---
_id: '3541'
abstract:
- lang: eng
  text: 'The contribution of the various hippocampal regions to the maintenance of
    epileptic activity, induced by stimulation of the perforant path or commissural
    system, was examined in the awake rat. Combination of multiple-site recordings
    with silicon probes, current source density analysis and unit recordings allowed
    for a high spatial resolution of the field events. Following perforant path stimulation,
    seizures began in the dentate gyrus, followed by events in the CA3-CA1 regions.
    After commissural stimulation, rhythmic bursts in the CA3-CA1 circuitry preceded
    the activation of the dentate gyrus. Correlation of events in the different subregions
    indicated that the sustained rhythmic afterdischarge (2-6 Hz) could not be explained
    by a cycle-by-cycle excitation of principal cell populations in the hippocampal-entorhinal
    loop. The primary afterdischarge always terminated in the CA1 region, followed
    by the dentate gyrus, CA3 region and the entorhinal cortex. The duration and pattern
    of the hippocampal afterdischarge was essentially unaffected by removal of the
    entorhinal cortex. The emergence of large population spike bursts coincided with
    a decreased discharge of interneurons in both CAI and hilar regions. The majority
    of hilar interneurons displayed a strong amplitude decrement prior to the onset
    of population spike phase of the afterdischarge. These findings suggest that (i)
    afterdischarges can independently arise in the CA3-CA1 and entorhinal-dentate
    gyrus circuitries, (ii) reverberation of excitation in the hippocampal-entorhinal
    loop is not critical for the maintenance of afterdischarges and (iii) decreased
    activity of the interneuronal network may release population bursting of principal
    cells. '
acknowledgement: We thank K. Wise and J. Hetke for providing us the silicon probes,
  J. J. Chrobak, S. L-W. Leung, G. G. Somjen and R. D. Traub for their comments on
  the manuscript. This work was supported by NINDS (NS34994; 1P41RR09754; NS33310)
  and the Whitehall Foundation. M. Penttonen was a visiting scholar at Rutgers University,
  supported by the Finnish Academy of Sciences and the A. I. Virtanen Institute.
article_processing_charge: No
article_type: original
author:
- first_name: Anatol
  full_name: Bragin, Anatol
  last_name: Bragin
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: Markku
  full_name: Penttonen, Markku
  last_name: Penttonen
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: 'Bragin A, Csicsvari JL, Penttonen M, Buzsáki G. Epileptic afterdischarge in
    the hippocampal-entorhinal system: Current source density and unit studies. <i>Neuroscience</i>.
    1997;76(4):1187-1203. doi:<a href="https://doi.org/10.1016/S0306-4522(96)00446-0">10.1016/S0306-4522(96)00446-0</a>'
  apa: 'Bragin, A., Csicsvari, J. L., Penttonen, M., &#38; Buzsáki, G. (1997). Epileptic
    afterdischarge in the hippocampal-entorhinal system: Current source density and
    unit studies. <i>Neuroscience</i>. Elsevier. <a href="https://doi.org/10.1016/S0306-4522(96)00446-0">https://doi.org/10.1016/S0306-4522(96)00446-0</a>'
  chicago: 'Bragin, Anatol, Jozsef L Csicsvari, Markku Penttonen, and György Buzsáki.
    “Epileptic Afterdischarge in the Hippocampal-Entorhinal System: Current Source
    Density and Unit Studies.” <i>Neuroscience</i>. Elsevier, 1997. <a href="https://doi.org/10.1016/S0306-4522(96)00446-0">https://doi.org/10.1016/S0306-4522(96)00446-0</a>.'
  ieee: 'A. Bragin, J. L. Csicsvari, M. Penttonen, and G. Buzsáki, “Epileptic afterdischarge
    in the hippocampal-entorhinal system: Current source density and unit studies,”
    <i>Neuroscience</i>, vol. 76, no. 4. Elsevier, pp. 1187–1203, 1997.'
  ista: 'Bragin A, Csicsvari JL, Penttonen M, Buzsáki G. 1997. Epileptic afterdischarge
    in the hippocampal-entorhinal system: Current source density and unit studies.
    Neuroscience. 76(4), 1187–1203.'
  mla: 'Bragin, Anatol, et al. “Epileptic Afterdischarge in the Hippocampal-Entorhinal
    System: Current Source Density and Unit Studies.” <i>Neuroscience</i>, vol. 76,
    no. 4, Elsevier, 1997, pp. 1187–203, doi:<a href="https://doi.org/10.1016/S0306-4522(96)00446-0">10.1016/S0306-4522(96)00446-0</a>.'
  short: A. Bragin, J.L. Csicsvari, M. Penttonen, G. Buzsáki, Neuroscience 76 (1997)
    1187–1203.
date_created: 2018-12-11T12:03:52Z
date_published: 1997-01-15T00:00:00Z
date_updated: 2022-08-19T11:53:06Z
day: '15'
doi: 10.1016/S0306-4522(96)00446-0
extern: '1'
external_id:
  pmid:
  - '9027878'
fulldoi: https://doi.org/10.1016/S0306-4522(96)00446-0
intvolume: '        76'
issue: '4'
language:
- iso: eng
month: '01'
oa_version: None
page: 1187 - 1203
pmid: 1
publication: Neuroscience
publication_identifier:
  issn:
  - 0306-4522
publication_status: published
publisher: Elsevier
publist_id: '2844'
quality_controlled: '1'
status: public
title: 'Epileptic afterdischarge in the hippocampal-entorhinal system: Current source
  density and unit studies'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 76
year: '1997'
...
---
_id: '4289'
abstract:
- lang: eng
  text: A worldwide survey of polymorphic molecular markers shows that the human population
    is genetically homogeneous, in close agreement with evidence from quite different
    genes and traits.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Barton NH. Population genetics: A new apportionment of human diversity. <i>Current
    Biology</i>. 1997;7(12):757-758. doi:<a href="https://doi.org/10.1016/S0960-9822(06)00397-6">10.1016/S0960-9822(06)00397-6</a>'
  apa: 'Barton, N. H. (1997). Population genetics: A new apportionment of human diversity.
    <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/S0960-9822(06)00397-6">https://doi.org/10.1016/S0960-9822(06)00397-6</a>'
  chicago: 'Barton, Nicholas H. “Population Genetics: A New Apportionment of Human
    Diversity.” <i>Current Biology</i>. Cell Press, 1997. <a href="https://doi.org/10.1016/S0960-9822(06)00397-6">https://doi.org/10.1016/S0960-9822(06)00397-6</a>.'
  ieee: 'N. H. Barton, “Population genetics: A new apportionment of human diversity,”
    <i>Current Biology</i>, vol. 7, no. 12. Cell Press, pp. 757–758, 1997.'
  ista: 'Barton NH. 1997. Population genetics: A new apportionment of human diversity.
    Current Biology. 7(12), 757–758.'
  mla: 'Barton, Nicholas H. “Population Genetics: A New Apportionment of Human Diversity.”
    <i>Current Biology</i>, vol. 7, no. 12, Cell Press, 1997, pp. 757–58, doi:<a href="https://doi.org/10.1016/S0960-9822(06)00397-6">10.1016/S0960-9822(06)00397-6</a>.'
  short: N.H. Barton, Current Biology 7 (1997) 757–758.
date_created: 2018-12-11T12:08:04Z
date_published: 1997-12-01T00:00:00Z
date_updated: 2022-08-17T13:07:08Z
day: '01'
doi: 10.1016/S0960-9822(06)00397-6
extern: '1'
fulldoi: https://doi.org/10.1016/S0960-9822(06)00397-6
intvolume: '         7'
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.sciencedirect.com/science/article/pii/S0960982206003976?via%3Dihub
month: '12'
oa: 1
oa_version: Published Version
page: 757 - 758
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Cell Press
publist_id: '1788'
quality_controlled: '1'
status: public
title: 'Population genetics: A new apportionment of human diversity'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 7
year: '1997'
...
---
OA_place: repository
OA_type: green
_id: '17828'
abstract:
- lang: eng
  text: We quantify the consequences of intergalactic dust produced by the first Type
    II supernovae in the universe. The fraction of gas converted into stars is calibrated
    based on the observed C/H ratio in the intergalactic medium at z = 3, assuming
    a Scalo mass function for the stars. The associated dust absorbs starlight energy
    and emits it at longer wavelengths. For a uniform mix of metals and dust with
    the intergalactic gas, we find that the dust distorts the microwave background
    spectrum by a y-parameter in the range (0.06-6) × 10-5 (MSN/0.3 M☉), where MSN
    is the average mass of dust produced per supernova. The opacity of intergalactic
    dust to infrared sources at redshifts of z ≳ 10 is significant, τdust = (0.1-1)
    × (MSN/0.3 M☉), and could be detected with the Next Generation Space Telescope.
    Although dust suppresses the Lyα emission from early sources, the redshifts of
    star clusters at z = 10-35 can be easily inferred from the Lyman limit break in
    their infrared spectrum between 1 and 3.5 μm.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Abraham
  full_name: Loeb, Abraham
  last_name: Loeb
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
citation:
  ama: Loeb A, Haiman Z. Signatures of intergalactic dust from the first supernovae.
    <i>The Astrophysical Journal</i>. 1997;490(2):571-576. doi:<a href="https://doi.org/10.1086/304919">10.1086/304919</a>
  apa: Loeb, A., &#38; Haiman, Z. (1997). Signatures of intergalactic dust from the
    first supernovae. <i>The Astrophysical Journal</i>. American Astronomical Society.
    <a href="https://doi.org/10.1086/304919">https://doi.org/10.1086/304919</a>
  chicago: Loeb, Abraham, and Zoltán Haiman. “Signatures of Intergalactic Dust from
    the First Supernovae.” <i>The Astrophysical Journal</i>. American Astronomical
    Society, 1997. <a href="https://doi.org/10.1086/304919">https://doi.org/10.1086/304919</a>.
  ieee: A. Loeb and Z. Haiman, “Signatures of intergalactic dust from the first supernovae,”
    <i>The Astrophysical Journal</i>, vol. 490, no. 2. American Astronomical Society,
    pp. 571–576, 1997.
  ista: Loeb A, Haiman Z. 1997. Signatures of intergalactic dust from the first supernovae.
    The Astrophysical Journal. 490(2), 571–576.
  mla: Loeb, Abraham, and Zoltán Haiman. “Signatures of Intergalactic Dust from the
    First Supernovae.” <i>The Astrophysical Journal</i>, vol. 490, no. 2, American
    Astronomical Society, 1997, pp. 571–76, doi:<a href="https://doi.org/10.1086/304919">10.1086/304919</a>.
  short: A. Loeb, Z. Haiman, The Astrophysical Journal 490 (1997) 571–576.
date_created: 2024-09-06T12:08:42Z
date_published: 1997-12-01T00:00:00Z
date_updated: 2024-11-13T07:14:38Z
day: '01'
doi: 10.1086/304919
extern: '1'
external_id:
  arxiv:
  - astro-ph/9704133
fulldoi: https://doi.org/10.1086/304919
intvolume: '       490'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.astro-ph/9704133
month: '12'
oa: 1
oa_version: Preprint
page: 571-576
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Signatures of intergalactic dust from the first supernovae
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 490
year: '1997'
...
---
_id: '2562'
abstract:
- lang: eng
  text: A monoclonal antibody against a metabotropic glutamate receptor, mGluR2, was
    produced by using a glutathione S-transferase (GST) fusion protein containing
    an N-terminal sequence of rat mGluR2. Intense mGluR2-like immunoreactivity (mGluR2-LI)
    was seen mainly in neuropil of the cerebral cortical regions, hippocampus, olfactory
    bulb, some diencephalic nuclei, dorsal cochlear nucleus and cerebellar cortex.
    In the cerebellar cortex, mGluR2-LI was seen only in Golgi cells. In Ammon's hem,
    mGluR2-LI was marked in the stratum lucidum of CA3 and the stratum lacunosum-moleculare
    of CA1-CA3, but not detected in the stratum pyramidale. The results indicate that
    mGluR2 is located not only presynaptically but also postsynaptically.
acknowledgement: We are grateful to Mr. Akira Uesugi for photographic help.
article_processing_charge: No
article_type: original
author:
- first_name: Akio
  full_name: Neki, Akio
  last_name: Neki
- first_name: Hitoshi
  full_name: Ohishi, Hitoshi
  last_name: Ohishi
- first_name: Takeshi
  full_name: Kaneko, Takeshi
  last_name: Kaneko
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Shigetada
  full_name: Nakanishi, Shigetada
  last_name: Nakanishi
- first_name: Noboru
  full_name: Mizuno, Noboru
  last_name: Mizuno
citation:
  ama: 'Neki A, Ohishi H, Kaneko T, Shigemoto R, Nakanishi S, Mizuno N. Pre- and postsynaptic
    localization of a metabotropic glutamate receptor, mGluR2, in the rat brain: An
    immunohistochemical study with a monoclonal antibody. <i>Neuroscience Letters</i>.
    1996;202(3):197-200. doi:<a href="https://doi.org/10.1016/0304-3940(95)12248-6">10.1016/0304-3940(95)12248-6</a>'
  apa: 'Neki, A., Ohishi, H., Kaneko, T., Shigemoto, R., Nakanishi, S., &#38; Mizuno,
    N. (1996). Pre- and postsynaptic localization of a metabotropic glutamate receptor,
    mGluR2, in the rat brain: An immunohistochemical study with a monoclonal antibody.
    <i>Neuroscience Letters</i>. Elsevier. <a href="https://doi.org/10.1016/0304-3940(95)12248-6">https://doi.org/10.1016/0304-3940(95)12248-6</a>'
  chicago: 'Neki, Akio, Hitoshi Ohishi, Takeshi Kaneko, Ryuichi Shigemoto, Shigetada
    Nakanishi, and Noboru Mizuno. “Pre- and Postsynaptic Localization of a Metabotropic
    Glutamate Receptor, MGluR2, in the Rat Brain: An Immunohistochemical Study with
    a Monoclonal Antibody.” <i>Neuroscience Letters</i>. Elsevier, 1996. <a href="https://doi.org/10.1016/0304-3940(95)12248-6">https://doi.org/10.1016/0304-3940(95)12248-6</a>.'
  ieee: 'A. Neki, H. Ohishi, T. Kaneko, R. Shigemoto, S. Nakanishi, and N. Mizuno,
    “Pre- and postsynaptic localization of a metabotropic glutamate receptor, mGluR2,
    in the rat brain: An immunohistochemical study with a monoclonal antibody,” <i>Neuroscience
    Letters</i>, vol. 202, no. 3. Elsevier, pp. 197–200, 1996.'
  ista: 'Neki A, Ohishi H, Kaneko T, Shigemoto R, Nakanishi S, Mizuno N. 1996. Pre-
    and postsynaptic localization of a metabotropic glutamate receptor, mGluR2, in
    the rat brain: An immunohistochemical study with a monoclonal antibody. Neuroscience
    Letters. 202(3), 197–200.'
  mla: 'Neki, Akio, et al. “Pre- and Postsynaptic Localization of a Metabotropic Glutamate
    Receptor, MGluR2, in the Rat Brain: An Immunohistochemical Study with a Monoclonal
    Antibody.” <i>Neuroscience Letters</i>, vol. 202, no. 3, Elsevier, 1996, pp. 197–200,
    doi:<a href="https://doi.org/10.1016/0304-3940(95)12248-6">10.1016/0304-3940(95)12248-6</a>.'
  short: A. Neki, H. Ohishi, T. Kaneko, R. Shigemoto, S. Nakanishi, N. Mizuno, Neuroscience
    Letters 202 (1996) 197–200.
date_created: 2018-12-11T11:58:24Z
date_published: 1996-01-05T00:00:00Z
date_updated: 2022-08-12T12:04:18Z
day: '05'
doi: 10.1016/0304-3940(95)12248-6
extern: '1'
external_id:
  pmid:
  - '8848265'
fulldoi: https://doi.org/10.1016/0304-3940(95)12248-6
intvolume: '       202'
issue: '3'
language:
- iso: eng
month: '01'
oa_version: None
page: 197 - 200
pmid: 1
publication: Neuroscience Letters
publication_identifier:
  issn:
  - 0304-3940
publication_status: published
publisher: Elsevier
publist_id: '4335'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Pre- and postsynaptic localization of a metabotropic glutamate receptor, mGluR2,
  in the rat brain: An immunohistochemical study with a monoclonal antibody'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 202
year: '1996'
...
---
_id: '2573'
abstract:
- lang: eng
  text: Developmental changes of the distribution pattern of substance P receptor
    (SPR) were investigated immunohistochemically in the rat striatum. The SPR immunoreactivity
    in the striatum first emerged at postnatal day 1 and transiently showed a patchy
    pattern of distribution until it displayed the adult pattern of homogeneous distribution
    by the end of the third postnatal week. The SPR-immunoreactive patches were most
    marked in the medial and dorsolateral parts of the striatum, as well as in the
    subcallosal streak. They matched tyrosine hydroxylase-enriched areas and, conversely,
    avoided calbindin-enriched zones. No neurons within the SPR-immunoreactive patches
    contained either choline acetyltransferase or somatostatin, which is known to
    be contained in intrinsic neurons in the striatum. The vast majority of SPR-immunoreactive
    patch neurons also contained DARPP-32, a phosphoprotein that is expressed in striatal
    projection neurons with D1 dopamine receptor. The results indicate that SPR-immunoreactive
    patches which appear transiently in the developing striatum are in register with
    the striatal patch compartment, and that SPR immunoreactivity within these patches
    may be expressed on projection neurons rather than intrinsic neurons. Such SPR
    immunoreactivity in projection neurons in striatal patches may fade out in adulthood.
acknowledgement: "We thank Mr. Akira Uesugi and Ms. Miao-Li Zhang for their photographic
  help. We are also grateful for the support of Dr. Kajitaro Morita in the Morita
  Clinic of Internal Medicine and Pediatrics at Kadoma, Osaka, Japan, and for the
  support of Drs. Satoru Fukuchi, Ritsu Hayashi, Sozaburo Hayashi, Mizuho Katsurada,
  Yutaka Kitani, Keiko Kumagai, Toshihiko Kuroda., Hiroshi Matsubara, Hiroshi Matsushita,
  Chisato Minakuchi, Gonpei Niwa, Hajime Oda, Masahiko Ohbayashi, Sei-ichi Ohbayashi,
  Hiroyasu Ohtsuka, Shigeo Tamaki, Eizo Watanabe, Kazuo Yoshino, and Toshiaki Yoshino.
  This work was supported in part by Grants-in-Aid for Special Research on Priority
  Areas 05267104, Scientific Research (B) \r\n5454658, and Scientific Research (C)
  05680658 and 06680735 from the Ministry of Education, Science and Culture of Japan."
article_processing_charge: No
article_type: original
author:
- first_name: Hironobu
  full_name: Tokuno, Hironobu
  last_name: Tokuno
- first_name: Masahiko
  full_name: Takada, Masahiko
  last_name: Takada
- first_name: Takeshi
  full_name: Kaneko, Takeshi
  last_name: Kaneko
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Noboru
  full_name: Mizuno, Noboru
  last_name: Mizuno
citation:
  ama: Tokuno H, Takada M, Kaneko T, Shigemoto R, Mizuno N. Patchy distribution of
    substance P receptor immunoreactivity in the developing rat striatum. <i>Developmental
    Brain Research</i>. 1996;95(1):107-117. doi:<a href="https://doi.org/10.1016/0165-3806(96)00080-6">10.1016/0165-3806(96)00080-6</a>
  apa: Tokuno, H., Takada, M., Kaneko, T., Shigemoto, R., &#38; Mizuno, N. (1996).
    Patchy distribution of substance P receptor immunoreactivity in the developing
    rat striatum. <i>Developmental Brain Research</i>. Elsevier. <a href="https://doi.org/10.1016/0165-3806(96)00080-6">https://doi.org/10.1016/0165-3806(96)00080-6</a>
  chicago: Tokuno, Hironobu, Masahiko Takada, Takeshi Kaneko, Ryuichi Shigemoto, and
    Noboru Mizuno. “Patchy Distribution of Substance P Receptor Immunoreactivity in
    the Developing Rat Striatum.” <i>Developmental Brain Research</i>. Elsevier, 1996.
    <a href="https://doi.org/10.1016/0165-3806(96)00080-6">https://doi.org/10.1016/0165-3806(96)00080-6</a>.
  ieee: H. Tokuno, M. Takada, T. Kaneko, R. Shigemoto, and N. Mizuno, “Patchy distribution
    of substance P receptor immunoreactivity in the developing rat striatum,” <i>Developmental
    Brain Research</i>, vol. 95, no. 1. Elsevier, pp. 107–117, 1996.
  ista: Tokuno H, Takada M, Kaneko T, Shigemoto R, Mizuno N. 1996. Patchy distribution
    of substance P receptor immunoreactivity in the developing rat striatum. Developmental
    Brain Research. 95(1), 107–117.
  mla: Tokuno, Hironobu, et al. “Patchy Distribution of Substance P Receptor Immunoreactivity
    in the Developing Rat Striatum.” <i>Developmental Brain Research</i>, vol. 95,
    no. 1, Elsevier, 1996, pp. 107–17, doi:<a href="https://doi.org/10.1016/0165-3806(96)00080-6">10.1016/0165-3806(96)00080-6</a>.
  short: H. Tokuno, M. Takada, T. Kaneko, R. Shigemoto, N. Mizuno, Developmental Brain
    Research 95 (1996) 107–117.
date_created: 2018-12-11T11:58:28Z
date_published: 1996-08-20T00:00:00Z
date_updated: 2022-08-11T12:07:34Z
day: '20'
doi: 10.1016/0165-3806(96)00080-6
extern: '1'
external_id:
  pmid:
  - '8873981 '
fulldoi: https://doi.org/10.1016/0165-3806(96)00080-6
intvolume: '        95'
issue: '1'
language:
- iso: eng
month: '08'
oa_version: None
page: 107 - 117
pmid: 1
publication: Developmental Brain Research
publication_identifier:
  issn:
  - 0165-3806
publication_status: published
publisher: Elsevier
publist_id: '4325'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Patchy distribution of substance P receptor immunoreactivity in the developing
  rat striatum
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 95
year: '1996'
...
---
_id: '4025'
abstract:
- lang: eng
  text: Questions of chemical reactivity can often be cast as questions of molecular
    geometry. Common geometric models for proteins and other molecules are the space-filling
    diagram, the solvent accessible surface and the molecular surface. In this paper
    we present a new approach to triangulating the surface of a molecule under the
    three models, which is fast, robust, and results in topologically correct triangulations.
    Our computations are based on a simplicial complex dual to the molecule models.
    All proposed algorithms are parallelizable.
acknowledgement: 'The research of both authors is partially supported by the Office
  of Naval Research. Herbert Edelsbrunner is also supported through the Alan T. Waterman
  award, grant CCR-9118874. '
article_processing_charge: No
article_type: original
author:
- first_name: Nataraj
  full_name: Akkiraju, Nataraj
  last_name: Akkiraju
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: Akkiraju N, Edelsbrunner H. Triangulating the surface of a molecule. <i>Discrete
    Applied Mathematics</i>. 1996;71(1-3):5-22. doi:<a href="https://doi.org/10.1016/S0166-218X(96)00054-6">10.1016/S0166-218X(96)00054-6</a>
  apa: Akkiraju, N., &#38; Edelsbrunner, H. (1996). Triangulating the surface of a
    molecule. <i>Discrete Applied Mathematics</i>. Elsevier. <a href="https://doi.org/10.1016/S0166-218X(96)00054-6">https://doi.org/10.1016/S0166-218X(96)00054-6</a>
  chicago: Akkiraju, Nataraj, and Herbert Edelsbrunner. “Triangulating the Surface
    of a Molecule.” <i>Discrete Applied Mathematics</i>. Elsevier, 1996. <a href="https://doi.org/10.1016/S0166-218X(96)00054-6">https://doi.org/10.1016/S0166-218X(96)00054-6</a>.
  ieee: N. Akkiraju and H. Edelsbrunner, “Triangulating the surface of a molecule,”
    <i>Discrete Applied Mathematics</i>, vol. 71, no. 1–3. Elsevier, pp. 5–22, 1996.
  ista: Akkiraju N, Edelsbrunner H. 1996. Triangulating the surface of a molecule.
    Discrete Applied Mathematics. 71(1–3), 5–22.
  mla: Akkiraju, Nataraj, and Herbert Edelsbrunner. “Triangulating the Surface of
    a Molecule.” <i>Discrete Applied Mathematics</i>, vol. 71, no. 1–3, Elsevier,
    1996, pp. 5–22, doi:<a href="https://doi.org/10.1016/S0166-218X(96)00054-6">10.1016/S0166-218X(96)00054-6</a>.
  short: N. Akkiraju, H. Edelsbrunner, Discrete Applied Mathematics 71 (1996) 5–22.
date_created: 2018-12-11T12:06:30Z
date_published: 1996-12-05T00:00:00Z
date_updated: 2022-08-09T14:06:12Z
day: '05'
doi: 10.1016/S0166-218X(96)00054-6
extern: '1'
fulldoi: https://doi.org/10.1016/S0166-218X(96)00054-6
intvolume: '        71'
issue: 1-3
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.sciencedirect.com/science/article/pii/S0166218X96000546?via%3Dihub
month: '12'
oa: 1
oa_version: Published Version
page: 5 - 22
publication: Discrete Applied Mathematics
publication_identifier:
  issn:
  - 0166-218X
publication_status: published
publisher: Elsevier
publist_id: '2102'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Triangulating the surface of a molecule
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 71
year: '1996'
...
---
_id: '4151'
abstract:
- lang: eng
  text: 'Jaws and branchial arches together are a basic, segmented feature of the
    vertebrate head, Seven arches develop in the zebrafish embryo (Danio rerio), derived
    largely from neural crest cells that form the cartilaginous skeleton, In this
    and the following paper we describe the phenotypes of 109 arch mutants, focusing
    here on three classes that affect the posterior pharyngeal arches, including the
    hyoid and five gill-bearing arches, In lockjaw, the hyoid arch is strongly reduced
    and subsets of branchial arches do not develop, Mutants of a large second class,
    designated the flathead group, lack several adjacent branchial arches and their
    associated cartilages. Five alleles at the flathead locus all lead to larvae that
    lack arches 4-6, Among 34 other flathead group members complementation tests are
    incomplete, but at least six unique phenotypes can be distinguished, These all
    delete continuous stretches of adjacent branchial arches and unpaired cartilages
    in the ventral midline, Many show cell death in the midbrain, from which some
    neural crest precursors of the arches originate, lockjaw and a few mutants in
    the flathead group, including pistachio, affect both jaw cartilage and pigmentation,
    reflecting essential functions of these genes in at least two neural crest lineages,
    Mutants of a third class, including boxer, dackel and pincher, affect pectoral
    fins and axonal trajectories in the brain, as well as the arches. Their skeletal
    phenotypes suggest that they disrupt cartilage morphogenesis in all arches, Our
    results suggest that there are sets of genes that: (1) specify neural crest cells
    in groups of adjacent head segments, and (2) function in common genetic pathways
    in a variety of tissues including the brain, pectoral fins and pigment cells as
    well as pharyngeal arches.'
acknowledgement: We thank Drs Charles Kimmel, Philip Ingham, Paula Mabee and members
  of the Ingham lab for critical comments on the manuscript.
article_processing_charge: No
article_type: original
author:
- first_name: Thomas
  full_name: Schilling, Thomas
  last_name: Schilling
- first_name: Tatjana
  full_name: Piotrowski, Tatjana
  last_name: Piotrowski
- first_name: Heiner
  full_name: Grandel, Heiner
  last_name: Grandel
- first_name: Michael
  full_name: Brand, Michael
  last_name: Brand
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: Yunjin
  full_name: Jiang, Yunjin
  last_name: Jiang
- first_name: Dirk
  full_name: Beuchle, Dirk
  last_name: Beuchle
- first_name: Matthias
  full_name: Hammerschmidt, Matthias
  last_name: Hammerschmidt
- first_name: Donald
  full_name: Kane, Donald
  last_name: Kane
- first_name: Mary
  full_name: Mullins, Mary
  last_name: Mullins
- first_name: Fredericus
  full_name: Van Eeden, Fredericus
  last_name: Van Eeden
- first_name: Robert
  full_name: Kelsh, Robert
  last_name: Kelsh
- first_name: Makoto
  full_name: Furutani Seiki, Makoto
  last_name: Furutani Seiki
- first_name: Michael
  full_name: Granato, Michael
  last_name: Granato
- first_name: Pascal
  full_name: Haffter, Pascal
  last_name: Haffter
- first_name: Jörg
  full_name: Odenthal, Jörg
  last_name: Odenthal
- first_name: Rachel
  full_name: Warga, Rachel
  last_name: Warga
- first_name: Torsten
  full_name: Trowe, Torsten
  last_name: Trowe
- first_name: Christiane
  full_name: Nüsslein Volhard, Christiane
  last_name: Nüsslein Volhard
citation:
  ama: 'Schilling T, Piotrowski T, Grandel H, et al. Jaw and branchial arch mutants
    in zebrafish I: Branchial arches. <i>Development</i>. 1996;123(1):329-344. doi:<a
    href="https://doi.org/10.1242/dev.123.1.329">10.1242/dev.123.1.329</a>'
  apa: 'Schilling, T., Piotrowski, T., Grandel, H., Brand, M., Heisenberg, C.-P. J.,
    Jiang, Y., … Nüsslein Volhard, C. (1996). Jaw and branchial arch mutants in zebrafish
    I: Branchial arches. <i>Development</i>. Company of Biologists. <a href="https://doi.org/10.1242/dev.123.1.329">https://doi.org/10.1242/dev.123.1.329</a>'
  chicago: 'Schilling, Thomas, Tatjana Piotrowski, Heiner Grandel, Michael Brand,
    Carl-Philipp J Heisenberg, Yunjin Jiang, Dirk Beuchle, et al. “Jaw and Branchial
    Arch Mutants in Zebrafish I: Branchial Arches.” <i>Development</i>. Company of
    Biologists, 1996. <a href="https://doi.org/10.1242/dev.123.1.329">https://doi.org/10.1242/dev.123.1.329</a>.'
  ieee: 'T. Schilling <i>et al.</i>, “Jaw and branchial arch mutants in zebrafish
    I: Branchial arches,” <i>Development</i>, vol. 123, no. 1. Company of Biologists,
    pp. 329–344, 1996.'
  ista: 'Schilling T, Piotrowski T, Grandel H, Brand M, Heisenberg C-PJ, Jiang Y,
    Beuchle D, Hammerschmidt M, Kane D, Mullins M, Van Eeden F, Kelsh R, Furutani
    Seiki M, Granato M, Haffter P, Odenthal J, Warga R, Trowe T, Nüsslein Volhard
    C. 1996. Jaw and branchial arch mutants in zebrafish I: Branchial arches. Development.
    123(1), 329–344.'
  mla: 'Schilling, Thomas, et al. “Jaw and Branchial Arch Mutants in Zebrafish I:
    Branchial Arches.” <i>Development</i>, vol. 123, no. 1, Company of Biologists,
    1996, pp. 329–44, doi:<a href="https://doi.org/10.1242/dev.123.1.329">10.1242/dev.123.1.329</a>.'
  short: T. Schilling, T. Piotrowski, H. Grandel, M. Brand, C.-P.J. Heisenberg, Y.
    Jiang, D. Beuchle, M. Hammerschmidt, D. Kane, M. Mullins, F. Van Eeden, R. Kelsh,
    M. Furutani Seiki, M. Granato, P. Haffter, J. Odenthal, R. Warga, T. Trowe, C.
    Nüsslein Volhard, Development 123 (1996) 329–344.
date_created: 2018-12-11T12:07:15Z
date_published: 1996-12-01T00:00:00Z
date_updated: 2022-08-08T08:41:00Z
day: '01'
doi: 10.1242/dev.123.1.329
extern: '1'
external_id:
  pmid:
  - '9007253'
fulldoi: https://doi.org/10.1242/dev.123.1.329
intvolume: '       123'
issue: '1'
language:
- iso: eng
month: '12'
oa_version: None
page: 329 - 344
pmid: 1
publication: Development
publication_identifier:
  issn:
  - 0950-1991
publication_status: published
publisher: Company of Biologists
publist_id: '1968'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Jaw and branchial arch mutants in zebrafish I: Branchial arches'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 123
year: '1996'
...
---
_id: '4170'
abstract:
- lang: eng
  text: We identified 6 genes that are essential for specifying ventral regions of
    the early zebrafish embryo, Mutations in these genes cause an expansion of structures
    normally derived from dorsal-lateral regions of the blastula at the expense of
    ventrally derived structures, A series of phenotypes of varied strengths is observed
    with different alleles of these mutants, The weakest phenotype is a reduction
    in the ventral tail fin, observed as a dominant phenotype of swirl, piggytail,
    and somitabun and a recessive phenotype of min fin, lost-a-fin and some piggytail
    alleles, With increasing phenotypic strength, the blood and pronephric anlagen
    are also reduced or absent, while the paraxial mesoderm and anterior neuroectoderm
    is progressively expanded, In the strong phenotypes, displayed by homozygous embryos
    of snailhouse, swirl and somitabun, the somites circle around the embryo and the
    midbrain region is expanded laterally, Several mutations in this group of genes
    are semidominant as well as recessive indicating a strong dosage sensitivity of
    the processes involved, Mutations in the piggytail gene display an unusual dominance
    that depends on both a maternal and zygotic heterozygous genotype, while somitabun
    is a fully penetrant dominant maternal-effect mutation, The similar and overlapping
    phenotypes of mutants of the 6 genes identified suggest that they function in
    a common pathway, which begins in oogenesis, but also depends on factors provided
    after the onset of zygotic transcription, presumably during blastula stages, This
    pathway provides ventral positional information, counteracting the dorsalizing
    instructions of the organizer, which is localized in the dorsal shield.
acknowledgement: 'We would like to thank: Eric Weinberg, and David Ransom and Leonard
  Zon for providing the myoD and gata1 cDNA clone, respectively, prior to publication;
  David Ransom for pointing out the histological blood staining method; J. S. Joly
  for the eve1 cDNA clone; Mary Ellen Lane, Siegfried Roth, Stefan Schulte-Merker,
  Herbert Steinbeiser for helpful comments on the manuscript; and very special thanks
  to Karin Finger-Miller for technical support, as well as to Hans-Martin Maischein,
  Amanda Wilson, Jörg Zeller, and Cosima Fabian. This work was supported by an NIH
  postdoctoral fellowship to M. C. M.'
article_processing_charge: No
article_type: original
author:
- first_name: Mary
  full_name: Mullins, Mary
  last_name: Mullins
- first_name: Matthias
  full_name: Hammerschmidt, Matthias
  last_name: Hammerschmidt
- first_name: Donald
  full_name: Kane, Donald
  last_name: Kane
- first_name: Jörg
  full_name: Odenthal, Jörg
  last_name: Odenthal
- first_name: Michael
  full_name: Brand, Michael
  last_name: Brand
- first_name: Fredericus
  full_name: Van Eeden, Fredericus
  last_name: Van Eeden
- first_name: Makoto
  full_name: Furutani Seiki, Makoto
  last_name: Furutani Seiki
- first_name: Michael
  full_name: Granato, Michael
  last_name: Granato
- first_name: Pascal
  full_name: Haffter, Pascal
  last_name: Haffter
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: Yunjin
  full_name: Jiang, Yunjin
  last_name: Jiang
- first_name: Robert
  full_name: Kelsh, Robert
  last_name: Kelsh
- first_name: Christiane
  full_name: Nüsslein Volhard, Christiane
  last_name: Nüsslein Volhard
citation:
  ama: 'Mullins M, Hammerschmidt M, Kane D, et al. Genes establishing dorsoventral
    pattern formation in the zebrafish embryo: The ventral specifying genes. <i>Development</i>.
    1996;123(1):81-93. doi:<a href="https://doi.org/10.1242/dev.123.1.81">10.1242/dev.123.1.81</a>'
  apa: 'Mullins, M., Hammerschmidt, M., Kane, D., Odenthal, J., Brand, M., Van Eeden,
    F., … Nüsslein Volhard, C. (1996). Genes establishing dorsoventral pattern formation
    in the zebrafish embryo: The ventral specifying genes. <i>Development</i>. Company
    of Biologists. <a href="https://doi.org/10.1242/dev.123.1.81">https://doi.org/10.1242/dev.123.1.81</a>'
  chicago: 'Mullins, Mary, Matthias Hammerschmidt, Donald Kane, Jörg Odenthal, Michael
    Brand, Fredericus Van Eeden, Makoto Furutani Seiki, et al. “Genes Establishing
    Dorsoventral Pattern Formation in the Zebrafish Embryo: The Ventral Specifying
    Genes.” <i>Development</i>. Company of Biologists, 1996. <a href="https://doi.org/10.1242/dev.123.1.81">https://doi.org/10.1242/dev.123.1.81</a>.'
  ieee: 'M. Mullins <i>et al.</i>, “Genes establishing dorsoventral pattern formation
    in the zebrafish embryo: The ventral specifying genes,” <i>Development</i>, vol.
    123, no. 1. Company of Biologists, pp. 81–93, 1996.'
  ista: 'Mullins M, Hammerschmidt M, Kane D, Odenthal J, Brand M, Van Eeden F, Furutani
    Seiki M, Granato M, Haffter P, Heisenberg C-PJ, Jiang Y, Kelsh R, Nüsslein Volhard
    C. 1996. Genes establishing dorsoventral pattern formation in the zebrafish embryo:
    The ventral specifying genes. Development. 123(1), 81–93.'
  mla: 'Mullins, Mary, et al. “Genes Establishing Dorsoventral Pattern Formation in
    the Zebrafish Embryo: The Ventral Specifying Genes.” <i>Development</i>, vol.
    123, no. 1, Company of Biologists, 1996, pp. 81–93, doi:<a href="https://doi.org/10.1242/dev.123.1.81">10.1242/dev.123.1.81</a>.'
  short: M. Mullins, M. Hammerschmidt, D. Kane, J. Odenthal, M. Brand, F. Van Eeden,
    M. Furutani Seiki, M. Granato, P. Haffter, C.-P.J. Heisenberg, Y. Jiang, R. Kelsh,
    C. Nüsslein Volhard, Development 123 (1996) 81–93.
date_created: 2018-12-11T12:07:22Z
date_published: 1996-12-01T00:00:00Z
date_updated: 2022-08-05T12:01:06Z
day: '01'
doi: 10.1242/dev.123.1.81
extern: '1'
external_id:
  pmid:
  - '9007231'
fulldoi: https://doi.org/10.1242/dev.123.1.81
intvolume: '       123'
issue: '1'
language:
- iso: eng
month: '12'
oa_version: None
page: 81 - 93
pmid: 1
publication: Development
publication_identifier:
  issn:
  - 0950-1991
publication_status: published
publisher: Company of Biologists
publist_id: '1951'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Genes establishing dorsoventral pattern formation in the zebrafish embryo:
  The ventral specifying genes'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 123
year: '1996'
...
---
_id: '4189'
abstract:
- lang: eng
  text: 'This report describes mutants of the zebrafish having phenotypes causing
    a general arrest in early morphogenesis. These mutants identify a group of loci
    making up about 20% of the loci identified by mutants with visible morphological
    phenotypes within the first day of development. There are 12 Class I mutants,
    which fall into 5 complementation groups and have cells that lyse before morphological
    defects are observed. Mutants at three loci, speed bump, ogre and zombie, display
    abnormal nuclei. The 8 Class II mutants, which fall into 6 complementation groups,
    arrest development before cell lysis is observed. These mutants seemingly stop
    development in the late segmentation stages, and maintain a body shape similar
    to a 20 hour embryo. Mutations in speed bump, ogre, zombie, specter, poltergeist
    and troll were tested for cell lethality by transplanting mutant cells into wild-type
    hosts. With poltergeist, transplanted mutant cells all survive. The remainder
    of the mutants tested were autonomously but conditionally lethal: mutant cells,
    most of which lyse, sometimes survive to become notochord, muscles, or, in rare
    cases, large neurons, all cell types which become postmitotic in the gastrula.
    Some of the genes of the early arrest group may be necessary for progression though
    the cell cycle; if so, the survival of early differentiating cells may be based
    on having their terminal mitosis before the zygotic requirement for these genes.'
acknowledgement: We thank Dr Adam Felsenfeld for his careful comments on earlier drafts
  of this manuscript, D. A. K. also thanks the two anonymous referees who patiently
  pointed out a number of ‘speed bumps’ in the first submitted draft of this manuscript.
  This work was supported in part by a grant from the National Institutes of Health
  to D. A. K.
article_processing_charge: No
article_type: original
author:
- first_name: Donald
  full_name: Kane, Donald
  last_name: Kane
- first_name: Hans
  full_name: Maischein, Hans
  last_name: Maischein
- first_name: Michael
  full_name: Brand, Michael
  last_name: Brand
- first_name: Fredericus
  full_name: Van Eeden, Fredericus
  last_name: Van Eeden
- first_name: Makoto
  full_name: Furutani Seiki, Makoto
  last_name: Furutani Seiki
- first_name: Michael
  full_name: Granato, Michael
  last_name: Granato
- first_name: Pascal
  full_name: Haffter, Pascal
  last_name: Haffter
- first_name: Matthias
  full_name: Hammerschmidt, Matthias
  last_name: Hammerschmidt
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: Yunjin
  full_name: Jiang, Yunjin
  last_name: Jiang
- first_name: Robert
  full_name: Kelsh, Robert
  last_name: Kelsh
- first_name: Mary
  full_name: Mullins, Mary
  last_name: Mullins
- first_name: Jörg
  full_name: Odenthal, Jörg
  last_name: Odenthal
- first_name: Rachel
  full_name: Warga, Rachel
  last_name: Warga
- first_name: Christiane
  full_name: Nüsslein Volhard, Christiane
  last_name: Nüsslein Volhard
citation:
  ama: Kane D, Maischein H, Brand M, et al. The zebrafish early arrest mutants. <i>Development</i>.
    1996;123(1):57-66. doi:<a href="https://doi.org/10.1242/dev.123.1.57 ">10.1242/dev.123.1.57
    </a>
  apa: Kane, D., Maischein, H., Brand, M., Van Eeden, F., Furutani Seiki, M., Granato,
    M., … Nüsslein Volhard, C. (1996). The zebrafish early arrest mutants. <i>Development</i>.
    Company of Biologists. <a href="https://doi.org/10.1242/dev.123.1.57 ">https://doi.org/10.1242/dev.123.1.57
    </a>
  chicago: Kane, Donald, Hans Maischein, Michael Brand, Fredericus Van Eeden, Makoto
    Furutani Seiki, Michael Granato, Pascal Haffter, et al. “The Zebrafish Early Arrest
    Mutants.” <i>Development</i>. Company of Biologists, 1996. <a href="https://doi.org/10.1242/dev.123.1.57
    ">https://doi.org/10.1242/dev.123.1.57 </a>.
  ieee: D. Kane <i>et al.</i>, “The zebrafish early arrest mutants,” <i>Development</i>,
    vol. 123, no. 1. Company of Biologists, pp. 57–66, 1996.
  ista: Kane D, Maischein H, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Haffter
    P, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kelsh R, Mullins M, Odenthal J,
    Warga R, Nüsslein Volhard C. 1996. The zebrafish early arrest mutants. Development.
    123(1), 57–66.
  mla: Kane, Donald, et al. “The Zebrafish Early Arrest Mutants.” <i>Development</i>,
    vol. 123, no. 1, Company of Biologists, 1996, pp. 57–66, doi:<a href="https://doi.org/10.1242/dev.123.1.57
    ">10.1242/dev.123.1.57 </a>.
  short: D. Kane, H. Maischein, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato,
    P. Haffter, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, R. Kelsh, M. Mullins,
    J. Odenthal, R. Warga, C. Nüsslein Volhard, Development 123 (1996) 57–66.
date_created: 2018-12-11T12:07:29Z
date_published: 1996-12-01T00:00:00Z
date_updated: 2022-08-05T09:43:44Z
day: '01'
doi: '10.1242/dev.123.1.57 '
extern: '1'
external_id:
  pmid:
  - '9007229 '
fulldoi: 'https://doi.org/10.1242/dev.123.1.57 '
intvolume: '       123'
issue: '1'
language:
- iso: eng
month: '12'
oa_version: None
page: 57 - 66
pmid: 1
publication: Development
publication_identifier:
  issn:
  - 0950-1991
publication_status: published
publisher: Company of Biologists
publist_id: '1931'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The zebrafish early arrest mutants
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 123
year: '1996'
...
---
_id: '4191'
abstract:
- lang: eng
  text: In a screen for embryonic mutants in the zebrafish a large number of mutants
    were isolated with abnormal brain morphology, We describe here 26 mutants in 13
    complementation groups that show abnormal development of large regions of the
    brain, Early neurogenesis is affected in white tail (wit), During segmentation
    stages, homozygous wit embryos display an irregularly formed neural keel, particularly
    in the hindbrain, Using a variety of molecular markers, a severe increase in the
    number of various early differentiating neurons can be demonstrated, In contrast,
    late differentiating neurons, radial glial cells and some nonneural cell types,
    such as the neural crest-derived melanoblasts, are much reduced, Somitogenesis
    appears delayed, In addition, very reduced numbers of melanophores are present
    posterior to the mid-trunk, The wit phenotype is reminiscent of neurogenic mutants
    in Drosophila, such as Notch or Delta, In mutant parachute (pac) embryos the general
    organization of the hindbrain is disturbed and many rounded cells accumulate loosely
    in the hindbrain and midbrain ventricles, Mutants in a group of 6 genes, snakehead(snk),
    natter (nat), otter (ott) fullbrain (ful) viper (vip) and white snake (wis) develop
    collapsed brain ventricles, before showing signs of general degeneration, atlantis
    (atl), big head (bid), wicked brain (win), scabland (sbd) and eisspalte (ele)
    mutants have different malformation of the brain folds, Some of them have transient
    phenotypes, and mutant individuals may grow up to adults.
acknowledgement: We would like to thank Vladimir Korzh, Stefan Krauss, Monte Westerfield,
  Tom Jessell, Mark Fishman, Eric Weinberg, Andreas Püschel, Trevor Jowett and Jóse
  Campos-Ortega for providing antibodies and cDNA clones. We thank Suresh Jesuthasan
  and Tanya Whitfield for many helpful suggestions on the manuscript. Y.-J. J. wants
  to thank Christian Müller and Ralf Rupp for their instructive discussion. Y.-J.
  J. is a predoctoral fellow supported by Deutscher Akademischer Austauschdienst (DAAD).
article_processing_charge: No
article_type: original
author:
- first_name: Yunjin
  full_name: Jiang, Yunjin
  last_name: Jiang
- first_name: Michael
  full_name: Brand, Michael
  last_name: Brand
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: Dirk
  full_name: Beuchle, Dirk
  last_name: Beuchle
- first_name: Makoto
  full_name: Furutani Seiki, Makoto
  last_name: Furutani Seiki
- first_name: Robert
  full_name: Kelsh, Robert
  last_name: Kelsh
- first_name: Rachel
  full_name: Warga, Rachel
  last_name: Warga
- first_name: Michael
  full_name: Granato, Michael
  last_name: Granato
- first_name: Pascal
  full_name: Haffter, Pascal
  last_name: Haffter
- first_name: Matthias
  full_name: Hammerschmidt, Matthias
  last_name: Hammerschmidt
- first_name: Donald
  full_name: Kane, Donald
  last_name: Kane
- first_name: Mary
  full_name: Mullins, Mary
  last_name: Mullins
- first_name: Jörg
  full_name: Odenthal, Jörg
  last_name: Odenthal
- first_name: Fredericus
  full_name: Van Eeden, Fredericus
  last_name: Van Eeden
- first_name: Christiane
  full_name: Nüsslein Volhard, Christiane
  last_name: Nüsslein Volhard
citation:
  ama: Jiang Y, Brand M, Heisenberg C-PJ, et al. Mutations affecting neurogenesis
    and brain morphology in the zebrafish, Danio rerio. <i>Development</i>. 1996;123(1):205-216.
    doi:<a href="https://doi.org/10.1242/dev.123.1.205">10.1242/dev.123.1.205</a>
  apa: Jiang, Y., Brand, M., Heisenberg, C.-P. J., Beuchle, D., Furutani Seiki, M.,
    Kelsh, R., … Nüsslein Volhard, C. (1996). Mutations affecting neurogenesis and
    brain morphology in the zebrafish, Danio rerio. <i>Development</i>. Company of
    Biologists. <a href="https://doi.org/10.1242/dev.123.1.205">https://doi.org/10.1242/dev.123.1.205</a>
  chicago: Jiang, Yunjin, Michael Brand, Carl-Philipp J Heisenberg, Dirk Beuchle,
    Makoto Furutani Seiki, Robert Kelsh, Rachel Warga, et al. “Mutations Affecting
    Neurogenesis and Brain Morphology in the Zebrafish, Danio Rerio.” <i>Development</i>.
    Company of Biologists, 1996. <a href="https://doi.org/10.1242/dev.123.1.205">https://doi.org/10.1242/dev.123.1.205</a>.
  ieee: Y. Jiang <i>et al.</i>, “Mutations affecting neurogenesis and brain morphology
    in the zebrafish, Danio rerio,” <i>Development</i>, vol. 123, no. 1. Company of
    Biologists, pp. 205–216, 1996.
  ista: Jiang Y, Brand M, Heisenberg C-PJ, Beuchle D, Furutani Seiki M, Kelsh R, Warga
    R, Granato M, Haffter P, Hammerschmidt M, Kane D, Mullins M, Odenthal J, Van Eeden
    F, Nüsslein Volhard C. 1996. Mutations affecting neurogenesis and brain morphology
    in the zebrafish, Danio rerio. Development. 123(1), 205–216.
  mla: Jiang, Yunjin, et al. “Mutations Affecting Neurogenesis and Brain Morphology
    in the Zebrafish, Danio Rerio.” <i>Development</i>, vol. 123, no. 1, Company of
    Biologists, 1996, pp. 205–16, doi:<a href="https://doi.org/10.1242/dev.123.1.205">10.1242/dev.123.1.205</a>.
  short: Y. Jiang, M. Brand, C.-P.J. Heisenberg, D. Beuchle, M. Furutani Seiki, R.
    Kelsh, R. Warga, M. Granato, P. Haffter, M. Hammerschmidt, D. Kane, M. Mullins,
    J. Odenthal, F. Van Eeden, C. Nüsslein Volhard, Development 123 (1996) 205–216.
date_created: 2018-12-11T12:07:30Z
date_published: 1996-12-01T00:00:00Z
date_updated: 2022-08-05T09:13:51Z
day: '01'
doi: 10.1242/dev.123.1.205
extern: '1'
external_id:
  pmid:
  - '9007241'
fulldoi: https://doi.org/10.1242/dev.123.1.205
intvolume: '       123'
issue: '1'
language:
- iso: eng
month: '12'
oa_version: None
page: 205 - 216
pmid: 1
publication: Development
publication_identifier:
  issn:
  - 0950-1991
publication_status: published
publisher: Company of Biologists
publist_id: '1926'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mutations affecting neurogenesis and brain morphology in the zebrafish, Danio
  rerio
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 123
year: '1996'
...
---
_id: '4215'
abstract:
- lang: eng
  text: In a screen for early developmental mutants of the zebrafish, we have identified
    mutations specifically affecting the internal organs, We identified 53 mutations
    affecting the cardiovascular system, Nine of them affect specific landmarks of
    heart morphogenesis. Mutations in four genes cause a failure in the fusion of
    the bilateral heart primordia, resulting in cardia bifida. In lonely atrium, no
    heart venticle is visible and the atrium is directly fused to the outflow tract.
    In the overlooped mutant, the relative position of the two heart chambers is distorted,
    The heart is enormously enlarged in the santa mutant, In two mutants, scotch tape
    and superglue, the cardiac jelly between the two layers of the heart is significantly
    reduced, We also identified a number of mutations affecting the function of the
    heart, The mutations affecting heart function can be subdivided into two groups,
    one affecting heart contraction and another affecting the rhythm of the heart
    beat. Among the contractility group of mutants are 5 with no heart beat at all
    and 15 with a reduced heart beat of one or both chambers, 6 mutations are in the
    rhythmicity group and specifically affect the beating pattern of the heart, Mutations
    in two genes, bypass and kurzschluss, cause specific defects in the circulatory
    system, In addition to the heart mutants, we identified 23 mutations affecting
    the integrity of the liver, the intestine or the kidney, In this report, we demonstrate
    that it is feasible to screen for genes specific for the patterning or function
    of certain internal organs in the zebrafish, The mutations presented here could
    serve as an entrypoint to the establishment of a genetic hierarchy underlying
    organogenesis.
acknowledgement: We thank Chris Simpson and Colleen Boggs for excellent technical
  help. We thank Mark C. Fishman for the advice and providing fish for complementation;
  Bernadette Fouquet, Kerri S. Warren and Brant M. Weinstein for critically reading
  the manuscript. JNC is supported in part by NIH grant RO1-HL49579 to Mark C. Fishman.
article_processing_charge: No
article_type: original
author:
- first_name: Jaunian
  full_name: Chen, Jaunian
  last_name: Chen
- first_name: Pascal
  full_name: Haffter, Pascal
  last_name: Haffter
- first_name: Jörg
  full_name: Odenthal, Jörg
  last_name: Odenthal
- first_name: Elisabeth
  full_name: Vogelsang, Elisabeth
  last_name: Vogelsang
- first_name: Michael
  full_name: Brand, Michael
  last_name: Brand
- first_name: Fredericus
  full_name: Van Eeden, Fredericus
  last_name: Van Eeden
- first_name: Makoto
  full_name: Furutani Seiki, Makoto
  last_name: Furutani Seiki
- first_name: Michael
  full_name: Granato, Michael
  last_name: Granato
- first_name: Matthias
  full_name: Hammerschmidt, Matthias
  last_name: Hammerschmidt
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: Yunjin
  full_name: Jiang, Yunjin
  last_name: Jiang
- first_name: Donald
  full_name: Kane, Donald
  last_name: Kane
- first_name: Robert
  full_name: Kelsh, Robert
  last_name: Kelsh
- first_name: Mary
  full_name: Mullins, Mary
  last_name: Mullins
- first_name: Christiane
  full_name: Nüsslein Volhard, Christiane
  last_name: Nüsslein Volhard
citation:
  ama: Chen J, Haffter P, Odenthal J, et al. Mutations affecting the cardiovascular
    system and other internal organs in zebrafish. <i>Development</i>. 1996;123:293-302.
    doi:<a href="https://doi.org/10.1242/dev.123.1.293">10.1242/dev.123.1.293</a>
  apa: Chen, J., Haffter, P., Odenthal, J., Vogelsang, E., Brand, M., Van Eeden, F.,
    … Nüsslein Volhard, C. (1996). Mutations affecting the cardiovascular system and
    other internal organs in zebrafish. <i>Development</i>. Company of Biologists.
    <a href="https://doi.org/10.1242/dev.123.1.293">https://doi.org/10.1242/dev.123.1.293</a>
  chicago: Chen, Jaunian, Pascal Haffter, Jörg Odenthal, Elisabeth Vogelsang, Michael
    Brand, Fredericus Van Eeden, Makoto Furutani Seiki, et al. “Mutations Affecting
    the Cardiovascular System and Other Internal Organs in Zebrafish.” <i>Development</i>.
    Company of Biologists, 1996. <a href="https://doi.org/10.1242/dev.123.1.293">https://doi.org/10.1242/dev.123.1.293</a>.
  ieee: J. Chen <i>et al.</i>, “Mutations affecting the cardiovascular system and
    other internal organs in zebrafish,” <i>Development</i>, vol. 123. Company of
    Biologists, pp. 293–302, 1996.
  ista: Chen J, Haffter P, Odenthal J, Vogelsang E, Brand M, Van Eeden F, Furutani
    Seiki M, Granato M, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Kelsh R,
    Mullins M, Nüsslein Volhard C. 1996. Mutations affecting the cardiovascular system
    and other internal organs in zebrafish. Development. 123, 293–302.
  mla: Chen, Jaunian, et al. “Mutations Affecting the Cardiovascular System and Other
    Internal Organs in Zebrafish.” <i>Development</i>, vol. 123, Company of Biologists,
    1996, pp. 293–302, doi:<a href="https://doi.org/10.1242/dev.123.1.293">10.1242/dev.123.1.293</a>.
  short: J. Chen, P. Haffter, J. Odenthal, E. Vogelsang, M. Brand, F. Van Eeden, M.
    Furutani Seiki, M. Granato, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D.
    Kane, R. Kelsh, M. Mullins, C. Nüsslein Volhard, Development 123 (1996) 293–302.
date_created: 2018-12-11T12:07:38Z
date_published: 1996-12-01T00:00:00Z
date_updated: 2022-08-04T13:11:56Z
day: '01'
doi: 10.1242/dev.123.1.293
extern: '1'
external_id:
  pmid:
  - '9007249'
fulldoi: https://doi.org/10.1242/dev.123.1.293
intvolume: '       123'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://journals.biologists.com/dev/article/123/1/293/39344/Mutations-affecting-the-cardiovascular-system-and
month: '12'
oa: 1
oa_version: Published Version
page: 293 - 302
pmid: 1
publication: Development
publication_identifier:
  issn:
  - 0950-1991
publication_status: published
publisher: Company of Biologists
publist_id: '1902'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mutations affecting the cardiovascular system and other internal organs in
  zebrafish
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 123
year: '1996'
...
---
_id: '2559'
abstract:
- lang: eng
  text: Taking advantage of the restricted expression of metabotropic glutamate receptor
    subtype 6 (mGIuR6) in retinal ON bipolar cells, we generated knockout mice lacking
    mGIuR6 expression. The homozygous mutant mice showed a loss of ON responses but
    unchanged OFF responses to light. The mutant mice displayed no obvious changes
    in retinal cell organization nor in the projection of optic fibers to the brain.
    Furthermore, the mGIuR6-deficient mice showed visual behavioral responses to light
    stimulation as examined by shuttle box avoidance behavior experiments using light
    exposure as a conditioned stimulus. The results demonstrate that mGIuR6 is essential
    in synaptic transmission to the ON bipolar cell and that the OFF response provides
    an important means for transmitting visual information.
acknowledgement: We thank Drs. N. Mizuno, M. Iso, M. Tachibana, A. Kaneko, M. Tessier-Lavigne,
  and T. Hensch for useful advice and A. Uesugi for photographic assistance. This
  work is supported by grants in aid for specially promoted research, for scientific
  research on priority areas, and for scientific research (A) from the Ministry of
  Education, Science, and Culture in Japan and by grants from the Ministry of Health
  and Welfare of Japan, the Sankyo Foundation, and the Senri Life Science Foundation.
article_processing_charge: No
article_type: original
author:
- first_name: Masayuki
  full_name: Masu, Masayuki
  last_name: Masu
- first_name: Hideki
  full_name: Iwakabe, Hideki
  last_name: Iwakabe
- first_name: Yoshiaki
  full_name: Tagawa, Yoshiaki
  last_name: Tagawa
- first_name: Tomomitsu
  full_name: Miyoshi, Tomomitsu
  last_name: Miyoshi
- first_name: Masayuki
  full_name: Yamashita, Masayuki
  last_name: Yamashita
- first_name: Yutaka
  full_name: Fukuda, Yutaka
  last_name: Fukuda
- first_name: Hitoshi
  full_name: Sasaki, Hitoshi
  last_name: Sasaki
- first_name: Kano
  full_name: Hiroi, Kano
  last_name: Hiroi
- first_name: Yasuhisa
  full_name: Nakamura, Yasuhisa
  last_name: Nakamura
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Masahiko
  full_name: Takada, Masahiko
  last_name: Takada
- first_name: Kenji
  full_name: Nakamura, Kenji
  last_name: Nakamura
- first_name: Kazuki
  full_name: Nakao, Kazuki
  last_name: Nakao
- first_name: Motoya
  full_name: Katsuki, Motoya
  last_name: Katsuki
- first_name: Shigetada
  full_name: Nakanishi, Shigetada
  last_name: Nakanishi
citation:
  ama: Masu M, Iwakabe H, Tagawa Y, et al. Specific deficit of the ON response in
    visual transmission by targeted disruption of the mGIuR6 gene. <i>Cell</i>. 1995;80(5):757-765.
    doi:<a href="https://doi.org/10.1016/0092-8674(95)90354-2">10.1016/0092-8674(95)90354-2</a>
  apa: Masu, M., Iwakabe, H., Tagawa, Y., Miyoshi, T., Yamashita, M., Fukuda, Y.,
    … Nakanishi, S. (1995). Specific deficit of the ON response in visual transmission
    by targeted disruption of the mGIuR6 gene. <i>Cell</i>. Cell Press. <a href="https://doi.org/10.1016/0092-8674(95)90354-2">https://doi.org/10.1016/0092-8674(95)90354-2</a>
  chicago: Masu, Masayuki, Hideki Iwakabe, Yoshiaki Tagawa, Tomomitsu Miyoshi, Masayuki
    Yamashita, Yutaka Fukuda, Hitoshi Sasaki, et al. “Specific Deficit of the ON Response
    in Visual Transmission by Targeted Disruption of the MGIuR6 Gene.” <i>Cell</i>.
    Cell Press, 1995. <a href="https://doi.org/10.1016/0092-8674(95)90354-2">https://doi.org/10.1016/0092-8674(95)90354-2</a>.
  ieee: M. Masu <i>et al.</i>, “Specific deficit of the ON response in visual transmission
    by targeted disruption of the mGIuR6 gene,” <i>Cell</i>, vol. 80, no. 5. Cell
    Press, pp. 757–765, 1995.
  ista: Masu M, Iwakabe H, Tagawa Y, Miyoshi T, Yamashita M, Fukuda Y, Sasaki H, Hiroi
    K, Nakamura Y, Shigemoto R, Takada M, Nakamura K, Nakao K, Katsuki M, Nakanishi
    S. 1995. Specific deficit of the ON response in visual transmission by targeted
    disruption of the mGIuR6 gene. Cell. 80(5), 757–765.
  mla: Masu, Masayuki, et al. “Specific Deficit of the ON Response in Visual Transmission
    by Targeted Disruption of the MGIuR6 Gene.” <i>Cell</i>, vol. 80, no. 5, Cell
    Press, 1995, pp. 757–65, doi:<a href="https://doi.org/10.1016/0092-8674(95)90354-2">10.1016/0092-8674(95)90354-2</a>.
  short: M. Masu, H. Iwakabe, Y. Tagawa, T. Miyoshi, M. Yamashita, Y. Fukuda, H. Sasaki,
    K. Hiroi, Y. Nakamura, R. Shigemoto, M. Takada, K. Nakamura, K. Nakao, M. Katsuki,
    S. Nakanishi, Cell 80 (1995) 757–765.
date_created: 2018-12-11T11:58:23Z
date_published: 1995-02-10T00:00:00Z
date_updated: 2022-06-28T13:27:50Z
day: '10'
doi: 10.1016/0092-8674(95)90354-2
extern: '1'
external_id:
  pmid:
  - '7889569'
fulldoi: https://doi.org/10.1016/0092-8674(95)90354-2
intvolume: '        80'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.sciencedirect.com/science/article/pii/0092867495903542
month: '02'
oa: 1
oa_version: Published Version
page: 757 - 765
pmid: 1
publication: Cell
publication_identifier:
  issn:
  - 0092-8674
publication_status: published
publisher: Cell Press
publist_id: '4339'
quality_controlled: '1'
status: public
title: Specific deficit of the ON response in visual transmission by targeted disruption
  of the mGIuR6 gene
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 80
year: '1995'
...
---
_id: '3454'
abstract:
- lang: eng
  text: The study of gene expression and regulation in the central nervous system
    (CNS) is a daunting task because of the diversity of neuronal phenotypes and the
    complexity of many protein classes. Molecular cloning revealed the presence of
    a large number of different protein families in the CNS, each comprising several
    members. Ligand-gated ion channels may serve as an example to illustrate this
    point (for review, see Unwin, 1993). Heterologous expression combined with electrophysiological
    analysis suggests that ligand-gated channels are multimeric proteins with functional
    properties depending on the subunit composition. Very little is known, however,
    about how the functional properties of the recombinant and native receptors relate
    to each other. Thus, it is of eminent importance to elucidate the subunit expression
    profile in different types of neurons in the CNS and to correlate this with the
    functional properties of the native receptors.
article_processing_charge: No
author:
- first_name: Hannah
  full_name: Monyer, Hannah
  last_name: Monyer
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: 'Monyer H, Jonas PM. Polymerase chain reaction analysis of ion channel expression
    in single neurons of brain slices. In: Sakmann B, Neher E, eds. <i>Single-Channel
    Recording</i>. Plenum; 1995:357-373. doi:<a href="https://doi.org/10.1007/978-1-4419-1229-9_16">10.1007/978-1-4419-1229-9_16</a>'
  apa: Monyer, H., &#38; Jonas, P. M. (1995). Polymerase chain reaction analysis of
    ion channel expression in single neurons of brain slices. In B. Sakmann &#38;
    E. Neher (Eds.), <i>Single-channel recording</i> (pp. 357–373). Plenum. <a href="https://doi.org/10.1007/978-1-4419-1229-9_16">https://doi.org/10.1007/978-1-4419-1229-9_16</a>
  chicago: Monyer, Hannah, and Peter M Jonas. “Polymerase Chain Reaction Analysis
    of Ion Channel Expression in Single Neurons of Brain Slices.” In <i>Single-Channel
    Recording</i>, edited by Bert Sakmann and Erwin Neher, 357–73. Plenum, 1995. <a
    href="https://doi.org/10.1007/978-1-4419-1229-9_16">https://doi.org/10.1007/978-1-4419-1229-9_16</a>.
  ieee: H. Monyer and P. M. Jonas, “Polymerase chain reaction analysis of ion channel
    expression in single neurons of brain slices,” in <i>Single-channel recording</i>,
    B. Sakmann and E. Neher, Eds. Plenum, 1995, pp. 357–373.
  ista: 'Monyer H, Jonas PM. 1995.Polymerase chain reaction analysis of ion channel
    expression in single neurons of brain slices. In: Single-channel recording. ,
    357–373.'
  mla: Monyer, Hannah, and Peter M. Jonas. “Polymerase Chain Reaction Analysis of
    Ion Channel Expression in Single Neurons of Brain Slices.” <i>Single-Channel Recording</i>,
    edited by Bert Sakmann and Erwin Neher, Plenum, 1995, pp. 357–73, doi:<a href="https://doi.org/10.1007/978-1-4419-1229-9_16">10.1007/978-1-4419-1229-9_16</a>.
  short: H. Monyer, P.M. Jonas, in:, B. Sakmann, E. Neher (Eds.), Single-Channel Recording,
    Plenum, 1995, pp. 357–373.
date_created: 2018-12-11T12:03:25Z
date_published: 1995-01-01T00:00:00Z
date_updated: 2022-06-28T09:13:01Z
day: '01'
doi: 10.1007/978-1-4419-1229-9_16
editor:
- first_name: Bert
  full_name: Sakmann, Bert
  last_name: Sakmann
- first_name: Erwin
  full_name: Neher, Erwin
  last_name: Neher
extern: '1'
fulldoi: https://doi.org/10.1007/978-1-4419-1229-9_16
language:
- iso: eng
main_file_link:
- url: https://link.springer.com/chapter/10.1007/978-1-4419-1229-9_16
month: '01'
oa_version: None
page: 357 - 373
publication: Single-channel recording
publication_identifier:
  isbn:
  - 978-0-306-44870-6
publication_status: published
publisher: Plenum
publist_id: '2933'
quality_controlled: '1'
status: public
title: Polymerase chain reaction analysis of ion channel expression in single neurons
  of brain slices
type: book_chapter
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
year: '1995'
...
---
_id: '3455'
abstract:
- lang: eng
  text: At a synapse, the transmitter is stored in synaptic vesicles and is released
    into the synaptic cleft almost instantaneously upon fusion of these vesicles with
    the presynaptic membrane. Subsequently, the transmitter diffuses to ligand-gated
    ion channels in the postsynaptic density, binds to them, and thereby causes channel
    activation. Unfortunately, we have estimates neither of the exact amount of transmitter
    in the synaptic vesicle nor of the concentration in the synaptic cleft reaching
    the postsynaptic receptors, and in some cases even the identity of the transmitter
    is unknown. These questions may be addressed by modeling of release and diffusion.
    Such a theoretical approach, however, is based on several assumptions, some of
    which lack experimental evidence.
article_processing_charge: No
author:
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: 'Jonas PM. Fast application of agonists to isolated membrane patches. In: Sakmann
    B, Neher E, eds. <i>Single-Channel Recording</i>. Plenum; 1995:231-243. doi:<a
    href="https://doi.org/10.1007/978-1-4419-1229-9_10">10.1007/978-1-4419-1229-9_10</a>'
  apa: Jonas, P. M. (1995). Fast application of agonists to isolated membrane patches.
    In B. Sakmann &#38; E. Neher (Eds.), <i>Single-channel recording</i> (pp. 231–243).
    Plenum. <a href="https://doi.org/10.1007/978-1-4419-1229-9_10">https://doi.org/10.1007/978-1-4419-1229-9_10</a>
  chicago: Jonas, Peter M. “Fast Application of Agonists to Isolated Membrane Patches.”
    In <i>Single-Channel Recording</i>, edited by Bert Sakmann and Erwin Neher, 231–43.
    Plenum, 1995. <a href="https://doi.org/10.1007/978-1-4419-1229-9_10">https://doi.org/10.1007/978-1-4419-1229-9_10</a>.
  ieee: P. M. Jonas, “Fast application of agonists to isolated membrane patches,”
    in <i>Single-channel recording</i>, B. Sakmann and E. Neher, Eds. Plenum, 1995,
    pp. 231–243.
  ista: 'Jonas PM. 1995.Fast application of agonists to isolated membrane patches.
    In: Single-channel recording. , 231–243.'
  mla: Jonas, Peter M. “Fast Application of Agonists to Isolated Membrane Patches.”
    <i>Single-Channel Recording</i>, edited by Bert Sakmann and Erwin Neher, Plenum,
    1995, pp. 231–43, doi:<a href="https://doi.org/10.1007/978-1-4419-1229-9_10">10.1007/978-1-4419-1229-9_10</a>.
  short: P.M. Jonas, in:, B. Sakmann, E. Neher (Eds.), Single-Channel Recording, Plenum,
    1995, pp. 231–243.
date_created: 2018-12-11T12:03:25Z
date_published: 1995-01-01T00:00:00Z
date_updated: 2022-06-28T08:51:40Z
day: '01'
doi: 10.1007/978-1-4419-1229-9_10
editor:
- first_name: Bert
  full_name: Sakmann, Bert
  last_name: Sakmann
- first_name: Erwin
  full_name: Neher, Erwin
  last_name: Neher
extern: '1'
fulldoi: https://doi.org/10.1007/978-1-4419-1229-9_10
language:
- iso: eng
main_file_link:
- url: https://link.springer.com/chapter/10.1007/978-1-4419-1229-9_10
month: '01'
oa_version: None
page: 231 - 243
publication: Single-channel recording
publication_identifier:
  isbn:
  - 978-0-306-44870-6
publication_status: published
publisher: Plenum
publist_id: '2932'
quality_controlled: '1'
status: public
title: Fast application of agonists to isolated membrane patches
type: book_chapter
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
year: '1995'
...
---
_id: '3478'
abstract:
- lang: eng
  text: 1. Properties of dendritic glutamate receptor (GluR) channels were investigated
    using fast application of glutamate to outside-out membrane patches isolated from
    the apical dendrites of CA3 and CA1 pyramidal neurons in rat hippocampal slices.
    CA3 patches were formed (15-76 μm from the soma) in the region of messy fibre
    (MF) synapses, and CA1 patches (25-174 μm from the soma) in the region of Schaffer
    collateral (SC) innervation. 2. Dual-component responses consisting of a rapidly
    rising and decaying component followed by a second, substantially slower, component
    were elicited by 1 ms pulses of 1 mM glutamate in the presence of 10 μM glycine
    and absence of external Mg2+. The fast component was selectively blocked by 2-5
    μM 6-cyano-7-nitroquinoxaline-2,3-dione (CNQX) and the slow component by 30 μM
    D-2-amino-5-phosphonopentanoic acid (D-AP5), suggesting that the fast and slow
    components were mediated by the GluR channels of the L-α-amino-3-hydroxy-5-methyl-4-isoxazolepropionate
    (AMPA) and NMDA type, respectively. The peak amplitude ratio of the NMDA to AMPA
    receptor-mediated components varied between 0.03 and 0.62 in patches from both
    CA3 and CA1 dendrites. Patches lacking either component were rarely observed.
    3. The peak current-voltage (I-V) relationship of the fast component was almost
    linear, whereas the I-V relationship of the slow component showed a region of
    negative slope in the presence of 1 mM external Mg2+. The reversal potential for
    both components was close to 0 mV. 4. Kainate-preferring GluR channels did not
    contribute appreciably to the response to glutamate. The responses to 100 ms pulses
    of 1 mM glutamate were mimicked by application of 1 mM AMPA, whereas 1 mM kainate
    produced much smaller, weakly desensitizing currents. This suggests that the fast
    component is primarily mediated by the action of glutamate on AMPA-preferring
    receptors. 5. The mean elementary conductance of AMPA receptor channels was about
    10 pS, as estimated by non-stationary fluctuation analysis. The permeability of
    these channels to Ca2+ was low (~5% of the permeability to Cs+). 6. The elementary
    conductance of NMDA receptor channels was larger, with a main conductance state
    of about 45 pS. These channels were 3.6 times more permeable to Ca2+ than to Cs+.
    7. AMPA receptor-mediated currents activated rapidly in response to 1 ms pulses
    of 1 mM glutamate and deactivated with a predominant, fast time constant and a
    smaller, slower component (τ1≃2 ms, τ2≃8 ms, contributing ~80 and ~20% to the
    total decay amplitude, respectively). Desensitization of the current during a
    100 ms pulse was best fitted by two time constants (τ1≃10 ms, ~60%; τ2≃34 ms,
    ~40%). 8. NMDA receptor-mediated currents in response to 1 ms pulses of 1 mM glutamate
    activated and deactivated much more slowly than AMPA receptor-mediated currents.
    The time course could be described by a single exponential rising phase (τ≃7 ms)
    followed by a double exponential decay (τ1≃200 ms, ~80%; τ2≃1-3 s, ~20%). 9. Mg2+
    blocked the NMDA component in a voltage-dependent manner, with a half-maximal
    inhibitory concentration (IC50) of 21 μM at -80 mV. At physiological Mg2+ concentrations,
    block of the NMDA component could be rapidly relieved with voltage jumps from
    negative to positive potentials. Block of the current upon return to negative
    potentials occurred almost instantaneously. 10. Zn2+ also selectively-blocked
    the NMDA receptor-mediated current with an IC50 of 22 μM, but this block differed
    from that of Mg2+ in that it showed little voltage dependence. Rapid application
    of Zn2+ together with glutamate produced partial block of the current. More block
    was observed if Zn2+ and glutamate were co-applied when NMDA receptor channels
    were already open. 11. The functional properties of dendritic GluRs were similar
    to those found at the soma. Knowledge of these properties facilitated simulations
    investigating the contribution of coactivated AMPA and NMDA receptors to synaptic
    depolarization and Ca2+ entry into dendritic spines. Because of its slow deactivation,
    the NMDA receptor-mediated current contributes substantially to depolarization
    and Ca2+ entry and is susceptible to modulation over a period of seconds, either
    by backpropagating action potentials or by the release of Zn2+ from presynaptic
    boutons.
acknowledgement: We thank M.Hausser, A.Roth, P.Ruppersberg, and G.Stuart for helpful
  discussions and M.H. and G.S. for critically reading the manuscript. We also thank
  M.Kaiser for expert technical assistance and F.Helmchen, M.Huke and A.Roth for computer
  programming. Financial support from the Alexander von Humboldt Foundation and the
  Deutsche Forschungsgemeinschaft (SFB317) is gratefully acknowledged.
article_processing_charge: No
article_type: original
author:
- first_name: Nelson
  full_name: Spruston, Nelson
  last_name: Spruston
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Bert
  full_name: Sakmann, Bert
  last_name: Sakmann
citation:
  ama: Spruston N, Jonas PM, Sakmann B. Dendritic glutamate receptor channels in rat
    hippocampal CA3 and CA1 pyramidal neurons. <i>Journal of Physiology</i>. 1995;482(Pt
    2):325-352. doi:<a href="https://doi.org/10.1113/jphysiol.1995.sp020521">10.1113/jphysiol.1995.sp020521</a>
  apa: Spruston, N., Jonas, P. M., &#38; Sakmann, B. (1995). Dendritic glutamate receptor
    channels in rat hippocampal CA3 and CA1 pyramidal neurons. <i>Journal of Physiology</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1113/jphysiol.1995.sp020521">https://doi.org/10.1113/jphysiol.1995.sp020521</a>
  chicago: Spruston, Nelson, Peter M Jonas, and Bert Sakmann. “Dendritic Glutamate
    Receptor Channels in Rat Hippocampal CA3 and CA1 Pyramidal Neurons.” <i>Journal
    of Physiology</i>. Wiley-Blackwell, 1995. <a href="https://doi.org/10.1113/jphysiol.1995.sp020521">https://doi.org/10.1113/jphysiol.1995.sp020521</a>.
  ieee: N. Spruston, P. M. Jonas, and B. Sakmann, “Dendritic glutamate receptor channels
    in rat hippocampal CA3 and CA1 pyramidal neurons,” <i>Journal of Physiology</i>,
    vol. 482, no. Pt 2. Wiley-Blackwell, pp. 325–352, 1995.
  ista: Spruston N, Jonas PM, Sakmann B. 1995. Dendritic glutamate receptor channels
    in rat hippocampal CA3 and CA1 pyramidal neurons. Journal of Physiology. 482(Pt
    2), 325–352.
  mla: Spruston, Nelson, et al. “Dendritic Glutamate Receptor Channels in Rat Hippocampal
    CA3 and CA1 Pyramidal Neurons.” <i>Journal of Physiology</i>, vol. 482, no. Pt
    2, Wiley-Blackwell, 1995, pp. 325–52, doi:<a href="https://doi.org/10.1113/jphysiol.1995.sp020521">10.1113/jphysiol.1995.sp020521</a>.
  short: N. Spruston, P.M. Jonas, B. Sakmann, Journal of Physiology 482 (1995) 325–352.
date_created: 2018-12-11T12:03:32Z
date_published: 1995-01-15T00:00:00Z
date_updated: 2022-06-28T08:08:40Z
day: '15'
doi: 10.1113/jphysiol.1995.sp020521
extern: '1'
external_id:
  pmid:
  - '7536248'
fulldoi: https://doi.org/10.1113/jphysiol.1995.sp020521
intvolume: '       482'
issue: Pt 2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://physoc.onlinelibrary.wiley.com/doi/abs/10.1113/jphysiol.1995.sp020521
month: '01'
oa: 1
oa_version: Published Version
page: 325 - 352
pmid: 1
publication: Journal of Physiology
publication_identifier:
  issn:
  - 0022-3751
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2909'
quality_controlled: '1'
status: public
title: Dendritic glutamate receptor channels in rat hippocampal CA3 and CA1 pyramidal
  neurons
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 482
year: '1995'
...
---
_id: '3479'
abstract:
- lang: eng
  text: 1. Glutamate receptor (GluR) channels were studied in basket cells in the
    dentate gyrus of rat hippocampal slices. Basket cells were identified by their
    location, dendritic morphology and high frequency of action potentials generated
    during sustained current injection. 2. Dual-component currents were activated
    by fast application of glutamate to outside-out membrane patches isolated from
    basket cell somata (10 μM glycine, no external Mg2+). The fast component was selectively
    blocked by 6-cyano-7-nitroquinoxaline-2,3-dione (CNQX), the slow component by
    D-2-amino-5-phosphonopentanoic acid (D-AP5). This suggests that the two components
    were mediated by α-amino-3-hydroxy-5-methyl-4-isoxazolepropionate receptor (AMPAR)/kainate
    receptor and N-methyl-D-aspartate receptor (NMDAR) channels, respectively. The
    mean ratio of the peak current of the NMDAR component to that of the AMPAR/kainate
    receptor component was 0.22 (1 ms pulses of 10 mM glutamate). 3. The AMPAR/kainate
    receptor component, which was studied in isolation in the presence of D-AP5, was
    identified as AMPAR mediated on the basis of the preferential activation by AMPA
    as compared with kainate, the weak desensitization of kainate-activated currents,
    the cross-desensitization between AMPA and kainate, and the reduction of desensitization
    by cyclothiazide. 4. Deactivation of basket cell AMPARs following 1 ms pulses
    of glutamate occurred with a time constant (τ) of 1.2 ± 0.1 ms (mean ± S.E.M.).
    During 100 ms glutamate pulses, AMPARs desensitized with a τ of 3.7 ± 0.2 ms.
    5. The peak current-voltage (I-V) relation of AMPAR-mediated currents in Na+-rich
    extracellular solution showed a reversal potential of -4.0 ± 2.6 mV and was characterized
    by a doubly rectifying shape. The conductance of single AMPAR channels was estimated
    as 22.6 ± 1.6 pS using non-stationary fluctuation analysis. AMPARs expressed in
    hippocampal basket cells mere highly Ca2+ permeable (P(Ca)/P(K) = 1.79). 6. NMDARs
    in hippocampal basket cells were studied in isolation in the presence of CNQX.
    Deactivation of NMDARs activated by glutamate pulses occurred bi-exponentially
    with mean τ values of 266 ± 23 ms (76%) and 2620 ± 383 ms (24%). 7. The peak I-V
    relation of the NMDAR-mediated component in Na+-rich extracellular solution showed
    a reversal potential of 1.5 ± 0.6 mV and a region of negative slope at negative
    membrane potentials in the presence of external Mg2+, due to voltage-dependent
    block by these ions. The conductance of single NMDAR channels in the main open
    state was 50.2 ± 1.8 pS. NMDARs in hippocampal basket cells were highly permeable
    to Ca2+ (P(Ca)/P(K) = 6.68). 8. AMPARs in hippocampal basket cells are characterized
    by about threefold faster kinetics and twentyfold higher Ca2+ permeability than
    AMPARs in hippocampal granule or pyramidal cells. Simulations show that the Ca2+
    influx through basket cell AMPARs is comparable to that through NMDARs at negative
    membrane potentials with physiological concentrations of Ca2+ and Mg2+. This suggests
    a dual pathway of synaptically mediated Ca2+ entry into interneurones.
acknowledgement: We thank Drs M.Häusser and H.Markram for critically reading the manuscript
  and M.Kaiser for technical assistance. Supported by the Deutsche Forschungsgemeinschaft
  (SFB-317/B14 grant to P.J. and a Graduiertenkollegstipendium to J.R.P.G.)
article_processing_charge: No
article_type: original
author:
- first_name: Duk
  full_name: Koh, Duk
  last_name: Koh
- first_name: Jörg
  full_name: Geiger, Jörg
  last_name: Geiger
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Bert
  full_name: Sakmann, Bert
  last_name: Sakmann
citation:
  ama: Koh D, Geiger J, Jonas PM, Sakmann B. Ca(2+)-permeable AMPA and NMDA receptor
    channels in basket cells of rat hippocampal dentate gyrus. <i>Journal of Physiology</i>.
    1995;485(Pt 2):383-402. doi:<a href="https://doi.org/10.1113/jphysiol.1995.sp020737">10.1113/jphysiol.1995.sp020737</a>
  apa: Koh, D., Geiger, J., Jonas, P. M., &#38; Sakmann, B. (1995). Ca(2+)-permeable
    AMPA and NMDA receptor channels in basket cells of rat hippocampal dentate gyrus.
    <i>Journal of Physiology</i>. Wiley-Blackwell. <a href="https://doi.org/10.1113/jphysiol.1995.sp020737">https://doi.org/10.1113/jphysiol.1995.sp020737</a>
  chicago: Koh, Duk, Jörg Geiger, Peter M Jonas, and Bert Sakmann. “Ca(2+)-Permeable
    AMPA and NMDA Receptor Channels in Basket Cells of Rat Hippocampal Dentate Gyrus.”
    <i>Journal of Physiology</i>. Wiley-Blackwell, 1995. <a href="https://doi.org/10.1113/jphysiol.1995.sp020737">https://doi.org/10.1113/jphysiol.1995.sp020737</a>.
  ieee: D. Koh, J. Geiger, P. M. Jonas, and B. Sakmann, “Ca(2+)-permeable AMPA and
    NMDA receptor channels in basket cells of rat hippocampal dentate gyrus,” <i>Journal
    of Physiology</i>, vol. 485, no. Pt 2. Wiley-Blackwell, pp. 383–402, 1995.
  ista: Koh D, Geiger J, Jonas PM, Sakmann B. 1995. Ca(2+)-permeable AMPA and NMDA
    receptor channels in basket cells of rat hippocampal dentate gyrus. Journal of
    Physiology. 485(Pt 2), 383–402.
  mla: Koh, Duk, et al. “Ca(2+)-Permeable AMPA and NMDA Receptor Channels in Basket
    Cells of Rat Hippocampal Dentate Gyrus.” <i>Journal of Physiology</i>, vol. 485,
    no. Pt 2, Wiley-Blackwell, 1995, pp. 383–402, doi:<a href="https://doi.org/10.1113/jphysiol.1995.sp020737">10.1113/jphysiol.1995.sp020737</a>.
  short: D. Koh, J. Geiger, P.M. Jonas, B. Sakmann, Journal of Physiology 485 (1995)
    383–402.
date_created: 2018-12-11T12:03:33Z
date_published: 1995-06-01T00:00:00Z
date_updated: 2022-06-28T07:54:44Z
day: '01'
doi: 10.1113/jphysiol.1995.sp020737
extern: '1'
external_id:
  pmid:
  - '7545230'
fulldoi: https://doi.org/10.1113/jphysiol.1995.sp020737
intvolume: '       485'
issue: Pt 2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1158000/pdf/jphysiol00319-0104.pdf
month: '06'
oa: 1
oa_version: Published Version
page: 383 - 402
pmid: 1
publication: Journal of Physiology
publication_identifier:
  issn:
  - 0022-3751
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2908'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ca(2+)-permeable AMPA and NMDA receptor channels in basket cells of rat hippocampal
  dentate gyrus
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 485
year: '1995'
...
---
_id: '3551'
abstract:
- lang: eng
  text: Common geometric models for proteins and other molecules are the space filling
    diagram, the solvent accessible surface, and the molecular surface. We describe
    software that computes metric properties of these models, including volume and
    surface area. It also measures voids or empty space enclosed by the protein, and
    it keeps track of surface area contributions of individual atoms. The software
    is based on 3-dimensional alpha complexes and on inclusion-exclusion formulas
    with terms derived from the simplices in this complex.
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Michael
  full_name: Facello, Michael
  last_name: Facello
- first_name: Ping
  full_name: Fu, Ping
  last_name: Fu
- first_name: Jie
  full_name: Liang, Jie
  last_name: Liang
citation:
  ama: 'Edelsbrunner H, Facello M, Fu P, Liang J. Measuring proteins and voids in
    proteins. In: <i>Proceedings of the 28th Annual Hawaii International Conference
    on System Sciences</i>. IEEE; 1995:256-264. doi:<a href="https://doi.org/10.1109/HICSS.1995.375331">10.1109/HICSS.1995.375331</a>'
  apa: 'Edelsbrunner, H., Facello, M., Fu, P., &#38; Liang, J. (1995). Measuring proteins
    and voids in proteins. In <i>Proceedings of the 28th Annual Hawaii International
    Conference on System Sciences</i> (pp. 256–264). Wailea, HI, United States of
    America: IEEE. <a href="https://doi.org/10.1109/HICSS.1995.375331">https://doi.org/10.1109/HICSS.1995.375331</a>'
  chicago: Edelsbrunner, Herbert, Michael Facello, Ping Fu, and Jie Liang. “Measuring
    Proteins and Voids in Proteins.” In <i>Proceedings of the 28th Annual Hawaii International
    Conference on System Sciences</i>, 256–64. IEEE, 1995. <a href="https://doi.org/10.1109/HICSS.1995.375331">https://doi.org/10.1109/HICSS.1995.375331</a>.
  ieee: H. Edelsbrunner, M. Facello, P. Fu, and J. Liang, “Measuring proteins and
    voids in proteins,” in <i>Proceedings of the 28th Annual Hawaii International
    Conference on System Sciences</i>, Wailea, HI, United States of America, 1995,
    pp. 256–264.
  ista: 'Edelsbrunner H, Facello M, Fu P, Liang J. 1995. Measuring proteins and voids
    in proteins. Proceedings of the 28th Annual Hawaii International Conference on
    System Sciences. HICSS: Hawaii International Conference on System Sciences, 256–264.'
  mla: Edelsbrunner, Herbert, et al. “Measuring Proteins and Voids in Proteins.” <i>Proceedings
    of the 28th Annual Hawaii International Conference on System Sciences</i>, IEEE,
    1995, pp. 256–64, doi:<a href="https://doi.org/10.1109/HICSS.1995.375331">10.1109/HICSS.1995.375331</a>.
  short: H. Edelsbrunner, M. Facello, P. Fu, J. Liang, in:, Proceedings of the 28th
    Annual Hawaii International Conference on System Sciences, IEEE, 1995, pp. 256–264.
conference:
  end_date: 1995-01-06
  location: Wailea, HI, United States of America
  name: 'HICSS: Hawaii International Conference on System Sciences'
  start_date: 1995-01-03
date_created: 2018-12-11T12:03:55Z
date_published: 1995-01-04T00:00:00Z
date_updated: 2022-06-27T13:54:41Z
day: '04'
doi: 10.1109/HICSS.1995.375331
extern: '1'
fulldoi: https://doi.org/10.1109/HICSS.1995.375331
language:
- iso: eng
main_file_link:
- url: https://ieeexplore.ieee.org/document/375331
month: '01'
oa_version: None
page: 256 - 264
publication: Proceedings of the 28th Annual Hawaii International Conference on System
  Sciences
publication_identifier:
  isbn:
  - 0-8186-6930-6
publication_status: published
publisher: IEEE
publist_id: '2834'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Measuring proteins and voids in proteins
type: conference
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
year: '1995'
...
---
_id: '3640'
abstract:
- lang: eng
  text: 'The probability of fixation of a favorable mutation is reduced if selection
    at other loci causes inherited variation in fitness. A general method for calculating
    the fixation probability of an allele that can find itself in a variety of genetic
    backgrounds is applied to find the effect of substitutions, fluctuating polymorphisms,
    and deleterious mutations in a large population. With loose linkage, r, the effects
    depend on the additive genetic variance in relative fitness, var(W), and act by
    reducing effective population size by (N/Ne) = 1 + var(W)/2r2. However, tightly
    linked loci can have a substantial effect not predictable from Ne. Linked deleterious
    mutations reduce the fixation probability of weakly favored alleles by exp (-2U/R),
    where U is the total mutation rate and R is the map length in Morgans. Substitutions
    can cause a greater reduction: an allele with advantage s &lt; scrit = (pi 2/6)
    loge (S/s) [var(W)/R] is very unlikely to be fixed. (S is the advantage of the
    substitution impeding fixation.) Fluctuating polymorphisms at many (n) linked
    loci can also have a substantial effect, reducing fixation probability by exp
    [square root of 2Kn var(W)/R] [K = -1/E((u-u)2/uv) depending on the frequencies
    (u,v) at the selected polymorphisms]. Hitchhiking due to all three kinds of selection
    may substantially impede adaptation that depends on weakly favored alleles.'
article_processing_charge: No
article_type: original
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Barton NH. Linkage and the limits to natural selection. <i>Genetics</i>. 1995;140(2):821-841.
    doi:<a href="https://doi.org/ 10.1093/genetics/140.2.821"> 10.1093/genetics/140.2.821</a>
  apa: Barton, N. H. (1995). Linkage and the limits to natural selection. <i>Genetics</i>.
    Genetics Society of America. <a href="https://doi.org/ 10.1093/genetics/140.2.821">https://doi.org/
    10.1093/genetics/140.2.821</a>
  chicago: Barton, Nicholas H. “Linkage and the Limits to Natural Selection.” <i>Genetics</i>.
    Genetics Society of America, 1995. <a href="https://doi.org/ 10.1093/genetics/140.2.821">https://doi.org/
    10.1093/genetics/140.2.821</a>.
  ieee: N. H. Barton, “Linkage and the limits to natural selection,” <i>Genetics</i>,
    vol. 140, no. 2. Genetics Society of America, pp. 821–841, 1995.
  ista: Barton NH. 1995. Linkage and the limits to natural selection. Genetics. 140(2),
    821–841.
  mla: Barton, Nicholas H. “Linkage and the Limits to Natural Selection.” <i>Genetics</i>,
    vol. 140, no. 2, Genetics Society of America, 1995, pp. 821–41, doi:<a href="https://doi.org/
    10.1093/genetics/140.2.821"> 10.1093/genetics/140.2.821</a>.
  short: N.H. Barton, Genetics 140 (1995) 821–841.
date_created: 2018-12-11T12:04:23Z
date_published: 1995-06-01T00:00:00Z
date_updated: 2025-06-30T10:18:45Z
day: '01'
doi: ' 10.1093/genetics/140.2.821'
extern: '1'
external_id:
  pmid:
  - '7498757'
fulldoi: https://doi.org/ 10.1093/genetics/140.2.821
intvolume: '       140'
issue: '2'
language:
- iso: eng
month: '06'
oa_version: Published Version
page: 821 - 841
pmid: 1
publication: Genetics
publication_identifier:
  issn:
  - 0016-6731
publication_status: published
publisher: Genetics Society of America
publist_id: '2743'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Linkage and the limits to natural selection
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 140
year: '1995'
...
---
_id: '2557'
abstract:
- lang: eng
  text: The distribution of the metabotropic glutamate receptors mGluR2 and mGluR3
    was immunohistochemically examined in the rat cerebellar cortex at both light
    and electron microscope levels. An antibody was raised against a fusion protein
    containing a C-terminal portion of mGluR2. On immunoblot, the antibody reacted
    with both mGluR2 and mGluR3 in rat brain. mGluR2/3 immunoreactivity was expressed
    in cell bodies, dendrites, and axon terminals of Golgi cells, as well as in presumed
    glial processes. Golgi axon terminals with mGluR2/3 immunoreactivity were often
    encountered in the vicinity of glutamatergic mossy fiber terminals. The results
    suggest that transmitter glutamate may exert control influences upon Golgi cells
    not only through dendritic mGluR2/3, but also through axonal mGluR2/3.
acknowledgement: "We are grateful to Mr. Akira Uesugi for photographic help. This
  work has been supported in part by research grants from the Ministry of Education,
  Science and Culture of Japan. The costs of publication of this article were defrayed
  in part\r\nby the payment of page charges. This article must therefore be hereby
  marked “advertisement” in accordance with 18 USC Section 1734 solely to indicate
  this fact. "
article_processing_charge: No
article_type: original
author:
- first_name: Hitoshi
  full_name: Ohishi, Hitoshi
  last_name: Ohishi
- first_name: Reiko
  full_name: Ogawa Meguro, Reiko
  last_name: Ogawa Meguro
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Takeshi
  full_name: Kaneko, Takeshi
  last_name: Kaneko
- first_name: Shigetada
  full_name: Nakanishi, Shigetada
  last_name: Nakanishi
- first_name: Noboru
  full_name: Mizuno, Noboru
  last_name: Mizuno
citation:
  ama: Ohishi H, Ogawa Meguro R, Shigemoto R, Kaneko T, Nakanishi S, Mizuno N. Immunohistochemical
    localization of metabotropic glutamate receptors, mGluR2 and mGluR3, in rat cerebellar
    cortex. <i>Neuron</i>. 1994;13(1):55-66. doi:<a href="https://doi.org/10.1016/0896-6273(94)90459-6">10.1016/0896-6273(94)90459-6</a>
  apa: Ohishi, H., Ogawa Meguro, R., Shigemoto, R., Kaneko, T., Nakanishi, S., &#38;
    Mizuno, N. (1994). Immunohistochemical localization of metabotropic glutamate
    receptors, mGluR2 and mGluR3, in rat cerebellar cortex. <i>Neuron</i>. Elsevier.
    <a href="https://doi.org/10.1016/0896-6273(94)90459-6">https://doi.org/10.1016/0896-6273(94)90459-6</a>
  chicago: Ohishi, Hitoshi, Reiko Ogawa Meguro, Ryuichi Shigemoto, Takeshi Kaneko,
    Shigetada Nakanishi, and Noboru Mizuno. “Immunohistochemical Localization of Metabotropic
    Glutamate Receptors, MGluR2 and MGluR3, in Rat Cerebellar Cortex.” <i>Neuron</i>.
    Elsevier, 1994. <a href="https://doi.org/10.1016/0896-6273(94)90459-6">https://doi.org/10.1016/0896-6273(94)90459-6</a>.
  ieee: H. Ohishi, R. Ogawa Meguro, R. Shigemoto, T. Kaneko, S. Nakanishi, and N.
    Mizuno, “Immunohistochemical localization of metabotropic glutamate receptors,
    mGluR2 and mGluR3, in rat cerebellar cortex,” <i>Neuron</i>, vol. 13, no. 1. Elsevier,
    pp. 55–66, 1994.
  ista: Ohishi H, Ogawa Meguro R, Shigemoto R, Kaneko T, Nakanishi S, Mizuno N. 1994.
    Immunohistochemical localization of metabotropic glutamate receptors, mGluR2 and
    mGluR3, in rat cerebellar cortex. Neuron. 13(1), 55–66.
  mla: Ohishi, Hitoshi, et al. “Immunohistochemical Localization of Metabotropic Glutamate
    Receptors, MGluR2 and MGluR3, in Rat Cerebellar Cortex.” <i>Neuron</i>, vol. 13,
    no. 1, Elsevier, 1994, pp. 55–66, doi:<a href="https://doi.org/10.1016/0896-6273(94)90459-6">10.1016/0896-6273(94)90459-6</a>.
  short: H. Ohishi, R. Ogawa Meguro, R. Shigemoto, T. Kaneko, S. Nakanishi, N. Mizuno,
    Neuron 13 (1994) 55–66.
date_created: 2018-12-11T11:58:22Z
date_published: 1994-07-01T00:00:00Z
date_updated: 2022-06-07T13:21:58Z
day: '01'
doi: 10.1016/0896-6273(94)90459-6
extern: '1'
external_id:
  pmid:
  - '8043281'
fulldoi: https://doi.org/10.1016/0896-6273(94)90459-6
intvolume: '        13'
issue: '1'
language:
- iso: eng
main_file_link:
- url: https://www.sciencedirect.com/science/article/pii/0896627394904596?via%3Dihub
month: '07'
oa_version: None
page: 55 - 66
pmid: 1
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
publist_id: '4342'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Immunohistochemical localization of metabotropic glutamate receptors, mGluR2
  and mGluR3, in rat cerebellar cortex
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 13
year: '1994'
...
---
_id: '3475'
abstract:
- lang: eng
  text: '1. A potassium channel activated by internal Na+ ions (K+Na channel) was
    identified in peripheral myelinated axons of Xenopus laevis using the cell-attached
    and excised configurations of the patch clamp technique. 2. The single-channel
    conductance for the main open state was 88 pS with [K+]o = 105 mM and pS with
    [K+]o = 2.5 mM ([K+]i = 105 mM). The channel was selectively permeable to K+ over
    Na+ ions. A characteristic feature of the K+Na channel was the frequent occurrence
    of subconductance states. 3. The open probability of the channel was strongly
    dependent on the concentration of Na+ ions at the inner side of the membrane.
    The half-maximal activating Na+ concentration and the Hill coefficient were 33
    mM and 2.9, respectively. The open probability of the channel showed only weak
    potential dependence. 4. The K+Na channel was relatively insensitive to external
    tetraethylammonium (TEA+) in comparison with voltage-dependent axonal K+ channels;
    the half-maximal inhibitory concentration (IC50) was 21.3 mM (at -90 mV). In contrast,
    the channel was blocked by low concentrations of external Ba2+ and Cs+ ions, with
    IC50 values of 0.7 and 1.1 mM, respectively (at -90 mV). The block by Ba2+ and
    Cs+ was more pronounced at negative than at positive membrane potentials. 5. A
    comparison of the number of K+Na channels in nodal and paranodal patches from
    the same axon revealed that the channel density was about 10-fold higher at the
    node of Ranvier than at the paranode. Moreover, a correlation between the number
    of K+Na channels and voltage-dependent Na+ channels in the same patches was found,
    suggesting co-localization of both channel types. 6. As weakly potential-dependent
    (''leakage'') channels, axonal K+Na channels may be involved in setting the resting
    potential of vertebrate axons. Simulations of Na+ ion diffusion suggest two possible
    mechanisms of activation of K+Na channels: the local increase of Na+ concentration
    in a cluster of Na+ channels during a single action potential or the accumulation
    in the intracellular axonal compartment during a train of action potentials.'
acknowledgement: 'We thank Drs M.Häusser and A. Villarroel for critically reading
  the manuscript, Dr E. v. Kitzing and A. Roth for many helpful discussions. This
  work was supported by the Deutsche Forschungsgemeinschaft (Vo188/13-2). '
article_processing_charge: No
article_type: original
author:
- first_name: Duk
  full_name: Koh, Duk
  last_name: Koh
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Werner
  full_name: Vogel, Werner
  last_name: Vogel
citation:
  ama: Koh D, Jonas PM, Vogel W. Na+-activated K+ channels localized in the nodal
    region of myelinated axons of Xenopus. <i>Journal of Physiology</i>. 1994;479:183-197.
    doi:<a href="https://doi.org/10.1113/jphysiol.1994.sp020287">10.1113/jphysiol.1994.sp020287</a>
  apa: Koh, D., Jonas, P. M., &#38; Vogel, W. (1994). Na+-activated K+ channels localized
    in the nodal region of myelinated axons of Xenopus. <i>Journal of Physiology</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1113/jphysiol.1994.sp020287">https://doi.org/10.1113/jphysiol.1994.sp020287</a>
  chicago: Koh, Duk, Peter M Jonas, and Werner Vogel. “Na+-Activated K+ Channels Localized
    in the Nodal Region of Myelinated Axons of Xenopus.” <i>Journal of Physiology</i>.
    Wiley-Blackwell, 1994. <a href="https://doi.org/10.1113/jphysiol.1994.sp020287">https://doi.org/10.1113/jphysiol.1994.sp020287</a>.
  ieee: D. Koh, P. M. Jonas, and W. Vogel, “Na+-activated K+ channels localized in
    the nodal region of myelinated axons of Xenopus,” <i>Journal of Physiology</i>,
    vol. 479. Wiley-Blackwell, pp. 183–197, 1994.
  ista: Koh D, Jonas PM, Vogel W. 1994. Na+-activated K+ channels localized in the
    nodal region of myelinated axons of Xenopus. Journal of Physiology. 479, 183–197.
  mla: Koh, Duk, et al. “Na+-Activated K+ Channels Localized in the Nodal Region of
    Myelinated Axons of Xenopus.” <i>Journal of Physiology</i>, vol. 479, Wiley-Blackwell,
    1994, pp. 183–97, doi:<a href="https://doi.org/10.1113/jphysiol.1994.sp020287">10.1113/jphysiol.1994.sp020287</a>.
  short: D. Koh, P.M. Jonas, W. Vogel, Journal of Physiology 479 (1994) 183–197.
date_created: 2018-12-11T12:03:31Z
date_published: 1994-01-01T00:00:00Z
date_updated: 2022-06-03T11:09:21Z
day: '01'
doi: 10.1113/jphysiol.1994.sp020287
extern: '1'
external_id:
  pmid:
  - '7799220 '
fulldoi: https://doi.org/10.1113/jphysiol.1994.sp020287
intvolume: '       479'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1155738/
month: '01'
oa: 1
oa_version: Published Version
page: 183 - 197
pmid: 1
publication: Journal of Physiology
publication_identifier:
  issn:
  - 0022-3751
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2912'
quality_controlled: '1'
status: public
title: Na+-activated K+ channels localized in the nodal region of myelinated axons
  of Xenopus
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 479
year: '1994'
...
