--- DOAJ_listed: '1' OA_place: publisher OA_type: gold _id: '8402' abstract: - lang: eng text: "Background: The mitochondrial pyruvate carrier (MPC) plays a central role in energy metabolism by transporting pyruvate across the inner mitochondrial membrane. Its heterodimeric composition and homology to SWEET and semiSWEET transporters set the MPC apart from the canonical mitochondrial carrier family (named MCF or SLC25). The import of the canonical carriers is mediated by the carrier translocase of the inner membrane (TIM22) pathway and is dependent on their structure, which features an even number of transmembrane segments and both termini in the intermembrane space. The import pathway of MPC proteins has not been elucidated. The odd number of transmembrane segments and positioning of the N-terminus in the matrix argues against an import via the TIM22 carrier pathway but favors an import via the flexible presequence pathway.\r\nResults: Here, we systematically analyzed the import pathways of Mpc2 and Mpc3 and report that, contrary to an expected import via the flexible presequence pathway, yeast MPC proteins with an odd number of transmembrane segments and matrix-exposed N-terminus are imported by the carrier pathway, using the receptor Tom70, small TIM chaperones, and the TIM22 complex. The TIM9·10 complex chaperones MPC proteins through the mitochondrial intermembrane space using conserved hydrophobic motifs that are also required for the interaction with canonical carrier proteins.\r\nConclusions: The carrier pathway can import paired and non-paired transmembrane helices and translocate N-termini to either side of the mitochondrial inner membrane, revealing an unexpected versatility of the mitochondrial import pathway for non-cleavable inner membrane proteins." article_number: '2' article_processing_charge: No article_type: original author: - first_name: Heike full_name: Rampelt, Heike last_name: Rampelt - first_name: Iva full_name: Sucec, Iva last_name: Sucec - first_name: Beate full_name: Bersch, Beate last_name: Bersch - first_name: Patrick full_name: Horten, Patrick last_name: Horten - first_name: Inge full_name: Perschil, Inge last_name: Perschil - first_name: Jean-Claude full_name: Martinou, Jean-Claude last_name: Martinou - first_name: Martin full_name: van der Laan, Martin last_name: van der Laan - first_name: Nils full_name: Wiedemann, Nils last_name: Wiedemann - first_name: Paul full_name: Schanda, Paul id: 7B541462-FAF6-11E9-A490-E8DFE5697425 last_name: Schanda orcid: 0000-0002-9350-7606 - first_name: Nikolaus full_name: Pfanner, Nikolaus last_name: Pfanner citation: ama: Rampelt H, Sucec I, Bersch B, et al. The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments. BMC Biology. 2020;18. doi:10.1186/s12915-019-0733-6 apa: Rampelt, H., Sucec, I., Bersch, B., Horten, P., Perschil, I., Martinou, J.-C., … Pfanner, N. (2020). The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments. BMC Biology. Springer Nature. https://doi.org/10.1186/s12915-019-0733-6 chicago: Rampelt, Heike, Iva Sucec, Beate Bersch, Patrick Horten, Inge Perschil, Jean-Claude Martinou, Martin van der Laan, Nils Wiedemann, Paul Schanda, and Nikolaus Pfanner. “The Mitochondrial Carrier Pathway Transports Non-Canonical Substrates with an Odd Number of Transmembrane Segments.” BMC Biology. Springer Nature, 2020. https://doi.org/10.1186/s12915-019-0733-6. ieee: H. Rampelt et al., “The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments,” BMC Biology, vol. 18. Springer Nature, 2020. ista: Rampelt H, Sucec I, Bersch B, Horten P, Perschil I, Martinou J-C, van der Laan M, Wiedemann N, Schanda P, Pfanner N. 2020. The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments. BMC Biology. 18, 2. mla: Rampelt, Heike, et al. “The Mitochondrial Carrier Pathway Transports Non-Canonical Substrates with an Odd Number of Transmembrane Segments.” BMC Biology, vol. 18, 2, Springer Nature, 2020, doi:10.1186/s12915-019-0733-6. short: H. Rampelt, I. Sucec, B. Bersch, P. Horten, I. Perschil, J.-C. Martinou, M. van der Laan, N. Wiedemann, P. Schanda, N. Pfanner, BMC Biology 18 (2020). date_created: 2020-09-17T10:26:53Z date_published: 2020-01-06T00:00:00Z date_updated: 2024-10-15T13:23:11Z day: '06' doi: 10.1186/s12915-019-0733-6 extern: '1' external_id: pmid: - '31907035' intvolume: ' 18' keyword: - Biotechnology - Plant Science - General Biochemistry - Genetics and Molecular Biology - Developmental Biology - Cell Biology - Physiology - Ecology - Evolution - Behavior and Systematics - Structural Biology - General Agricultural and Biological Sciences language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1186/s12915-019-0733-6 month: '01' oa: 1 oa_version: Published Version pmid: 1 publication: BMC Biology publication_identifier: issn: - 1741-7007 publication_status: published publisher: Springer Nature quality_controlled: '1' status: public title: The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments type: journal_article user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0 volume: 18 year: '2020' ... --- _id: '8568' abstract: - lang: eng text: Aqueous iodine based electrochemical energy storage is considered a potential candidate to improve sustainability and performance of current battery and supercapacitor technology. It harnesses the redox activity of iodide, iodine, and polyiodide species in the confined geometry of nanoporous carbon electrodes. However, current descriptions of the electrochemical reaction mechanism to interconvert these species are elusive. Here we show that electrochemical oxidation of iodide in nanoporous carbons forms persistent solid iodine deposits. Confinement slows down dissolution into triiodide and pentaiodide, responsible for otherwise significant self-discharge via shuttling. The main tools for these insights are in situ Raman spectroscopy and in situ small and wide-angle X-ray scattering (in situ SAXS/WAXS). In situ Raman confirms the reversible formation of triiodide and pentaiodide. In situ SAXS/WAXS indicates remarkable amounts of solid iodine deposited in the carbon nanopores. Combined with stochastic modeling, in situ SAXS allows quantifying the solid iodine volume fraction and visualizing the iodine structure on 3D lattice models at the sub-nanometer scale. Based on the derived mechanism, we demonstrate strategies for improved iodine pore filling capacity and prevention of self-discharge, applicable to hybrid supercapacitors and batteries. article_number: '4838' article_processing_charge: No article_type: original author: - first_name: Christian full_name: Prehal, Christian last_name: Prehal - first_name: Harald full_name: Fitzek, Harald last_name: Fitzek - first_name: Gerald full_name: Kothleitner, Gerald last_name: Kothleitner - first_name: Volker full_name: Presser, Volker last_name: Presser - first_name: Bernhard full_name: Gollas, Bernhard last_name: Gollas - first_name: Stefan Alexander full_name: Freunberger, Stefan Alexander id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425 last_name: Freunberger orcid: 0000-0003-2902-5319 - first_name: Qamar full_name: Abbas, Qamar last_name: Abbas citation: ama: Prehal C, Fitzek H, Kothleitner G, et al. Persistent and reversible solid iodine electrodeposition in nanoporous carbons. Nature Communications. 2020;11. doi:10.1038/s41467-020-18610-6 apa: Prehal, C., Fitzek, H., Kothleitner, G., Presser, V., Gollas, B., Freunberger, S. A., & Abbas, Q. (2020). Persistent and reversible solid iodine electrodeposition in nanoporous carbons. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-020-18610-6 chicago: Prehal, Christian, Harald Fitzek, Gerald Kothleitner, Volker Presser, Bernhard Gollas, Stefan Alexander Freunberger, and Qamar Abbas. “Persistent and Reversible Solid Iodine Electrodeposition in Nanoporous Carbons.” Nature Communications. Springer Nature, 2020. https://doi.org/10.1038/s41467-020-18610-6. ieee: C. Prehal et al., “Persistent and reversible solid iodine electrodeposition in nanoporous carbons,” Nature Communications, vol. 11. Springer Nature, 2020. ista: Prehal C, Fitzek H, Kothleitner G, Presser V, Gollas B, Freunberger SA, Abbas Q. 2020. Persistent and reversible solid iodine electrodeposition in nanoporous carbons. Nature Communications. 11, 4838. mla: Prehal, Christian, et al. “Persistent and Reversible Solid Iodine Electrodeposition in Nanoporous Carbons.” Nature Communications, vol. 11, 4838, Springer Nature, 2020, doi:10.1038/s41467-020-18610-6. short: C. Prehal, H. Fitzek, G. Kothleitner, V. Presser, B. Gollas, S.A. Freunberger, Q. Abbas, Nature Communications 11 (2020). corr_author: '1' date_created: 2020-09-25T07:23:13Z date_published: 2020-09-24T00:00:00Z date_updated: 2025-06-12T06:58:51Z day: '24' ddc: - '530' department: - _id: StFr doi: 10.1038/s41467-020-18610-6 external_id: isi: - '000573756600004' pmid: - '32973214' file: - access_level: open_access checksum: eada7bc8dd16a49390137cff882ef328 content_type: application/pdf creator: dernst date_created: 2020-09-28T13:16:15Z date_updated: 2020-09-28T13:16:15Z file_id: '8585' file_name: 2020_NatureComm_Prehal.pdf file_size: 1822469 relation: main_file success: 1 file_date_updated: 2020-09-28T13:16:15Z has_accepted_license: '1' intvolume: ' 11' isi: 1 keyword: - General Biochemistry - Genetics and Molecular Biology - General Physics and Astronomy - General Chemistry language: - iso: eng month: '09' oa: 1 oa_version: Published Version pmid: 1 publication: Nature Communications publication_identifier: issn: - 2041-1723 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: link: - relation: erratum url: https://doi.org/10.1038/s41467-020-19720-x scopus_import: '1' status: public title: Persistent and reversible solid iodine electrodeposition in nanoporous carbons tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 11 year: '2020' ... --- _id: '8973' abstract: - lang: eng text: We consider the symmetric simple exclusion process in Zd with quenched bounded dynamic random conductances and prove its hydrodynamic limit in path space. The main tool is the connection, due to the self-duality of the process, between the invariance principle for single particles starting from all points and the macroscopic behavior of the density field. While the hydrodynamic limit at fixed macroscopic times is obtained via a generalization to the time-inhomogeneous context of the strategy introduced in [41], in order to prove tightness for the sequence of empirical density fields we develop a new criterion based on the notion of uniform conditional stochastic continuity, following [50]. In conclusion, we show that uniform elliptic dynamic conductances provide an example of environments in which the so-called arbitrary starting point invariance principle may be derived from the invariance principle of a single particle starting from the origin. Therefore, our hydrodynamics result applies to the examples of quenched environments considered in, e.g., [1], [3], [6] in combination with the hypothesis of uniform ellipticity. acknowledgement: "We warmly thank S.R.S. Varadhan for many enlightening discussions at an early stage of this work. We are indebted to Francesca Collet for fruitful discussions and constant support all throughout this work. We thank Simone Floreani\r\nand Alberto Chiarini for helpful conversations on the final part of this paper as well as both referees for their careful reading and for raising relevant issues on some weak points contained in a previous version of this manuscript; we believe this helped us to improve it.\r\nPart of this work was done during the authors’ stay at the Institut Henri Poincaré (UMS 5208 CNRS-Sorbonne Université) – Centre Emile Borel during the trimester Stochastic Dynamics Out of Equilibrium. The authors thank this institution for hospitality and support (through LabEx CARMIN, ANR-10-LABX-59-01). F.S. thanks laboratoire\r\nMAP5 of Université de Paris, and E.S. thanks Delft University, for financial support and hospitality. F.S. acknowledges NWO for financial support via the TOP1 grant 613.001.552 as well as funding from the European Union’s Horizon 2020 research and innovation programme under the Marie-Skłodowska-Curie grant agreement No. 754411. This research has been conducted within the FP2M federation (CNRS FR 2036)." article_number: '138' article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Frank full_name: Redig, Frank last_name: Redig - first_name: Ellen full_name: Saada, Ellen last_name: Saada - first_name: Federico full_name: Sau, Federico id: E1836206-9F16-11E9-8814-AEFDE5697425 last_name: Sau citation: ama: 'Redig F, Saada E, Sau F. Symmetric simple exclusion process in dynamic environment: Hydrodynamics. Electronic Journal of Probability. 2020;25. doi:10.1214/20-EJP536' apa: 'Redig, F., Saada, E., & Sau, F. (2020). Symmetric simple exclusion process in dynamic environment: Hydrodynamics. Electronic Journal of Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/20-EJP536' chicago: 'Redig, Frank, Ellen Saada, and Federico Sau. “Symmetric Simple Exclusion Process in Dynamic Environment: Hydrodynamics.” Electronic Journal of Probability. Institute of Mathematical Statistics, 2020. https://doi.org/10.1214/20-EJP536.' ieee: 'F. Redig, E. Saada, and F. Sau, “Symmetric simple exclusion process in dynamic environment: Hydrodynamics,” Electronic Journal of Probability, vol. 25. Institute of Mathematical Statistics, 2020.' ista: 'Redig F, Saada E, Sau F. 2020. Symmetric simple exclusion process in dynamic environment: Hydrodynamics. Electronic Journal of Probability. 25, 138.' mla: 'Redig, Frank, et al. “Symmetric Simple Exclusion Process in Dynamic Environment: Hydrodynamics.” Electronic Journal of Probability, vol. 25, 138, Institute of Mathematical Statistics, 2020, doi:10.1214/20-EJP536.' short: F. Redig, E. Saada, F. Sau, Electronic Journal of Probability 25 (2020). date_created: 2020-12-27T23:01:17Z date_published: 2020-10-21T00:00:00Z date_updated: 2025-04-14T07:43:50Z day: '21' ddc: - '510' department: - _id: JaMa doi: 10.1214/20-EJP536 ec_funded: 1 external_id: arxiv: - '1811.01366' isi: - '000591737500001' file: - access_level: open_access checksum: d75359b9814e78d57c0a481b7cde3751 content_type: application/pdf creator: dernst date_created: 2020-12-28T08:24:08Z date_updated: 2020-12-28T08:24:08Z file_id: '8976' file_name: 2020_ElectronJProbab_Redig.pdf file_size: 696653 relation: main_file success: 1 file_date_updated: 2020-12-28T08:24:08Z has_accepted_license: '1' intvolume: ' 25' isi: 1 language: - iso: eng month: '10' oa: 1 oa_version: Published Version project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publication: Electronic Journal of Probability publication_identifier: eissn: - 1083-6489 publication_status: published publisher: ' Institute of Mathematical Statistics' quality_controlled: '1' scopus_import: '1' status: public title: 'Symmetric simple exclusion process in dynamic environment: Hydrodynamics' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 25 year: '2020' ... --- _id: '9040' abstract: - lang: eng text: Machine learning and formal methods have complimentary benefits and drawbacks. In this work, we address the controller-design problem with a combination of techniques from both fields. The use of black-box neural networks in deep reinforcement learning (deep RL) poses a challenge for such a combination. Instead of reasoning formally about the output of deep RL, which we call the wizard, we extract from it a decision-tree based model, which we refer to as the magic book. Using the extracted model as an intermediary, we are able to handle problems that are infeasible for either deep RL or formal methods by themselves. First, we suggest, for the first time, a synthesis procedure that is based on a magic book. We synthesize a stand-alone correct-by-design controller that enjoys the favorable performance of RL. Second, we incorporate a magic book in a bounded model checking (BMC) procedure. BMC allows us to find numerous traces of the plant under the control of the wizard, which a user can use to increase the trustworthiness of the wizard and direct further training. acknowledgement: This research was supported in part by the Austrian Science Fund (FWF) under grant Z211-N23 (Wittgenstein Award). article_processing_charge: No author: - first_name: Par Alizadeh full_name: Alamdari, Par Alizadeh last_name: Alamdari - first_name: Guy full_name: Avni, Guy id: 463C8BC2-F248-11E8-B48F-1D18A9856A87 last_name: Avni orcid: 0000-0001-5588-8287 - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000-0002-2985-7724 - first_name: Anna full_name: Lukina, Anna id: CBA4D1A8-0FE8-11E9-BDE6-07BFE5697425 last_name: Lukina citation: ama: 'Alamdari PA, Avni G, Henzinger TA, Lukina A. Formal methods with a touch of magic. In: Proceedings of the 20th Conference on Formal Methods in Computer-Aided Design. TU Wien Academic Press; 2020:138-147. doi:10.34727/2020/isbn.978-3-85448-042-6_21' apa: 'Alamdari, P. A., Avni, G., Henzinger, T. A., & Lukina, A. (2020). Formal methods with a touch of magic. In Proceedings of the 20th Conference on Formal Methods in Computer-Aided Design (pp. 138–147). Online Conference: TU Wien Academic Press. https://doi.org/10.34727/2020/isbn.978-3-85448-042-6_21' chicago: Alamdari, Par Alizadeh, Guy Avni, Thomas A Henzinger, and Anna Lukina. “Formal Methods with a Touch of Magic.” In Proceedings of the 20th Conference on Formal Methods in Computer-Aided Design, 138–47. TU Wien Academic Press, 2020. https://doi.org/10.34727/2020/isbn.978-3-85448-042-6_21. ieee: P. A. Alamdari, G. Avni, T. A. Henzinger, and A. Lukina, “Formal methods with a touch of magic,” in Proceedings of the 20th Conference on Formal Methods in Computer-Aided Design, Online Conference, 2020, pp. 138–147. ista: 'Alamdari PA, Avni G, Henzinger TA, Lukina A. 2020. Formal methods with a touch of magic. Proceedings of the 20th Conference on Formal Methods in Computer-Aided Design. FMCAD: Formal Methods in Computer-Aided Design, 138–147.' mla: Alamdari, Par Alizadeh, et al. “Formal Methods with a Touch of Magic.” Proceedings of the 20th Conference on Formal Methods in Computer-Aided Design, TU Wien Academic Press, 2020, pp. 138–47, doi:10.34727/2020/isbn.978-3-85448-042-6_21. short: P.A. Alamdari, G. Avni, T.A. Henzinger, A. Lukina, in:, Proceedings of the 20th Conference on Formal Methods in Computer-Aided Design, TU Wien Academic Press, 2020, pp. 138–147. conference: end_date: 2020-09-24 location: Online Conference name: 'FMCAD: Formal Methods in Computer-Aided Design' start_date: 2020-09-21 date_created: 2021-01-24T23:01:10Z date_published: 2020-09-21T00:00:00Z date_updated: 2025-07-10T12:01:32Z day: '21' ddc: - '000' department: - _id: ToHe doi: 10.34727/2020/isbn.978-3-85448-042-6_21 file: - access_level: open_access checksum: d616d549a0ade78606b16f8a9540820f content_type: application/pdf creator: dernst date_created: 2021-02-09T09:39:02Z date_updated: 2021-02-09T09:39:02Z file_id: '9109' file_name: 2020_FMCAD_Alamdari.pdf file_size: 990999 relation: main_file success: 1 file_date_updated: 2021-02-09T09:39:02Z has_accepted_license: '1' language: - iso: eng month: '09' oa: 1 oa_version: Published Version page: 138-147 project: - _id: 25F42A32-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: Z211 name: Formal methods for the design and analysis of complex systems publication: Proceedings of the 20th Conference on Formal Methods in Computer-Aided Design publication_identifier: eissn: - 2708-7824 isbn: - '9783854480426' publication_status: published publisher: TU Wien Academic Press quality_controlled: '1' scopus_import: '1' status: public title: Formal methods with a touch of magic tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2020' ... --- _id: '7207' abstract: - lang: eng text: The hippocampus plays key roles in learning and memory and is a main target of Alzheimer's disease (AD), which causes progressive memory impairments. Despite numerous investigations about the processes required for the normal hippocampal functions, the neurotransmitter receptors involved in the synaptic deficits by which AD disables the hippocampus are not yet characterized. By combining histoblots, western blots, immunohistochemistry and high‐resolution immunoelectron microscopic methods for GABAB receptors, this study provides a quantitative description of the expression and the subcellular localization of GABAB1 in the hippocampus in a mouse model of AD at 1, 6 and 12 months of age. Western blots and histoblots showed that the total amount of protein and the laminar expression pattern of GABAB1 were similar in APP/PS1 mice and in age‐matched wild‐type mice. In contrast, immunoelectron microscopic techniques showed that the subcellular localization of GABAB1 subunit did not change significantly in APP/PS1 mice at 1 month of age, was significantly reduced in the stratum lacunosum‐moleculare of CA1 pyramidal cells at 6 months of age and significantly reduced at the membrane surface of CA1 pyramidal cells at 12 months of age. This reduction of plasma membrane GABAB1 was paralleled by a significant increase of the subunit at the intracellular sites. We further observed a decrease of membrane‐targeted GABAB receptors in axon terminals contacting CA1 pyramidal cells. Our data demonstrate compartment‐ and age‐dependent reduction of plasma membrane‐targeted GABAB receptors in the CA1 region of the hippocampus, suggesting that this decrease might be enough to alter the GABAB‐mediated synaptic transmission taking place in AD. article_processing_charge: No article_type: original author: - first_name: Alejandro full_name: Martín-Belmonte, Alejandro last_name: Martín-Belmonte - first_name: Carolina full_name: Aguado, Carolina last_name: Aguado - first_name: Rocío full_name: Alfaro-Ruíz, Rocío last_name: Alfaro-Ruíz - first_name: Ana Esther full_name: Moreno-Martínez, Ana Esther last_name: Moreno-Martínez - first_name: Luis full_name: De La Ossa, Luis last_name: De La Ossa - first_name: José full_name: Martínez-Hernández, José last_name: Martínez-Hernández - first_name: Alain full_name: Buisson, Alain last_name: Buisson - first_name: Simon full_name: Früh, Simon last_name: Früh - first_name: Bernhard full_name: Bettler, Bernhard last_name: Bettler - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Yugo full_name: Fukazawa, Yugo last_name: Fukazawa - first_name: Rafael full_name: Luján, Rafael last_name: Luján citation: ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology. 2020;30(3):554-575. doi:10.1111/bpa.12802 apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology. Wiley. https://doi.org/10.1111/bpa.12802 chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, et al. “Reduction in the Neuronal Surface of Post and Presynaptic GABA>B< Receptors in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” Brain Pathology. Wiley, 2020. https://doi.org/10.1111/bpa.12802. ieee: A. Martín-Belmonte et al., “Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer’s disease,” Brain Pathology, vol. 30, no. 3. Wiley, pp. 554–575, 2020. ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa L, Martínez-Hernández J, Buisson A, Früh S, Bettler B, Shigemoto R, Fukazawa Y, Luján R. 2020. Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology. 30(3), 554–575. mla: Martín-Belmonte, Alejandro, et al. “Reduction in the Neuronal Surface of Post and Presynaptic GABA>B< Receptors in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” Brain Pathology, vol. 30, no. 3, Wiley, 2020, pp. 554–75, doi:10.1111/bpa.12802. short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De La Ossa, J. Martínez-Hernández, A. Buisson, S. Früh, B. Bettler, R. Shigemoto, Y. Fukazawa, R. Luján, Brain Pathology 30 (2020) 554–575. date_created: 2019-12-22T23:00:43Z date_published: 2020-05-01T00:00:00Z date_updated: 2025-07-10T11:54:22Z day: '01' ddc: - '570' department: - _id: RySh doi: 10.1111/bpa.12802 ec_funded: 1 external_id: isi: - '000502270900001' pmid: - '31729777' file: - access_level: open_access checksum: 549cc1b18f638a21d17a939ba5563fa9 content_type: application/pdf creator: dernst date_created: 2020-09-22T09:47:19Z date_updated: 2020-09-22T09:47:19Z file_id: '8554' file_name: 2020_BrainPathology_MartinBelmonte.pdf file_size: 4220935 relation: main_file success: 1 file_date_updated: 2020-09-22T09:47:19Z has_accepted_license: '1' intvolume: ' 30' isi: 1 issue: '3' language: - iso: eng month: '05' oa: 1 oa_version: Published Version page: 554-575 pmid: 1 project: - _id: 25CBA828-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '720270' name: Human Brain Project Specific Grant Agreement 1 - _id: 26436750-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '785907' name: Human Brain Project Specific Grant Agreement 2 publication: Brain Pathology publication_identifier: eissn: - 1750-3639 issn: - 1015-6305 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer's disease tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 30 year: '2020' ... --- _id: '7474' abstract: - lang: eng text: This booklet is a collection of abstracts presented at the AHPC conference. article_processing_charge: No citation: ama: 'Schlögl A, Kiss J, Elefante S, eds. Austrian High-Performance-Computing Meeting (AHPC2020). Klosterneuburg, Austria: IST Austria; 2020. doi:10.15479/AT:ISTA:7474' apa: 'Schlögl, A., Kiss, J., & Elefante, S. (Eds.). (2020). Austrian High-Performance-Computing meeting (AHPC2020). Presented at the AHPC: Austrian High-Performance-Computing Meeting, Klosterneuburg, Austria: IST Austria. https://doi.org/10.15479/AT:ISTA:7474' chicago: 'Schlögl, Alois, Janos Kiss, and Stefano Elefante, eds. Austrian High-Performance-Computing Meeting (AHPC2020). Klosterneuburg, Austria: IST Austria, 2020. https://doi.org/10.15479/AT:ISTA:7474.' ieee: 'A. Schlögl, J. Kiss, and S. Elefante, Eds., Austrian High-Performance-Computing meeting (AHPC2020). Klosterneuburg, Austria: IST Austria, 2020.' ista: 'Schlögl A, Kiss J, Elefante S eds. 2020. Austrian High-Performance-Computing meeting (AHPC2020), Klosterneuburg, Austria: IST Austria, 72p.' mla: Schlögl, Alois, et al., editors. Austrian High-Performance-Computing Meeting (AHPC2020). IST Austria, 2020, doi:10.15479/AT:ISTA:7474. short: A. Schlögl, J. Kiss, S. Elefante, eds., Austrian High-Performance-Computing Meeting (AHPC2020), IST Austria, Klosterneuburg, Austria, 2020. conference: end_date: 2020-02-21 location: Klosterneuburg, Austria name: 'AHPC: Austrian High-Performance-Computing Meeting' start_date: 2020-02-19 date_created: 2020-02-11T07:59:04Z date_published: 2020-02-19T00:00:00Z date_updated: 2023-05-16T07:48:28Z day: '19' ddc: - '000' department: - _id: ScienComp doi: 10.15479/AT:ISTA:7474 editor: - first_name: Alois full_name: Schlögl, Alois id: 45BF87EE-F248-11E8-B48F-1D18A9856A87 last_name: Schlögl orcid: 0000-0002-5621-8100 - first_name: Janos full_name: Kiss, Janos id: 3D3A06F8-F248-11E8-B48F-1D18A9856A87 last_name: Kiss - first_name: Stefano full_name: Elefante, Stefano id: 490F40CE-F248-11E8-B48F-1D18A9856A87 last_name: Elefante file: - access_level: open_access checksum: 49798edb9e57bbd6be18362d1d7b18a9 content_type: application/pdf creator: schloegl date_created: 2020-02-19T06:53:38Z date_updated: 2020-07-14T12:47:59Z file_id: '7504' file_name: BOOKLET_AHPC2020.final.pdf file_size: 90899507 relation: main_file file_date_updated: 2020-07-14T12:47:59Z has_accepted_license: '1' language: - iso: eng month: '02' oa: 1 oa_version: Published Version page: '72' place: Klosterneuburg, Austria publication_identifier: isbn: - 978-3-99078-004-6 publication_status: published publisher: IST Austria quality_controlled: '1' status: public title: Austrian High-Performance-Computing meeting (AHPC2020) tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: book_editor user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2020' ... --- _id: '7632' abstract: - lang: eng text: The posterior parietal cortex (PPC) and frontal motor areas comprise a cortical network supporting goal-directed behaviour, with functions including sensorimotor transformations and decision making. In primates, this network links performed and observed actions via mirror neurons, which fire both when individuals perform an action and when they observe the same action performed by a conspecific. Mirror neurons are believed to be important for social learning, but it is not known whether mirror-like neurons occur in similar networks in other social species, such as rodents, or if they can be measured in such models using paradigms where observers passively view a demonstrator. Therefore, we imaged Ca2+ responses in PPC and secondary motor cortex (M2) while mice performed and observed pellet-reaching and wheel-running tasks, and found that cell populations in both areas robustly encoded several naturalistic behaviours. However, neural responses to the same set of observed actions were absent, although we verified that observer mice were attentive to performers and that PPC neurons responded reliably to visual cues. Statistical modelling also indicated that executed actions outperformed observed actions in predicting neural responses. These results raise the possibility that sensorimotor action recognition in rodents could take place outside of the parieto-frontal circuit, and underscore that detecting socially-driven neural coding depends critically on the species and behavioural paradigm used. article_number: '5559' article_processing_charge: No article_type: original author: - first_name: Tuce full_name: Tombaz, Tuce last_name: Tombaz - first_name: Benjamin A. full_name: Dunn, Benjamin A. last_name: Dunn - first_name: Karoline full_name: Hovde, Karoline last_name: Hovde - first_name: Ryan J full_name: Cubero, Ryan J id: 850B2E12-9CD4-11E9-837F-E719E6697425 last_name: Cubero orcid: 0000-0003-0002-1867 - first_name: Bartul full_name: Mimica, Bartul last_name: Mimica - first_name: Pranav full_name: Mamidanna, Pranav last_name: Mamidanna - first_name: Yasser full_name: Roudi, Yasser last_name: Roudi - first_name: Jonathan R. full_name: Whitlock, Jonathan R. last_name: Whitlock citation: ama: Tombaz T, Dunn BA, Hovde K, et al. Action representation in the mouse parieto-frontal network. Scientific reports. 2020;10(1). doi:10.1038/s41598-020-62089-6 apa: Tombaz, T., Dunn, B. A., Hovde, K., Cubero, R. J., Mimica, B., Mamidanna, P., … Whitlock, J. R. (2020). Action representation in the mouse parieto-frontal network. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-020-62089-6 chicago: Tombaz, Tuce, Benjamin A. Dunn, Karoline Hovde, Ryan J Cubero, Bartul Mimica, Pranav Mamidanna, Yasser Roudi, and Jonathan R. Whitlock. “Action Representation in the Mouse Parieto-Frontal Network.” Scientific Reports. Springer Nature, 2020. https://doi.org/10.1038/s41598-020-62089-6. ieee: T. Tombaz et al., “Action representation in the mouse parieto-frontal network,” Scientific reports, vol. 10, no. 1. Springer Nature, 2020. ista: Tombaz T, Dunn BA, Hovde K, Cubero RJ, Mimica B, Mamidanna P, Roudi Y, Whitlock JR. 2020. Action representation in the mouse parieto-frontal network. Scientific reports. 10(1), 5559. mla: Tombaz, Tuce, et al. “Action Representation in the Mouse Parieto-Frontal Network.” Scientific Reports, vol. 10, no. 1, 5559, Springer Nature, 2020, doi:10.1038/s41598-020-62089-6. short: T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y. Roudi, J.R. Whitlock, Scientific Reports 10 (2020). date_created: 2020-04-05T22:00:47Z date_published: 2020-03-27T00:00:00Z date_updated: 2026-04-02T14:23:52Z day: '27' ddc: - '570' department: - _id: SaSi doi: 10.1038/s41598-020-62089-6 external_id: isi: - '000560406800007' file: - access_level: open_access checksum: e6cfaaaf7986532132934400038b824a content_type: application/pdf creator: dernst date_created: 2020-04-06T10:44:23Z date_updated: 2020-07-14T12:48:01Z file_id: '7644' file_name: 2020_ScientificReports_Tombaz.pdf file_size: 2621249 relation: main_file file_date_updated: 2020-07-14T12:48:01Z has_accepted_license: '1' intvolume: ' 10' isi: 1 issue: '1' language: - iso: eng month: '03' oa: 1 oa_version: Published Version publication: Scientific reports publication_identifier: eissn: - 2045-2322 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Action representation in the mouse parieto-frontal network tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd volume: 10 year: '2020' ... --- _id: '9885' abstract: - lang: eng text: Data obtained from the fine-grained simulations used in Figures 2-5, data obtained from the coarse-grained numerical calculations used in Figure 6, and a sample script for the fine-grained simulation as a Jupyter notebook (ZIP) article_processing_charge: No author: - first_name: Mehmet C full_name: Ucar, Mehmet C id: 50B2A802-6007-11E9-A42B-EB23E6697425 last_name: Ucar orcid: 0000-0003-0506-4217 - first_name: Reinhard full_name: Lipowsky, Reinhard last_name: Lipowsky citation: ama: Ucar MC, Lipowsky R. MURL_Dataz. 2020. doi:10.1021/acs.nanolett.9b04445.s002 apa: Ucar, M. C., & Lipowsky, R. (2020). MURL_Dataz. American Chemical Society . https://doi.org/10.1021/acs.nanolett.9b04445.s002 chicago: Ucar, Mehmet C, and Reinhard Lipowsky. “MURL_Dataz.” American Chemical Society , 2020. https://doi.org/10.1021/acs.nanolett.9b04445.s002. ieee: M. C. Ucar and R. Lipowsky, “MURL_Dataz.” American Chemical Society , 2020. ista: Ucar MC, Lipowsky R. 2020. MURL_Dataz, American Chemical Society , 10.1021/acs.nanolett.9b04445.s002. mla: Ucar, Mehmet C., and Reinhard Lipowsky. MURL_Dataz. American Chemical Society , 2020, doi:10.1021/acs.nanolett.9b04445.s002. short: M.C. Ucar, R. Lipowsky, (2020). date_created: 2021-08-11T13:16:03Z date_published: 2020-01-08T00:00:00Z date_updated: 2026-06-18T19:17:32Z day: '08' department: - _id: EdHa doi: 10.1021/acs.nanolett.9b04445.s002 month: '01' oa_version: Published Version publisher: 'American Chemical Society ' related_material: record: - id: '7166' relation: used_in_publication status: public status: public title: MURL_Dataz type: research_data_reference user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf year: '2020' ... --- _id: '8571' abstract: - lang: eng text: We present the results of a friendly competition for formal verification of continuous and hybrid systems with nonlinear continuous dynamics. The friendly competition took place as part of the workshop Applied Verification for Continuous and Hybrid Systems (ARCH) in 2020. This year, 6 tools Ariadne, CORA, DynIbex, Flow*, Isabelle/HOL, and JuliaReach (in alphabetic order) participated. These tools are applied to solve reachability analysis problems on six benchmark problems, two of them featuring hybrid dynamics. We do not rank the tools based on the results, but show the current status and discover the potential advantages of different tools. acknowledgement: Christian Schilling acknowledges support in part by the Austrian Science Fund (FWF) under grant Z211-N23 (Wittgenstein Award) and the European Union’s Horizon 2020 research and innovation programme under the Marie Sk lodowska-Curie grant agreement No. 754411. article_processing_charge: No author: - first_name: Luca full_name: Geretti, Luca last_name: Geretti - first_name: Julien full_name: Alexandre Dit Sandretto, Julien last_name: Alexandre Dit Sandretto - first_name: Matthias full_name: Althoff, Matthias last_name: Althoff - first_name: Luis full_name: Benet, Luis last_name: Benet - first_name: Alexandre full_name: Chapoutot, Alexandre last_name: Chapoutot - first_name: Xin full_name: Chen, Xin last_name: Chen - first_name: Pieter full_name: Collins, Pieter last_name: Collins - first_name: Marcelo full_name: Forets, Marcelo last_name: Forets - first_name: Daniel full_name: Freire, Daniel last_name: Freire - first_name: Fabian full_name: Immler, Fabian last_name: Immler - first_name: Niklas full_name: Kochdumper, Niklas last_name: Kochdumper - first_name: David full_name: Sanders, David last_name: Sanders - first_name: Christian full_name: Schilling, Christian id: 3A2F4DCE-F248-11E8-B48F-1D18A9856A87 last_name: Schilling orcid: 0000-0003-3658-1065 citation: ama: 'Geretti L, Alexandre Dit Sandretto J, Althoff M, et al. ARCH-COMP20 Category Report: Continuous and hybrid systems with nonlinear dynamics. In: EPiC Series in Computing. Vol 74. EasyChair; 2020:49-75. doi:10.29007/zkf6' apa: 'Geretti, L., Alexandre Dit Sandretto, J., Althoff, M., Benet, L., Chapoutot, A., Chen, X., … Schilling, C. (2020). ARCH-COMP20 Category Report: Continuous and hybrid systems with nonlinear dynamics. In EPiC Series in Computing (Vol. 74, pp. 49–75). EasyChair. https://doi.org/10.29007/zkf6' chicago: 'Geretti, Luca, Julien Alexandre Dit Sandretto, Matthias Althoff, Luis Benet, Alexandre Chapoutot, Xin Chen, Pieter Collins, et al. “ARCH-COMP20 Category Report: Continuous and Hybrid Systems with Nonlinear Dynamics.” In EPiC Series in Computing, 74:49–75. EasyChair, 2020. https://doi.org/10.29007/zkf6.' ieee: 'L. Geretti et al., “ARCH-COMP20 Category Report: Continuous and hybrid systems with nonlinear dynamics,” in EPiC Series in Computing, 2020, vol. 74, pp. 49–75.' ista: 'Geretti L, Alexandre Dit Sandretto J, Althoff M, Benet L, Chapoutot A, Chen X, Collins P, Forets M, Freire D, Immler F, Kochdumper N, Sanders D, Schilling C. 2020. ARCH-COMP20 Category Report: Continuous and hybrid systems with nonlinear dynamics. EPiC Series in Computing. ARCH: International Workshop on Applied Verification on Continuous and Hybrid Systems vol. 74, 49–75.' mla: 'Geretti, Luca, et al. “ARCH-COMP20 Category Report: Continuous and Hybrid Systems with Nonlinear Dynamics.” EPiC Series in Computing, vol. 74, EasyChair, 2020, pp. 49–75, doi:10.29007/zkf6.' short: L. Geretti, J. Alexandre Dit Sandretto, M. Althoff, L. Benet, A. Chapoutot, X. Chen, P. Collins, M. Forets, D. Freire, F. Immler, N. Kochdumper, D. Sanders, C. Schilling, in:, EPiC Series in Computing, EasyChair, 2020, pp. 49–75. conference: end_date: 2020-07-12 name: 'ARCH: International Workshop on Applied Verification on Continuous and Hybrid Systems' start_date: 2020-07-12 corr_author: '1' date_created: 2020-09-26T14:41:29Z date_published: 2020-09-25T00:00:00Z date_updated: 2026-06-18T19:34:03Z day: '25' ddc: - '000' department: - _id: ToHe doi: 10.29007/zkf6 ec_funded: 1 intvolume: ' 74' language: - iso: eng main_file_link: - open_access: '1' url: https://easychair.org/publications/download/nrdD month: '09' oa: 1 oa_version: Published Version page: 49-75 project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships - _id: 25F42A32-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: Z211 name: Formal methods for the design and analysis of complex systems publication: EPiC Series in Computing publication_status: published publisher: EasyChair quality_controlled: '1' scopus_import: '1' status: public title: 'ARCH-COMP20 Category Report: Continuous and hybrid systems with nonlinear dynamics' type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 74 year: '2020' ... --- _id: '7161' abstract: - lang: eng text: In this paper, we introduce an inertial projection-type method with different updating strategies for solving quasi-variational inequalities with strongly monotone and Lipschitz continuous operators in real Hilbert spaces. Under standard assumptions, we establish different strong convergence results for the proposed algorithm. Primary numerical experiments demonstrate the potential applicability of our scheme compared with some related methods in the literature. acknowledgement: We are grateful to the anonymous referees and editor whose insightful comments helped to considerably improve an earlier version of this paper. The research of the first author is supported by an ERC Grant from the Institute of Science and Technology (IST). article_processing_charge: No article_type: original author: - first_name: Yekini full_name: Shehu, Yekini id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87 last_name: Shehu orcid: 0000-0001-9224-7139 - first_name: Aviv full_name: Gibali, Aviv last_name: Gibali - first_name: Simone full_name: Sagratella, Simone last_name: Sagratella citation: ama: Shehu Y, Gibali A, Sagratella S. Inertial projection-type methods for solving quasi-variational inequalities in real Hilbert spaces. Journal of Optimization Theory and Applications. 2020;184:877–894. doi:10.1007/s10957-019-01616-6 apa: Shehu, Y., Gibali, A., & Sagratella, S. (2020). Inertial projection-type methods for solving quasi-variational inequalities in real Hilbert spaces. Journal of Optimization Theory and Applications. Springer Nature. https://doi.org/10.1007/s10957-019-01616-6 chicago: Shehu, Yekini, Aviv Gibali, and Simone Sagratella. “Inertial Projection-Type Methods for Solving Quasi-Variational Inequalities in Real Hilbert Spaces.” Journal of Optimization Theory and Applications. Springer Nature, 2020. https://doi.org/10.1007/s10957-019-01616-6. ieee: Y. Shehu, A. Gibali, and S. Sagratella, “Inertial projection-type methods for solving quasi-variational inequalities in real Hilbert spaces,” Journal of Optimization Theory and Applications, vol. 184. Springer Nature, pp. 877–894, 2020. ista: Shehu Y, Gibali A, Sagratella S. 2020. Inertial projection-type methods for solving quasi-variational inequalities in real Hilbert spaces. Journal of Optimization Theory and Applications. 184, 877–894. mla: Shehu, Yekini, et al. “Inertial Projection-Type Methods for Solving Quasi-Variational Inequalities in Real Hilbert Spaces.” Journal of Optimization Theory and Applications, vol. 184, Springer Nature, 2020, pp. 877–894, doi:10.1007/s10957-019-01616-6. short: Y. Shehu, A. Gibali, S. Sagratella, Journal of Optimization Theory and Applications 184 (2020) 877–894. date_created: 2019-12-09T21:33:44Z date_published: 2020-03-01T00:00:00Z date_updated: 2024-11-04T13:52:44Z day: '01' ddc: - '518' - '510' - '515' department: - _id: VlKo doi: 10.1007/s10957-019-01616-6 ec_funded: 1 external_id: isi: - '000511805200009' file: - access_level: open_access checksum: 9f6dc6c6bf2b48cb3a2091a9ed5feaf2 content_type: application/pdf creator: dernst date_created: 2020-10-12T10:40:27Z date_updated: 2021-03-16T23:30:04Z embargo: 2021-03-15 file_id: '8647' file_name: 2020_JourOptimizationTheoryApplic_Shehu.pdf file_size: 332641 relation: main_file file_date_updated: 2021-03-16T23:30:04Z has_accepted_license: '1' intvolume: ' 184' isi: 1 language: - iso: eng month: '03' oa: 1 oa_version: Submitted Version page: 877–894 project: - _id: 25FBA906-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '616160' name: 'Discrete Optimization in Computer Vision: Theory and Practice' publication: Journal of Optimization Theory and Applications publication_identifier: eissn: - 1573-2878 issn: - 0022-3239 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Inertial projection-type methods for solving quasi-variational inequalities in real Hilbert spaces type: journal_article user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1 volume: 184 year: '2020' ... --- _id: '11505' abstract: - lang: eng text: "Contact. This paper presents the results obtained with the Multi-Unit Spectroscopic Explorer (MUSE) at the ESO Very Large Telescope on the faint end of the Lyman-alpha luminosity function (LF) based on deep observations of four lensing clusters. The goal of our project is to set strong constraints on the relative contribution of the Lyman-alpha emitter (LAE) population to cosmic reionization.\r\n\r\nAims. The precise aim of the present study is to further constrain the abundance of LAEs by taking advantage of the magnification provided by lensing clusters to build a blindly selected sample of galaxies which is less biased than current blank field samples in redshift and luminosity. By construction, this sample of LAEs is complementary to those built from deep blank fields, whether observed by MUSE or by other facilities, and makes it possible to determine the shape of the LF at fainter levels, as well as its evolution with redshift.\r\n\r\nMethods. We selected a sample of 156 LAEs with redshifts between 2.9 ≤ z ≤ 6.7 and magnification-corrected luminosities in the range 39 ≲ log LLyα [erg s−1] ≲43. To properly take into account the individual differences in detection conditions between the LAEs when computing the LF, including lensing configurations, and spatial and spectral morphologies, the non-parametric 1/Vmax method was adopted. The price to pay to benefit from magnification is a reduction of the effective volume of the survey, together with a more complex analysis procedure to properly determine the effective volume Vmax for each galaxy. In this paper we present a complete procedure for the determination of the LF based on IFU detections in lensing clusters. This procedure, including some new methods for masking, effective volume integration and (individual) completeness determinations, has been fully automated when possible, and it can be easily generalized to the analysis of IFU observations in blank fields.\r\n\r\nResults. As a result of this analysis, the Lyman-alpha LF has been obtained in four different redshift bins: 2.9 <  z <  6, 7, 2.9 <  z <  4.0, 4.0 <  z <  5.0, and 5.0 <  z <  6.7 with constraints down to log LLyα = 40.5. From our data only, no significant evolution of LF mean slope can be found. When performing a Schechter analysis also including data from the literature to complete the present sample towards the brightest luminosities, a steep faint end slope was measured varying from α = −1.69−0.08+0.08 to α = −1.87−0.12+0.12 between the lowest and the highest redshift bins.\r\n\r\nConclusions. The contribution of the LAE population to the star formation rate density at z ∼ 6 is ≲50% depending on the luminosity limit considered, which is of the same order as the Lyman-break galaxy (LBG) contribution. The evolution of the LAE contribution with redshift depends on the assumed escape fraction of Lyman-alpha photons, and appears to slightly increase with increasing redshift when this fraction is conservatively set to one. Depending on the intersection between the LAE/LBG populations, the contribution of the observed galaxies to the ionizing flux may suffice to keep the universe ionized at z ∼ 6." acknowledgement: We thank the anonymous referee for their critical review and useful suggestions. This work has been carried out thanks to the support of the OCEVU Labex (ANR-11-LABX-0060) and the A*MIDEX project (ANR-11-IDEX-0001-02) funded by the “Investissements d’Avenir” French government programme managed by the ANR. Partially funded by the ERC starting grant CALENDS (JR, VP, BC, JM), the Agence Nationale de la recherche bearing the reference ANR-13-BS05-0010-02 (FOGHAR), and the “Programme National de Cosmologie and Galaxies” (PNCG) of CNRS/INSU, France. GdV, RP, JR, GM, JM, BC, and VP also acknowledge support by the Programa de Cooperacion Cientifica – ECOS SUD Program C16U02. NL acknowledges funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 669253), ABD acknowledges support from the ERC advanced grant “Cosmic Gas”. LW acknowledges support by the Competitive Fund of the Leibniz Association through grant SAW-2015-AIP-2, and TG acknowledges support from the European Research Council under grant agreement ERC-stg-757258 (TRIPLE).. Based on observations made with ESO Telescopes at the La Silla Paranal Observatory under programme IDs 060.A-9345, 094.A-0115, 095.A-0181, 096.A-0710, 097.A0269, 100.A-0249, and 294.A-5032. Also based on observations obtained with the NASA/ESA Hubble Space Telescope, retrieved from the Mikulski Archive for Space Telescopes (MAST) at the Space Telescope Science Institute (STScI). STScI is operated by the Association of Universities for Research in Astronomy, Inc. under NASA contract NAS 5-26555. This research made use of Astropy, a community-developed core Python package for Astronomy (Astropy Collaboration 2013). All plots in this paper were created using Matplotlib (Hunter 2007). article_number: A3 article_processing_charge: No article_type: original arxiv: 1 author: - first_name: G. full_name: de La Vieuville, G. last_name: de La Vieuville - first_name: D. full_name: Bina, D. last_name: Bina - first_name: R. full_name: Pello, R. last_name: Pello - first_name: G. full_name: Mahler, G. last_name: Mahler - first_name: J. full_name: Richard, J. last_name: Richard - first_name: A. B. full_name: Drake, A. B. last_name: Drake - first_name: E. C. full_name: Herenz, E. C. last_name: Herenz - first_name: F. E. full_name: Bauer, F. E. last_name: Bauer - first_name: B. full_name: Clément, B. last_name: Clément - first_name: D. full_name: Lagattuta, D. last_name: Lagattuta - first_name: N. full_name: Laporte, N. last_name: Laporte - first_name: J. full_name: Martinez, J. last_name: Martinez - first_name: V. full_name: Patrício, V. last_name: Patrício - first_name: L. full_name: Wisotzki, L. last_name: Wisotzki - first_name: J. full_name: Zabl, J. last_name: Zabl - first_name: R. J. full_name: Bouwens, R. J. last_name: Bouwens - first_name: T. full_name: Contini, T. last_name: Contini - first_name: T. full_name: Garel, T. last_name: Garel - first_name: B. full_name: Guiderdoni, B. last_name: Guiderdoni - first_name: R. A. full_name: Marino, R. A. last_name: Marino - first_name: M. V. full_name: Maseda, M. V. last_name: Maseda - first_name: Jorryt J full_name: Matthee, Jorryt J id: 7439a258-f3c0-11ec-9501-9df22fe06720 last_name: Matthee orcid: 0000-0003-2871-127X - first_name: J. full_name: Schaye, J. last_name: Schaye - first_name: G. full_name: Soucail, G. last_name: Soucail citation: ama: de La Vieuville G, Bina D, Pello R, et al. Faint end of the z ∼ 3–7 luminosity function of Lyman-alpha emitters behind lensing clusters observed with MUSE. Astronomy & Astrophysics. 2019;628. doi:10.1051/0004-6361/201834471 apa: de La Vieuville, G., Bina, D., Pello, R., Mahler, G., Richard, J., Drake, A. B., … Soucail, G. (2019). Faint end of the z ∼ 3–7 luminosity function of Lyman-alpha emitters behind lensing clusters observed with MUSE. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/201834471 chicago: La Vieuville, G. de, D. Bina, R. Pello, G. Mahler, J. Richard, A. B. Drake, E. C. Herenz, et al. “Faint End of the z ∼ 3–7 Luminosity Function of Lyman-Alpha Emitters behind Lensing Clusters Observed with MUSE.” Astronomy & Astrophysics. EDP Sciences, 2019. https://doi.org/10.1051/0004-6361/201834471. ieee: G. de La Vieuville et al., “Faint end of the z ∼ 3–7 luminosity function of Lyman-alpha emitters behind lensing clusters observed with MUSE,” Astronomy & Astrophysics, vol. 628. EDP Sciences, 2019. ista: de La Vieuville G, Bina D, Pello R, Mahler G, Richard J, Drake AB, Herenz EC, Bauer FE, Clément B, Lagattuta D, Laporte N, Martinez J, Patrício V, Wisotzki L, Zabl J, Bouwens RJ, Contini T, Garel T, Guiderdoni B, Marino RA, Maseda MV, Matthee JJ, Schaye J, Soucail G. 2019. Faint end of the z ∼ 3–7 luminosity function of Lyman-alpha emitters behind lensing clusters observed with MUSE. Astronomy & Astrophysics. 628, A3. mla: de La Vieuville, G., et al. “Faint End of the z ∼ 3–7 Luminosity Function of Lyman-Alpha Emitters behind Lensing Clusters Observed with MUSE.” Astronomy & Astrophysics, vol. 628, A3, EDP Sciences, 2019, doi:10.1051/0004-6361/201834471. short: G. de La Vieuville, D. Bina, R. Pello, G. Mahler, J. Richard, A.B. Drake, E.C. Herenz, F.E. Bauer, B. Clément, D. Lagattuta, N. Laporte, J. Martinez, V. Patrício, L. Wisotzki, J. Zabl, R.J. Bouwens, T. Contini, T. Garel, B. Guiderdoni, R.A. Marino, M.V. Maseda, J.J. Matthee, J. Schaye, G. Soucail, Astronomy & Astrophysics 628 (2019). date_created: 2022-07-06T10:09:36Z date_published: 2019-07-25T00:00:00Z date_updated: 2022-07-19T09:36:31Z day: '25' doi: 10.1051/0004-6361/201834471 extern: '1' external_id: arxiv: - '1905.13696' intvolume: ' 628' keyword: - Space and Planetary Science - Astronomy and Astrophysics - 'gravitational lensing: strong / galaxies: high-redshift / dark ages' - reionization - 'first stars / galaxies: clusters: general / galaxies: luminosity function' - mass function language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1905.13696 month: '07' oa: 1 oa_version: Published Version publication: Astronomy & Astrophysics publication_identifier: eissn: - 1432-0746 issn: - 0004-6361 publication_status: published publisher: EDP Sciences quality_controlled: '1' scopus_import: '1' status: public title: Faint end of the z ∼ 3–7 luminosity function of Lyman-alpha emitters behind lensing clusters observed with MUSE type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 628 year: '2019' ... --- _id: '11535' abstract: - lang: eng text: We investigate the clustering and halo properties of ∼5000 Ly α-selected emission-line galaxies (LAEs) from the Slicing COSMOS 4K (SC4K) and from archival NB497 imaging of SA22 split in 15 discrete redshift slices between z ∼ 2.5 and 6. We measure clustering lengths of r0 ∼ 3–6 h−1 Mpc and typical halo masses of ∼1011 M⊙ for our narrowband-selected LAEs with typical LLy α ∼ 1042–43 erg s−1. The intermediate-band-selected LAEs are observed to have r0 ∼ 3.5–15 h−1 Mpc with typical halo masses of ∼1011–12 M⊙ and typical LLy α ∼ 1043–43.6 erg s−1. We find a strong, redshift-independent correlation between halo mass and Ly α luminosity normalized by the characteristic Ly α luminosity, L⋆(z). The faintest LAEs (L ∼ 0.1 L⋆(z)) typically identified by deep narrowband surveys are found in 1010 M⊙ haloes and the brightest LAEs (L ∼ 7 L⋆(z)) are found in ∼5 × 1012 M⊙ haloes. A dependency on the rest-frame 1500 Å UV luminosity, MUV, is also observed where the halo masses increase from 1011 to 1013 M⊙ for MUV ∼ −19 to −23.5 mag. Halo mass is also observed to increase from 109.8 to 1012 M⊙ for dust-corrected UV star formation rates from ∼0.6 to 10 M⊙ yr−1 and continues to increase up to 1013 M⊙ in halo mass, where the majority of those sources are active galactic nuclei. All the trends we observe are found to be redshift independent. Our results reveal that LAEs are the likely progenitors of a wide range of galaxies depending on their luminosity, from dwarf-like, to Milky Way-type, to bright cluster galaxies. LAEs therefore provide unique insight into the early formation and evolution of the galaxies we observe in the local Universe. acknowledgement: We thank the anonymous referee for their useful comments and suggestions that helped improve this study. AAK acknowledges that this work was supported by NASA Headquarters under the NASA Earth and Space Science Fellowship Program – Grant NNX16AO92H. JM acknowledges support from the ETH Zwicky fellowship. RKC acknowledges funding from STFC via a studentship. APA acknowledges support from the Fundac¸ao para a Ci ˜ encia e a Tecnologia FCT through the fellowship PD/BD/52706/2014 and the research grant UID/FIS/04434/2013. JC and SS both acknowledge their support from the Lancaster University PhD Fellowship. We have benefited greatly from the publicly available programming language PYTHON, including the NUMPY, SCIPY, MATPLOTLIB, SCIKIT-LEARN, and ASTROPY packages, as well as the TOPCAT analysis program. The SC4K samples used in this paper are all publicly available for use by the community (Sobral et al. 2018a). The catalogue is also available on the COSMOS IPAC website (https://irsa.ipac.caltech.edu/data/COSMOS/overview.html). article_processing_charge: No article_type: original arxiv: 1 author: - first_name: A A full_name: Khostovan, A A last_name: Khostovan - first_name: D full_name: Sobral, D last_name: Sobral - first_name: B full_name: Mobasher, B last_name: Mobasher - first_name: Jorryt J full_name: Matthee, Jorryt J id: 7439a258-f3c0-11ec-9501-9df22fe06720 last_name: Matthee orcid: 0000-0003-2871-127X - first_name: R K full_name: Cochrane, R K last_name: Cochrane - first_name: N full_name: Chartab, N last_name: Chartab - first_name: M full_name: Jafariyazani, M last_name: Jafariyazani - first_name: A full_name: Paulino-Afonso, A last_name: Paulino-Afonso - first_name: S full_name: Santos, S last_name: Santos - first_name: J full_name: Calhau, J last_name: Calhau citation: ama: 'Khostovan AA, Sobral D, Mobasher B, et al. The clustering of typical Ly α emitters from z ∼ 2.5–6: Host halo masses depend on Ly α and UV luminosities. Monthly Notices of the Royal Astronomical Society. 2019;489(1):555-573. doi:10.1093/mnras/stz2149' apa: 'Khostovan, A. A., Sobral, D., Mobasher, B., Matthee, J. J., Cochrane, R. K., Chartab, N., … Calhau, J. (2019). The clustering of typical Ly α emitters from z ∼ 2.5–6: Host halo masses depend on Ly α and UV luminosities. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/stz2149' chicago: 'Khostovan, A A, D Sobral, B Mobasher, Jorryt J Matthee, R K Cochrane, N Chartab, M Jafariyazani, A Paulino-Afonso, S Santos, and J Calhau. “The Clustering of Typical Ly α Emitters from z ∼ 2.5–6: Host Halo Masses Depend on Ly α and UV Luminosities.” Monthly Notices of the Royal Astronomical Society. Oxford University Press, 2019. https://doi.org/10.1093/mnras/stz2149.' ieee: 'A. A. Khostovan et al., “The clustering of typical Ly α emitters from z ∼ 2.5–6: Host halo masses depend on Ly α and UV luminosities,” Monthly Notices of the Royal Astronomical Society, vol. 489, no. 1. Oxford University Press, pp. 555–573, 2019.' ista: 'Khostovan AA, Sobral D, Mobasher B, Matthee JJ, Cochrane RK, Chartab N, Jafariyazani M, Paulino-Afonso A, Santos S, Calhau J. 2019. The clustering of typical Ly α emitters from z ∼ 2.5–6: Host halo masses depend on Ly α and UV luminosities. Monthly Notices of the Royal Astronomical Society. 489(1), 555–573.' mla: 'Khostovan, A. A., et al. “The Clustering of Typical Ly α Emitters from z ∼ 2.5–6: Host Halo Masses Depend on Ly α and UV Luminosities.” Monthly Notices of the Royal Astronomical Society, vol. 489, no. 1, Oxford University Press, 2019, pp. 555–73, doi:10.1093/mnras/stz2149.' short: A.A. Khostovan, D. Sobral, B. Mobasher, J.J. Matthee, R.K. Cochrane, N. Chartab, M. Jafariyazani, A. Paulino-Afonso, S. Santos, J. Calhau, Monthly Notices of the Royal Astronomical Society 489 (2019) 555–573. date_created: 2022-07-07T13:01:03Z date_published: 2019-10-01T00:00:00Z date_updated: 2022-08-19T06:38:42Z day: '01' doi: 10.1093/mnras/stz2149 extern: '1' external_id: arxiv: - '1811.00556' intvolume: ' 489' issue: '1' keyword: - Space and Planetary Science - Astronomy and Astrophysics - 'galaxies: evolution' - 'galaxies: haloes' - 'galaxies: high-redshift' - 'galaxies: star formation' - 'cosmology: observations' - large-scale structure of Universe language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1811.00556 month: '10' oa: 1 oa_version: Preprint page: 555-573 publication: Monthly Notices of the Royal Astronomical Society publication_identifier: eissn: - 1365-2966 issn: - 0035-8711 publication_status: published publisher: Oxford University Press quality_controlled: '1' scopus_import: '1' status: public title: 'The clustering of typical Ly α emitters from z ∼ 2.5–6: Host halo masses depend on Ly α and UV luminosities' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 489 year: '2019' ... --- _id: '11850' abstract: - lang: eng text: 'Modern networked systems are increasingly reconfigurable, enabling demand-aware infrastructures whose resources can be adjusted according to the workload they currently serve. Such dynamic adjustments can be exploited to improve network utilization and hence performance, by moving frequently interacting communication partners closer, e.g., collocating them in the same server or datacenter. However, dynamically changing the embedding of workloads is algorithmically challenging: communication patterns are often not known ahead of time, but must be learned. During the learning process, overheads related to unnecessary moves (i.e., re-embeddings) should be minimized. This paper studies a fundamental model which captures the tradeoff between the benefits and costs of dynamically collocating communication partners on l servers, in an online manner. Our main contribution is a distributed online algorithm which is asymptotically almost optimal, i.e., almost matches the lower bound (also derived in this paper) on the competitive ratio of any (distributed or centralized) online algorithm.' article_processing_charge: No arxiv: 1 author: - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Stefan full_name: Neumann, Stefan last_name: Neumann - first_name: Stefan full_name: Schmid, Stefan last_name: Schmid citation: ama: 'Henzinger M, Neumann S, Schmid S. Efficient distributed workload (re-)embedding. In: SIGMETRICS’19: International Conference on Measurement and Modeling of Computer Systems. Association for Computing Machinery; 2019:43–44. doi:10.1145/3309697.3331503' apa: 'Henzinger, M., Neumann, S., & Schmid, S. (2019). Efficient distributed workload (re-)embedding. In SIGMETRICS’19: International Conference on Measurement and Modeling of Computer Systems (pp. 43–44). Phoenix, AZ, United States: Association for Computing Machinery. https://doi.org/10.1145/3309697.3331503' chicago: 'Henzinger, Monika, Stefan Neumann, and Stefan Schmid. “Efficient Distributed Workload (Re-)Embedding.” In SIGMETRICS’19: International Conference on Measurement and Modeling of Computer Systems, 43–44. Association for Computing Machinery, 2019. https://doi.org/10.1145/3309697.3331503.' ieee: 'M. Henzinger, S. Neumann, and S. Schmid, “Efficient distributed workload (re-)embedding,” in SIGMETRICS’19: International Conference on Measurement and Modeling of Computer Systems, Phoenix, AZ, United States, 2019, pp. 43–44.' ista: 'Henzinger M, Neumann S, Schmid S. 2019. Efficient distributed workload (re-)embedding. SIGMETRICS’19: International Conference on Measurement and Modeling of Computer Systems. SIGMETRICS: International Conference on Measurement and Modeling of Computer Systems, 43–44.' mla: 'Henzinger, Monika, et al. “Efficient Distributed Workload (Re-)Embedding.” SIGMETRICS’19: International Conference on Measurement and Modeling of Computer Systems, Association for Computing Machinery, 2019, pp. 43–44, doi:10.1145/3309697.3331503.' short: 'M. Henzinger, S. Neumann, S. Schmid, in:, SIGMETRICS’19: International Conference on Measurement and Modeling of Computer Systems, Association for Computing Machinery, 2019, pp. 43–44.' conference: end_date: 2019-06-28 location: Phoenix, AZ, United States name: 'SIGMETRICS: International Conference on Measurement and Modeling of Computer Systems' start_date: 2019-06-24 date_created: 2022-08-16T07:14:57Z date_published: 2019-06-20T00:00:00Z date_updated: 2024-11-06T12:17:32Z day: '20' doi: 10.1145/3309697.3331503 extern: '1' external_id: arxiv: - '1904.05474' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1904.05474 month: '06' oa: 1 oa_version: Preprint page: 43–44 publication: 'SIGMETRICS''19: International Conference on Measurement and Modeling of Computer Systems' publication_identifier: isbn: - 978-1-4503-6678-6 publication_status: published publisher: Association for Computing Machinery quality_controlled: '1' scopus_import: '1' status: public title: Efficient distributed workload (re-)embedding type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2019' ... --- _id: '11851' abstract: - lang: eng text: The minimum cut problem for an undirected edge-weighted graph asks us to divide its set of nodes into two blocks while minimizing the weighted sum of the cut edges. In this paper, we engineer the fastest known exact algorithm for the problem. State-of-the-art algorithms like the algorithm of Padberg and Rinaldi or the algorithm of Nagamochi, Ono and Ibaraki identify edges that can be contracted to reduce the graph size such that at least one minimum cut is maintained in the contracted graph. Our algorithm achieves improvements in running time over these algorithms by a multitude of techniques. First, we use a recently developed fast and parallel inexact minimum cut algorithm to obtain a better bound for the problem. Afterwards, we use reductions that depend on this bound to reduce the size of the graph much faster than previously possible. We use improved data structures to further lower the running time of our algorithm. Additionally, we parallelize the contraction routines of Nagamochi et al. . Overall, we arrive at a system that significantly outperforms the fastest state-of-the-art solvers for the exact minimum cut problem. article_number: '8820968' article_processing_charge: No arxiv: 1 author: - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Alexander full_name: Noe, Alexander last_name: Noe - first_name: Christian full_name: Schulz, Christian last_name: Schulz citation: ama: 'Henzinger M, Noe A, Schulz C. Shared-memory exact minimum cuts. In: 33rd International Parallel and Distributed Processing Symposium. Institute of Electrical and Electronics Engineers; 2019. doi:10.1109/ipdps.2019.00013' apa: 'Henzinger, M., Noe, A., & Schulz, C. (2019). Shared-memory exact minimum cuts. In 33rd International Parallel and Distributed Processing Symposium. Rio de Janeiro, Brazil: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/ipdps.2019.00013' chicago: Henzinger, Monika, Alexander Noe, and Christian Schulz. “Shared-Memory Exact Minimum Cuts.” In 33rd International Parallel and Distributed Processing Symposium. Institute of Electrical and Electronics Engineers, 2019. https://doi.org/10.1109/ipdps.2019.00013. ieee: M. Henzinger, A. Noe, and C. Schulz, “Shared-memory exact minimum cuts,” in 33rd International Parallel and Distributed Processing Symposium, Rio de Janeiro, Brazil, 2019. ista: 'Henzinger M, Noe A, Schulz C. 2019. Shared-memory exact minimum cuts. 33rd International Parallel and Distributed Processing Symposium. IPDPS: International Parallel and Distributed Processing Symposium, 8820968.' mla: Henzinger, Monika, et al. “Shared-Memory Exact Minimum Cuts.” 33rd International Parallel and Distributed Processing Symposium, 8820968, Institute of Electrical and Electronics Engineers, 2019, doi:10.1109/ipdps.2019.00013. short: M. Henzinger, A. Noe, C. Schulz, in:, 33rd International Parallel and Distributed Processing Symposium, Institute of Electrical and Electronics Engineers, 2019. conference: end_date: 2019-05-24 location: Rio de Janeiro, Brazil name: 'IPDPS: International Parallel and Distributed Processing Symposium' start_date: 2019-05-20 date_created: 2022-08-16T07:25:23Z date_published: 2019-05-01T00:00:00Z date_updated: 2024-11-06T12:17:43Z day: '01' doi: 10.1109/ipdps.2019.00013 extern: '1' external_id: arxiv: - '1808.05458' language: - iso: eng main_file_link: - url: https://arxiv.org/abs/1808.05458 month: '05' oa_version: Preprint publication: 33rd International Parallel and Distributed Processing Symposium publication_identifier: eisbn: - 978-1-7281-1246-6 eissn: - 1530-2075 isbn: - 978-1-7281-1247-3 publication_status: published publisher: Institute of Electrical and Electronics Engineers quality_controlled: '1' related_material: record: - id: '11851' relation: later_version status: public scopus_import: '1' status: public title: Shared-memory exact minimum cuts type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2019' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold _id: '17924' abstract: - lang: eng text: We demonstrate that imidazole based π–π stacked dimers form strong and efficient conductance pathways in single-molecule junctions using the scanning-tunneling microscope-break junction (STM-BJ) technique and density functional theory-based calculations. We first characterize an imidazole-gold contact by measuring the conductance of imidazolyl-terminated alkanes (im-N-im, N = 3–6). We show that the conductance of these alkanes decays exponentially with increasing length, indicating that the mechanism for electron transport is through tunneling or super-exchange. We also reveal that π–π stacked dimers can be formed between imidazoles and have better coupling than through-bond tunneling. These experimental results are rationalized by calculations of molecular junction transmission using non-equilibrium Green's function formalism. This study verifies the capability of imidazole as a Au-binding ligand to form stable single- and π-stacked molecule junctions at room temperature. article_processing_charge: Yes article_type: original author: - first_name: Tianren full_name: Fu, Tianren last_name: Fu - first_name: Shanelle full_name: Smith, Shanelle last_name: Smith - first_name: María full_name: Camarasa-Gómez, María last_name: Camarasa-Gómez - first_name: Xiaofang full_name: Yu, Xiaofang last_name: Yu - first_name: Jiayi full_name: Xue, Jiayi last_name: Xue - first_name: Colin full_name: Nuckolls, Colin last_name: Nuckolls - first_name: Ferdinand full_name: Evers, Ferdinand last_name: Evers - first_name: Latha full_name: Venkataraman, Latha id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf last_name: Venkataraman orcid: 0000-0002-6957-6089 - first_name: Sujun full_name: Wei, Sujun last_name: Wei citation: ama: Fu T, Smith S, Camarasa-Gómez M, et al. Enhanced coupling through π-stacking in imidazole-based molecular junctions. Chemical Science. 2019;10(43):9998-10002. doi:10.1039/c9sc03760h apa: Fu, T., Smith, S., Camarasa-Gómez, M., Yu, X., Xue, J., Nuckolls, C., … Wei, S. (2019). Enhanced coupling through π-stacking in imidazole-based molecular junctions. Chemical Science. Royal Society of Chemistry. https://doi.org/10.1039/c9sc03760h chicago: Fu, Tianren, Shanelle Smith, María Camarasa-Gómez, Xiaofang Yu, Jiayi Xue, Colin Nuckolls, Ferdinand Evers, Latha Venkataraman, and Sujun Wei. “Enhanced Coupling through π-Stacking in Imidazole-Based Molecular Junctions.” Chemical Science. Royal Society of Chemistry, 2019. https://doi.org/10.1039/c9sc03760h. ieee: T. Fu et al., “Enhanced coupling through π-stacking in imidazole-based molecular junctions,” Chemical Science, vol. 10, no. 43. Royal Society of Chemistry, pp. 9998–10002, 2019. ista: Fu T, Smith S, Camarasa-Gómez M, Yu X, Xue J, Nuckolls C, Evers F, Venkataraman L, Wei S. 2019. Enhanced coupling through π-stacking in imidazole-based molecular junctions. Chemical Science. 10(43), 9998–10002. mla: Fu, Tianren, et al. “Enhanced Coupling through π-Stacking in Imidazole-Based Molecular Junctions.” Chemical Science, vol. 10, no. 43, Royal Society of Chemistry, 2019, pp. 9998–10002, doi:10.1039/c9sc03760h. short: T. Fu, S. Smith, M. Camarasa-Gómez, X. Yu, J. Xue, C. Nuckolls, F. Evers, L. Venkataraman, S. Wei, Chemical Science 10 (2019) 9998–10002. date_created: 2024-09-09T07:49:24Z date_published: 2019-09-16T00:00:00Z date_updated: 2024-12-11T08:08:34Z day: '16' doi: 10.1039/c9sc03760h extern: '1' external_id: pmid: - '32055356' intvolume: ' 10' issue: '43' language: - iso: eng license: https://creativecommons.org/licenses/by-nc/3.0/ main_file_link: - open_access: '1' url: https://doi.org/10.1039/C9SC03760H month: '09' oa: 1 oa_version: Published Version page: 9998-10002 pmid: 1 publication: Chemical Science publication_identifier: eissn: - 2041-6539 issn: - 2041-6520 publication_status: published publisher: Royal Society of Chemistry quality_controlled: '1' scopus_import: '1' status: public title: Enhanced coupling through π-stacking in imidazole-based molecular junctions tmp: image: /images/cc_by_nc.png legal_code_url: https://creativecommons.org/licenses/by-nc/3.0/legalcode name: Creative Commons Attribution-NonCommercial 3.0 Unported (CC BY-NC 3.0) short: CC BY-NC (3.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 10 year: '2019' ... --- _id: '15230' abstract: - lang: eng text: 'We have searched the Gaia DR2 catalog for previously unknown hot white dwarfs in the direction of young open star clusters. The aim of this experiment was to try and extend the initial–final mass relation (IFMR) to somewhat higher masses, potentially challenging the Chandrasekhar limit currently thought to be around 1.38 M⊙. We discovered a particularly interesting white dwarf in the direction of the young ∼150 Myr old cluster Messier 47 (NGC 2422). All Gaia indicators (proper motion, parallax, location in the Gaia color–magnitude diagram) suggest that it is a cluster member. Its spectrum, obtained from Gemini-South, yields a number of anomalies: it is a DB (helium-rich atmosphere) white dwarf, it has a large magnetic field (2.5 MG), is of high mass (∼1.06 M⊙), and its colors are very peculiar—particularly the redder ones (r, i, z and y), which suggests that it may have a late-type companion. This may be the only magnetized, detached binary white dwarf with a non-degenerate companion of any spectral type known in or out of a star cluster. If the white dwarf is a cluster member, as all indicators suggest, its progenitor had a mass just over 6 M⊙. It may, however, be telling an even more interesting story than the one related to the IFMR, one about the origin of stellar magnetic fields, SNe I, and gravitational waves from low-mass stellar systems.' article_number: '75' article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Harvey B. full_name: Richer, Harvey B. last_name: Richer - first_name: Ronan full_name: Kerr, Ronan last_name: Kerr - first_name: Jeremy full_name: Heyl, Jeremy last_name: Heyl - first_name: Ilaria full_name: Caiazzo, Ilaria id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d last_name: Caiazzo orcid: 0000-0002-4770-5388 - first_name: Jeffrey full_name: Cummings, Jeffrey last_name: Cummings - first_name: Pierre full_name: Bergeron, Pierre last_name: Bergeron - first_name: Patrick full_name: Dufour, Patrick last_name: Dufour citation: ama: Richer HB, Kerr R, Heyl J, et al. A massive magnetic helium atmosphere white dwarf binary in a young star cluster. The Astrophysical Journal. 2019;880(2). doi:10.3847/1538-4357/ab2874 apa: Richer, H. B., Kerr, R., Heyl, J., Caiazzo, I., Cummings, J., Bergeron, P., & Dufour, P. (2019). A massive magnetic helium atmosphere white dwarf binary in a young star cluster. The Astrophysical Journal. American Astronomical Society. https://doi.org/10.3847/1538-4357/ab2874 chicago: Richer, Harvey B., Ronan Kerr, Jeremy Heyl, Ilaria Caiazzo, Jeffrey Cummings, Pierre Bergeron, and Patrick Dufour. “A Massive Magnetic Helium Atmosphere White Dwarf Binary in a Young Star Cluster.” The Astrophysical Journal. American Astronomical Society, 2019. https://doi.org/10.3847/1538-4357/ab2874. ieee: H. B. Richer et al., “A massive magnetic helium atmosphere white dwarf binary in a young star cluster,” The Astrophysical Journal, vol. 880, no. 2. American Astronomical Society, 2019. ista: Richer HB, Kerr R, Heyl J, Caiazzo I, Cummings J, Bergeron P, Dufour P. 2019. A massive magnetic helium atmosphere white dwarf binary in a young star cluster. The Astrophysical Journal. 880(2), 75. mla: Richer, Harvey B., et al. “A Massive Magnetic Helium Atmosphere White Dwarf Binary in a Young Star Cluster.” The Astrophysical Journal, vol. 880, no. 2, 75, American Astronomical Society, 2019, doi:10.3847/1538-4357/ab2874. short: H.B. Richer, R. Kerr, J. Heyl, I. Caiazzo, J. Cummings, P. Bergeron, P. Dufour, The Astrophysical Journal 880 (2019). date_created: 2024-03-26T10:37:01Z date_published: 2019-07-26T00:00:00Z date_updated: 2024-04-04T14:06:08Z day: '26' doi: 10.3847/1538-4357/ab2874 extern: '1' external_id: arxiv: - '1906.04727' intvolume: ' 880' issue: '2' keyword: - Space and Planetary Science - Astronomy and Astrophysics language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.1906.04727 month: '07' oa: 1 oa_version: Preprint publication: The Astrophysical Journal publication_identifier: eissn: - 1538-4357 issn: - 0004-637X publication_status: published publisher: American Astronomical Society quality_controlled: '1' scopus_import: '1' status: public title: A massive magnetic helium atmosphere white dwarf binary in a young star cluster type: journal_article user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 880 year: '2019' ... --- _id: '10874' abstract: - lang: eng text: In this article we prove an analogue of a theorem of Lachaud, Ritzenthaler, and Zykin, which allows us to connect invariants of binary octics to Siegel modular forms of genus 3. We use this connection to show that certain modular functions, when restricted to the hyperelliptic locus, assume values whose denominators are products of powers of primes of bad reduction for the associated hyperelliptic curves. We illustrate our theorem with explicit computations. This work is motivated by the study of the values of these modular functions at CM points of the Siegel upper half-space, which, if their denominators are known, can be used to effectively compute models of (hyperelliptic, in our case) curves with CM. acknowledgement: "The authors would like to thank the Lorentz Center in Leiden for hosting the Women in Numbers Europe 2 workshop and providing a productive and enjoyable environment for our initial work on this project. We are grateful to the organizers of WIN-E2, Irene Bouw, Rachel Newton and Ekin Ozman, for making this conference and this collaboration possible. We\r\nthank Irene Bouw and Christophe Ritzenhaler for helpful discussions. Ionica acknowledges support from the Thomas Jefferson Fund of the Embassy of France in the United States and the FACE Foundation. Most of Kılıçer’s work was carried out during her stay in Universiteit Leiden and Carl von Ossietzky Universität Oldenburg. Massierer was supported by the Australian Research Council (DP150101689). Vincent is supported by the National Science Foundation under Grant No. DMS-1802323 and by the Thomas Jefferson Fund of the Embassy of France in the United States and the FACE Foundation. " article_number: '9' article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Sorina full_name: Ionica, Sorina last_name: Ionica - first_name: Pınar full_name: Kılıçer, Pınar last_name: Kılıçer - first_name: Kristin full_name: Lauter, Kristin last_name: Lauter - first_name: Elisa full_name: Lorenzo García, Elisa last_name: Lorenzo García - first_name: Maria-Adelina full_name: Manzateanu, Maria-Adelina id: be8d652e-a908-11ec-82a4-e2867729459c last_name: Manzateanu - first_name: Maike full_name: Massierer, Maike last_name: Massierer - first_name: Christelle full_name: Vincent, Christelle last_name: Vincent citation: ama: Ionica S, Kılıçer P, Lauter K, et al. Modular invariants for genus 3 hyperelliptic curves. Research in Number Theory. 2019;5. doi:10.1007/s40993-018-0146-6 apa: Ionica, S., Kılıçer, P., Lauter, K., Lorenzo García, E., Manzateanu, M.-A., Massierer, M., & Vincent, C. (2019). Modular invariants for genus 3 hyperelliptic curves. Research in Number Theory. Springer Nature. https://doi.org/10.1007/s40993-018-0146-6 chicago: Ionica, Sorina, Pınar Kılıçer, Kristin Lauter, Elisa Lorenzo García, Maria-Adelina Manzateanu, Maike Massierer, and Christelle Vincent. “Modular Invariants for Genus 3 Hyperelliptic Curves.” Research in Number Theory. Springer Nature, 2019. https://doi.org/10.1007/s40993-018-0146-6. ieee: S. Ionica et al., “Modular invariants for genus 3 hyperelliptic curves,” Research in Number Theory, vol. 5. Springer Nature, 2019. ista: Ionica S, Kılıçer P, Lauter K, Lorenzo García E, Manzateanu M-A, Massierer M, Vincent C. 2019. Modular invariants for genus 3 hyperelliptic curves. Research in Number Theory. 5, 9. mla: Ionica, Sorina, et al. “Modular Invariants for Genus 3 Hyperelliptic Curves.” Research in Number Theory, vol. 5, 9, Springer Nature, 2019, doi:10.1007/s40993-018-0146-6. short: S. Ionica, P. Kılıçer, K. Lauter, E. Lorenzo García, M.-A. Manzateanu, M. Massierer, C. Vincent, Research in Number Theory 5 (2019). date_created: 2022-03-18T12:09:48Z date_published: 2019-01-02T00:00:00Z date_updated: 2023-09-05T15:39:31Z day: '02' department: - _id: TiBr doi: 10.1007/s40993-018-0146-6 external_id: arxiv: - '1807.08986' intvolume: ' 5' keyword: - Algebra and Number Theory language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1807.08986 month: '01' oa: 1 oa_version: Preprint publication: Research in Number Theory publication_identifier: eissn: - 2363-9555 issn: - 2522-0160 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Modular invariants for genus 3 hyperelliptic curves type: journal_article user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1 volume: 5 year: '2019' ... --- _id: '170' abstract: - lang: eng text: Upper and lower bounds, of the expected order of magnitude, are obtained for the number of rational points of bounded height on any quartic del Pezzo surface over ℚ that contains a conic defined over ℚ . arxiv: 1 author: - first_name: Timothy D full_name: Browning, Timothy D id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Efthymios full_name: Sofos, Efthymios last_name: Sofos citation: ama: Browning TD, Sofos E. Counting rational points on quartic del Pezzo surfaces with a rational conic. Mathematische Annalen. 2019;373(3-4):977-1016. doi:10.1007/s00208-018-1716-6 apa: Browning, T. D., & Sofos, E. (2019). Counting rational points on quartic del Pezzo surfaces with a rational conic. Mathematische Annalen. Springer Nature. https://doi.org/10.1007/s00208-018-1716-6 chicago: Browning, Timothy D, and Efthymios Sofos. “Counting Rational Points on Quartic Del Pezzo Surfaces with a Rational Conic.” Mathematische Annalen. Springer Nature, 2019. https://doi.org/10.1007/s00208-018-1716-6. ieee: T. D. Browning and E. Sofos, “Counting rational points on quartic del Pezzo surfaces with a rational conic,” Mathematische Annalen, vol. 373, no. 3–4. Springer Nature, pp. 977–1016, 2019. ista: Browning TD, Sofos E. 2019. Counting rational points on quartic del Pezzo surfaces with a rational conic. Mathematische Annalen. 373(3–4), 977–1016. mla: Browning, Timothy D., and Efthymios Sofos. “Counting Rational Points on Quartic Del Pezzo Surfaces with a Rational Conic.” Mathematische Annalen, vol. 373, no. 3–4, Springer Nature, 2019, pp. 977–1016, doi:10.1007/s00208-018-1716-6. short: T.D. Browning, E. Sofos, Mathematische Annalen 373 (2019) 977–1016. date_created: 2018-12-11T11:44:59Z date_published: 2019-04-01T00:00:00Z date_updated: 2021-01-12T06:52:37Z day: '01' ddc: - '510' doi: 10.1007/s00208-018-1716-6 extern: '1' external_id: arxiv: - '1609.09057' file: - access_level: open_access checksum: 4061dc2fe99bee25d9adf2d2018cf608 content_type: application/pdf creator: dernst date_created: 2019-05-23T07:53:27Z date_updated: 2020-07-14T12:45:12Z file_id: '6479' file_name: 2019_MathAnnalen_Browning.pdf file_size: 712847 relation: main_file file_date_updated: 2020-07-14T12:45:12Z has_accepted_license: '1' intvolume: ' 373' issue: 3-4 language: - iso: eng month: '04' oa: 1 oa_version: Published Version page: 977-1016 publication: Mathematische Annalen publication_status: published publisher: Springer Nature quality_controlled: '1' status: public title: Counting rational points on quartic del Pezzo surfaces with a rational conic tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 373 year: '2019' ... --- _id: '8228' abstract: - lang: eng text: "Background: Atopics have a lower risk for malignancies, and IgE targeted to tumors is superior to IgG in fighting cancer. Whether IgE-mediated innate or adaptive immune surveillance can confer protection against tumors remains unclear.\r\nObjective: We aimed to investigate the effects of active and passive immunotherapy to the tumor-associated antigen HER-2 in three murine models differing in Epsilon-B-cell-receptor expression affecting the levels of expressed IgE.\r\nMethods: We compared the levels of several serum specific anti-HER-2 antibodies (IgE, IgG1, IgG2a, IgG2b, IgA) and the survival rates in low-IgE ΔM1M2 mice lacking the transmembrane/cytoplasmic domain of Epsilon-B-cell-receptors expressing reduced IgE levels, high-IgE KN1 mice expressing chimeric Epsilon-Gamma1-B-cell receptors with 4-6-fold elevated serum IgE levels, and wild type (WT) BALB/c. Prior engrafting mice with D2F2/E2 mammary tumors overexpressing HER-2, mice were vaccinated with HER-2 or vehicle control PBS using the Th2-adjuvant Al(OH)3 (active immunotherapy), or treated with the murine anti-HER-2 IgG1 antibody 4D5 (passive immunotherapy).\r\nResults: Overall, among the three strains of mice, HER-2 vaccination induced significantly higher levels of HER-2 specific IgE and IgG1 in high-IgE KN1, while low-IgE ΔM1M2 mice had higher IgG2a levels. HER-2 vaccination and passive immunotherapy prolonged the survival in tumor-grafted WT and low-IgE ΔM1M2 strains compared with treatment controls; active vaccination provided the highest benefit. Notably, untreated high-IgE KN1 mice displayed the longest survival of all strains, which could not be further extended by active or passive immunotherapy.\r\nConclusion: Active and passive immunotherapies prolong survival in wild type and low-IgE ΔM1M2 mice engrafted with mammary tumors. High-IgE KN1 mice have an innate survival benefit following tumor challenge." article_number: '100044' article_processing_charge: No article_type: original author: - first_name: Josef full_name: Singer, Josef last_name: Singer orcid: 0000-0002-8701-2412 - first_name: Gertrude full_name: Achatz-Straussberger, Gertrude last_name: Achatz-Straussberger - first_name: Anna full_name: Bentley-Lukschal, Anna last_name: Bentley-Lukschal - first_name: Judit full_name: Fazekas-Singer, Judit id: 36432834-F248-11E8-B48F-1D18A9856A87 last_name: Fazekas-Singer orcid: 0000-0002-8777-3502 - first_name: Gernot full_name: Achatz, Gernot last_name: Achatz - first_name: Sophia N. full_name: Karagiannis, Sophia N. last_name: Karagiannis - first_name: Erika full_name: Jensen-Jarolim, Erika last_name: Jensen-Jarolim citation: ama: 'Singer J, Achatz-Straussberger G, Bentley-Lukschal A, et al. AllergoOncology: High innate IgE levels are decisive for the survival of cancer-bearing mice. World Allergy Organization Journal. 2019;12(7). doi:10.1016/j.waojou.2019.100044' apa: 'Singer, J., Achatz-Straussberger, G., Bentley-Lukschal, A., Singer, J., Achatz, G., Karagiannis, S. N., & Jensen-Jarolim, E. (2019). AllergoOncology: High innate IgE levels are decisive for the survival of cancer-bearing mice. World Allergy Organization Journal. Elsevier. https://doi.org/10.1016/j.waojou.2019.100044' chicago: 'Singer, Josef, Gertrude Achatz-Straussberger, Anna Bentley-Lukschal, Judit Singer, Gernot Achatz, Sophia N. Karagiannis, and Erika Jensen-Jarolim. “AllergoOncology: High Innate IgE Levels Are Decisive for the Survival of Cancer-Bearing Mice.” World Allergy Organization Journal. Elsevier, 2019. https://doi.org/10.1016/j.waojou.2019.100044.' ieee: 'J. Singer et al., “AllergoOncology: High innate IgE levels are decisive for the survival of cancer-bearing mice,” World Allergy Organization Journal, vol. 12, no. 7. Elsevier, 2019.' ista: 'Singer J, Achatz-Straussberger G, Bentley-Lukschal A, Singer J, Achatz G, Karagiannis SN, Jensen-Jarolim E. 2019. AllergoOncology: High innate IgE levels are decisive for the survival of cancer-bearing mice. World Allergy Organization Journal. 12(7), 100044.' mla: 'Singer, Josef, et al. “AllergoOncology: High Innate IgE Levels Are Decisive for the Survival of Cancer-Bearing Mice.” World Allergy Organization Journal, vol. 12, no. 7, 100044, Elsevier, 2019, doi:10.1016/j.waojou.2019.100044.' short: J. Singer, G. Achatz-Straussberger, A. Bentley-Lukschal, J. Singer, G. Achatz, S.N. Karagiannis, E. Jensen-Jarolim, World Allergy Organization Journal 12 (2019). date_created: 2020-08-10T11:50:54Z date_published: 2019-07-29T00:00:00Z date_updated: 2021-01-12T08:17:36Z day: '29' doi: 10.1016/j.waojou.2019.100044 extern: '1' intvolume: ' 12' issue: '7' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.waojou.2019.100044 month: '07' oa: 1 oa_version: Published Version publication: World Allergy Organization Journal publication_identifier: issn: - 1939-4551 publication_status: published publisher: Elsevier quality_controlled: '1' status: public title: 'AllergoOncology: High innate IgE levels are decisive for the survival of cancer-bearing mice' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 12 year: '2019' ... --- _id: '8263' abstract: - lang: eng text: "Background: The genus Streptococcus comprises pathogens that strongly influence the health of humans and animals. Genome sequencing of multiple Streptococcus strains demonstrated high variability in gene content and order even in closely related strains of the same species and created a newly emerged object for genomic analysis, the pan-genome. Here we analysed the genome evolution of 25 strains of Streptococcus suis, 50 strains of Streptococcus pyogenes and 28 strains of Streptococcus pneumoniae.\r\n\r\nResults: Fractions of the pan-genome, unique, periphery, and universal genes differ in size, functional composition, the level of nucleotide substitutions, and predisposition to horizontal gene transfer and genomic rearrangements. The density of substitutions in intergenic regions appears to be correlated with selection acting on adjacent genes, implying that more conserved genes tend to have more conserved regulatory regions.\r\nThe total pan-genome of the genus is open, but only due to strain-specific genes, whereas other pan-genome fractions reach saturation. We have identified the set of genes with phylogenies inconsistent with species and non-conserved location in the chromosome; these genes are rare in at least one species and have likely experienced recent horizontal transfer between species. The strain-specific fraction is enriched with mobile elements and hypothetical proteins, but also contains a number of candidate virulence-related genes, so it may have a strong impact on adaptability and pathogenicity.\r\nMapping the rearrangements to the phylogenetic tree revealed large parallel inversions in all species. A parallel inversion of length 15 kB with breakpoints formed by genes encoding surface antigen proteins PhtD and PhtB in S. pneumoniae leads to replacement of gene fragments that likely indicates the action of an antigen variation mechanism.\r\n\r\nConclusions: Members of genus Streptococcus have a highly dynamic, open pan-genome, that potentially confers them with the ability to adapt to changing environmental conditions, i.e. antibiotic resistance or transmission between different hosts. Hence, integrated analysis of all aspects of genome evolution is important for the identification of potential pathogens and design of drugs and vaccines." article_number: '83' article_processing_charge: No article_type: original author: - first_name: Pavel V. full_name: Shelyakin, Pavel V. last_name: Shelyakin orcid: 0000-0003-0120-9319 - first_name: Olga full_name: Bochkareva, Olga id: C4558D3C-6102-11E9-A62E-F418E6697425 last_name: Bochkareva orcid: 0000-0003-1006-6639 - first_name: Anna A. full_name: Karan, Anna A. last_name: Karan - first_name: Mikhail S. full_name: Gelfand, Mikhail S. last_name: Gelfand citation: ama: 'Shelyakin PV, Bochkareva O, Karan AA, Gelfand MS. Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow. BMC Evolutionary Biology. 2019;19. doi:10.1186/s12862-019-1403-6' apa: 'Shelyakin, P. V., Bochkareva, O., Karan, A. A., & Gelfand, M. S. (2019). Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow. BMC Evolutionary Biology. Springer Nature. https://doi.org/10.1186/s12862-019-1403-6' chicago: 'Shelyakin, Pavel V., Olga Bochkareva, Anna A. Karan, and Mikhail S. Gelfand. “Micro-Evolution of Three Streptococcus Species: Selection, Antigenic Variation, and Horizontal Gene Inflow.” BMC Evolutionary Biology. Springer Nature, 2019. https://doi.org/10.1186/s12862-019-1403-6.' ieee: 'P. V. Shelyakin, O. Bochkareva, A. A. Karan, and M. S. Gelfand, “Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow,” BMC Evolutionary Biology, vol. 19. Springer Nature, 2019.' ista: 'Shelyakin PV, Bochkareva O, Karan AA, Gelfand MS. 2019. Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow. BMC Evolutionary Biology. 19, 83.' mla: 'Shelyakin, Pavel V., et al. “Micro-Evolution of Three Streptococcus Species: Selection, Antigenic Variation, and Horizontal Gene Inflow.” BMC Evolutionary Biology, vol. 19, 83, Springer Nature, 2019, doi:10.1186/s12862-019-1403-6.' short: P.V. Shelyakin, O. Bochkareva, A.A. Karan, M.S. Gelfand, BMC Evolutionary Biology 19 (2019). date_created: 2020-08-15T11:04:07Z date_published: 2019-03-27T00:00:00Z date_updated: 2023-02-23T13:28:54Z day: '27' doi: 10.1186/s12862-019-1403-6 extern: '1' intvolume: ' 19' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1186/s12862-019-1403-6 month: '03' oa: 1 oa_version: Published Version publication: BMC Evolutionary Biology publication_identifier: issn: - 1471-2148 publication_status: published publisher: Springer Nature quality_controlled: '1' status: public title: 'Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 19 year: '2019' ...