[{"day":"01","author":[{"id":"4197AD04-F248-11E8-B48F-1D18A9856A87","first_name":"Marcin M","last_name":"Napiórkowski","full_name":"Napiórkowski, Marcin M"},{"last_name":"Reuvers","full_name":"Reuvers, Robin","first_name":"Robin"},{"last_name":"Solovej","full_name":"Solovej, Jan Philip","first_name":"Jan Philip"}],"issue":"3","main_file_link":[{"url":"https://arxiv.org/abs/1511.05935","open_access":"1"}],"oa_version":"Preprint","abstract":[{"lang":"eng","text":"The Bogoliubov free energy functional is analysed. The functional serves as a model of a translation-invariant Bose gas at positive temperature. We prove the existence of minimizers in the case of repulsive interactions given by a sufficiently regular two-body potential. Furthermore, we prove the existence of a phase transition in this model and provide its phase diagram."}],"date_published":"2018-09-01T00:00:00Z","external_id":{"isi":["000435367300003"],"arxiv":["1511.05935"]},"publication":"Archive for Rational Mechanics and Analysis","year":"2018","publication_identifier":{"issn":["0003-9527"],"eissn":["1432-0673"]},"doi":"10.1007/s00205-018-1232-6","date_created":"2019-02-14T13:40:53Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","language":[{"iso":"eng"}],"isi":1,"type":"journal_article","title":"The Bogoliubov free energy functional I: Existence of minimizers and phase diagram","project":[{"grant_number":"P27533_N27","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","_id":"25C878CE-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"publication_status":"published","article_processing_charge":"No","page":"1037-1090","citation":{"ieee":"M. M. Napiórkowski, R. Reuvers, and J. P. Solovej, “The Bogoliubov free energy functional I: Existence of minimizers and phase diagram,” Archive for Rational Mechanics and Analysis, vol. 229, no. 3. Springer Nature, pp. 1037–1090, 2018.","chicago":"Napiórkowski, Marcin M, Robin Reuvers, and Jan Philip Solovej. “The Bogoliubov Free Energy Functional I: Existence of Minimizers and Phase Diagram.” Archive for Rational Mechanics and Analysis. Springer Nature, 2018. https://doi.org/10.1007/s00205-018-1232-6.","ama":"Napiórkowski MM, Reuvers R, Solovej JP. The Bogoliubov free energy functional I: Existence of minimizers and phase diagram. Archive for Rational Mechanics and Analysis. 2018;229(3):1037-1090. doi:10.1007/s00205-018-1232-6","short":"M.M. Napiórkowski, R. Reuvers, J.P. Solovej, Archive for Rational Mechanics and Analysis 229 (2018) 1037–1090.","ista":"Napiórkowski MM, Reuvers R, Solovej JP. 2018. The Bogoliubov free energy functional I: Existence of minimizers and phase diagram. Archive for Rational Mechanics and Analysis. 229(3), 1037–1090.","mla":"Napiórkowski, Marcin M., et al. “The Bogoliubov Free Energy Functional I: Existence of Minimizers and Phase Diagram.” Archive for Rational Mechanics and Analysis, vol. 229, no. 3, Springer Nature, 2018, pp. 1037–90, doi:10.1007/s00205-018-1232-6.","apa":"Napiórkowski, M. M., Reuvers, R., & Solovej, J. P. (2018). The Bogoliubov free energy functional I: Existence of minimizers and phase diagram. Archive for Rational Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-018-1232-6"},"volume":229,"quality_controlled":"1","publisher":"Springer Nature","intvolume":" 229","month":"09","date_updated":"2025-04-15T08:26:15Z","oa":1,"department":[{"_id":"RoSe"}],"scopus_import":"1","arxiv":1,"_id":"6002","status":"public"},{"year":"2018","doi":"10.1007/s10711-017-0265-6","date_created":"2018-12-11T11:47:57Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","isi":1,"language":[{"iso":"eng"}],"project":[{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"type":"journal_article","title":"3-Webs generated by confocal conics and circles","article_type":"original","publication_status":"published","day":"01","author":[{"orcid":"0000-0002-2548-617X","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","first_name":"Arseniy","last_name":"Akopyan","full_name":"Akopyan, Arseniy"}],"issue":"1","oa_version":"Published Version","abstract":[{"lang":"eng","text":"We consider families of confocal conics and two pencils of Apollonian circles having the same foci. We will show that these families of curves generate trivial 3-webs and find the exact formulas describing them."}],"external_id":{"isi":["000431418800004"]},"file":[{"date_updated":"2020-07-14T12:47:44Z","creator":"kschuh","file_size":1140860,"content_type":"application/pdf","date_created":"2020-01-03T11:35:08Z","checksum":"1febcfc1266486053a069e3425ea3713","access_level":"open_access","relation":"main_file","file_name":"2018_Springer_Akopyan.pdf","file_id":"7222"}],"date_published":"2018-06-01T00:00:00Z","publication":"Geometriae Dedicata","date_updated":"2025-04-15T06:50:29Z","oa":1,"publist_id":"7014","ddc":["510"],"file_date_updated":"2020-07-14T12:47:44Z","department":[{"_id":"HeEd"}],"scopus_import":"1","corr_author":"1","_id":"692","status":"public","article_processing_charge":"Yes (via OA deal)","ec_funded":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"page":"55 - 64","has_accepted_license":"1","citation":{"ista":"Akopyan A. 2018. 3-Webs generated by confocal conics and circles. Geometriae Dedicata. 194(1), 55–64.","short":"A. Akopyan, Geometriae Dedicata 194 (2018) 55–64.","mla":"Akopyan, Arseniy. “3-Webs Generated by Confocal Conics and Circles.” Geometriae Dedicata, vol. 194, no. 1, Springer, 2018, pp. 55–64, doi:10.1007/s10711-017-0265-6.","apa":"Akopyan, A. (2018). 3-Webs generated by confocal conics and circles. Geometriae Dedicata. Springer. https://doi.org/10.1007/s10711-017-0265-6","ieee":"A. Akopyan, “3-Webs generated by confocal conics and circles,” Geometriae Dedicata, vol. 194, no. 1. Springer, pp. 55–64, 2018.","ama":"Akopyan A. 3-Webs generated by confocal conics and circles. Geometriae Dedicata. 2018;194(1):55-64. doi:10.1007/s10711-017-0265-6","chicago":"Akopyan, Arseniy. “3-Webs Generated by Confocal Conics and Circles.” Geometriae Dedicata. Springer, 2018. https://doi.org/10.1007/s10711-017-0265-6."},"volume":194,"quality_controlled":"1","publisher":"Springer","intvolume":" 194","month":"06"},{"publist_id":"7430","date_updated":"2023-09-11T14:10:25Z","status":"public","_id":"397","scopus_import":"1","department":[{"_id":"DaAl"}],"quality_controlled":"1","volume":53,"citation":{"mla":"Arbel Raviv, Maya, and Trevor A. Brown. Harnessing Epoch-Based Reclamation for Efficient Range Queries. Vol. 53, no. 1, ACM, 2018, pp. 14–27, doi:10.1145/3178487.3178489.","apa":"Arbel Raviv, M., & Brown, T. A. (2018). Harnessing epoch-based reclamation for efficient range queries (Vol. 53, pp. 14–27). Presented at the PPoPP: Principles and Practice of Parallel Programming, Vienna, Austria: ACM. https://doi.org/10.1145/3178487.3178489","ista":"Arbel Raviv M, Brown TA. 2018. Harnessing epoch-based reclamation for efficient range queries. PPoPP: Principles and Practice of Parallel Programming, PPoPP, vol. 53, 14–27.","short":"M. Arbel Raviv, T.A. Brown, in:, ACM, 2018, pp. 14–27.","chicago":"Arbel Raviv, Maya, and Trevor A Brown. “Harnessing Epoch-Based Reclamation for Efficient Range Queries,” 53:14–27. ACM, 2018. https://doi.org/10.1145/3178487.3178489.","ama":"Arbel Raviv M, Brown TA. Harnessing epoch-based reclamation for efficient range queries. In: Vol 53. ACM; 2018:14-27. doi:10.1145/3178487.3178489","ieee":"M. Arbel Raviv and T. A. Brown, “Harnessing epoch-based reclamation for efficient range queries,” presented at the PPoPP: Principles and Practice of Parallel Programming, Vienna, Austria, 2018, vol. 53, no. 1, pp. 14–27."},"page":"14 - 27","article_processing_charge":"No","month":"02","intvolume":" 53","publisher":"ACM","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","conference":{"end_date":"2018-02-28","location":"Vienna, Austria","start_date":"2018-02-24","name":"PPoPP: Principles and Practice of Parallel Programming"},"alternative_title":["PPoPP"],"date_created":"2018-12-11T11:46:14Z","doi":"10.1145/3178487.3178489","year":"2018","publication_identifier":{"isbn":["978-1-4503-4982-6"]},"publication_status":"published","type":"conference","title":"Harnessing epoch-based reclamation for efficient range queries","language":[{"iso":"eng"}],"isi":1,"oa_version":"None","issue":"1","author":[{"last_name":"Arbel Raviv","full_name":"Arbel Raviv, Maya","first_name":"Maya"},{"first_name":"Trevor A","id":"3569F0A0-F248-11E8-B48F-1D18A9856A87","full_name":"Brown, Trevor A","last_name":"Brown"}],"day":"10","external_id":{"isi":["000446161100002"]},"date_published":"2018-02-10T00:00:00Z","abstract":[{"text":"Concurrent sets with range query operations are highly desirable in applications such as in-memory databases. However, few set implementations offer range queries. Known techniques for augmenting data structures with range queries (or operations that can be used to build range queries) have numerous problems that limit their usefulness. For example, they impose high overhead or rely heavily on garbage collection. In this work, we show how to augment data structures with highly efficient range queries, without relying on garbage collection. We identify a property of epoch-based memory reclamation algorithms that makes them ideal for implementing range queries, and produce three algorithms, which use locks, transactional memory and lock-free techniques, respectively. Our algorithms are applicable to more data structures than previous work, and are shown to be highly efficient on a large scale Intel system. ","lang":"eng"}]},{"month":"06","publisher":"Elsevier","intvolume":" 150","citation":{"chicago":"Kubiasová, Karolina, Václav Mik, Jaroslav Nisler, Martin Hönig, Alexandra Husičková, Lukáš Spíchal, Zuzana Pěkná, et al. “Design, Synthesis and Perception of Fluorescently Labeled Isoprenoid Cytokinins.” Phytochemistry. Elsevier, 2018. https://doi.org/10.1016/j.phytochem.2018.02.015.","ama":"Kubiasová K, Mik V, Nisler J, et al. Design, synthesis and perception of fluorescently labeled isoprenoid cytokinins. Phytochemistry. 2018;150:1-11. doi:10.1016/j.phytochem.2018.02.015","ieee":"K. Kubiasová et al., “Design, synthesis and perception of fluorescently labeled isoprenoid cytokinins,” Phytochemistry, vol. 150. Elsevier, pp. 1–11, 2018.","mla":"Kubiasová, Karolina, et al. “Design, Synthesis and Perception of Fluorescently Labeled Isoprenoid Cytokinins.” Phytochemistry, vol. 150, Elsevier, 2018, pp. 1–11, doi:10.1016/j.phytochem.2018.02.015.","apa":"Kubiasová, K., Mik, V., Nisler, J., Hönig, M., Husičková, A., Spíchal, L., … Plíhalová, L. (2018). Design, synthesis and perception of fluorescently labeled isoprenoid cytokinins. Phytochemistry. Elsevier. https://doi.org/10.1016/j.phytochem.2018.02.015","ista":"Kubiasová K, Mik V, Nisler J, Hönig M, Husičková A, Spíchal L, Pěkná Z, Šamajová O, Doležal K, Plíhal O, Benková E, Strnad M, Plíhalová L. 2018. Design, synthesis and perception of fluorescently labeled isoprenoid cytokinins. Phytochemistry. 150, 1–11.","short":"K. Kubiasová, V. Mik, J. Nisler, M. Hönig, A. Husičková, L. Spíchal, Z. Pěkná, O. Šamajová, K. Doležal, O. Plíhal, E. Benková, M. Strnad, L. Plíhalová, Phytochemistry 150 (2018) 1–11."},"volume":150,"quality_controlled":"1","article_processing_charge":"No","page":"1-11","_id":"407","status":"public","department":[{"_id":"EvBe"}],"scopus_import":"1","publist_id":"7422","date_updated":"2023-09-11T12:53:11Z","date_published":"2018-06-01T00:00:00Z","external_id":{"isi":["000435623400001"]},"publication":"Phytochemistry","abstract":[{"text":"Isoprenoid cytokinins play a number of crucial roles in the regulation of plant growth and development. To study cytokinin receptor properties in plants, we designed and prepared fluorescent derivatives of 6-[(3-methylbut-2-en-1-yl)amino]purine (N6-isopentenyladenine, iP) with several fluorescent labels attached to the C2 or N9 atom of the purine moiety via a 2- or 6-carbon linker. The fluorescent labels included dansyl (DS), fluorescein (FC), 7-nitrobenzofurazan (NBD), rhodamine B (RhoB), coumarin (Cou), 7-(diethylamino)coumarin (DEAC) and cyanine 5 dye (Cy5). All prepared compounds were screened for affinity for the Arabidopsis thaliana cytokinin receptor (CRE1/AHK4). Although the attachment of the fluorescent labels to iP via the linkers mostly disrupted binding to the receptor, several fluorescent derivatives interacted well. For this reason, three derivatives, two rhodamine B and one 4-chloro-7-nitrobenzofurazan labeled iP were tested for their interaction with CRE1/AHK4 and Zea mays cytokinin receptors in detail. We further showed that the three derivatives were able to activate transcription of cytokinin response regulator ARR5 in Arabidopsis seedlings. The activity of fluorescently labeled cytokinins was compared with corresponding 6-dimethylaminopurine fluorescently labeled negative controls. Selected rhodamine B C2-labeled compounds 17, 18 and 4-chloro-7-nitrobenzofurazan N9-labeled compound 28 and their respective negative controls (19, 20 and 29, respectively) were used for in planta staining experiments in Arabidopsis thaliana cell suspension culture using live cell confocal microscopy.","lang":"eng"}],"oa_version":"None","day":"01","author":[{"first_name":"Karolina","last_name":"Kubiasová","full_name":"Kubiasová, Karolina"},{"first_name":"Václav","last_name":"Mik","full_name":"Mik, Václav"},{"first_name":"Jaroslav","full_name":"Nisler, Jaroslav","last_name":"Nisler"},{"full_name":"Hönig, Martin","last_name":"Hönig","first_name":"Martin"},{"first_name":"Alexandra","last_name":"Husičková","full_name":"Husičková, Alexandra"},{"first_name":"Lukáš","last_name":"Spíchal","full_name":"Spíchal, Lukáš"},{"last_name":"Pěkná","full_name":"Pěkná, Zuzana","first_name":"Zuzana"},{"first_name":"Olga","full_name":"Šamajová, Olga","last_name":"Šamajová"},{"first_name":"Karel","full_name":"Doležal, Karel","last_name":"Doležal"},{"first_name":"Ondřej","full_name":"Plíhal, Ondřej","last_name":"Plíhal"},{"last_name":"Benková","full_name":"Benková, Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","orcid":"0000-0002-8510-9739"},{"first_name":"Miroslav","last_name":"Strnad","full_name":"Strnad, Miroslav"},{"full_name":"Plíhalová, Lucie","last_name":"Plíhalová","first_name":"Lucie"}],"publication_status":"published","isi":1,"language":[{"iso":"eng"}],"type":"journal_article","title":"Design, synthesis and perception of fluorescently labeled isoprenoid cytokinins","date_created":"2018-12-11T11:46:18Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","year":"2018","doi":"10.1016/j.phytochem.2018.02.015","acknowledgement":"This work was supported by the Ministry of Education Youth and Sports, Czech Republic (grant LO1204 from the National Program of Sustainability I and Agricultural Research ) and by Czech Science Foundation grants 16-04184S , 501/10/1450 and 13-39982S and by IGA projects IGA_PrF_2018_033 and IGA_PrF_2018_023 . We would like to thank Jarmila Balonová, Olga Hustáková and Miroslava Šubová for their skillful technical assistance and Mgr. Tomáš Pospíšil, Ph.D. for his measurement of 1 H NMR and analysis of some 2D NMR spectral data. \r\n"},{"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_created":"2018-12-11T11:46:19Z","doi":"10.1038/s41598-018-23247-z","article_number":"5184","year":"2018","publication_status":"published","type":"journal_article","title":"A micro-CT-based method for quantitative brain lesion characterization and electrode localization","isi":1,"language":[{"iso":"eng"}],"oa_version":"Published Version","issue":"1","author":[{"first_name":"Javier","full_name":"Masís, Javier","last_name":"Masís"},{"first_name":"David","full_name":"Mankus, David","last_name":"Mankus"},{"full_name":"Wolff, Steffen","last_name":"Wolff","first_name":"Steffen"},{"last_name":"Guitchounts","full_name":"Guitchounts, Grigori","first_name":"Grigori"},{"orcid":"0000-0002-3937-1330","full_name":"Jösch, Maximilian A","last_name":"Jösch","first_name":"Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Cox","full_name":"Cox, David","first_name":"David"}],"day":"26","publication":"Scientific Reports","external_id":{"isi":["000428234100005"]},"date_published":"2018-03-26T00:00:00Z","file":[{"checksum":"653fcb852f899c75b00ceee2a670d738","relation":"main_file","access_level":"open_access","file_name":"IST-2018-994-v1+1_2018_Joesch_A-micro-CT-based.pdf","file_id":"4831","date_updated":"2020-07-14T12:46:23Z","creator":"system","file_size":2359430,"content_type":"application/pdf","date_created":"2018-12-12T10:10:42Z"}],"abstract":[{"text":"Lesion verification and quantification is traditionally done via histological examination of sectioned brains, a time-consuming process that relies heavily on manual estimation. Such methods are particularly problematic in posterior cortical regions (e.g. visual cortex), where sectioning leads to significant damage and distortion of tissue. Even more challenging is the post hoc localization of micro-electrodes, which relies on the same techniques, suffers from similar drawbacks and requires even higher precision. Here, we propose a new, simple method for quantitative lesion characterization and electrode localization that is less labor-intensive and yields more detailed results than conventional methods. We leverage staining techniques standard in electron microscopy with the use of commodity micro-CT imaging. We stain whole rat and zebra finch brains in osmium tetroxide, embed these in resin and scan entire brains in a micro-CT machine. The scans result in 3D reconstructions of the brains with section thickness dependent on sample size (12–15 and 5–6 microns for rat and zebra finch respectively) that can be segmented manually or automatically. Because the method captures the entire intact brain volume, comparisons within and across studies are more tractable, and the extent of lesions and electrodes may be studied with higher accuracy than with current methods.","lang":"eng"}],"publist_id":"7419","oa":1,"date_updated":"2023-09-08T11:48:39Z","status":"public","_id":"410","scopus_import":"1","department":[{"_id":"MaJö"}],"file_date_updated":"2020-07-14T12:46:23Z","ddc":["571","572"],"quality_controlled":"1","pubrep_id":"994","volume":8,"citation":{"mla":"Masís, Javier, et al. “A Micro-CT-Based Method for Quantitative Brain Lesion Characterization and Electrode Localization.” Scientific Reports, vol. 8, no. 1, 5184, Nature Publishing Group, 2018, doi:10.1038/s41598-018-23247-z.","apa":"Masís, J., Mankus, D., Wolff, S., Guitchounts, G., Jösch, M. A., & Cox, D. (2018). A micro-CT-based method for quantitative brain lesion characterization and electrode localization. Scientific Reports. Nature Publishing Group. https://doi.org/10.1038/s41598-018-23247-z","short":"J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M.A. Jösch, D. Cox, Scientific Reports 8 (2018).","ista":"Masís J, Mankus D, Wolff S, Guitchounts G, Jösch MA, Cox D. 2018. A micro-CT-based method for quantitative brain lesion characterization and electrode localization. Scientific Reports. 8(1), 5184.","ama":"Masís J, Mankus D, Wolff S, Guitchounts G, Jösch MA, Cox D. A micro-CT-based method for quantitative brain lesion characterization and electrode localization. Scientific Reports. 2018;8(1). doi:10.1038/s41598-018-23247-z","chicago":"Masís, Javier, David Mankus, Steffen Wolff, Grigori Guitchounts, Maximilian A Jösch, and David Cox. “A Micro-CT-Based Method for Quantitative Brain Lesion Characterization and Electrode Localization.” Scientific Reports. Nature Publishing Group, 2018. https://doi.org/10.1038/s41598-018-23247-z.","ieee":"J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M. A. Jösch, and D. Cox, “A micro-CT-based method for quantitative brain lesion characterization and electrode localization,” Scientific Reports, vol. 8, no. 1. Nature Publishing Group, 2018."},"has_accepted_license":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"article_processing_charge":"No","month":"03","intvolume":" 8","publisher":"Nature Publishing Group"},{"date_updated":"2025-04-15T08:11:42Z","year":"2018","publication_identifier":{"issn":["2664-1690"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","alternative_title":["IST Austria Technical Report"],"date_created":"2018-12-12T11:39:26Z","related_material":{"record":[{"relation":"later_version","status":"public","id":"6175"}]},"oa":1,"scopus_import":1,"title":"Cost analysis of nondeterministic probabilistic programs","type":"technical_report","language":[{"iso":"eng"}],"ddc":["000"],"file_date_updated":"2020-07-14T12:47:00Z","status":"public","publication_status":"published","corr_author":"1","_id":"5457","author":[{"full_name":"Anonymous, 1","last_name":"Anonymous","first_name":"1"},{"full_name":"Anonymous, 2","last_name":"Anonymous","first_name":"2"},{"last_name":"Anonymous","full_name":"Anonymous, 3","first_name":"3"},{"first_name":"4","last_name":"Anonymous","full_name":"Anonymous, 4"},{"last_name":"Anonymous","full_name":"Anonymous, 5","first_name":"5"},{"full_name":"Anonymous, 6","last_name":"Anonymous","first_name":"6"}],"page":"27","day":"11","pubrep_id":"1066","oa_version":"Published Version","has_accepted_license":"1","citation":{"ama":"Anonymous 1, Anonymous 2, Anonymous 3, Anonymous 4, Anonymous 5, Anonymous 6. Cost Analysis of Nondeterministic Probabilistic Programs. IST Austria; 2018.","chicago":"Anonymous, 1, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, and 6 Anonymous. Cost Analysis of Nondeterministic Probabilistic Programs. IST Austria, 2018.","ieee":"1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, and 6 Anonymous, Cost analysis of nondeterministic probabilistic programs. IST Austria, 2018.","apa":"Anonymous, 1, Anonymous, 2, Anonymous, 3, Anonymous, 4, Anonymous, 5, & Anonymous, 6. (2018). Cost analysis of nondeterministic probabilistic programs. IST Austria.","mla":"Anonymous, 1, et al. Cost Analysis of Nondeterministic Probabilistic Programs. IST Austria, 2018.","short":"1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, 6 Anonymous, Cost Analysis of Nondeterministic Probabilistic Programs, IST Austria, 2018.","ista":"Anonymous 1, Anonymous 2, Anonymous 3, Anonymous 4, Anonymous 5, Anonymous 6. 2018. Cost analysis of nondeterministic probabilistic programs, IST Austria, 27p."},"abstract":[{"lang":"eng","text":"We consider the problem of expected cost analysis over nondeterministic probabilistic programs, which aims at automated methods for analyzing the resource-usage of such programs. Previous approaches for this problem could only handle nonnegative bounded costs. However, in many scenarios, such as queuing networks or analysis of cryptocurrency protocols, both positive and negative costs are necessary and the costs are unbounded as well.\r\n\r\nIn this work, we present a sound and efficient approach to obtain polynomial bounds on the expected accumulated cost of nondeterministic probabilistic programs. Our approach can handle (a) general positive and negative costs with bounded updates in variables; and (b) nonnegative costs with general updates to variables. We show that several natural examples which could not be handled by previous approaches are captured in our framework.\r\n\r\nMoreover, our approach leads to an efficient polynomial-time algorithm, while no previous approach for cost analysis of probabilistic programs could guarantee polynomial runtime. Finally, we show the effectiveness of our approach by presenting experimental results on a variety of programs, motivated by real-world applications, for which we efficiently synthesize tight resource-usage bounds."}],"publisher":"IST Austria","month":"11","file":[{"checksum":"ba3adafd36fe200385ccda583063b9eb","relation":"main_file","access_level":"open_access","file_id":"5493","file_name":"IST-2018-1066-v1+1_techreport.pdf","date_updated":"2020-07-14T12:47:00Z","creator":"system","file_size":4202966,"date_created":"2018-12-12T11:53:32Z","content_type":"application/pdf"},{"checksum":"6cf3a19164bb8e5048a9c8c84dfd9fa3","access_level":"closed","relation":"main_file","file_name":"authors-names.txt","file_id":"6402","date_updated":"2020-07-14T12:47:00Z","creator":"dernst","file_size":322,"date_created":"2019-05-10T13:22:12Z","content_type":"text/plain"}],"date_published":"2018-11-11T00:00:00Z"},{"language":[{"iso":"eng"}],"title":"Predicting age from the transcriptome of human dermal fibroblasts","type":"journal_article","article_type":"original","publication_status":"published","year":"2018","article_number":"221","publication_identifier":{"issn":["1474-760X"]},"doi":"10.1186/s13059-018-1599-6","date_created":"2022-04-07T07:45:40Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Biomarkers of aging can be used to assess the health of individuals and to study aging and age-related diseases. We generate a large dataset of genome-wide RNA-seq profiles of human dermal fibroblasts from 133 people aged 1 to 94 years old to test whether signatures of aging are encoded within the transcriptome. We develop an ensemble machine learning method that predicts age to a median error of 4 years, outperforming previous methods used to predict age. The ensemble was further validated by testing it on ten progeria patients, and our method is the only one that predicts accelerated aging in these patients."}],"date_published":"2018-12-20T00:00:00Z","external_id":{"pmid":["30567591"]},"publication":"Genome Biology","day":"20","author":[{"last_name":"Fleischer","full_name":"Fleischer, Jason G.","first_name":"Jason G."},{"first_name":"Roberta","last_name":"Schulte","full_name":"Schulte, Roberta"},{"last_name":"Tsai","full_name":"Tsai, Hsiao H.","first_name":"Hsiao H."},{"first_name":"Swati","last_name":"Tyagi","full_name":"Tyagi, Swati"},{"first_name":"Arkaitz","full_name":"Ibarra, Arkaitz","last_name":"Ibarra"},{"first_name":"Maxim N.","last_name":"Shokhirev","full_name":"Shokhirev, Maxim N."},{"first_name":"Ling","last_name":"Huang","full_name":"Huang, Ling"},{"orcid":"0000-0002-2111-992X","last_name":"HETZER","full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W"},{"first_name":"Saket","full_name":"Navlakha, Saket","last_name":"Navlakha"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1186/s13059-018-1599-6"}],"pmid":1,"oa_version":"Published Version","scopus_import":"1","_id":"11064","status":"public","date_updated":"2024-10-14T11:20:00Z","oa":1,"publisher":"BioMed Central","intvolume":" 19","extern":"1","month":"12","article_processing_charge":"No","citation":{"ama":"Fleischer JG, Schulte R, Tsai HH, et al. Predicting age from the transcriptome of human dermal fibroblasts. Genome Biology. 2018;19. doi:10.1186/s13059-018-1599-6","chicago":"Fleischer, Jason G., Roberta Schulte, Hsiao H. Tsai, Swati Tyagi, Arkaitz Ibarra, Maxim N. Shokhirev, Ling Huang, Martin Hetzer, and Saket Navlakha. “Predicting Age from the Transcriptome of Human Dermal Fibroblasts.” Genome Biology. BioMed Central, 2018. https://doi.org/10.1186/s13059-018-1599-6.","ieee":"J. G. Fleischer et al., “Predicting age from the transcriptome of human dermal fibroblasts,” Genome Biology, vol. 19. BioMed Central, 2018.","mla":"Fleischer, Jason G., et al. “Predicting Age from the Transcriptome of Human Dermal Fibroblasts.” Genome Biology, vol. 19, 221, BioMed Central, 2018, doi:10.1186/s13059-018-1599-6.","apa":"Fleischer, J. G., Schulte, R., Tsai, H. H., Tyagi, S., Ibarra, A., Shokhirev, M. N., … Navlakha, S. (2018). Predicting age from the transcriptome of human dermal fibroblasts. Genome Biology. BioMed Central. https://doi.org/10.1186/s13059-018-1599-6","short":"J.G. Fleischer, R. Schulte, H.H. Tsai, S. Tyagi, A. Ibarra, M.N. Shokhirev, L. Huang, M. Hetzer, S. Navlakha, Genome Biology 19 (2018).","ista":"Fleischer JG, Schulte R, Tsai HH, Tyagi S, Ibarra A, Shokhirev MN, Huang L, Hetzer M, Navlakha S. 2018. Predicting age from the transcriptome of human dermal fibroblasts. Genome Biology. 19, 221."},"quality_controlled":"1","volume":19},{"publisher":"EDP Sciences","intvolume":" 619","extern":"1","month":"11","article_processing_charge":"No","citation":{"mla":"Matthee, Jorryt J., et al. “Confirmation of Double Peaked Lyα Emission at z = 6.593: Witnessing a Galaxy Directly Contributing to the Reionisation of the Universe.” Astronomy & Astrophysics, vol. 619, A136, EDP Sciences, 2018, doi:10.1051/0004-6361/201833528.","apa":"Matthee, J. J., Sobral, D., Gronke, M., Paulino-Afonso, A., Stefanon, M., & Röttgering, H. (2018). Confirmation of double peaked Lyα emission at z = 6.593: Witnessing a galaxy directly contributing to the reionisation of the universe. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/201833528","short":"J.J. Matthee, D. Sobral, M. Gronke, A. Paulino-Afonso, M. Stefanon, H. Röttgering, Astronomy & Astrophysics 619 (2018).","ista":"Matthee JJ, Sobral D, Gronke M, Paulino-Afonso A, Stefanon M, Röttgering H. 2018. Confirmation of double peaked Lyα emission at z = 6.593: Witnessing a galaxy directly contributing to the reionisation of the universe. Astronomy & Astrophysics. 619, A136.","ama":"Matthee JJ, Sobral D, Gronke M, Paulino-Afonso A, Stefanon M, Röttgering H. Confirmation of double peaked Lyα emission at z = 6.593: Witnessing a galaxy directly contributing to the reionisation of the universe. Astronomy & Astrophysics. 2018;619. doi:10.1051/0004-6361/201833528","chicago":"Matthee, Jorryt J, David Sobral, Max Gronke, Ana Paulino-Afonso, Mauro Stefanon, and Huub Röttgering. “Confirmation of Double Peaked Lyα Emission at z = 6.593: Witnessing a Galaxy Directly Contributing to the Reionisation of the Universe.” Astronomy & Astrophysics. EDP Sciences, 2018. https://doi.org/10.1051/0004-6361/201833528.","ieee":"J. J. Matthee, D. Sobral, M. Gronke, A. Paulino-Afonso, M. Stefanon, and H. Röttgering, “Confirmation of double peaked Lyα emission at z = 6.593: Witnessing a galaxy directly contributing to the reionisation of the universe,” Astronomy & Astrophysics, vol. 619. EDP Sciences, 2018."},"quality_controlled":"1","volume":619,"arxiv":1,"scopus_import":"1","_id":"11508","status":"public","date_updated":"2024-10-14T11:31:36Z","oa":1,"abstract":[{"lang":"eng","text":"Distant luminous Lyman-α emitters (LAEs) are excellent targets for spectroscopic observations of galaxies in the epoch of reionisation (EoR). We present deep high-resolution (R = 5000) VLT/X-shooter observations, along with an extensive collection of photometric data of COLA1, a proposed double peaked LAE at z = 6.6. We rule out the possibility that COLA1’s emission line is an [OII] doublet at z = 1.475 on the basis of i) the asymmetric red line-profile and flux ratio of the peaks (blue/red=0.31 ± 0.03) and ii) an unphysical [OII]/Hα ratio ([OII]/Hα > 22). We show that COLA1’s observed B-band flux is explained by a faint extended foreground LAE, for which we detect Lyα and [OIII] at z = 2.142. We thus conclude that COLA1 is a real double-peaked LAE at z = 6.593, the first discovered at z > 6. COLA1 is UV luminous (M1500 = −21.6 ± 0.3), has a high equivalent width (EW0,Lyα = 120−40+50 Å) and very compact Lyα emission (r50,Lyα = 0.33−0.04+0.07 kpc). Relatively weak inferred Hβ+[OIII] line-emission from Spitzer/IRAC indicates an extremely low metallicity of Z < 1/20 Z⊙ or reduced strength of nebular lines due to high escape of ionising photons. The small Lyα peak separation of 220 ± 20 km s−1 implies a low HI column density and an ionising photon escape fraction of ≈15 − 30%, providing the first direct evidence that such galaxies contribute actively to the reionisation of the Universe at z > 6. Based on simple estimates, we find that COLA1 could have provided just enough photons to reionise its own ≈0.3 pMpc (2.3 cMpc) bubble, allowing the blue Lyα line to be observed. However, we also discuss alternative scenarios explaining the detected double peaked nature of COLA1. Our results show that future high-resolution observations of statistical samples of double peaked LAEs at z > 5 are a promising probe of the occurrence of ionised regions around galaxies in the EoR."}],"external_id":{"arxiv":["1805.11621"]},"date_published":"2018-11-19T00:00:00Z","publication":"Astronomy & Astrophysics","day":"19","author":[{"id":"7439a258-f3c0-11ec-9501-9df22fe06720","first_name":"Jorryt J","last_name":"Matthee","full_name":"Matthee, Jorryt J","orcid":"0000-0003-2871-127X"},{"first_name":"David","full_name":"Sobral, David","last_name":"Sobral"},{"first_name":"Max","full_name":"Gronke, Max","last_name":"Gronke"},{"first_name":"Ana","full_name":"Paulino-Afonso, Ana","last_name":"Paulino-Afonso"},{"last_name":"Stefanon","full_name":"Stefanon, Mauro","first_name":"Mauro"},{"first_name":"Huub","full_name":"Röttgering, Huub","last_name":"Röttgering"}],"main_file_link":[{"url":"https://arxiv.org/abs/1805.11621","open_access":"1"}],"oa_version":"Published Version","language":[{"iso":"eng"}],"title":"Confirmation of double peaked Lyα emission at z = 6.593: Witnessing a galaxy directly contributing to the reionisation of the universe","type":"journal_article","article_type":"original","publication_status":"published","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"year":"2018","article_number":"A136","keyword":["Space and Planetary Science","Astronomy and Astrophysics","galaxies: high-redshift / galaxies: formation / dark ages / reionization / first stars / techniques: spectroscopic / intergalactic medium"],"doi":"10.1051/0004-6361/201833528","acknowledgement":"JM acknowledges the award of a Huygens PhD fellowship from Leiden University. MG acknowledges support from NASA grant NNX17AK58G. APA, PhD::SPACE fellow, acknowledges support from the FCT through the fellowship PD/BD/52706/2014. Based on observations made with ESO Telescopes at the La Silla Paranal Observatory under programme IDs 294.A-5018, 098.A-0819, 099.A-0254 and 0100.A-0213. We are grateful for the excellent data-sets from the COSMOS and UltraVISTA survey teams. This research was supported by the Munich Institute for Astro- and Particle Physics (MIAPP) of the DFG cluster of excellence “Origin and Structure of the Universe”. We thank the referee for their comments that improved the paper. We also thank Christoph Behrens, Len Cowie, Koki Kakiichi, Peter Laursen, Charlotte Mason, Eros Vanzella, Lewis Weinberger and Johannes Zabl for discussions. We have benefited from the public available programming language Python, including the numpy, matplotlib, scipy and astropy packages (Hunter 2007; Astropy Collaboration 2013), the astronomical imaging tools Swarp (Bertin 2010) and ds9 and the Topcat analysis tool (Taylor 2013).","date_created":"2022-07-06T11:14:23Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"oa":1,"date_updated":"2022-08-19T06:58:06Z","status":"public","_id":"11555","arxiv":1,"scopus_import":"1","volume":478,"quality_controlled":"1","citation":{"apa":"Carniani, S., Maiolino, R., Amorin, R., Pentericci, L., Pallottini, A., Ferrara, A., … Guaita, L. (2018). Kiloparsec-scale gaseous clumps and star formation at z = 5–7. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/sty1088","mla":"Carniani, S., et al. “Kiloparsec-Scale Gaseous Clumps and Star Formation at z = 5–7.” Monthly Notices of the Royal Astronomical Society, vol. 478, no. 1, Oxford University Press, 2018, pp. 1170–84, doi:10.1093/mnras/sty1088.","ista":"Carniani S, Maiolino R, Amorin R, Pentericci L, Pallottini A, Ferrara A, Willott CJ, Smit R, Matthee JJ, Sobral D, Santini P, Castellano M, De Barros S, Fontana A, Grazian A, Guaita L. 2018. Kiloparsec-scale gaseous clumps and star formation at z = 5–7. Monthly Notices of the Royal Astronomical Society. 478(1), 1170–1184.","short":"S. Carniani, R. Maiolino, R. Amorin, L. Pentericci, A. Pallottini, A. Ferrara, C.J. Willott, R. Smit, J.J. Matthee, D. Sobral, P. Santini, M. Castellano, S. De Barros, A. Fontana, A. Grazian, L. Guaita, Monthly Notices of the Royal Astronomical Society 478 (2018) 1170–1184.","ama":"Carniani S, Maiolino R, Amorin R, et al. Kiloparsec-scale gaseous clumps and star formation at z = 5–7. Monthly Notices of the Royal Astronomical Society. 2018;478(1):1170-1184. doi:10.1093/mnras/sty1088","chicago":"Carniani, S, R Maiolino, R Amorin, L Pentericci, A Pallottini, A Ferrara, C J Willott, et al. “Kiloparsec-Scale Gaseous Clumps and Star Formation at z = 5–7.” Monthly Notices of the Royal Astronomical Society. Oxford University Press, 2018. https://doi.org/10.1093/mnras/sty1088.","ieee":"S. Carniani et al., “Kiloparsec-scale gaseous clumps and star formation at z = 5–7,” Monthly Notices of the Royal Astronomical Society, vol. 478, no. 1. Oxford University Press, pp. 1170–1184, 2018."},"page":"1170-1184","article_processing_charge":"No","month":"07","extern":"1","intvolume":" 478","publisher":"Oxford University Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2022-07-11T08:05:42Z","doi":"10.1093/mnras/sty1088","acknowledgement":"This paper makes use of the following ALMA data:\r\nADS/JAO.ALMA#2012.1.00719.S, ADS/JAO.ALMA#2012.A.00040.S,\r\nADS/JAO.ALMA#2013.A.00433.S, ADS/JAO.ALMA#2011.0.00115.S,\r\nADS/JAO.ALMA#2012.1.00033.S, ADS/JAO.ALMA#2012.1.00523.S,\r\nADS/JAO.ALMA#2013.1.00815.S, ADS/JAO.ALMA#2015.1.00834.S.,\r\nADS/JAO.ALMA#2015.1.01105.S, AND ADS/JAO.ALMA#2016.1.01240.S\r\nwhich can be retrieved from the ALMA data archive:\r\nhttps://almascience.eso.org/ alma-data/archive. ALMA is a partnership of ESO (representing its member states), NSF (USA) and NINS (Japan), together with NRC (Canada) and NSC and ASIAA (Taiwan), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO, and NAOJ. We are grateful to G. Jones to for providing his [C II] flux maps. RM and SC acknowledge support by the Science and Technology Facilities Council (STFC). RM acknowledges ERC Advanced Grant 695671 ‘QUENCH’. AF acknowledges support from the ERC Advanced Grant INTERSTELLAR H2020/740120.","keyword":["Space and Planetary Science","Astronomy and Astrophysics","galaxies: evolution","galaxies: high-redshift","galaxies: ISM","galaxies: formation"],"year":"2018","publication_identifier":{"issn":["0035-8711"],"eissn":["1365-2966"]},"publication_status":"published","article_type":"original","title":"Kiloparsec-scale gaseous clumps and star formation at z = 5–7","type":"journal_article","language":[{"iso":"eng"}],"oa_version":"Preprint","issue":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1712.03985"}],"author":[{"first_name":"S","last_name":"Carniani","full_name":"Carniani, S"},{"first_name":"R","full_name":"Maiolino, R","last_name":"Maiolino"},{"first_name":"R","last_name":"Amorin","full_name":"Amorin, R"},{"last_name":"Pentericci","full_name":"Pentericci, L","first_name":"L"},{"full_name":"Pallottini, A","last_name":"Pallottini","first_name":"A"},{"last_name":"Ferrara","full_name":"Ferrara, A","first_name":"A"},{"first_name":"C J","last_name":"Willott","full_name":"Willott, C J"},{"full_name":"Smit, R","last_name":"Smit","first_name":"R"},{"full_name":"Matthee, Jorryt J","last_name":"Matthee","first_name":"Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","orcid":"0000-0003-2871-127X"},{"first_name":"D","last_name":"Sobral","full_name":"Sobral, D"},{"first_name":"P","last_name":"Santini","full_name":"Santini, P"},{"last_name":"Castellano","full_name":"Castellano, M","first_name":"M"},{"first_name":"S","last_name":"De Barros","full_name":"De Barros, S"},{"last_name":"Fontana","full_name":"Fontana, A","first_name":"A"},{"first_name":"A","full_name":"Grazian, A","last_name":"Grazian"},{"last_name":"Guaita","full_name":"Guaita, L","first_name":"L"}],"day":"01","publication":"Monthly Notices of the Royal Astronomical Society","date_published":"2018-07-01T00:00:00Z","external_id":{"arxiv":["1712.03985"]},"abstract":[{"text":"We investigate the morphology of the [C II] emission in a sample of ‘normal’ star-forming galaxies at 5 < z < 7.2 in relation to their UV (rest-frame) counterpart. We use new Atacama Large Millimetre/submillimetre Array (ALMA) observations of galaxies at z ∼ 6–7, as well as a careful re-analysis of archival ALMA data. In total 29 galaxies were analysed, 21 of which are detected in [C II]. For several of the latter the [C II] emission breaks into multiple components. Only a fraction of these [C II] components, if any, is associated with the primary UV systems, while the bulk of the [C II] emission is associated either with fainter UV components, or not associated with any UV counterpart at the current limits. By taking into account the presence of all these components, we find that the L[CII]–SFR (star formation rate) relation at early epochs is fully consistent with the local relation, but it has a dispersion of 0.48 ± 0.07 dex, which is about two times larger than observed locally. We also find that the deviation from the local L[CII]–SFR relation has a weak anticorrelation with the EW(Ly α). The morphological analysis also reveals that [C II] emission is generally much more extended than the UV emission. As a consequence, these primordial galaxies are characterized by a [C II] surface brightness generally much lower than expected from the local Σ[CII]−ΣSFR relation. These properties are likely a consequence of a combination of different effects, namely gas metallicity, [C II] emission from obscured star-forming regions, strong variations of the ionization parameter, and circumgalactic gas in accretion or ejected by these primeval galaxies.","lang":"eng"}]},{"date_created":"2022-07-12T10:41:08Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0035-8711"],"eissn":["1365-2966"]},"year":"2018","keyword":["Space and Planetary Science","Astronomy and Astrophysics","galaxies: evolution","galaxies: formation","galaxies: high-redshift","galaxies: luminosity function","mass function","galaxies: statistics"],"acknowledgement":"We thank the anonymous referee for their constructive comments that helped us improve the manuscript. DS acknowledges the hospitality of the IAC and a Severo Ochoa visiting grant. SS and JC acknowledge studentships from the Lancaster University. JM acknowledges a Huygens PhD fellowship from Leiden University. APA acknowledges financial support from the Science and Technology Foundation (FCT, Portugal) through research grants UID/FIS/04434/2013 and fellowship PD/BD/52706/2014. The authors thank Alyssa Drake, Kimihiko Nakajima, Yuichi Harikane, Max Gronke, Irene Shivaei, Helmut Dannerbauer, Huub Rottgering, ¨ Marius Eide, and Masami Ouchi for many engaging and stimulating discussions. We also thank Sara Perez, Alex Bennett, and Tom Rose for their involvement in the early stages of this project. Based on data products from observations made with European Southern Observatory (ESO) Telescopes at the La Silla Paranal Observatory under ESO programme IDs 294.A-5018, 097.A 0943,\r\n098.A-0819, 099.A-0254, and 179.A-2005 and on data products produced by TERAPIX and the Cambridge Astronomy Survey Unit on behalf of the UltraVISTA consortium. Based on observations using the WFC on the 2.5 m INT, as part of programmes 2013AN002, 2013BN008, 2014AC88, 2014AN002, 2014BN006, 2014BC118, and 2016AN001. The INT is operated on the island of La Palma by the Isaac Newton Group in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias. This work is based in part on data products produced at TERAPIX available at the Canadian Astronomy Data Centre as part of the Canada–France– Hawaii Telescope Legacy Survey (CFHTLS), a collaborative project of NRC and CNRS.\r\nWe are grateful to the CFHTLS, COSMOS-UltraVISTA, and COSMOS survey teams. We are also unmeasurably thankful to the pioneering and continuous work from previous Ly α surveys’ teams. Without these previous Ly α and the wider reach legacy surveys, this research would have been impossible. We also thank the VUDS team for making available spectroscopic redshifts from data obtained with VIMOS at the European Southern Observatory Very Large Telescope, Paranal, Chile, under Large Programme 185.A-0791. Finally, the authors acknowledge the unique value of the publicly available programming language PYTHON, including the NUMPY and SCIPY (Van Der Walt, Colbert & Varoquaux 2011; Jones et al. 2001), MATPLOTLIB (Hunter 2007), ASTROPY (Astropy Collaboration et al. 2013), and the TOPCAT analysis program (Taylor 2005). We publicly release a catalogue with all LAEs used in this paper (SC4K), so it can be freely explored by the community (see five example entries in Table A1).","doi":"10.1093/mnras/sty378","article_type":"original","publication_status":"published","language":[{"iso":"eng"}],"title":"Slicing COSMOS with SC4K: The evolution of typical Ly α emitters and the Ly α escape fraction from z ∼ 2 to 6","type":"journal_article","issue":"4","main_file_link":[{"url":"https://arxiv.org/abs/1712.04451","open_access":"1"}],"oa_version":"Preprint","day":"01","author":[{"first_name":"David","full_name":"Sobral, David","last_name":"Sobral"},{"first_name":"Sérgio","full_name":"Santos, Sérgio","last_name":"Santos"},{"id":"7439a258-f3c0-11ec-9501-9df22fe06720","first_name":"Jorryt J","last_name":"Matthee","full_name":"Matthee, Jorryt J","orcid":"0000-0003-2871-127X"},{"full_name":"Paulino-Afonso, Ana","last_name":"Paulino-Afonso","first_name":"Ana"},{"first_name":"Bruno","last_name":"Ribeiro","full_name":"Ribeiro, Bruno"},{"first_name":"João","last_name":"Calhau","full_name":"Calhau, João"},{"last_name":"Khostovan","full_name":"Khostovan, Ali A","first_name":"Ali A"}],"date_published":"2018-06-01T00:00:00Z","external_id":{"arxiv":["1712.04451"]},"publication":"Monthly Notices of the Royal Astronomical Society","abstract":[{"text":"We present and explore deep narrow- and medium-band data obtained with the Subaru and the Isaac Newton Telescopes in the ∼2 deg2 COSMOS field. We use these data as an extremely wide, low-resolution (R ∼ 20–80) Integral Field Unit survey to slice through the COSMOS field and obtain a large sample of ∼4000 Ly α emitters (LAEs) from z ∼ 2 to 6 in 16 redshift slices (SC4K). We present new Ly α luminosity functions (LFs) covering a comoving volume of ∼108 Mpc3. SC4K extensively complements ultradeep surveys, jointly covering over 4 dex in Ly α luminosity and revealing a global (2.5 < z < 6) synergy LF with α=−1.93+0.12−0.12, log10Φ∗Lyα=−3.45+0.22−0.29 Mpc−3, and log10L∗Lyα=42.93+0.15−0.11 erg s−1. The Schechter component of the Ly α LF reveals a factor ∼5 rise in L∗Lyα and a ∼7 × decline in Φ∗Lyα from z ∼ 2 to 6. The data reveal an extra power-law (or Schechter) component above LLy α ≈ 1043.3 erg s−1 at z ∼ 2.2–3.5 and we show that it is partially driven by X-ray and radio active galactic nucleus (AGN), as their Ly α LF resembles the excess. The power-law component vanishes and/or is below our detection limits above z > 3.5, likely linked with the evolution of the AGN population. The Ly α luminosity density rises by a factor ∼2 from z ∼ 2 to 3 but is then found to be roughly constant (1.1+0.2−0.2×1040 erg s−1 Mpc−3) to z ∼ 6, despite the ∼0.7 dex drop in ultraviolet (UV) luminosity density. The Ly α/UV luminosity density ratio rises from 4 ± 1 per cent to 30 ± 6 per cent from z ∼ 2.2 to 6. Our results imply a rise of a factor of ≈2 in the global ionization efficiency (ξion) and a factor ≈4 ± 1 in the Ly α escape fraction from z ∼ 2 to 6, hinting for evolution in both the typical burstiness/stellar populations and even more so in the typical interstellar medium conditions allowing Ly α photons to escape.","lang":"eng"}],"oa":1,"date_updated":"2022-08-19T07:04:45Z","_id":"11558","status":"public","scopus_import":"1","arxiv":1,"citation":{"ista":"Sobral D, Santos S, Matthee JJ, Paulino-Afonso A, Ribeiro B, Calhau J, Khostovan AA. 2018. Slicing COSMOS with SC4K: The evolution of typical Ly α emitters and the Ly α escape fraction from z ∼ 2 to 6. Monthly Notices of the Royal Astronomical Society. 476(4), 4725–4752.","short":"D. Sobral, S. Santos, J.J. Matthee, A. Paulino-Afonso, B. Ribeiro, J. Calhau, A.A. Khostovan, Monthly Notices of the Royal Astronomical Society 476 (2018) 4725–4752.","mla":"Sobral, David, et al. “Slicing COSMOS with SC4K: The Evolution of Typical Ly α Emitters and the Ly α Escape Fraction from z ∼ 2 to 6.” Monthly Notices of the Royal Astronomical Society, vol. 476, no. 4, Oxford University Press, 2018, pp. 4725–52, doi:10.1093/mnras/sty378.","apa":"Sobral, D., Santos, S., Matthee, J. J., Paulino-Afonso, A., Ribeiro, B., Calhau, J., & Khostovan, A. A. (2018). Slicing COSMOS with SC4K: The evolution of typical Ly α emitters and the Ly α escape fraction from z ∼ 2 to 6. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/sty378","ieee":"D. Sobral et al., “Slicing COSMOS with SC4K: The evolution of typical Ly α emitters and the Ly α escape fraction from z ∼ 2 to 6,” Monthly Notices of the Royal Astronomical Society, vol. 476, no. 4. Oxford University Press, pp. 4725–4752, 2018.","ama":"Sobral D, Santos S, Matthee JJ, et al. Slicing COSMOS with SC4K: The evolution of typical Ly α emitters and the Ly α escape fraction from z ∼ 2 to 6. Monthly Notices of the Royal Astronomical Society. 2018;476(4):4725-4752. doi:10.1093/mnras/sty378","chicago":"Sobral, David, Sérgio Santos, Jorryt J Matthee, Ana Paulino-Afonso, Bruno Ribeiro, João Calhau, and Ali A Khostovan. “Slicing COSMOS with SC4K: The Evolution of Typical Ly α Emitters and the Ly α Escape Fraction from z ∼ 2 to 6.” Monthly Notices of the Royal Astronomical Society. Oxford University Press, 2018. https://doi.org/10.1093/mnras/sty378."},"quality_controlled":"1","volume":476,"article_processing_charge":"No","page":"4725-4752","extern":"1","month":"06","publisher":"Oxford University Press","intvolume":" 476"},{"_id":"19494","status":"public","arxiv":1,"scopus_import":"1","oa":1,"date_updated":"2025-07-10T11:51:49Z","extern":"1","OA_place":"repository","month":"09","publisher":"Taylor & Francis","intvolume":" 125","citation":{"mla":"Chan, Stephanie. “Rational Right Triangles of a given Area.” The American Mathematical Monthly, vol. 125, no. 8, Taylor & Francis, 2018, pp. 689–703, doi:10.1080/00029890.2018.1495491.","apa":"Chan, S. (2018). Rational right triangles of a given area. The American Mathematical Monthly. Taylor & Francis. https://doi.org/10.1080/00029890.2018.1495491","short":"S. Chan, The American Mathematical Monthly 125 (2018) 689–703.","ista":"Chan S. 2018. Rational right triangles of a given area. The American Mathematical Monthly. 125(8), 689–703.","ama":"Chan S. Rational right triangles of a given area. The American Mathematical Monthly. 2018;125(8):689-703. doi:10.1080/00029890.2018.1495491","chicago":"Chan, Stephanie. “Rational Right Triangles of a given Area.” The American Mathematical Monthly. Taylor & Francis, 2018. https://doi.org/10.1080/00029890.2018.1495491.","ieee":"S. Chan, “Rational right triangles of a given area,” The American Mathematical Monthly, vol. 125, no. 8. Taylor & Francis, pp. 689–703, 2018."},"volume":125,"OA_type":"green","quality_controlled":"1","article_processing_charge":"No","page":"689-703","article_type":"original","publication_status":"published","language":[{"iso":"eng"}],"type":"journal_article","title":"Rational right triangles of a given area","date_created":"2025-04-05T10:51:16Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0002-9890"],"eissn":["1930-0972"]},"year":"2018","doi":"10.1080/00029890.2018.1495491","date_published":"2018-09-28T00:00:00Z","external_id":{"arxiv":["1706.05919"]},"publication":"The American Mathematical Monthly","abstract":[{"lang":"eng","text":"Starting from any given rational-sided, right triangle, for example, the (3,4,5)-triangle with area 6, we use Euclidean geometry to show that there are infinitely many other rational-sided, right triangles of the same area. We show further that the set of all such triangles of a given area is finitely generated under our geometric construction. Such areas are known as “congruent numbers” and have a rich history in which all the results in this article have been proved and far more. Yet, as far as we can tell, this seems to be the first exploration using this kind of geometric technique."}],"issue":"8","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1706.05919"}],"oa_version":"Preprint","day":"28","author":[{"last_name":"Chan","full_name":"Chan, Yik Tung","id":"c4c0afc8-9262-11ed-9231-d8b0bc743af1","first_name":"Yik Tung","orcid":"0000-0001-8467-4106"}]},{"scopus_import":"1","arxiv":1,"ddc":["530"],"status":"public","_id":"21533","date_updated":"2026-04-15T11:48:45Z","oa":1,"intvolume":" 5","publisher":"American Chemical Society ","OA_place":"repository","month":"08","extern":"1","page":"3513-3518","article_processing_charge":"No","quality_controlled":"1","volume":5,"OA_type":"green","citation":{"short":"A. Massuda, C. Roques-Carmes, Y. Yang, S.E. Kooi, Y. Yang, C. Murdia, K.K. Berggren, I. Kaminer, M. Soljačić, ACS Photonics 5 (2018) 3513–3518.","ista":"Massuda A, Roques-Carmes C, Yang Y, Kooi SE, Yang Y, Murdia C, Berggren KK, Kaminer I, Soljačić M. 2018. Smith–Purcell radiation from low-energy electrons. ACS Photonics. 5(9), 3513–3518.","mla":"Massuda, Aviram, et al. “Smith–Purcell Radiation from Low-Energy Electrons.” ACS Photonics, vol. 5, no. 9, American Chemical Society , 2018, pp. 3513–18, doi:10.1021/acsphotonics.8b00743.","apa":"Massuda, A., Roques-Carmes, C., Yang, Y., Kooi, S. E., Yang, Y., Murdia, C., … Soljačić, M. (2018). Smith–Purcell radiation from low-energy electrons. ACS Photonics. American Chemical Society . https://doi.org/10.1021/acsphotonics.8b00743","ieee":"A. Massuda et al., “Smith–Purcell radiation from low-energy electrons,” ACS Photonics, vol. 5, no. 9. American Chemical Society , pp. 3513–3518, 2018.","chicago":"Massuda, Aviram, Charles Roques-Carmes, Yujia Yang, Steven E. Kooi, Yi Yang, Chitraang Murdia, Karl K. Berggren, Ido Kaminer, and Marin Soljačić. “Smith–Purcell Radiation from Low-Energy Electrons.” ACS Photonics. American Chemical Society , 2018. https://doi.org/10.1021/acsphotonics.8b00743.","ama":"Massuda A, Roques-Carmes C, Yang Y, et al. Smith–Purcell radiation from low-energy electrons. ACS Photonics. 2018;5(9):3513-3518. doi:10.1021/acsphotonics.8b00743"},"type":"journal_article","title":"Smith–Purcell radiation from low-energy electrons","language":[{"iso":"eng"}],"publication_status":"published","article_type":"letter_note","keyword":["light−matter interactions","periodic structures","nanophotonics","free-electron light sources"],"doi":"10.1021/acsphotonics.8b00743","publication_identifier":{"eissn":["2330-4022"]},"year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2026-03-30T12:22:47Z","abstract":[{"lang":"eng","text":"Recent advances in the fabrication of nanostructures and nanoscale features in metasurfaces offer new prospects for generating visible light emission from low-energy electrons. Here we present the experimental observation of visible light emission from low-energy free electrons interacting with nanoscale periodic surfaces through the Smith–Purcell (SP) effect. We demonstrate SP light emission from nanoscale gratings with periodicity as small as 50 nm, enabling the observation of tunable visible radiation from low-energy electrons (1.5 to 6 keV), an order of magnitude lower in energy than previously reported. We study the emission wavelength and intensity dependence on the grating pitch and electron energy, showing agreement between experiment and theory. Our results open the way to the production of SP-based nanophotonics integrated devices. Built inside electron microscopes, SP sources could enable the development of novel electron–optical correlated spectroscopic techniques and facilitate the observation of new quantum effects in light sources."}],"publication":"ACS Photonics","external_id":{"arxiv":["1710.05358"]},"date_published":"2018-08-30T00:00:00Z","author":[{"last_name":"Massuda","full_name":"Massuda, Aviram","first_name":"Aviram"},{"full_name":"Roques-Carmes, Charles","last_name":"Roques-Carmes","first_name":"Charles","id":"e2e68fc9-6505-11ef-a541-eb4e72cc3e82"},{"last_name":"Yang","full_name":"Yang, Yujia","first_name":"Yujia"},{"first_name":"Steven E.","full_name":"Kooi, Steven E.","last_name":"Kooi"},{"full_name":"Yang, Yi","last_name":"Yang","first_name":"Yi"},{"first_name":"Chitraang","full_name":"Murdia, Chitraang","last_name":"Murdia"},{"first_name":"Karl K.","full_name":"Berggren, Karl K.","last_name":"Berggren"},{"full_name":"Kaminer, Ido","last_name":"Kaminer","first_name":"Ido"},{"first_name":"Marin","full_name":"Soljačić, Marin","last_name":"Soljačić"}],"day":"30","oa_version":"Preprint","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1710.05358","open_access":"1"}],"issue":"9"},{"publication_identifier":{"eissn":["1944-8007"],"issn":["0094-8276"]},"year":"2018","keyword":["General Earth and Planetary Sciences","Geophysics"],"doi":"10.1029/2018gl079678","date_created":"2023-02-20T08:13:18Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"title":"Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss","type":"journal_article","article_type":"letter_note","publication_status":"published","day":"18","author":[{"full_name":"Miles, Evan S.","last_name":"Miles","first_name":"Evan S."},{"last_name":"Willis","full_name":"Willis, Ian","first_name":"Ian"},{"last_name":"Buri","full_name":"Buri, Pascal","first_name":"Pascal"},{"first_name":"Jakob F.","last_name":"Steiner","full_name":"Steiner, Jakob F."},{"last_name":"Arnold","full_name":"Arnold, Neil S.","first_name":"Neil S."},{"first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2018GL079678"}],"issue":"19","oa_version":"Published Version","abstract":[{"text":"Glaciers in the high mountains of Asia provide an important water resource for millions of people. Many of these glaciers are partially covered by rocky debris, which protects the ice from solar radiation and warm air. However, studies have found that the surface of these debris-covered glaciers is actually lowering as fast as glaciers without debris. Water ponded on the surface of the glaciers may be partially responsible, as water can absorb atmospheric energy very efficiently. However, the overall effect of these ponds has not been thoroughly assessed yet. We study a valley in Nepal for which we have extensive weather measurements, and we use a numerical model to calculate the energy absorbed by ponds on the surface of the glaciers over 6 months. As we have not observed each individual pond thoroughly, we run the model 5,000 times with different setups. We find that ponds are extremely important for glacier melt and absorb energy 14 times as quickly as the debris-covered ice. Although the ponds account for 1% of the glacier area covered by rocks, and only 0.3% of the total glacier area, they absorb enough energy to account for one eighth of the whole valley's ice loss.","lang":"eng"}],"date_published":"2018-10-18T00:00:00Z","publication":"Geophysical Research Letters","date_updated":"2023-02-28T11:46:48Z","oa":1,"scopus_import":"1","_id":"12604","status":"public","article_processing_charge":"No","page":"10464-10473","citation":{"mla":"Miles, Evan S., et al. “Surface Pond Energy Absorption across Four Himalayan Glaciers Accounts for 1/8 of Total Catchment Ice Loss.” Geophysical Research Letters, vol. 45, no. 19, American Geophysical Union, 2018, pp. 10464–73, doi:10.1029/2018gl079678.","apa":"Miles, E. S., Willis, I., Buri, P., Steiner, J. F., Arnold, N. S., & Pellicciotti, F. (2018). Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. Geophysical Research Letters. American Geophysical Union. https://doi.org/10.1029/2018gl079678","ista":"Miles ES, Willis I, Buri P, Steiner JF, Arnold NS, Pellicciotti F. 2018. Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. Geophysical Research Letters. 45(19), 10464–10473.","short":"E.S. Miles, I. Willis, P. Buri, J.F. Steiner, N.S. Arnold, F. Pellicciotti, Geophysical Research Letters 45 (2018) 10464–10473.","chicago":"Miles, Evan S., Ian Willis, Pascal Buri, Jakob F. Steiner, Neil S. Arnold, and Francesca Pellicciotti. “Surface Pond Energy Absorption across Four Himalayan Glaciers Accounts for 1/8 of Total Catchment Ice Loss.” Geophysical Research Letters. American Geophysical Union, 2018. https://doi.org/10.1029/2018gl079678.","ama":"Miles ES, Willis I, Buri P, Steiner JF, Arnold NS, Pellicciotti F. Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. Geophysical Research Letters. 2018;45(19):10464-10473. doi:10.1029/2018gl079678","ieee":"E. S. Miles, I. Willis, P. Buri, J. F. Steiner, N. S. Arnold, and F. Pellicciotti, “Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss,” Geophysical Research Letters, vol. 45, no. 19. American Geophysical Union, pp. 10464–10473, 2018."},"quality_controlled":"1","volume":45,"publisher":"American Geophysical Union","intvolume":" 45","extern":"1","month":"10"},{"user_id":"2EBD1598-F248-11E8-B48F-1D18A9856A87","publist_id":"7926","date_created":"2018-12-11T11:44:46Z","doi":"10.1038/s41567-018-0160-6","date_updated":"2021-01-12T06:49:31Z","year":"2018","publication_status":"published","status":"public","_id":"127","title":"Clicks for doughnuts","type":"journal_article","language":[{"iso":"eng"}],"oa_version":"None","volume":14,"citation":{"ieee":"S. R. Waitukaitis, “Clicks for doughnuts,” Nature Physics, vol. 14, no. 8. Nature Publishing Group, pp. 777–778, 2018.","ama":"Waitukaitis SR. Clicks for doughnuts. Nature Physics. 2018;14(8):777-778. doi:10.1038/s41567-018-0160-6","chicago":"Waitukaitis, Scott R. “Clicks for Doughnuts.” Nature Physics. Nature Publishing Group, 2018. https://doi.org/10.1038/s41567-018-0160-6.","ista":"Waitukaitis SR. 2018. Clicks for doughnuts. Nature Physics. 14(8), 777–778.","short":"S.R. Waitukaitis, Nature Physics 14 (2018) 777–778.","mla":"Waitukaitis, Scott R. “Clicks for Doughnuts.” Nature Physics, vol. 14, no. 8, Nature Publishing Group, 2018, pp. 777–78, doi:10.1038/s41567-018-0160-6.","apa":"Waitukaitis, S. R. (2018). Clicks for doughnuts. Nature Physics. Nature Publishing Group. https://doi.org/10.1038/s41567-018-0160-6"},"issue":"8","page":"777 - 778","author":[{"orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","last_name":"Waitukaitis","full_name":"Waitukaitis, Scott R"}],"day":"28","month":"05","publication":"Nature Physics","extern":"1","date_published":"2018-05-28T00:00:00Z","intvolume":" 14","publisher":"Nature Publishing Group","abstract":[{"lang":"eng","text":"The ideas of topology are breaking ground in origami-based metamaterials. Experiments now show that certain shapes — doughnuts included — exhibit topological bistability, and can be made to click between different topologically stable states."}]},{"year":"2018","article_number":"641","publication_identifier":{"eissn":["2041-1723"]},"keyword":["General Physics and Astronomy","General Biochemistry","Genetics and Molecular Biology","General Chemistry","Multidisciplinary"],"doi":"10.1038/s41467-017-02715-6","date_created":"2023-08-01T09:39:32Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"type":"journal_article","title":"Reversible chromism of spiropyran in the cavity of a flexible coordination cage","article_type":"original","publication_status":"published","day":"13","author":[{"first_name":"Dipak","full_name":"Samanta, Dipak","last_name":"Samanta"},{"first_name":"Daria","full_name":"Galaktionova, Daria","last_name":"Galaktionova"},{"first_name":"Julius","last_name":"Gemen","full_name":"Gemen, Julius"},{"first_name":"Linda J. W.","full_name":"Shimon, Linda J. W.","last_name":"Shimon"},{"last_name":"Diskin-Posner","full_name":"Diskin-Posner, Yael","first_name":"Yael"},{"first_name":"Liat","last_name":"Avram","full_name":"Avram, Liat"},{"first_name":"Petr","last_name":"Král","full_name":"Král, Petr"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","last_name":"Klajn","full_name":"Klajn, Rafal"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/s41467-017-02715-6"}],"oa_version":"Published Version","pmid":1,"abstract":[{"lang":"eng","text":"Confining molecules to volumes only slightly larger than the molecules themselves can profoundly alter their properties. Molecular switches—entities that can be toggled between two or more forms upon exposure to an external stimulus—often require conformational freedom to isomerize. Therefore, placing these switches in confined spaces can render them non-operational. To preserve the switchability of these species under confinement, we work with a water-soluble coordination cage that is flexible enough to adapt its shape to the conformation of the encapsulated guest. We show that owing to its flexibility, the cage is not only capable of accommodating—and solubilizing in water—several light-responsive spiropyran-based molecular switches, but, more importantly, it also provides an environment suitable for the efficient, reversible photoisomerization of the bound guests. Our findings pave the way towards studying various molecular switching processes in confined environments."}],"external_id":{"pmid":["29440687"]},"date_published":"2018-02-13T00:00:00Z","publication":"Nature Communications","date_updated":"2024-10-14T12:14:34Z","oa":1,"related_material":{"link":[{"url":"https://doi.org/10.1038/s41467-018-03701-2","relation":"erratum"}]},"scopus_import":"1","_id":"13374","status":"public","article_processing_charge":"No","citation":{"ista":"Samanta D, Galaktionova D, Gemen J, Shimon LJW, Diskin-Posner Y, Avram L, Král P, Klajn R. 2018. Reversible chromism of spiropyran in the cavity of a flexible coordination cage. Nature Communications. 9, 641.","short":"D. Samanta, D. Galaktionova, J. Gemen, L.J.W. Shimon, Y. Diskin-Posner, L. Avram, P. Král, R. Klajn, Nature Communications 9 (2018).","apa":"Samanta, D., Galaktionova, D., Gemen, J., Shimon, L. J. W., Diskin-Posner, Y., Avram, L., … Klajn, R. (2018). Reversible chromism of spiropyran in the cavity of a flexible coordination cage. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-017-02715-6","mla":"Samanta, Dipak, et al. “Reversible Chromism of Spiropyran in the Cavity of a Flexible Coordination Cage.” Nature Communications, vol. 9, 641, Springer Nature, 2018, doi:10.1038/s41467-017-02715-6.","ieee":"D. Samanta et al., “Reversible chromism of spiropyran in the cavity of a flexible coordination cage,” Nature Communications, vol. 9. Springer Nature, 2018.","ama":"Samanta D, Galaktionova D, Gemen J, et al. Reversible chromism of spiropyran in the cavity of a flexible coordination cage. Nature Communications. 2018;9. doi:10.1038/s41467-017-02715-6","chicago":"Samanta, Dipak, Daria Galaktionova, Julius Gemen, Linda J. W. Shimon, Yael Diskin-Posner, Liat Avram, Petr Král, and Rafal Klajn. “Reversible Chromism of Spiropyran in the Cavity of a Flexible Coordination Cage.” Nature Communications. Springer Nature, 2018. https://doi.org/10.1038/s41467-017-02715-6."},"quality_controlled":"1","volume":9,"publisher":"Springer Nature","intvolume":" 9","extern":"1","month":"02"},{"scopus_import":"1","arxiv":1,"status":"public","_id":"13475","date_updated":"2024-10-14T12:22:18Z","oa":1,"intvolume":" 615","publisher":"EDP Sciences","month":"07","extern":"1","article_processing_charge":"No","quality_controlled":"1","volume":615,"citation":{"mla":"Götberg, Ylva Louise Linsdotter, et al. “Spectral Models for Binary Products: Unifying Subdwarfs and Wolf-Rayet Stars as a Sequence of Stripped-Envelope Stars.” Astronomy & Astrophysics, vol. 615, A78, EDP Sciences, 2018, doi:10.1051/0004-6361/201732274.","apa":"Götberg, Y. L. L., de Mink, S. E., Groh, J. H., Kupfer, T., Crowther, P. A., Zapartas, E., & Renzo, M. (2018). Spectral models for binary products: Unifying subdwarfs and Wolf-Rayet stars as a sequence of stripped-envelope stars. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/201732274","ista":"Götberg YLL, de Mink SE, Groh JH, Kupfer T, Crowther PA, Zapartas E, Renzo M. 2018. Spectral models for binary products: Unifying subdwarfs and Wolf-Rayet stars as a sequence of stripped-envelope stars. Astronomy & Astrophysics. 615, A78.","short":"Y.L.L. Götberg, S.E. de Mink, J.H. Groh, T. Kupfer, P.A. Crowther, E. Zapartas, M. Renzo, Astronomy & Astrophysics 615 (2018).","chicago":"Götberg, Ylva Louise Linsdotter, S. E. de Mink, J. H. Groh, T. Kupfer, P. A. Crowther, E. Zapartas, and M. Renzo. “Spectral Models for Binary Products: Unifying Subdwarfs and Wolf-Rayet Stars as a Sequence of Stripped-Envelope Stars.” Astronomy & Astrophysics. EDP Sciences, 2018. https://doi.org/10.1051/0004-6361/201732274.","ama":"Götberg YLL, de Mink SE, Groh JH, et al. Spectral models for binary products: Unifying subdwarfs and Wolf-Rayet stars as a sequence of stripped-envelope stars. Astronomy & Astrophysics. 2018;615. doi:10.1051/0004-6361/201732274","ieee":"Y. L. L. Götberg et al., “Spectral models for binary products: Unifying subdwarfs and Wolf-Rayet stars as a sequence of stripped-envelope stars,” Astronomy & Astrophysics, vol. 615. EDP Sciences, 2018."},"type":"journal_article","title":"Spectral models for binary products: Unifying subdwarfs and Wolf-Rayet stars as a sequence of stripped-envelope stars","language":[{"iso":"eng"}],"publication_status":"published","article_type":"original","doi":"10.1051/0004-6361/201732274","keyword":["Space and Planetary Science","Astronomy and Astrophysics"],"year":"2018","article_number":"A78","publication_identifier":{"eissn":["1432-0746"],"issn":["0004-6361"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2023-08-03T10:15:00Z","abstract":[{"text":"Stars stripped of their hydrogen-rich envelope through interaction with a binary companion are generally not considered when accounting for ionizing radiation from stellar populations, despite the expectation that stripped stars emit hard ionizing radiation, form frequently, and live 10–100 times longer than single massive stars. We compute the first grid of evolutionary and spectral models specially made for stars stripped in binaries for a range of progenitor masses (2–20 M⊙) and metallicities ranging from solar to values representative for pop II stars. For stripped stars with masses in the range 0.3–7 M⊙, we find consistently high effective temperatures (20 000–100 000 K, increasing with mass), small radii (0.2–1 R⊙), and high bolometric luminosities, comparable to that of their progenitor before stripping. The spectra show a continuous sequence that naturally bridges subdwarf-type stars at the low-mass end and Wolf-Rayet-like spectra at the high-mass end. For intermediate masses we find hybrid spectral classes showing a mixture of absorption and emission lines. These appear for stars with mass-loss rates of 10−8−10−6 M⊙ yr−1, which have semi-transparent atmospheres. At low metallicity, substantial hydrogen-rich layers are left at the surface and we predict spectra that resemble O-type stars instead. We obtain spectra undistinguishable from subdwarfs for stripped stars with masses up to 1.7 M⊙, which questions whether the widely adopted canonical value of 0.47 M⊙ is uniformly valid. Only a handful of stripped stars of intermediate mass have currently been identified observationally. Increasing this sample will provide necessary tests for the physics of interaction, internal mixing, and stellar winds. We use our model spectra to investigate the feasibility to detect stripped stars next to an optically bright companion and recommend systematic searches for their UV excess and possible emission lines, most notably HeII λ4686 in the optical and HeII λ1640 in the UV. Our models are publicly available for further investigations or inclusion in spectral synthesis simulations.","lang":"eng"}],"publication":"Astronomy & Astrophysics","external_id":{"arxiv":["1802.03018"]},"date_published":"2018-07-17T00:00:00Z","author":[{"full_name":"Götberg, Ylva Louise Linsdotter","last_name":"Götberg","first_name":"Ylva Louise Linsdotter","id":"d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d","orcid":"0000-0002-6960-6911"},{"first_name":"S. E.","full_name":"de Mink, S. E.","last_name":"de Mink"},{"first_name":"J. H.","last_name":"Groh","full_name":"Groh, J. H."},{"first_name":"T.","full_name":"Kupfer, T.","last_name":"Kupfer"},{"full_name":"Crowther, P. A.","last_name":"Crowther","first_name":"P. A."},{"first_name":"E.","last_name":"Zapartas","full_name":"Zapartas, E."},{"first_name":"M.","full_name":"Renzo, M.","last_name":"Renzo"}],"day":"17","oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1051/0004-6361/201732274"}]},{"publication_status":"published","article_type":"original","title":"Chiral discrimination through bielliptical high-harmonic spectroscopy","type":"journal_article","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2023-08-10T06:34:48Z","doi":"10.1103/physrevx.8.031060","keyword":["General Physics and Astronomy"],"article_number":"031060","year":"2018","publication_identifier":{"eissn":["2160-3308"]},"publication":"Physical Review X","date_published":"2018-07-01T00:00:00Z","abstract":[{"lang":"eng","text":"Molecular chirality plays an essential role in most biochemical processes. The observation and quantification of chirality-sensitive signals, however, remains extremely challenging, especially on ultrafast timescales and in dilute media. Here, we describe the experimental realization of an all-optical and ultrafast scheme for detecting chiral dynamics in molecules. This technique is based on high-harmonic generation by a combination of two-color counterrotating femtosecond laser pulses with polarization states tunable from linear to circular. We demonstrate two different implementations of chiral-sensitive high-harmonic spectroscopy on an ensemble of randomly oriented methyloxirane molecules in the gas phase. Using two elliptically polarized fields, we observe that the ellipticities maximizing the harmonic signal reach up to \r\n4.4\r\n±\r\n0.2\r\n%\r\n (at 17.6 eV). Using two circularly polarized fields, we observe circular dichroisms ranging up to \r\n13\r\n±\r\n6\r\n%\r\n (28.3–33.1 eV). Our theoretical analysis confirms that the observed chiral response originates from subfemtosecond electron dynamics driven by the magnetic component of the driving laser field. This assignment is supported by the experimental observation of a strong intensity dependence of the chiral effects and its agreement with theory. We moreover report and explain a pronounced variation of the signal strength and dichroism with the driving-field ellipticities and harmonic orders. Finally, we demonstrate the sensitivity of the experimental observables to the shape of the electron hole. This technique for chiral discrimination will yield femtosecond temporal resolution when integrated in a pump-probe scheme and subfemtosecond resolution on chiral charge migration in a self-probing scheme."}],"oa_version":"Published Version","issue":"3","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1103/PhysRevX.8.031060"}],"author":[{"last_name":"Baykusheva","full_name":"Baykusheva, Denitsa Rangelova","id":"71b4d059-2a03-11ee-914d-dfa3beed6530","first_name":"Denitsa Rangelova"},{"full_name":"Wörner, Hans Jakob","last_name":"Wörner","first_name":"Hans Jakob"}],"day":"01","status":"public","_id":"14003","scopus_import":"1","oa":1,"date_updated":"2023-08-22T07:42:07Z","month":"07","extern":"1","intvolume":" 8","publisher":"American Physical Society","quality_controlled":"1","volume":8,"citation":{"ama":"Baykusheva DR, Wörner HJ. Chiral discrimination through bielliptical high-harmonic spectroscopy. Physical Review X. 2018;8(3). doi:10.1103/physrevx.8.031060","chicago":"Baykusheva, Denitsa Rangelova, and Hans Jakob Wörner. “Chiral Discrimination through Bielliptical High-Harmonic Spectroscopy.” Physical Review X. American Physical Society, 2018. https://doi.org/10.1103/physrevx.8.031060.","ieee":"D. R. Baykusheva and H. J. Wörner, “Chiral discrimination through bielliptical high-harmonic spectroscopy,” Physical Review X, vol. 8, no. 3. American Physical Society, 2018.","apa":"Baykusheva, D. R., & Wörner, H. J. (2018). Chiral discrimination through bielliptical high-harmonic spectroscopy. Physical Review X. American Physical Society. https://doi.org/10.1103/physrevx.8.031060","mla":"Baykusheva, Denitsa Rangelova, and Hans Jakob Wörner. “Chiral Discrimination through Bielliptical High-Harmonic Spectroscopy.” Physical Review X, vol. 8, no. 3, 031060, American Physical Society, 2018, doi:10.1103/physrevx.8.031060.","ista":"Baykusheva DR, Wörner HJ. 2018. Chiral discrimination through bielliptical high-harmonic spectroscopy. Physical Review X. 8(3), 031060.","short":"D.R. Baykusheva, H.J. Wörner, Physical Review X 8 (2018)."},"article_processing_charge":"No"},{"month":"07","date_published":"2018-07-09T00:00:00Z","external_id":{"isi":["000545262800041"]},"abstract":[{"text":"The task of a monitor is to watch, at run-time, the execution of a reactive system, and signal the occurrence of a safety violation in the observed sequence of events. While finite-state monitors have been studied extensively, in practice, monitoring software also makes use of unbounded memory. We define a model of automata equipped with integer-valued registers which can execute only a bounded number of instructions between consecutive events, and thus can form the theoretical basis for the study of infinite-state monitors. We classify these register monitors according to the number k of available registers, and the type of register instructions. In stark contrast to the theory of computability for register machines, we prove that for every k 1, monitors with k + 1 counters (with instruction set 〈+1, =〉) are strictly more expressive than monitors with k counters. We also show that adder monitors (with instruction set 〈1, +, =〉) are strictly more expressive than counter monitors, but are complete for monitoring all computable safety -languages for k = 6. Real-time monitors are further required to signal the occurrence of a safety violation as soon as it occurs. The expressiveness hierarchy for counter monitors carries over to real-time monitors. We then show that 2 adders cannot simulate 3 counters in real-time. Finally, we show that real-time adder monitors with inequalities are as expressive as real-time Turing machines.","lang":"eng"}],"publisher":"IEEE","volume":"Part F138033","oa_version":"None","quality_controlled":"1","citation":{"ieee":"T. Ferrere, T. A. Henzinger, and E. Saraç, “A theory of register monitors,” presented at the LICS: Logic in Computer Science, Oxford, UK, 2018, vol. Part F138033, pp. 394–403.","chicago":"Ferrere, Thomas, Thomas A Henzinger, and Ege Saraç. “A Theory of Register Monitors,” Part F138033:394–403. IEEE, 2018. https://doi.org/10.1145/3209108.3209194.","ama":"Ferrere T, Henzinger TA, Saraç E. A theory of register monitors. In: Vol Part F138033. IEEE; 2018:394-403. doi:10.1145/3209108.3209194","ista":"Ferrere T, Henzinger TA, Saraç E. 2018. A theory of register monitors. LICS: Logic in Computer Science, ACM/IEEE Symposium on Logic in Computer Science, vol. Part F138033, 394–403.","short":"T. Ferrere, T.A. Henzinger, E. Saraç, in:, IEEE, 2018, pp. 394–403.","mla":"Ferrere, Thomas, et al. A Theory of Register Monitors. Vol. Part F138033, IEEE, 2018, pp. 394–403, doi:10.1145/3209108.3209194.","apa":"Ferrere, T., Henzinger, T. A., & Saraç, E. (2018). A theory of register monitors (Vol. Part F138033, pp. 394–403). Presented at the LICS: Logic in Computer Science, Oxford, UK: IEEE. https://doi.org/10.1145/3209108.3209194"},"author":[{"first_name":"Thomas","id":"40960E6E-F248-11E8-B48F-1D18A9856A87","full_name":"Ferrere, Thomas","last_name":"Ferrere","orcid":"0000-0001-5199-3143"},{"last_name":"Henzinger","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","orcid":"0000−0002−2985−7724"},{"first_name":"Ege","last_name":"Saraç","full_name":"Saraç, Ege"}],"page":"394 - 403","day":"09","article_processing_charge":"No","status":"public","publication_status":"published","_id":"144","type":"conference","scopus_import":"1","title":"A theory of register monitors","isi":1,"language":[{"iso":"eng"}],"department":[{"_id":"ToHe"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"7779","conference":{"location":"Oxford, UK","name":"LICS: Logic in Computer Science","start_date":"2018-07-09","end_date":"2018-07-12"},"alternative_title":["ACM/IEEE Symposium on Logic in Computer Science"],"date_created":"2018-12-11T11:44:52Z","date_updated":"2023-09-08T11:49:13Z","doi":"10.1145/3209108.3209194","year":"2018"},{"abstract":[{"lang":"eng","text":"We study low-density axisymmetric accretion flows onto black holes (BHs) with two-dimensional hydrodynamical simulations, adopting the α-viscosity prescription. When the gas angular momentum is low enough to form a rotationally supported disk within the Bondi radius (RB), we find a global steady accretion solution. The solution consists of a rotational equilibrium distribution at r∼RB, where the density follows ρ∝(1+RB/r)^3/2, surrounding a geometrically thick and optically thin accretion disk at the centrifugal radius, where thermal energy generated by viscosity is transported via strong convection. Physical properties of the inner solution agree with those expected in convection-dominated accretion flows (CDAF; ρ∝r^−1/2). In the inner CDAF solution, the gas inflow rate decreases towards the center due to convection (M˙∝r), and the net accretion rate (including both inflows and outflows) is strongly suppressed by several orders of magnitude from the Bondi accretion rate M˙B The net accretion rate depends on the viscous strength, following M˙/M˙B∝(α/0.01)^0.6. This solution holds for low accretion rates of M˙B/M˙Edd<10^−3 having minimal radiation cooling, where M˙Edd is the Eddington rate. In a hot plasma at the bottom (r<10^−3 RB), thermal conduction would dominate the convective energy flux. Since suppression of the accretion by convection ceases, the final BH feeding rate is found to be M˙/M˙B∼10^−3−10^−2. This rate is as low as M˙/M˙Edd∼10^−7−10^−6 inferred for SgrA∗ and the nuclear BHs in M31 and M87, and can explain the low luminosities in these sources, without invoking any feedback mechanism."}],"publication":"Monthly Notices of the Royal Astronomical Society","date_published":"2018-02-01T00:00:00Z","author":[{"full_name":"Inayoshi, Kohei","last_name":"Inayoshi","first_name":"Kohei"},{"full_name":"Ostriker, Jeremiah P","last_name":"Ostriker","first_name":"Jeremiah P"},{"id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","first_name":"Zoltán","last_name":"Haiman","full_name":"Haiman, Zoltán"},{"full_name":"Kuiper, Rolf","last_name":"Kuiper","first_name":"Rolf"}],"day":"01","oa_version":"Published Version","issue":"1","main_file_link":[{"url":"https://doi.org/10.1093/mnras/sty276","open_access":"1"}],"title":"Low-density, radiatively inefficient rotating-accretion flow on to a black hole","type":"journal_article","language":[{"iso":"eng"}],"publication_status":"published","article_type":"original","doi":"10.1093/mnras/sty276","year":"2018","publication_identifier":{"issn":["0035-8711","1365-2966"]},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-09-06T08:05:18Z","intvolume":" 476","publisher":"Oxford University Press","month":"02","extern":"1","page":"1412-1426","article_processing_charge":"No","volume":476,"quality_controlled":"1","citation":{"short":"K. Inayoshi, J.P. Ostriker, Z. Haiman, R. Kuiper, Monthly Notices of the Royal Astronomical Society 476 (2018) 1412–1426.","ista":"Inayoshi K, Ostriker JP, Haiman Z, Kuiper R. 2018. Low-density, radiatively inefficient rotating-accretion flow on to a black hole. Monthly Notices of the Royal Astronomical Society. 476(1), 1412–1426.","apa":"Inayoshi, K., Ostriker, J. P., Haiman, Z., & Kuiper, R. (2018). Low-density, radiatively inefficient rotating-accretion flow on to a black hole. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/sty276","mla":"Inayoshi, Kohei, et al. “Low-Density, Radiatively Inefficient Rotating-Accretion Flow on to a Black Hole.” Monthly Notices of the Royal Astronomical Society, vol. 476, no. 1, Oxford University Press, 2018, pp. 1412–26, doi:10.1093/mnras/sty276.","ieee":"K. Inayoshi, J. P. Ostriker, Z. Haiman, and R. Kuiper, “Low-density, radiatively inefficient rotating-accretion flow on to a black hole,” Monthly Notices of the Royal Astronomical Society, vol. 476, no. 1. Oxford University Press, pp. 1412–1426, 2018.","chicago":"Inayoshi, Kohei, Jeremiah P Ostriker, Zoltán Haiman, and Rolf Kuiper. “Low-Density, Radiatively Inefficient Rotating-Accretion Flow on to a Black Hole.” Monthly Notices of the Royal Astronomical Society. Oxford University Press, 2018. https://doi.org/10.1093/mnras/sty276.","ama":"Inayoshi K, Ostriker JP, Haiman Z, Kuiper R. Low-density, radiatively inefficient rotating-accretion flow on to a black hole. Monthly Notices of the Royal Astronomical Society. 2018;476(1):1412-1426. doi:10.1093/mnras/sty276"},"scopus_import":"1","status":"public","_id":"17679","date_updated":"2024-09-25T08:57:35Z","oa":1},{"publication":"Monthly Notices of the Royal Astronomical Society","date_published":"2018-06-30T00:00:00Z","abstract":[{"lang":"eng","text":"We propose the formation of massive pristine dark-matter (DM) halos with masses of ∼10^8 M⊙, due to the dynamical effects of frequent mergers in rare regions of the Universe with high baryonic streaming velocity relative to DM. Since the streaming motion prevents gas collapse into DM halos and delays prior star formation episodes, the gas remains metal-free until the halo virial temperatures ≳2×10^4 K. The minimum cooling mass of DM halos is boosted by a factor of ∼10−30 because frequent major mergers of halos further inhibit gas collapse. We use Monte Carlo merger trees to simulate the DM assembly history under a streaming velocity of twice the root-mean-square value, and estimate the number density of massive DM halos containing pristine gas as ≃10^−4 cMpc^−3. When the gas infall begins, efficient Lyα cooling drives cold streams penetrating inside the halo and feeding a central galactic disk. When one stream collides with the disk, strong shock forms a dense and hot gas cloud, where the gas never forms H2 molecules due to effective collisional dissociation. As a result, a massive gas cloud forms by gravitational instability and collapses directly into a massive black hole (BH) with M∙∼10^5 M⊙. Almost simultaneously, a galaxy with M⋆,tot∼10^6 M⊙ composed of Population III stars forms in the nuclear region. If the typical stellar mass is as high as ∼100 M⊙, the galaxy could be detected with the James Webb Space Telescope even at z≳15. These massive seed BHs would be fed by continuous gas accretion from the host galaxy, and grow to be bright quasars observed at z≳6."}],"oa_version":"Published Version","issue":"3","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/mnras/sty1720"}],"author":[{"full_name":"Inayoshi, Kohei","last_name":"Inayoshi","first_name":"Kohei"},{"full_name":"Li, Miao","last_name":"Li","first_name":"Miao"},{"full_name":"Haiman, Zoltán","last_name":"Haiman","first_name":"Zoltán","id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36"}],"day":"30","publication_status":"published","article_type":"original","title":"Massive black hole and Population III galaxy formation in overmassive dark-matter haloes with violent merger histories","type":"journal_article","language":[{"iso":"eng"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-09-06T08:22:23Z","doi":"10.1093/mnras/sty1720","year":"2018","publication_identifier":{"issn":["0035-8711","1365-2966"]},"month":"06","extern":"1","intvolume":" 479","publisher":"Oxford University Press","quality_controlled":"1","volume":479,"citation":{"apa":"Inayoshi, K., Li, M., & Haiman, Z. (2018). Massive black hole and Population III galaxy formation in overmassive dark-matter haloes with violent merger histories. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/sty1720","mla":"Inayoshi, Kohei, et al. “Massive Black Hole and Population III Galaxy Formation in Overmassive Dark-Matter Haloes with Violent Merger Histories.” Monthly Notices of the Royal Astronomical Society, vol. 479, no. 3, Oxford University Press, 2018, pp. 4017–27, doi:10.1093/mnras/sty1720.","ista":"Inayoshi K, Li M, Haiman Z. 2018. Massive black hole and Population III galaxy formation in overmassive dark-matter haloes with violent merger histories. Monthly Notices of the Royal Astronomical Society. 479(3), 4017–4027.","short":"K. Inayoshi, M. Li, Z. Haiman, Monthly Notices of the Royal Astronomical Society 479 (2018) 4017–4027.","chicago":"Inayoshi, Kohei, Miao Li, and Zoltán Haiman. “Massive Black Hole and Population III Galaxy Formation in Overmassive Dark-Matter Haloes with Violent Merger Histories.” Monthly Notices of the Royal Astronomical Society. Oxford University Press, 2018. https://doi.org/10.1093/mnras/sty1720.","ama":"Inayoshi K, Li M, Haiman Z. Massive black hole and Population III galaxy formation in overmassive dark-matter haloes with violent merger histories. Monthly Notices of the Royal Astronomical Society. 2018;479(3):4017-4027. doi:10.1093/mnras/sty1720","ieee":"K. Inayoshi, M. Li, and Z. Haiman, “Massive black hole and Population III galaxy formation in overmassive dark-matter haloes with violent merger histories,” Monthly Notices of the Royal Astronomical Society, vol. 479, no. 3. Oxford University Press, pp. 4017–4027, 2018."},"page":"4017-4027","article_processing_charge":"No","status":"public","_id":"17687","scopus_import":"1","oa":1,"date_updated":"2024-09-25T09:46:30Z"}]