.org/10.1016/b978-0-443-33064-3.00016-5.'
ieee: 'V. Stopa et al., “Essentials of transcriptomic methods: Navigating
through RNA sequencing and beyond,” in Transcriptomics in Atherosclerosis,
Y. Devaux and M. Sopic, Eds. Elsevier, 2025, pp. 131–172.'
ista: 'Stopa V, Sopić M, Li G, Sluimer J, Basílio J, van der Laan SW, Kreil DP,
Devaux Y, Hochreiter B. 2025.Essentials of transcriptomic methods: Navigating
through RNA sequencing and beyond. In: Transcriptomics in Atherosclerosis. , 131–172.'
mla: 'Stopa, Victoria, et al. “Essentials of Transcriptomic Methods: Navigating
through RNA Sequencing and Beyond.” Transcriptomics in Atherosclerosis,
edited by Yvan Devaux and Miron Sopic, Elsevier, 2025, pp. 131–72, doi:10.1016/b978-0-443-33064-3.00016-5.'
short: V. Stopa, M. Sopić, G. Li, J. Sluimer, J. Basílio, S.W. van der Laan, D.P.
Kreil, Y. Devaux, B. Hochreiter, in:, Y. Devaux, M. Sopic (Eds.), Transcriptomics
in Atherosclerosis, Elsevier, 2025, pp. 131–172.
date_created: 2025-12-29T12:16:22Z
date_published: 2025-10-24T00:00:00Z
date_updated: 2026-01-05T11:49:54Z
day: '24'
department:
- _id: Bio
doi: 10.1016/b978-0-443-33064-3.00016-5
editor:
- first_name: Yvan
full_name: Devaux, Yvan
last_name: Devaux
- first_name: Miron
full_name: Sopic, Miron
last_name: Sopic
language:
- iso: eng
month: '10'
oa_version: None
page: 131-172
publication: Transcriptomics in Atherosclerosis
publication_identifier:
isbn:
- '9780443330643'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Essentials of transcriptomic methods: Navigating through RNA sequencing and
beyond'
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_type: closed access
_id: '20928'
abstract:
- lang: eng
text: The current work focuses on the performance of hydrodynamics and mass transfer
in a microchannel. A hydrodynamic model is developed for a gas–liquid (CO2–water)
system and slug flow pattern. For the first time in literature, a concept of pulsating
velocity input is introduced in an enhanced cross-T-junction microchannel to study
the mass transfer using the physical absorption mechanism in ANSYS FLUENT R2 2024.
The mass transfer model is associated with the hydrodynamic model and some user-defined
functions in FLUENT. This work demonstrates that incorporating obstructions and
applying trapezoidal and sinusoidal wave inputs improve the CO2 absorption rate.
The obtained data are further compared with the plain T-junction microchannel
in terms of mass transfer coefficient. Solubility of CO2 in three different solvents
(ethyl alcohol, water, and ethylene glycol) has been revealed in an enhanced cross
T-junction microchannel at two different temperatures, i.e., 298.15 and 303.15 K.
The numerical simulations illustrate that an increase in temperature has an adverse
effect on the mass transfer rate.
acknowledgement: The authors are thankful for the financial support provided by the
Ministry of Education, India, and MNNIT Allahabad, as well as for the necessary
equipment, computing facilities, and overall support to carry out this study.
article_number: '122012'
article_processing_charge: No
article_type: original
author:
- first_name: Bushra
full_name: Khatoon, Bushra
last_name: Khatoon
- first_name: Vikas K.
full_name: Chaudhary, Vikas K.
last_name: Chaudhary
- first_name: Shoaib
full_name: Kamil, Shoaib
id: 185a19af-dc7d-11ea-9b2f-8eb2201959e9
last_name: Kamil
- first_name: Shabih Ul
full_name: Hasan, Shabih Ul
last_name: Hasan
- first_name: M. Siraj
full_name: Alam, M. Siraj
last_name: Alam
citation:
ama: 'Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. Enhanced mass transfer
in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical
simulation. Physics of Fluids. 2025;37(12). doi:10.1063/5.0303132'
apa: 'Khatoon, B., Chaudhary, V. K., Kamil, S., Hasan, S. U., & Alam, M. S.
(2025). Enhanced mass transfer in microgeometry using pulsating velocity inputs:
Hydrodynamic analysis and numerical simulation. Physics of Fluids. AIP
Publishing. https://doi.org/10.1063/5.0303132'
chicago: 'Khatoon, Bushra, Vikas K. Chaudhary, Shoaib Kamil, Shabih Ul Hasan, and
M. Siraj Alam. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity
Inputs: Hydrodynamic Analysis and Numerical Simulation.” Physics of Fluids.
AIP Publishing, 2025. https://doi.org/10.1063/5.0303132.'
ieee: 'B. Khatoon, V. K. Chaudhary, S. Kamil, S. U. Hasan, and M. S. Alam, “Enhanced
mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis
and numerical simulation,” Physics of Fluids, vol. 37, no. 12. AIP Publishing,
2025.'
ista: 'Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. 2025. Enhanced mass
transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis
and numerical simulation. Physics of Fluids. 37(12), 122012.'
mla: 'Khatoon, Bushra, et al. “Enhanced Mass Transfer in Microgeometry Using Pulsating
Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” Physics of
Fluids, vol. 37, no. 12, 122012, AIP Publishing, 2025, doi:10.1063/5.0303132.'
short: B. Khatoon, V.K. Chaudhary, S. Kamil, S.U. Hasan, M.S. Alam, Physics of Fluids
37 (2025).
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T10:54:15Z
day: '01'
department:
- _id: BjHo
doi: 10.1063/5.0303132
intvolume: ' 37'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
publication: Physics of Fluids
publication_identifier:
eissn:
- 1089-7666
issn:
- 1070-6631
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic
analysis and numerical simulation'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2025'
...
---
APC_amount: 7068 EUR
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20929'
abstract:
- lang: eng
text: Insulin/insulin-like growth factor signaling inhibits FOXO transcription factors
to control development, homeostasis, and aging. Here, we use proximity labeling
to identify proteins interacting with the C. elegans FOXO DAF-16. We show that
in well-fed, unstressed animals harboring active insulin signaling, DAF-16 forms
a complex with the PAR-1/MARK serine/threonine kinase, a key regulator of cell
polarity. PAR-1 inhibits DAF-16 accumulation and promotes DAF-16 phosphorylation
at S249, at a conserved motif that PAR-1/human MARK2 phosphorylates in vitro.
DAF-2 insulin-like receptor signaling stimulates DAF-16 S249 phosphorylation,
suggesting DAF-2 activates PAR-1. DAF-2 also promotes PAR-1 expression by inhibiting
DAF-16. PAR-1 knockdown, or DAF-16 S249A, prolong lifespan, whereas phosphomimetic
DAF-16 S249D suppresses the longevity of daf-2 mutants. At low insulin signaling,
DAF-16 proximity labeling highlights transcription factors, chromatin regulators,
and DNA repair proteins. One interactor, the zinc finger/homeobox protein ZFH-2/ZFHX3,
forms a complex with DAF-16 and prolongs lifespan. Our work provides entry points
for hypothesis-driven studies of FOXO function and longevity.
acknowledged_ssus:
- _id: Bio
acknowledgement: We thank de Bono lab members for helpful comments on the manuscript,
and the Mass Spec Facility at the Max Perutz Labs, notably WeiQiang Chen and Markus
Hartl, for invaluable discussions and comments on mass spec analyses of worm samples.
All LC-MS/MS analyses were performed on instruments of the Vienna BioCenter Core
Facilities (VBCF). Microscopy was supported by the Scientific Services Units (SSU)
of ISTA through resources provided by the Imaging & Optics Facility (IOF). We are
grateful to Dr. Geraldine Seydoux (Johns Hopkins University) for worm strains and
plasmids, and Dr. Seung-Jae V. Lee (KAIST) for RNAi clones. We are grateful to Ekaterina
Lashmanova for designing the daf-16::TbID::mNG::3xFLAG knock-in construct and for
her outstanding support in the lab. This work was supported by a Wellcome Investigator
Award (209504/A/17/Z) to MdB and an ISTplus Fellowship to MA (Marie Sklodowska-Curie
agreement No 754411).
article_number: '11355'
article_processing_charge: Yes
article_type: original
author:
- first_name: Murat
full_name: Artan, Murat
id: C407B586-6052-11E9-B3AE-7006E6697425
last_name: Artan
orcid: 0000-0001-8945-6992
- first_name: Hanna
full_name: Schön, Hanna
id: C8E17EDC-D7AA-11E9-B7B7-45ECE5697425
last_name: Schön
- first_name: Mario
full_name: De Bono, Mario
id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
last_name: De Bono
orcid: 0000-0001-8347-0443
citation:
ama: Artan M, Schön H, de Bono M. Proximity labeling of DAF-16 FOXO highlights aging
regulatory proteins. Nature Communications. 2025;16. doi:10.1038/s41467-025-66409-0
apa: Artan, M., Schön, H., & de Bono, M. (2025). Proximity labeling of DAF-16
FOXO highlights aging regulatory proteins. Nature Communications. Springer
Nature. https://doi.org/10.1038/s41467-025-66409-0
chicago: Artan, Murat, Hanna Schön, and Mario de Bono. “Proximity Labeling of DAF-16
FOXO Highlights Aging Regulatory Proteins.” Nature Communications. Springer
Nature, 2025. https://doi.org/10.1038/s41467-025-66409-0.
ieee: M. Artan, H. Schön, and M. de Bono, “Proximity labeling of DAF-16 FOXO highlights
aging regulatory proteins,” Nature Communications, vol. 16. Springer Nature,
2025.
ista: Artan M, Schön H, de Bono M. 2025. Proximity labeling of DAF-16 FOXO highlights
aging regulatory proteins. Nature Communications. 16, 11355.
mla: Artan, Murat, et al. “Proximity Labeling of DAF-16 FOXO Highlights Aging Regulatory
Proteins.” Nature Communications, vol. 16, 11355, Springer Nature, 2025,
doi:10.1038/s41467-025-66409-0.
short: M. Artan, H. Schön, M. de Bono, Nature Communications 16 (2025).
corr_author: '1'
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-11T00:00:00Z
date_updated: 2026-05-20T08:10:18Z
day: '11'
ddc:
- '570'
department:
- _id: MaDe
doi: 10.1038/s41467-025-66409-0
ec_funded: 1
external_id:
pmid:
- '41381452'
file:
- access_level: open_access
checksum: 748e2e003b878b85b6048d51621d6aae
content_type: application/pdf
creator: dernst
date_created: 2026-01-05T10:58:28Z
date_updated: 2026-01-05T10:58:28Z
file_id: '20941'
file_name: 2025_NatureComm_Artan.pdf
file_size: 1642352
relation: main_file
success: 1
file_date_updated: 2026-01-05T10:58:28Z
has_accepted_license: '1'
intvolume: ' 16'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 23870BE8-32DE-11EA-91FC-C7463DDC885E
grant_number: 209504/A/17/Z
name: Molecular mechanisms of neural circuit function
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20930'
abstract:
- lang: eng
text: "Context. Beta Pictoris is an A-type star that hosts a complex planetary system
with two massive gas giants and a prominent debris disc. Variable absorption lines
in its stellar spectrum have been interpreted as signatures of exocomets – comet-like
bodies transiting the star. Stellar flybys can gravitationally perturb objects
in the outer comet reservoir, altering their orbits and potentially injecting
them into the inner system, thereby triggering exocomet showers.\r\nAims. We assessed
the contribution of stellar flybys to the observed exocomet activity by reconstructing
the stellar encounter history of β Pictoris in the past and future.\r\nMethods.
We used Gaia DR3 data, supplemented with radial velocities from complementary
spectroscopic surveys, to compile a catalogue of stars currently within 80 pc
of β Pictoris. Their orbits were integrated backwards and forwards in time in
an axisymmetric Galactic potential (via the GALA package) to identify encounters
within 2 pc of the system.\r\nResults. We identified 99 416 stars currently within
80 pc of β Pictoris with resolved kinematics. Among these, 49 stars (including
the eight components of five binaries) encounter β Pictoris within 2 pc between
–1.5 Myr and +2 Myr. For four of the binaries, the centre-of-mass trajectories
also pass within 2 pc. We estimated the sample to be more than 60% complete within
0.5 Myr of today.\r\nConclusions. Despite β Pictoris being the eponym of its famous
moving group, none of the identified encounters involved its moving group members;
all are unrelated field stars. We found no encounter capable of shaping the observed
disc structures, although stellar flybys may contribute to the long-term evolution
of an Oort Cloud-like structure. Our catalogue constitutes the most complete reconstruction
of the β Pictoris encounter history to date and provides a robust foundation for
future dynamical simulations."
acknowledgement: We thank the referee for their suggestions and comments, which helped
us improve the quality and clarity of the paper. JLGM and EV acknowledge the support
from the Spanish Ministry of Science and Innovation/State Agency of Research (MCIN/AEI)
under the grant PID2021-127289-NB-I00. ST acknowledges the funding from the European
Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie
grant agreement No. 101034413. AJM acknowledges support from the Swedish National
Space Agency (Career Grant 2023-00146) and from the Swedish Research Council (Project
Grant 2022-04043). JLGM also sincerely thanks AMP for his careful final reading
of this manuscript. This work has made use of data from the European Space Agency
(ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data
Processing and Analysis Consortium (DPAC). Funding for the DPAC has been provided
by national institutions, in particular the institutions participating in the Gaia
Multilateral Agreement. We acknowledge the use of the public data products from
RAVE (https://www.rave-survey.org), GALAH (https://galah-survey.org), APOGEE ((https://www.sdss.org)
and LAMOST (http://www.lamost.org) surveys. This research has also made use of the
SIMBAD database and the VizieR catalogue access tool, operated at CDS, Strasbourg,
France, as well as the NASA Astrophysics Data System Bibliographic Services and
the arXiv pre-print server operated by Cornell University. Computational analyses
in this work relied extensively on the NumPy and SciPy libraries for numerical computing,
matplotlib and seaborn for data visualization, and the Gala package for Galactic
dynamics. This work also made use of Astropy, a community-developed core PYTHON
package and an ecosystem of tools and resources for astronomy. We thank the developers
and maintainers of these open-source resources for their invaluable contributions
to the astronomical community.
article_number: A237
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: J. L.
full_name: Gragera-Más, J. L.
last_name: Gragera-Más
- first_name: Santiago
full_name: Torres Rodriguez, Santiago
id: a8df4360-4328-11ee-8f1a-e502d0c83fc2
last_name: Torres Rodriguez
orcid: 0000-0002-3150-8988
- first_name: A. J.
full_name: Mustill, A. J.
last_name: Mustill
- first_name: E.
full_name: Villaver, E.
last_name: Villaver
citation:
ama: Gragera-Más JL, Torres Rodriguez S, Mustill AJ, Villaver E. A kinematic history
of stellar encounters with Beta Pictoris. Astronomy & Astrophysics.
2025;704. doi:10.1051/0004-6361/202555940
apa: Gragera-Más, J. L., Torres Rodriguez, S., Mustill, A. J., & Villaver, E.
(2025). A kinematic history of stellar encounters with Beta Pictoris. Astronomy
& Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202555940
chicago: Gragera-Más, J. L., Santiago Torres Rodriguez, A. J. Mustill, and E. Villaver.
“A Kinematic History of Stellar Encounters with Beta Pictoris.” Astronomy &
Astrophysics. EDP Sciences, 2025. https://doi.org/10.1051/0004-6361/202555940.
ieee: J. L. Gragera-Más, S. Torres Rodriguez, A. J. Mustill, and E. Villaver, “A
kinematic history of stellar encounters with Beta Pictoris,” Astronomy &
Astrophysics, vol. 704. EDP Sciences, 2025.
ista: Gragera-Más JL, Torres Rodriguez S, Mustill AJ, Villaver E. 2025. A kinematic
history of stellar encounters with Beta Pictoris. Astronomy & Astrophysics.
704, A237.
mla: Gragera-Más, J. L., et al. “A Kinematic History of Stellar Encounters with
Beta Pictoris.” Astronomy & Astrophysics, vol. 704, A237, EDP Sciences,
2025, doi:10.1051/0004-6361/202555940.
short: J.L. Gragera-Más, S. Torres Rodriguez, A.J. Mustill, E. Villaver, Astronomy
& Astrophysics 704 (2025).
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-02-16T12:15:07Z
day: '01'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.1051/0004-6361/202555940
ec_funded: 1
external_id:
arxiv:
- '2510.02509'
file:
- access_level: open_access
checksum: 2fb4d5a1603043aa7931a31f2c180877
content_type: application/pdf
creator: dernst
date_created: 2026-01-05T11:06:16Z
date_updated: 2026-01-05T11:06:16Z
file_id: '20942'
file_name: 2025_AstronomyAstrophysics_GrageraMas.pdf
file_size: 11021467
relation: main_file
success: 1
file_date_updated: 2026-01-05T11:06:16Z
has_accepted_license: '1'
intvolume: ' 704'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Astronomy & Astrophysics
publication_identifier:
eissn:
- 1432-0746
issn:
- 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: A kinematic history of stellar encounters with Beta Pictoris
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 704
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20932'
abstract:
- lang: eng
text: Identifying Lyman continuum (LyC) leakers at intermediate redshifts is crucial
for understanding the properties of cosmic reionizers because the opacity of the
intergalactic medium (IGM) prevents the direct detection of LyC emission from
sources during the Epoch of Reionization (EoR). In this study, we confirm two
new LyC candidate leakers at z ∼ 3 in the Abell 2744 cluster field, with absolute
escape fractions (fesc) of 0.83−0.80+0.15 and 0.74−0.70+0.23, respectively. The
LyC emission was detected using HST/WFC3/F275W and F336W imaging. These two candidate
leakers appear to be faint (MUV = −17.61 ± 0.06 and −18.22 ± 0.10), exhibit blue
UV continuum slopes (β = −2.43 ± 0.05 and −1.92 ± 0.09), have low masses (M★ ∼ 107.51 ± 0.03
and 107.17 ± 0.15 M⊙) and Lyα equivalent widths of 90 ± 3 Å and 28 ± 12 Å, respectively.
These two LyC candidate leakers were detected in a catalog of 91 spectroscopically
confirmed sources using public spectra from the JWST and/or MUSE. We also analyzed
properties that were proposed as indirect indicators of LyC emission, such as
Lyα, the O32 ratio, and M★. We created a galaxy subsample that was selected according
to these properties, stacked the LyC observations of this subsample, and assessed
the limits of the escape fractions in the stacks. We aim to enhance our understanding
of LyC escape mechanisms and improve our predictions of the LyC fesc during the
EoR by analyzing the individual candidates and the stacks in the context of the
currently limited sample of known LyC leakers at z ∼ 3.
acknowledgement: 'We acknowledge support from the National Science Foundation of China
– 12225301, INAF Large grant “Spectroscopic survey with JWST” jand from PRIN 2022
MUR project 2022CB3PJ3 – First Light And Galaxy aSsembly (FLAGS) funded by the European
Union – Next Generation EU, and Postgraduate Scholarship Program under the grant
of China Scholarship Council. P.W. and B.V. acknowledge support from the INAF Mini
Grant ‘1.05.24.07.01 RSN1: Spatially Resolved Near-IR Emission of Intermediate-Redshift
Jellyfish Galaxies’ (PI Watson). We acknowledge A. Acebron, C. Grillo, and P. Rosati
for their fundamental contribution to the strong lensing analysis and results. We
also extend our gratitude to the JWST and HST teams for their efforts in designing,
building, and operating these transformative missions.'
article_number: A328
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Y.
full_name: Liu, Y.
last_name: Liu
- first_name: Sara
full_name: Mascia, Sara
id: edaf889c-c7cd-11ef-ab1b-bb28c431bd29
last_name: Mascia
- first_name: L.
full_name: Pentericci, L.
last_name: Pentericci
- first_name: P.
full_name: Watson, P.
last_name: Watson
- first_name: A.
full_name: Alavi, A.
last_name: Alavi
- first_name: P.
full_name: Bergamini, P.
last_name: Bergamini
- first_name: M.
full_name: Bradač, M.
last_name: Bradač
- first_name: A.
full_name: Calabrò, A.
last_name: Calabrò
- first_name: K.
full_name: Glazebrook, K.
last_name: Glazebrook
- first_name: A.
full_name: Henry, A.
last_name: Henry
- first_name: M.
full_name: Llerena, M.
last_name: Llerena
- first_name: E.
full_name: Merlin, E.
last_name: Merlin
- first_name: B.
full_name: Metha, B.
last_name: Metha
- first_name: T.
full_name: Nanayakkara, T.
last_name: Nanayakkara
- first_name: L.
full_name: Napolitano, L.
last_name: Napolitano
- first_name: N.
full_name: Roy, N.
last_name: Roy
- first_name: B.
full_name: Siana, B.
last_name: Siana
- first_name: E.
full_name: Vanzella, E.
last_name: Vanzella
- first_name: B.
full_name: Vulcani, B.
last_name: Vulcani
- first_name: X.
full_name: Wang, X.
last_name: Wang
citation:
ama: Liu Y, Mascia S, Pentericci L, et al. A Lyman continuum analysis of ∼100 galaxies
at z spec∼ 3 in the Abell 2744 cluster field. Astronomy & Astrophysics.
2025;704. doi:10.1051/0004-6361/202556410
apa: Liu, Y., Mascia, S., Pentericci, L., Watson, P., Alavi, A., Bergamini, P.,
… Wang, X. (2025). A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in
the Abell 2744 cluster field. Astronomy & Astrophysics. EDP Sciences.
https://doi.org/10.1051/0004-6361/202556410
chicago: Liu, Y., Sara Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini,
M. Bradač, et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in
the Abell 2744 Cluster Field.” Astronomy & Astrophysics. EDP Sciences,
2025. https://doi.org/10.1051/0004-6361/202556410.
ieee: Y. Liu et al., “A Lyman continuum analysis of ∼100 galaxies at z spec∼
3 in the Abell 2744 cluster field,” Astronomy & Astrophysics, vol.
704. EDP Sciences, 2025.
ista: Liu Y, Mascia S, Pentericci L, Watson P, Alavi A, Bergamini P, Bradač M, Calabrò
A, Glazebrook K, Henry A, Llerena M, Merlin E, Metha B, Nanayakkara T, Napolitano
L, Roy N, Siana B, Vanzella E, Vulcani B, Wang X. 2025. A Lyman continuum analysis
of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field. Astronomy &
Astrophysics. 704, A328.
mla: Liu, Y., et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in
the Abell 2744 Cluster Field.” Astronomy & Astrophysics, vol. 704,
A328, EDP Sciences, 2025, doi:10.1051/0004-6361/202556410.
short: Y. Liu, S. Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač,
A. Calabrò, K. Glazebrook, A. Henry, M. Llerena, E. Merlin, B. Metha, T. Nanayakkara,
L. Napolitano, N. Roy, B. Siana, E. Vanzella, B. Vulcani, X. Wang, Astronomy &
Astrophysics 704 (2025).
date_created: 2026-01-04T23:01:35Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-02-16T12:14:52Z
day: '01'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.1051/0004-6361/202556410
external_id:
arxiv:
- '2507.11045'
file:
- access_level: open_access
checksum: 3e6061f3c4bfb521b3333ea4913c241a
content_type: application/pdf
creator: dernst
date_created: 2026-01-05T09:26:17Z
date_updated: 2026-01-05T09:26:17Z
file_id: '20938'
file_name: 2025_AstronomyAstrophysics_Liu.pdf
file_size: 4642530
relation: main_file
success: 1
file_date_updated: 2026-01-05T09:26:17Z
has_accepted_license: '1'
intvolume: ' 704'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
eissn:
- 1432-0746
issn:
- 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744
cluster field
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 704
year: '2025'
...
---
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20934'
abstract:
- lang: eng
text: ' Supervised learning for causal discovery from observational data often achieves
competitive performance despite seemingly avoiding the explicit assumptions that
traditional methods require for identifiability. In this work, we analyze CSIvA
(Ke et al., 2023) on bivariate causal models, a transformer architecture for amortized
inference promising to train on synthetic data and transfer to real ones. First,
we bridge the gap with identifiability theory, showing that the training distribution
implicitly defines a prior on the causal model of the test observations: consistent
with classical approaches, good performance is achieved when we have a good prior
on the test data, and the underlying model is identifiable. Second, we find that
CSIvA can not generalize to classes of causal models unseen during training: to
overcome this limitation, we theoretically and empirically analyze \textit{when}
training CSIvA on datasets generated by multiple identifiable causal models with
different structural assumptions improves its generalization at test time. Overall,
we find that amortized causal discovery still adheres to identifiability theory,
violating the previous hypothesis from Lopez-Paz et al. (2015) that supervised
learning methods could overcome its restrictions.'
alternative_title:
- TMLR
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Francesco
full_name: Montagna, Francesco
id: 353afc8e-19f4-11f0-9db9-811f1723c83f
last_name: Montagna
- first_name: Maximilian T
full_name: Cairney-Leeming, Maximilian T
id: 2214a80c-31f8-11ee-a48d-cf52cc58759b
last_name: Cairney-Leeming
- first_name: Dhanya
full_name: Sridhar, Dhanya
last_name: Sridhar
- first_name: Francesco
full_name: Locatello, Francesco
id: 26cfd52f-2483-11ee-8040-88983bcc06d4
last_name: Locatello
orcid: 0000-0002-4850-0683
citation:
ama: Montagna F, Cairney-Leeming MT, Sridhar D, Locatello F. Demystifying amortized
causal discovery with transformers. Transactions on Machine Learning Research.
2025.
apa: Montagna, F., Cairney-Leeming, M. T., Sridhar, D., & Locatello, F. (2025).
Demystifying amortized causal discovery with transformers. Transactions on
Machine Learning Research. ML Research Press.
chicago: Montagna, Francesco, Maximilian T Cairney-Leeming, Dhanya Sridhar, and
Francesco Locatello. “Demystifying Amortized Causal Discovery with Transformers.”
Transactions on Machine Learning Research. ML Research Press, 2025.
ieee: F. Montagna, M. T. Cairney-Leeming, D. Sridhar, and F. Locatello, “Demystifying
amortized causal discovery with transformers,” Transactions on Machine Learning
Research. ML Research Press, 2025.
ista: Montagna F, Cairney-Leeming MT, Sridhar D, Locatello F. 2025. Demystifying
amortized causal discovery with transformers. Transactions on Machine Learning
Research.
mla: Montagna, Francesco, et al. “Demystifying Amortized Causal Discovery with Transformers.”
Transactions on Machine Learning Research, ML Research Press, 2025.
short: F. Montagna, M.T. Cairney-Leeming, D. Sridhar, F. Locatello, Transactions
on Machine Learning Research (2025).
corr_author: '1'
date_created: 2026-01-04T23:01:35Z
date_published: 2025-12-18T00:00:00Z
date_updated: 2026-01-05T09:54:59Z
day: '18'
ddc:
- '000'
department:
- _id: FrLo
external_id:
arxiv:
- '2405.16924'
file:
- access_level: open_access
checksum: 968c471bb1f682cf823b2d4cadea8a3f
content_type: application/pdf
creator: dernst
date_created: 2026-01-05T09:51:28Z
date_updated: 2026-01-05T09:51:28Z
file_id: '20939'
file_name: 2025_PMLR_Montagna.pdf
file_size: 1030280
relation: main_file
success: 1
file_date_updated: 2026-01-05T09:51:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Transactions on Machine Learning Research
publication_identifier:
eissn:
- 2835-8856
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/francescomontagna/learning-to-induce.git
scopus_import: '1'
status: public
title: Demystifying amortized causal discovery with transformers
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20976'
abstract:
- lang: eng
text: We present an experimental demonstration of an impedance-engineered Josephson
parametric amplifier (IEJPA) fabricated in a single-step lithography process.
Impedance-engineering is implemented using a lumped-element series LC circuit.
We use a simpler lithography process where the entire device—impedance transformer
and Josephson parametric amplifier (JPA)—is patterned in a single electron beam
lithography step, followed by a double-angle Dolan-bridge technique for Al–AlOx–Al
deposition. We observe amplification with 18 dB gain over a wide 400 MHz bandwidth
centered around 5.3 GHz with added noise approaching the quantum limit, and a
saturation power of −114 dBm. To accurately explain our experimental results,
we extend existing theories for IEJPAs to incorporate the full sine nonlinearity
of both the JPA and the transformer. Our work provides a route to simpler realization
of broadband JPAs and a theoretical foundation for a regime of JPA operation that
has been less explored in literature.
acknowledgement: The authors acknowledge receiving support from the Space Technology
Cell at IISc and ISRO through the project STC-0444(2022) and the Ministry of Electronics
and Information Technology of the Government of India, under the centre of Excellence
of Quantum Technology at the Indian Institute of Science, as well as the office
of Principle Scientific Advisor, Government of India. S.H. and A.P. acknowledge
the support of the Kishore Vaigyanik Protsahan Yojana (KVPY). A.S. acknowledges
the support of a New Faculty Initiation Grant (NFIG) from IIT Madras.
article_number: '254001'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lipi
full_name: Patel, Lipi
last_name: Patel
- first_name: Samarth
full_name: Hawaldar, Samarth
id: 221708e1-1ff6-11ee-9fa6-85146607433e
last_name: Hawaldar
orcid: 0000-0002-1965-4309
- first_name: Aditya
full_name: Panikkar, Aditya
last_name: Panikkar
- first_name: Athreya
full_name: Shankar, Athreya
last_name: Shankar
- first_name: Baladitya
full_name: Suri, Baladitya
last_name: Suri
citation:
ama: Patel L, Hawaldar S, Panikkar A, Shankar A, Suri B. Impedance-engineered Josephson
parametric amplifier with single-step lithography. Applied Physics Letters.
2025;127(25). doi:10.1063/5.0290636
apa: Patel, L., Hawaldar, S., Panikkar, A., Shankar, A., & Suri, B. (2025).
Impedance-engineered Josephson parametric amplifier with single-step lithography.
Applied Physics Letters. AIP Publishing. https://doi.org/10.1063/5.0290636
chicago: Patel, Lipi, Samarth Hawaldar, Aditya Panikkar, Athreya Shankar, and Baladitya
Suri. “Impedance-Engineered Josephson Parametric Amplifier with Single-Step Lithography.”
Applied Physics Letters. AIP Publishing, 2025. https://doi.org/10.1063/5.0290636.
ieee: L. Patel, S. Hawaldar, A. Panikkar, A. Shankar, and B. Suri, “Impedance-engineered
Josephson parametric amplifier with single-step lithography,” Applied Physics
Letters, vol. 127, no. 25. AIP Publishing, 2025.
ista: Patel L, Hawaldar S, Panikkar A, Shankar A, Suri B. 2025. Impedance-engineered
Josephson parametric amplifier with single-step lithography. Applied Physics Letters.
127(25), 254001.
mla: Patel, Lipi, et al. “Impedance-Engineered Josephson Parametric Amplifier with
Single-Step Lithography.” Applied Physics Letters, vol. 127, no. 25, 254001,
AIP Publishing, 2025, doi:10.1063/5.0290636.
short: L. Patel, S. Hawaldar, A. Panikkar, A. Shankar, B. Suri, Applied Physics
Letters 127 (2025).
date_created: 2026-01-11T23:01:34Z
date_published: 2025-12-22T00:00:00Z
date_updated: 2026-01-12T09:57:53Z
day: '22'
department:
- _id: JoFi
doi: 10.1063/5.0290636
external_id:
arxiv:
- '2507.09298'
intvolume: ' 127'
issue: '25'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2507.09298
month: '12'
oa: 1
oa_version: Preprint
publication: Applied Physics Letters
publication_identifier:
eissn:
- 1077-3118
issn:
- 0003-6951
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Impedance-engineered Josephson parametric amplifier with single-step lithography
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 127
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '20977'
abstract:
- lang: eng
text: Hippocampal sharp-wave ripples (SPW-Rs) are high-frequency oscillations critical
for memory consolidation. Despite extensive characterization in rodents, their
detection in humans is limited by coarse spatial sampling, interictal epileptiform
discharges (IEDs), and a lack of consensus on human ripple localization and morphology.
Here, we demonstrate that mouse and human hippocampal ripples share spatial, spectral
and temporal features, which are clearly distinct from IEDs. In recordings from
male APP/PS1 mice, SPW-Rs were distinguishable from IEDs by multiple criteria.
Hippocampal ripples recorded during NREM sleep in female and male surgical epilepsy
patients exhibited similar narrowband frequency peaks and multiple ripple cycles
in the CA1 and subiculum regions. Conversely, IEDs showed a broad spatial extent
and wide-band frequency power. We developed a semi-automated, ripple curation
toolbox (ripmap) to separate event waveforms by low-dimensional embedding to reduce
false-positive rate in selected ripple channels. Our approach improves ripple
detection and provides a firm foundation for future human memory research.
acknowledgement: We thank Karl Rössler and Sebastian Brandner for the human SEEG implantations;
Katja Kobow for providing the histopathological findings of the patients; Jay Jeschke
for help with human electrode localization; Esha Brahmbhatt and Deren Aykan for
help with animal habituation; Mursel Karadas for the rodent treadmill design; Nicholas
Paleologos, Noam Nitzan, Michael D Hadler and Samuel McKenzie for rating events
in a human ripple survey included in a previous version of the manuscript; Nicholas
Paleologos for sharing NYU iEEG data for validating UMAP parameters; Julio Esparza
for help on the topological analysis through discussions; Thomas Hainmüller, Yiyao
Zhang and Mursel Karadas for feedback on the manuscript. We would like to acknowledge
Corticale SRL (Genoa, Italy) for providing the SiNAPS probes, and NeuroNexus (Ann
Arbor, MI) for their contribution of the data acquisition system and Radiens software.
We further acknowledge both Corticale and NeuroNexus for training and support making
this research possible. This work was supported by the German Research Foundation
(DFG; Walter Benjamin Fellowship MA 10301/1-1, A.M.), NYU Langone Health Finding
a Cure for Epilepsy and Seizures (FACES, A.M.), the NOMIS Fellowship (A.N.-O.),
the National Institutes of Health (R01NS127954, K23NS104252, A.L.; MH122391, U19NS107616,
R01MH139216 G.B.,), and the NYU Department of Neurology (A.L.).
article_number: '11636'
article_processing_charge: Yes
article_type: original
author:
- first_name: Anna
full_name: Maslarova, Anna
last_name: Maslarova
- first_name: Jiyun N.
full_name: Shin, Jiyun N.
last_name: Shin
- first_name: Andrea C
full_name: Navas Olivé, Andrea C
id: 739d26c9-52e8-11ee-8d72-f14d3893b4ce
last_name: Navas Olivé
orcid: 0000-0002-9280-8597
- first_name: Mihály
full_name: Vöröslakos, Mihály
last_name: Vöröslakos
- first_name: Hajo
full_name: Hamer, Hajo
last_name: Hamer
- first_name: Arnd
full_name: Doerfler, Arnd
last_name: Doerfler
- first_name: Simon
full_name: Henin, Simon
last_name: Henin
- first_name: György
full_name: Buzsáki, György
last_name: Buzsáki
- first_name: Anli
full_name: Liu, Anli
last_name: Liu
citation:
ama: Maslarova A, Shin JN, Navas Olivé AC, et al. Spatiotemporal patterns differentiate
hippocampal sharp-wave ripples from interictal epileptiform discharges in mice
and humans. Nature Communications. 2025;16. doi:10.1038/s41467-025-66562-6
apa: Maslarova, A., Shin, J. N., Navas Olivé, A. C., Vöröslakos, M., Hamer, H.,
Doerfler, A., … Liu, A. (2025). Spatiotemporal patterns differentiate hippocampal
sharp-wave ripples from interictal epileptiform discharges in mice and humans.
Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-025-66562-6
chicago: Maslarova, Anna, Jiyun N. Shin, Andrea C Navas Olivé, Mihály Vöröslakos,
Hajo Hamer, Arnd Doerfler, Simon Henin, György Buzsáki, and Anli Liu. “Spatiotemporal
Patterns Differentiate Hippocampal Sharp-Wave Ripples from Interictal Epileptiform
Discharges in Mice and Humans.” Nature Communications. Springer Nature,
2025. https://doi.org/10.1038/s41467-025-66562-6.
ieee: A. Maslarova et al., “Spatiotemporal patterns differentiate hippocampal
sharp-wave ripples from interictal epileptiform discharges in mice and humans,”
Nature Communications, vol. 16. Springer Nature, 2025.
ista: Maslarova A, Shin JN, Navas Olivé AC, Vöröslakos M, Hamer H, Doerfler A, Henin
S, Buzsáki G, Liu A. 2025. Spatiotemporal patterns differentiate hippocampal sharp-wave
ripples from interictal epileptiform discharges in mice and humans. Nature Communications.
16, 11636.
mla: Maslarova, Anna, et al. “Spatiotemporal Patterns Differentiate Hippocampal
Sharp-Wave Ripples from Interictal Epileptiform Discharges in Mice and Humans.”
Nature Communications, vol. 16, 11636, Springer Nature, 2025, doi:10.1038/s41467-025-66562-6.
short: A. Maslarova, J.N. Shin, A.C. Navas Olivé, M. Vöröslakos, H. Hamer, A. Doerfler,
S. Henin, G. Buzsáki, A. Liu, Nature Communications 16 (2025).
date_created: 2026-01-11T23:01:35Z
date_published: 2025-12-30T00:00:00Z
date_updated: 2026-01-12T09:31:56Z
day: '30'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1038/s41467-025-66562-6
external_id:
pmid:
- '39975118'
file:
- access_level: open_access
checksum: a8a1670e197484382e087be60f643945
content_type: application/pdf
creator: dernst
date_created: 2026-01-12T09:30:15Z
date_updated: 2026-01-12T09:30:15Z
file_id: '20978'
file_name: 2025_NatureComm_Maslarova.pdf
file_size: 7629997
relation: main_file
success: 1
file_date_updated: 2026-01-12T09:30:15Z
has_accepted_license: '1'
intvolume: ' 16'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9B861AAC-BA93-11EA-9121-9846C619BF3A
name: NOMIS Fellowship Program
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Spatiotemporal patterns differentiate hippocampal sharp-wave ripples from interictal
epileptiform discharges in mice and humans
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2025'
...