---
_id: '1054'
abstract:
- lang: eng
  text: We investigate local three-body correlations for bosonic particles in three
    dimensions and one dimension as a function of the interaction strength. The three-body
    correlation function g(3) is determined by measuring the three-body recombination
    rate in an ultracold gas of Cs atoms. In three dimensions, we measure the dependence
    of g(3) on the gas parameter in a BEC, finding good agreement with the theoretical
    prediction accounting for beyond-mean-field effects. In one dimension, we observe
    a reduction of g( 3) by several orders of magnitude upon increasing interactions
    from the weakly interacting BEC to the strongly interacting Tonks-Girardeau regime,
    in good agreement with predictions from the Lieb-Liniger model for all strengths
    of interaction.
acknowledgement: We thank R. Grimm for generous support. We gratefully acknowledge
  funding by the Austrian Science Fund (FWF) within Project No. I153-N16 and within
  the framework of the European Science Foundation (ESF) EuroQUASAR collective research
  project QuDeGPM. G. P. acknowledges funding from the EU through NAME-QUAM and AQUTE.
article_processing_charge: No
arxiv: 1
author:
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mahmoud
  full_name: Rabie, Mahmoud
  last_name: Rabie
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Katharina
  full_name: Lauber, Katharina
  last_name: Lauber
- first_name: Guido
  full_name: Pupillo, Guido
  last_name: Pupillo
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Haller E, Rabie M, Mark M, et al. Three-body correlation functions and recombination
    rates for bosons in three dimensions and one dimension. <i>Physical Review Letters</i>.
    2011;107(23). doi:<a href="https://doi.org/10.1103/PhysRevLett.107.230404">10.1103/PhysRevLett.107.230404</a>
  apa: Haller, E., Rabie, M., Mark, M., Danzl, J. G., Hart, R., Lauber, K., … Nägerl,
    H. (2011). Three-body correlation functions and recombination rates for bosons
    in three dimensions and one dimension. <i>Physical Review Letters</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.107.230404">https://doi.org/10.1103/PhysRevLett.107.230404</a>
  chicago: Haller, Elmar, Mahmoud Rabie, Manfred Mark, Johann G Danzl, Russell Hart,
    Katharina Lauber, Guido Pupillo, and Hanns Nägerl. “Three-Body Correlation Functions
    and Recombination Rates for Bosons in Three Dimensions and One Dimension.” <i>Physical
    Review Letters</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevLett.107.230404">https://doi.org/10.1103/PhysRevLett.107.230404</a>.
  ieee: E. Haller <i>et al.</i>, “Three-body correlation functions and recombination
    rates for bosons in three dimensions and one dimension,” <i>Physical Review Letters</i>,
    vol. 107, no. 23. American Physical Society, 2011.
  ista: Haller E, Rabie M, Mark M, Danzl JG, Hart R, Lauber K, Pupillo G, Nägerl H.
    2011. Three-body correlation functions and recombination rates for bosons in three
    dimensions and one dimension. Physical Review Letters. 107(23).
  mla: Haller, Elmar, et al. “Three-Body Correlation Functions and Recombination Rates
    for Bosons in Three Dimensions and One Dimension.” <i>Physical Review Letters</i>,
    vol. 107, no. 23, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.107.230404">10.1103/PhysRevLett.107.230404</a>.
  short: E. Haller, M. Rabie, M. Mark, J.G. Danzl, R. Hart, K. Lauber, G. Pupillo,
    H. Nägerl, Physical Review Letters 107 (2011).
date_created: 2018-12-11T11:49:54Z
date_published: 2011-12-02T00:00:00Z
date_updated: 2021-01-12T06:47:57Z
day: '02'
doi: 10.1103/PhysRevLett.107.230404
extern: '1'
external_id:
  arxiv:
  - '1107.4516'
intvolume: '       107'
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1107.4516
month: '12'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6335'
status: public
title: Three-body correlation functions and recombination rates for bosons in three
  dimensions and one dimension
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2011'
...
---
_id: '9648'
abstract:
- lang: eng
  text: In this paper, we establish a correspondence between the incremental algorithm
    for computing AT-models [8,9] and the one for computing persistent homology [6,14,15].
    We also present a decremental algorithm for computing AT-models that allows to
    extend the persistence computation to a wider setting. Finally, we show how to
    combine incremental and decremental techniques for persistent homology computation.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Rocio
  full_name: Gonzalez-Diaz, Rocio
  last_name: Gonzalez-Diaz
- first_name: Adrian
  full_name: Ion, Adrian
  id: 29F89302-F248-11E8-B48F-1D18A9856A87
  last_name: Ion
- first_name: Maria Jose
  full_name: Jimenez, Maria Jose
  last_name: Jimenez
- first_name: Regina
  full_name: Poyatos, Regina
  last_name: Poyatos
citation:
  ama: 'Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. Incremental-decremental algorithm
    for computing AT-models and persistent homology. In: <i>Computer Analysis of Images
    and Patterns</i>. Vol 6854. Springer Nature; 2011:286-293. doi:<a href="https://doi.org/10.1007/978-3-642-23672-3_35">10.1007/978-3-642-23672-3_35</a>'
  apa: 'Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., &#38; Poyatos, R. (2011). Incremental-decremental
    algorithm for computing AT-models and persistent homology. In <i>Computer Analysis
    of Images and Patterns</i> (Vol. 6854, pp. 286–293). Seville, Spain: Springer
    Nature. <a href="https://doi.org/10.1007/978-3-642-23672-3_35">https://doi.org/10.1007/978-3-642-23672-3_35</a>'
  chicago: Gonzalez-Diaz, Rocio, Adrian Ion, Maria Jose Jimenez, and Regina Poyatos.
    “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.”
    In <i>Computer Analysis of Images and Patterns</i>, 6854:286–93. Springer Nature,
    2011. <a href="https://doi.org/10.1007/978-3-642-23672-3_35">https://doi.org/10.1007/978-3-642-23672-3_35</a>.
  ieee: R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental
    algorithm for computing AT-models and persistent homology,” in <i>Computer Analysis
    of Images and Patterns</i>, Seville, Spain, 2011, vol. 6854, pp. 286–293.
  ista: 'Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental
    algorithm for computing AT-models and persistent homology. Computer Analysis of
    Images and Patterns. CAIP: International Conference on Computer Analysis of Images
    and Patterns, LNCS, vol. 6854, 286–293.'
  mla: Gonzalez-Diaz, Rocio, et al. “Incremental-Decremental Algorithm for Computing
    AT-Models and Persistent Homology.” <i>Computer Analysis of Images and Patterns</i>,
    vol. 6854, Springer Nature, 2011, pp. 286–93, doi:<a href="https://doi.org/10.1007/978-3-642-23672-3_35">10.1007/978-3-642-23672-3_35</a>.
  short: R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis
    of Images and Patterns, Springer Nature, 2011, pp. 286–293.
conference:
  end_date: 2011-08-31
  location: Seville, Spain
  name: 'CAIP: International Conference on Computer Analysis of Images and Patterns'
  start_date: 2011-08-29
date_created: 2021-07-11T22:01:19Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2026-06-18T19:56:17Z
day: '01'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.1007/978-3-642-23672-3_35
intvolume: '      6854'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://hdl.handle.net/11441/30766
month: '08'
oa: 1
oa_version: Published Version
page: 286-293
publication: Computer Analysis of Images and Patterns
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783642236716'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Incremental-decremental algorithm for computing AT-models and persistent homology
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6854
year: '2011'
...
---
_id: '9943'
abstract:
- lang: eng
  text: Segmentation is the process of partitioning digital images into meaningful
    regions. The analysis of biological high content images often requires segmentation
    as a first step. We propose ilastik as an easy-to-use tool which allows the user
    without expertise in image processing to perform segmentation and classification
    in a unified way. ilastik learns from labels provided by the user through a convenient
    mouse interface. Based on these labels, ilastik infers a problem specific segmentation.
    A random forest classifier is used in the learning step, in which each pixel's
    neighborhood is characterized by a set of generic (nonlinear) features. ilastik
    supports up to three spatial plus one spectral dimension and makes use of all
    dimensions in the feature calculation. ilastik provides realtime feedback that
    enables the user to interactively refine the segmentation result and hence further
    fine-tune the classifier. An uncertainty measure guides the user to ambiguous
    regions in the images. Real time performance is achieved by multi-threading which
    fully exploits the capabilities of modern multi-core machines. Once a classifier
    has been trained on a set of representative images, it can be exported and used
    to automatically process a very large number of images (e.g. using the CellProfiler
    pipeline). ilastik is an open source project and released under the BSD license
    at www.ilastik.org.
article_processing_charge: No
author:
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Christoph
  full_name: Straehle, Christoph
  last_name: Straehle
- first_name: Ullrich
  full_name: Köthe, Ullrich
  last_name: Köthe
- first_name: Fred A.
  full_name: Hamprecht, Fred A.
  last_name: Hamprecht
citation:
  ama: 'Sommer CM, Straehle C, Köthe U, Hamprecht FA. Ilastik: Interactive learning
    and segmentation toolkit. In: <i>2011 IEEE International Symposium on Biomedical
    Imaging: From Nano to Micro</i>. Institute of Electrical and Electronics Engineers;
    2011. doi:<a href="https://doi.org/10.1109/isbi.2011.5872394">10.1109/isbi.2011.5872394</a>'
  apa: 'Sommer, C. M., Straehle, C., Köthe, U., &#38; Hamprecht, F. A. (2011). Ilastik:
    Interactive learning and segmentation toolkit. In <i>2011 IEEE International Symposium
    on Biomedical Imaging: from Nano to Micro</i>. Chicago, Illinois, USA: Institute
    of Electrical and Electronics Engineers. <a href="https://doi.org/10.1109/isbi.2011.5872394">https://doi.org/10.1109/isbi.2011.5872394</a>'
  chicago: 'Sommer, Christoph M, Christoph Straehle, Ullrich Köthe, and Fred A. Hamprecht.
    “Ilastik: Interactive Learning and Segmentation Toolkit.” In <i>2011 IEEE International
    Symposium on Biomedical Imaging: From Nano to Micro</i>. Institute of Electrical
    and Electronics Engineers, 2011. <a href="https://doi.org/10.1109/isbi.2011.5872394">https://doi.org/10.1109/isbi.2011.5872394</a>.'
  ieee: 'C. M. Sommer, C. Straehle, U. Köthe, and F. A. Hamprecht, “Ilastik: Interactive
    learning and segmentation toolkit,” in <i>2011 IEEE International Symposium on
    Biomedical Imaging: from Nano to Micro</i>, Chicago, Illinois, USA, 2011.'
  ista: 'Sommer CM, Straehle C, Köthe U, Hamprecht FA. 2011. Ilastik: Interactive
    learning and segmentation toolkit. 2011 IEEE International Symposium on Biomedical
    Imaging: from Nano to Micro. ISBI: International Symposium on Biomedical Imaging.'
  mla: 'Sommer, Christoph M., et al. “Ilastik: Interactive Learning and Segmentation
    Toolkit.” <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano
    to Micro</i>, Institute of Electrical and Electronics Engineers, 2011, doi:<a
    href="https://doi.org/10.1109/isbi.2011.5872394">10.1109/isbi.2011.5872394</a>.'
  short: 'C.M. Sommer, C. Straehle, U. Köthe, F.A. Hamprecht, in:, 2011 IEEE International
    Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and
    Electronics Engineers, 2011.'
conference:
  end_date: 2011-04-02
  location: Chicago, Illinois, USA
  name: 'ISBI: International Symposium on Biomedical Imaging'
  start_date: 2011-03-30
date_created: 2021-08-19T11:49:58Z
date_published: 2011-06-09T00:00:00Z
date_updated: 2023-02-23T14:13:38Z
day: '09'
department:
- _id: Bio
doi: 10.1109/isbi.2011.5872394
extern: '1'
keyword:
- image segmentation
- biomedical imaging
- three dimensional displays
- neurons
- retina
- observers
- image color analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.researchgate.net/publication/224241106_Ilastik_Interactive_learning_and_segmentation_toolkit
month: '06'
oa: 1
oa_version: Preprint
publication: '2011 IEEE International Symposium on Biomedical Imaging: from Nano to
  Micro'
publication_identifier:
  eissn:
  - 1945-8452
  isbn:
  - 978-1-4244-4127-3
  issn:
  - 1945-7928
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
status: public
title: 'Ilastik: Interactive learning and segmentation toolkit'
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2011'
...
---
_id: '3965'
abstract:
- lang: eng
  text: The elevation function on a smoothly embedded 2-manifold in R-3 reflects the
    multiscale topography of cavities and protrusions as local maxima. The function
    has been useful in identifying coarse docking configurations for protein pairs.
    Transporting the concept from the smooth to the piecewise linear category, this
    paper describes an algorithm for finding all local maxima. While its worst-case
    running time is the same as of the algorithm used in prior work, its performance
    in practice is orders of magnitudes superior. We cast light on this improvement
    by relating the running time to the total absolute Gaussian curvature of the 2-manifold.
author:
- first_name: Bei
  full_name: Wang, Bei
  last_name: Wang
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Dmitriy
  full_name: Morozov, Dmitriy
  last_name: Morozov
citation:
  ama: Wang B, Edelsbrunner H, Morozov D. Computing elevation maxima by searching
    the Gauss sphere. <i>Journal of Experimental Algorithmics</i>. 2011;16(2.2):1-13.
    doi:<a href="https://doi.org/10.1145/1963190.1970375">10.1145/1963190.1970375</a>
  apa: Wang, B., Edelsbrunner, H., &#38; Morozov, D. (2011). Computing elevation maxima
    by searching the Gauss sphere. <i>Journal of Experimental Algorithmics</i>. ACM.
    <a href="https://doi.org/10.1145/1963190.1970375">https://doi.org/10.1145/1963190.1970375</a>
  chicago: Wang, Bei, Herbert Edelsbrunner, and Dmitriy Morozov. “Computing Elevation
    Maxima by Searching the Gauss Sphere.” <i>Journal of Experimental Algorithmics</i>.
    ACM, 2011. <a href="https://doi.org/10.1145/1963190.1970375">https://doi.org/10.1145/1963190.1970375</a>.
  ieee: B. Wang, H. Edelsbrunner, and D. Morozov, “Computing elevation maxima by searching
    the Gauss sphere,” <i>Journal of Experimental Algorithmics</i>, vol. 16, no. 2.2.
    ACM, pp. 1–13, 2011.
  ista: Wang B, Edelsbrunner H, Morozov D. 2011. Computing elevation maxima by searching
    the Gauss sphere. Journal of Experimental Algorithmics. 16(2.2), 1–13.
  mla: Wang, Bei, et al. “Computing Elevation Maxima by Searching the Gauss Sphere.”
    <i>Journal of Experimental Algorithmics</i>, vol. 16, no. 2.2, ACM, 2011, pp.
    1–13, doi:<a href="https://doi.org/10.1145/1963190.1970375">10.1145/1963190.1970375</a>.
  short: B. Wang, H. Edelsbrunner, D. Morozov, Journal of Experimental Algorithmics
    16 (2011) 1–13.
date_created: 2018-12-11T12:06:09Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2021-01-12T07:53:31Z
day: '01'
department:
- _id: HeEd
doi: 10.1145/1963190.1970375
intvolume: '        16'
issue: '2.2'
language:
- iso: eng
month: '05'
oa_version: None
page: 1 - 13
publication: Journal of Experimental Algorithmics
publication_status: published
publisher: ACM
publist_id: '2161'
quality_controlled: '1'
scopus_import: 1
status: public
title: Computing elevation maxima by searching the Gauss sphere
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2011'
...
---
_id: '531'
abstract:
- lang: eng
  text: Software transactional memories (STM) are described in the literature with
    assumptions of sequentially consistent program execution and atomicity of high
    level operations like read, write, and abort. However, in a realistic setting,
    processors use relaxed memory models to optimize hardware performance. Moreover,
    the atomicity of operations depends on the underlying hardware. This paper presents
    the first approach to verify STMs under relaxed memory models with atomicity of
    32 bit loads and stores, and read-modify-write operations. We describe RML, a
    simple language for expressing concurrent programs. We develop a semantics of
    RML parametrized by a relaxed memory model. We then present our tool, FOIL, which
    takes as input the RML description of an STM algorithm restricted to two threads
    and two variables, and the description of a memory model, and automatically determines
    the locations of fences, which if inserted, ensure the correctness of the restricted
    STM algorithm under the given memory model. We use FOIL to verify DSTM, TL2, and
    McRT STM under the memory models of sequential consistency, total store order,
    partial store order, and relaxed memory order for two threads and two variables.
    Finally, we extend the verification results for DSTM and TL2 to an arbitrary number
    of threads and variables by manually proving that the structural properties of
    STMs are satisfied at the hardware level of atomicity under the considered relaxed
    memory models.
article_processing_charge: No
article_type: original
author:
- first_name: Rachid
  full_name: Guerraoui, Rachid
  last_name: Guerraoui
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Vasu
  full_name: Singh, Vasu
  id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
  last_name: Singh
citation:
  ama: Guerraoui R, Henzinger TA, Singh V. Verification of STM on relaxed memory models.
    <i>Formal Methods in System Design</i>. 2011;39(3):297-331. doi:<a href="https://doi.org/10.1007/s10703-011-0131-3">10.1007/s10703-011-0131-3</a>
  apa: Guerraoui, R., Henzinger, T. A., &#38; Singh, V. (2011). Verification of STM
    on relaxed memory models. <i>Formal Methods in System Design</i>. Springer. <a
    href="https://doi.org/10.1007/s10703-011-0131-3">https://doi.org/10.1007/s10703-011-0131-3</a>
  chicago: Guerraoui, Rachid, Thomas A Henzinger, and Vasu Singh. “Verification of
    STM on Relaxed Memory Models.” <i>Formal Methods in System Design</i>. Springer,
    2011. <a href="https://doi.org/10.1007/s10703-011-0131-3">https://doi.org/10.1007/s10703-011-0131-3</a>.
  ieee: R. Guerraoui, T. A. Henzinger, and V. Singh, “Verification of STM on relaxed
    memory models,” <i>Formal Methods in System Design</i>, vol. 39, no. 3. Springer,
    pp. 297–331, 2011.
  ista: Guerraoui R, Henzinger TA, Singh V. 2011. Verification of STM on relaxed memory
    models. Formal Methods in System Design. 39(3), 297–331.
  mla: Guerraoui, Rachid, et al. “Verification of STM on Relaxed Memory Models.” <i>Formal
    Methods in System Design</i>, vol. 39, no. 3, Springer, 2011, pp. 297–331, doi:<a
    href="https://doi.org/10.1007/s10703-011-0131-3">10.1007/s10703-011-0131-3</a>.
  short: R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39
    (2011) 297–331.
corr_author: '1'
date_created: 2018-12-11T11:47:00Z
date_published: 2011-12-01T00:00:00Z
date_updated: 2025-09-30T09:23:08Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/s10703-011-0131-3
external_id:
  isi:
  - '000297596900004'
intvolume: '        39'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://infoscience.epfl.ch/record/178042/files/art3A10.10072Fs10703-011-0131-3.pdf
month: '12'
oa: 1
oa_version: Published Version
page: 297 - 331
publication: Formal Methods in System Design
publication_status: published
publisher: Springer
publist_id: '7288'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Verification of STM on relaxed memory models
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 39
year: '2011'
...
---
_id: '5379'
abstract:
- lang: eng
  text: Computing the winning set for Büchi objectives in alternating games on graphs
    is a central problem in computer aided verification with a large number of applications.
    The long standing best known upper bound for solving the problem is ̃O(n·m), where
    n is the number of vertices and m is the number of edges in the graph. We are
    the first to break the ̃O(n·m) boundary by presenting a new technique that reduces
    the running time to O(n2). This bound also leads to O(n2) time algorithms for
    computing the set of almost-sure winning vertices for Büchi objectives (1) in
    alternating games with probabilistic transitions (improving an earlier bound of
    O(n·m)), (2) in concurrent graph games with constant actions (improving an earlier
    bound of O(n3)), and (3) in Markov decision processes (improving for m > n4/3
    an earlier bound of O(min(m1.5, m·n2/3)). We also show that the same technique
    can be used to compute the maximal end-component decomposition of a graph in time
    O(n2), which is an improvement over earlier bounds for m > n4/3. Finally, we show
    how to maintain the winning set for Büchi objectives in alternating games under
    a sequence of edge insertions or a sequence of edge deletions in O(n) amortized
    time per operation. This is the first dynamic algorithm for this problem.
alternative_title:
- IST Austria Technical Report
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
citation:
  ama: Chatterjee K, Henzinger M. <i>An O(N2) Time Algorithm for Alternating Büchi
    Games</i>. IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0009">10.15479/AT:IST-2011-0009</a>
  apa: Chatterjee, K., &#38; Henzinger, M. (2011). <i>An O(n2) time algorithm for
    alternating Büchi games</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0009">https://doi.org/10.15479/AT:IST-2011-0009</a>
  chicago: Chatterjee, Krishnendu, and Monika Henzinger. <i>An O(N2) Time Algorithm
    for Alternating Büchi Games</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0009">https://doi.org/10.15479/AT:IST-2011-0009</a>.
  ieee: K. Chatterjee and M. Henzinger, <i>An O(n2) time algorithm for alternating
    Büchi games</i>. IST Austria, 2011.
  ista: Chatterjee K, Henzinger M. 2011. An O(n2) time algorithm for alternating Büchi
    games, IST Austria, 20p.
  mla: Chatterjee, Krishnendu, and Monika Henzinger. <i>An O(N2) Time Algorithm for
    Alternating Büchi Games</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0009">10.15479/AT:IST-2011-0009</a>.
  short: K. Chatterjee, M. Henzinger, An O(N2) Time Algorithm for Alternating Büchi
    Games, IST Austria, 2011.
date_created: 2018-12-12T11:38:59Z
date_published: 2011-07-11T00:00:00Z
date_updated: 2025-07-10T11:52:28Z
day: '11'
ddc:
- '000'
- '004'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0009
file:
- access_level: open_access
  checksum: 0b354264229045d982332fd2cb5b9a26
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:43Z
  date_updated: 2020-07-14T12:46:39Z
  file_id: '5504'
  file_name: IST-2011-0009_IST-2011-0009.pdf
  file_size: 388665
  relation: main_file
file_date_updated: 2020-07-14T12:46:39Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '20'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '15'
related_material:
  record:
  - id: '3165'
    relation: later_version
    status: public
status: public
title: An O(n2) time algorithm for alternating Büchi games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5380'
abstract:
- lang: eng
  text: 'We consider 2-player games played on a finite state space for an infinite
    number of rounds.  The games are concurrent: in each round, the two players (player
    1 and player 2) choose their moves independently and simultaneously; the current
    state and the two moves determine the successor state. We study concurrent games
    with ω-regular winning conditions specified as parity objectives.  We consider
    the qualitative analysis problems: the computation of the almost-sure and limit-sure
    winning set of states, where player 1 can ensure to win with probability 1 and
    with probability arbitrarily close to 1, respectively. In general the almost-sure
    and limit-sure winning strategies require both infinite-memory as well as infinite-precision
    (to describe probabilities). We study the bounded-rationality problem for qualitative
    analysis of concurrent parity games, where the strategy set for player 1 is restricted
    to bounded-resource strategies.  In terms of precision, strategies can be deterministic,
    uniform, finite-precision or infinite-precision;  and in terms of memory, strategies
    can be memoryless, finite-memory or infinite-memory. We present a precise and
    complete characterization of the qualitative winning sets for all combinations
    of classes of strategies. In particular, we show that uniform memoryless strategies
    are as powerful as finite-precision infinite-memory strategies, and infinite-precision
    memoryless strategies are as powerful as infinite-precision finite-memory strategies.  We
    show that the winning sets can be computed in O(n2d+3) time, where n is the size
    of the game structure and 2d is the number of priorities (or colors), and our
    algorithms are symbolic. The membership problem of whether a state belongs to
    a winning set can be decided in NP ∩ coNP. While this complexity is the same as
    for the simpler class of turn-based parity games, where in each state only one
    of the two players has a choice of moves, our algorithms,that are obtained by
    characterization of the winning sets as μ-calculus formulas, are considerably
    more involved than those for turn-based games.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: Chatterjee K. <i>Bounded Rationality in Concurrent Parity Games</i>. IST Austria;
    2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0008">10.15479/AT:IST-2011-0008</a>
  apa: Chatterjee, K. (2011). <i>Bounded rationality in concurrent parity games</i>.
    IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0008">https://doi.org/10.15479/AT:IST-2011-0008</a>
  chicago: Chatterjee, Krishnendu. <i>Bounded Rationality in Concurrent Parity Games</i>.
    IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0008">https://doi.org/10.15479/AT:IST-2011-0008</a>.
  ieee: K. Chatterjee, <i>Bounded rationality in concurrent parity games</i>. IST
    Austria, 2011.
  ista: Chatterjee K. 2011. Bounded rationality in concurrent parity games, IST Austria,
    53p.
  mla: Chatterjee, Krishnendu. <i>Bounded Rationality in Concurrent Parity Games</i>.
    IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0008">10.15479/AT:IST-2011-0008</a>.
  short: K. Chatterjee, Bounded Rationality in Concurrent Parity Games, IST Austria,
    2011.
date_created: 2018-12-12T11:39:00Z
date_published: 2011-07-11T00:00:00Z
date_updated: 2025-06-26T09:28:52Z
day: '11'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0008
file:
- access_level: open_access
  checksum: 0fd38186409be819a911c4990fa79d1f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:22Z
  date_updated: 2020-07-14T12:46:39Z
  file_id: '5544'
  file_name: IST-2011-0008_IST-2011-0008.pdf
  file_size: 500399
  relation: main_file
file_date_updated: 2020-07-14T12:46:39Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '53'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '16'
related_material:
  record:
  - id: '3338'
    relation: later_version
    status: public
status: public
title: Bounded rationality in concurrent parity games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5381'
abstract:
- lang: eng
  text: "In two-player finite-state stochastic games of partial obser- vation on graphs,
    in every state of the graph, the players simultaneously choose an action, and
    their joint actions determine a probability distri- bution over the successor
    states. The game is played for infinitely many rounds and thus the players construct
    an infinite path in the graph. We consider reachability objectives where the first
    player tries to ensure a target state to be visited almost-surely (i.e., with
    probability 1) or pos- itively (i.e., with positive probability), no matter the
    strategy of the second player.\r\n\r\nWe classify such games according to the
    information and to the power of randomization available to the players. On the
    basis of information, the game can be one-sided with either (a) player 1, or (b)
    player 2 having partial observation (and the other player has perfect observation),
    or two- sided with (c) both players having partial observation. On the basis of
    randomization, (a) the players may not be allowed to use randomization (pure strategies),
    or (b) they may choose a probability distribution over actions but the actual
    random choice is external and not visible to the player (actions invisible), or
    (c) they may use full randomization.\r\n\r\nOur main results for pure strategies
    are as follows: (1) For one-sided games with player 2 perfect observation we show
    that (in contrast to full randomized strategies) belief-based (subset-construction
    based) strate- gies are not sufficient, and present an exponential upper bound
    on mem- ory both for almost-sure and positive winning strategies; we show that
    the problem of deciding the existence of almost-sure and positive winning strategies
    for player 1 is EXPTIME-complete and present symbolic algo- rithms that avoid
    the explicit exponential construction. (2) For one-sided games with player 1 perfect
    observation we show that non-elementary memory is both necessary and sufficient
    for both almost-sure and posi- tive winning strategies. (3) We show that for the
    general (two-sided) case finite-memory strategies are sufficient for both positive
    and almost-sure winning, and at least non-elementary memory is required. We establish
    the equivalence of the almost-sure winning problems for pure strategies and for
    randomized strategies with actions invisible. Our equivalence re- sult exhibit
    serious flaws in previous results in the literature: we show a non-elementary
    memory lower bound for almost-sure winning whereas an exponential upper bound
    was previously claimed."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: 'Chatterjee K, Doyen L. <i>Partial-Observation Stochastic Games: How to Win
    When Belief Fails</i>. IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0007">10.15479/AT:IST-2011-0007</a>'
  apa: 'Chatterjee, K., &#38; Doyen, L. (2011). <i>Partial-observation stochastic
    games: How to win when belief fails</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0007">https://doi.org/10.15479/AT:IST-2011-0007</a>'
  chicago: 'Chatterjee, Krishnendu, and Laurent Doyen. <i>Partial-Observation Stochastic
    Games: How to Win When Belief Fails</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0007">https://doi.org/10.15479/AT:IST-2011-0007</a>.'
  ieee: 'K. Chatterjee and L. Doyen, <i>Partial-observation stochastic games: How
    to win when belief fails</i>. IST Austria, 2011.'
  ista: 'Chatterjee K, Doyen L. 2011. Partial-observation stochastic games: How to
    win when belief fails, IST Austria, 43p.'
  mla: 'Chatterjee, Krishnendu, and Laurent Doyen. <i>Partial-Observation Stochastic
    Games: How to Win When Belief Fails</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0007">10.15479/AT:IST-2011-0007</a>.'
  short: 'K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win
    When Belief Fails, IST Austria, 2011.'
date_created: 2018-12-12T11:39:00Z
date_published: 2011-07-05T00:00:00Z
date_updated: 2025-09-30T08:08:45Z
day: '05'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0007
file:
- access_level: open_access
  checksum: 06bf6dfc97f6006e3fd0e9a3f31bc961
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:27Z
  date_updated: 2020-07-14T12:46:39Z
  file_id: '5488'
  file_name: IST-2011-0007_IST-2011-0007.pdf
  file_size: 574055
  relation: main_file
file_date_updated: 2020-07-14T12:46:39Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '43'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '17'
related_material:
  record:
  - id: '1903'
    relation: later_version
    status: public
  - id: '2211'
    relation: later_version
    status: public
  - id: '2955'
    relation: later_version
    status: public
status: public
title: 'Partial-observation stochastic games: How to win when belief fails'
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '2975'
abstract:
- lang: eng
  text: "Zero-knowledge proofs of knowledge (ZK-PoK) for discrete logarithms and related
    problems are indispensable for practical cryptographic protocols. Recently, Camenisch,
    Kiayias, and Yung provided a specification language (the CKY-language) for such
    protocols which allows for a modular design and protocol analysis: for every zero-knowledge
    proof specified in this language, protocol designers are ensured that there exists
    an efficient protocol which indeed proves the specified statement.\n\nHowever,
    the protocols resulting from their compilation techniques only satisfy the classical
    notion of ZK-PoK, which is not retained are when they used as building blocks
    for higher-level applications or composed with other protocols.\nThis problem
    can be tackled by moving to the Universal Composability (UC) framework, which
    guarantees retention of security when composing protocols in arbitrary ways.  \nWhile
    there exist generic transformations from $\\Sigma$-protocols to UC-secure protocols,
    these transformation are often too inefficient for practice.\n \nIn this paper
    we introduce a specification language akin to the CKY-language and a compiler
    such that the resulting protocols are UC-secure and efficient. \nTo this end,
    we propose an extension of the UC-framework addressing the \nissue that UC-secure
    zero-knowledge proofs are by definition proofs of knowledge, and state a special
    composition theorem which allows one to use the weaker -- but more efficient and
    often sufficient -- notion of proofs of membership in the UC-framework.  \nWe
    believe that our contributions enable the design of practically efficient protocols
    that are UC-secure and thus themselves can be used as building blocks."
acknowledgement: This work was in part funded by the Swiss Hasler Foundation, and
  the EU FP7 grants 216483 and 216499, as well as by the NSF grant CNS-0716690.
alternative_title:
- LNCS
author:
- first_name: Jan
  full_name: Camenisch, Jan
  last_name: Camenisch
- first_name: Stephan
  full_name: Stephan Krenn
  id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
  last_name: Krenn
  orcid: 0000-0003-2835-9093
- first_name: Victor
  full_name: Shoup, Victor
  last_name: Shoup
citation:
  ama: 'Camenisch J, Krenn S, Shoup V. A Framework for Practical Universally Composable
    Zero-Knowledge Protocols. In: Lee D, Wang X, eds. Vol 7073. Springer; 2011:449-467.
    doi:<a href="https://doi.org/10.1007/978-3-642-25385-0">10.1007/978-3-642-25385-0</a>'
  apa: 'Camenisch, J., Krenn, S., &#38; Shoup, V. (2011). A Framework for Practical
    Universally Composable Zero-Knowledge Protocols. In D. Lee &#38; X. Wang (Eds.)
    (Vol. 7073, pp. 449–467). Presented at the ASIACRYPT: Theory and Application of
    Cryptology and Information Security, Springer. <a href="https://doi.org/10.1007/978-3-642-25385-0">https://doi.org/10.1007/978-3-642-25385-0</a>'
  chicago: Camenisch, Jan, Stephan Krenn, and Victor Shoup. “A Framework for Practical
    Universally Composable Zero-Knowledge Protocols.” edited by Dong Lee and Xiaoyun
    Wang, 7073:449–67. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-25385-0">https://doi.org/10.1007/978-3-642-25385-0</a>.
  ieee: 'J. Camenisch, S. Krenn, and V. Shoup, “A Framework for Practical Universally
    Composable Zero-Knowledge Protocols,” presented at the ASIACRYPT: Theory and Application
    of Cryptology and Information Security, 2011, vol. 7073, pp. 449–467.'
  ista: 'Camenisch J, Krenn S, Shoup V. 2011. A Framework for Practical Universally
    Composable Zero-Knowledge Protocols. ASIACRYPT: Theory and Application of Cryptology
    and Information Security, LNCS, vol. 7073, 449–467.'
  mla: Camenisch, Jan, et al. <i>A Framework for Practical Universally Composable
    Zero-Knowledge Protocols</i>. Edited by Dong Lee and Xiaoyun Wang, vol. 7073,
    Springer, 2011, pp. 449–67, doi:<a href="https://doi.org/10.1007/978-3-642-25385-0">10.1007/978-3-642-25385-0</a>.
  short: J. Camenisch, S. Krenn, V. Shoup, in:, D. Lee, X. Wang (Eds.), Springer,
    2011, pp. 449–467.
conference:
  name: 'ASIACRYPT: Theory and Application of Cryptology and Information Security'
date_created: 2018-12-11T12:00:39Z
date_published: 2011-11-21T00:00:00Z
date_updated: 2021-01-12T07:40:11Z
day: '21'
doi: 10.1007/978-3-642-25385-0
editor:
- first_name: Dong
  full_name: Lee, Dong Hoon
  last_name: Lee
- first_name: Xiaoyun
  full_name: Wang, Xiaoyun
  last_name: Wang
extern: 1
intvolume: '      7073'
main_file_link:
- open_access: '0'
  url: http://eprint.iacr.org/2011/228.pdf
month: '11'
page: 449 - 467
publication_status: published
publisher: Springer
publist_id: '3728'
quality_controlled: 0
status: public
title: A Framework for Practical Universally Composable Zero-Knowledge Protocols
type: conference
volume: 7073
year: '2011'
...
---
_id: '3086'
abstract:
- lang: eng
  text: PIN-FORMED (PIN)-dependent auxin transport is essential for plant development
    and its modulation in response to the environment or endogenous signals. A NON-PHOTOTROPIC
    HYPOCOTYL 3 (NPH3)-like protein, MACCHI-BOU 4 (MAB4), has been shown to control
    PIN1 localization during organ formation, but its contribution is limited. The
    Arabidopsis genome contains four genes, MAB4/ENP/NPY1-LIKE1 (MEL1), MEL2, MEL3
    and MEL4, highly homologous to MAB4. Genetic analysis disclosed functional redundancy
    between MAB4 and MEL genes in regulation of not only organ formation but also
    of root gravitropism, revealing that NPH3 family proteins have a wider range of
    functions than previously suspected. Multiple mutants showed severe reduction
    in PIN abundance and PIN polar localization, leading to defective expression of
    an auxin responsive marker DR5rev::GFP. Pharmacological analyses and fluorescence
    recovery after photo-bleaching experiments showed that mel mutations increase
    PIN2 internalization from the plasma membrane, but affect neither intracellular
    PIN2 trafficking nor PIN2 lateral diffusion at the plasma membrane. Notably, all
    MAB4 subfamily proteins show polar localization at the cell periphery in plants.
    The MAB4 polarity was almost identical to PIN polarity. Our results suggest that
    the MAB4 subfamily proteins specifically retain PIN proteins in a polarized manner
    at the plasma membrane, thus controlling directional auxin transport and plant
    development.
author:
- first_name: Masahiko
  full_name: Furutani, Masahiko
  last_name: Furutani
- first_name: Norihito
  full_name: Sakamoto, Norihito
  last_name: Sakamoto
- first_name: Shuhei
  full_name: Yoshida, Shuhei
  last_name: Yoshida
- first_name: Takahito
  full_name: Kajiwara, Takahito
  last_name: Kajiwara
- first_name: Hélène
  full_name: Robert, Hélène S
  last_name: Robert
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Masao
  full_name: Tasaka, Masao
  last_name: Tasaka
citation:
  ama: Furutani M, Sakamoto N, Yoshida S, et al. Polar localized NPH3-like proteins
    regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers. <i>Development</i>.
    2011;138(10):2069-2078. doi:<a href="https://doi.org/10.1242/dev.057745">10.1242/dev.057745</a>
  apa: Furutani, M., Sakamoto, N., Yoshida, S., Kajiwara, T., Robert, H., Friml, J.,
    &#38; Tasaka, M. (2011). Polar localized NPH3-like proteins regulate polarity
    and endocytosis of PIN-FORMED auxin efflux carriers. <i>Development</i>. Company
    of Biologists. <a href="https://doi.org/10.1242/dev.057745">https://doi.org/10.1242/dev.057745</a>
  chicago: Furutani, Masahiko, Norihito Sakamoto, Shuhei Yoshida, Takahito Kajiwara,
    Hélène Robert, Jiří Friml, and Masao Tasaka. “Polar Localized NPH3-like Proteins
    Regulate Polarity and Endocytosis of PIN-FORMED Auxin Efflux Carriers.” <i>Development</i>.
    Company of Biologists, 2011. <a href="https://doi.org/10.1242/dev.057745">https://doi.org/10.1242/dev.057745</a>.
  ieee: M. Furutani <i>et al.</i>, “Polar localized NPH3-like proteins regulate polarity
    and endocytosis of PIN-FORMED auxin efflux carriers,” <i>Development</i>, vol.
    138, no. 10. Company of Biologists, pp. 2069–2078, 2011.
  ista: Furutani M, Sakamoto N, Yoshida S, Kajiwara T, Robert H, Friml J, Tasaka M.
    2011. Polar localized NPH3-like proteins regulate polarity and endocytosis of
    PIN-FORMED auxin efflux carriers. Development. 138(10), 2069–2078.
  mla: Furutani, Masahiko, et al. “Polar Localized NPH3-like Proteins Regulate Polarity
    and Endocytosis of PIN-FORMED Auxin Efflux Carriers.” <i>Development</i>, vol.
    138, no. 10, Company of Biologists, 2011, pp. 2069–78, doi:<a href="https://doi.org/10.1242/dev.057745">10.1242/dev.057745</a>.
  short: M. Furutani, N. Sakamoto, S. Yoshida, T. Kajiwara, H. Robert, J. Friml, M.
    Tasaka, Development 138 (2011) 2069–2078.
date_created: 2018-12-11T12:01:17Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2021-01-12T07:40:57Z
day: '01'
doi: 10.1242/dev.057745
extern: 1
intvolume: '       138'
issue: '10'
month: '05'
page: 2069 - 2078
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '3615'
quality_controlled: 0
status: public
title: Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED
  auxin efflux carriers
type: journal_article
volume: 138
year: '2011'
...
---
_id: '3089'
abstract:
- lang: eng
  text: The phytohormone auxin is an important determinant of plant development. Directional
    auxin flow within tissues depends on polar localization of PIN auxin transporters.
    To explore regulation of PIN-mediated auxin transport, we screened for suppressors
    of PIN1 overexpression (supo) and identified an inositol polyphosphate 1-phosphatase
    mutant (supo1), with elevated inositol trisphosphate (InsP 3) and cytosolic Ca
    2+ levels. Pharmacological and genetic increases in InsP 3 or Ca 2+ levels also
    suppressed the PIN1 gain-of-function phenotypes and caused defects in basal PIN
    localization, auxin transport and auxin-mediated development. In contrast, the
    reductions in InsP 3 levels and Ca 2+ signaling antagonized the effects of the
    supo1 mutation and disrupted preferentially apical PIN localization. InsP 3 and
    Ca 2+ are evolutionarily conserved second messengers involved in various cellular
    functions, particularly stress responses. Our findings implicate them as modifiers
    of cell polarity and polar auxin transport, and highlight a potential integration
    point through which Ca 2+ signaling-related stimuli could influence auxin-mediated
    development.
author:
- first_name: Jing
  full_name: Zhang, Jing
  last_name: Zhang
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Philip
  full_name: Brewer, Philip B
  last_name: Brewer
- first_name: Marta
  full_name: Michniewicz, Marta
  last_name: Michniewicz
- first_name: Peter
  full_name: Peter Grones
  id: 399876EC-F248-11E8-B48F-1D18A9856A87
  last_name: Grones
- first_name: Jürgen
  full_name: Kleine-Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Christian
  full_name: Löfke, Christian
  last_name: Löfke
- first_name: Thomas
  full_name: Teichmann, Thomas
  last_name: Teichmann
- first_name: Agnieszka
  full_name: Bielach, Agnieszka
  last_name: Bielach
- first_name: Bernard
  full_name: Cannoot, Bernard
  last_name: Cannoot
- first_name: Klára
  full_name: Hoyerová, Klára
  last_name: Hoyerová
- first_name: Xu
  full_name: Xu Chen
  id: 4E5ADCAA-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Hong
  full_name: Xue, Hong-Wei
  last_name: Xue
- first_name: Eva
  full_name: Eva Benková
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang J, Vanneste S, Brewer P, et al. Inositol trisphosphate-induced ca^2+
    signaling modulates auxin transport and pin polarity. <i>Developmental Cell</i>.
    2011;20(6):855-866. doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.013">10.1016/j.devcel.2011.05.013</a>
  apa: Zhang, J., Vanneste, S., Brewer, P., Michniewicz, M., Grones, P., Kleine Vehn,
    J., … Friml, J. (2011). Inositol trisphosphate-induced ca^2+ signaling modulates
    auxin transport and pin polarity. <i>Developmental Cell</i>. Cell Press. <a href="https://doi.org/10.1016/j.devcel.2011.05.013">https://doi.org/10.1016/j.devcel.2011.05.013</a>
  chicago: Zhang, Jing, Steffen Vanneste, Philip Brewer, Marta Michniewicz, Peter
    Grones, Jürgen Kleine Vehn, Christian Löfke, et al. “Inositol Trisphosphate-Induced
    Ca^2+ Signaling Modulates Auxin Transport and Pin Polarity.” <i>Developmental
    Cell</i>. Cell Press, 2011. <a href="https://doi.org/10.1016/j.devcel.2011.05.013">https://doi.org/10.1016/j.devcel.2011.05.013</a>.
  ieee: J. Zhang <i>et al.</i>, “Inositol trisphosphate-induced ca^2+ signaling modulates
    auxin transport and pin polarity,” <i>Developmental Cell</i>, vol. 20, no. 6.
    Cell Press, pp. 855–866, 2011.
  ista: Zhang J, Vanneste S, Brewer P, Michniewicz M, Grones P, Kleine Vehn J, Löfke
    C, Teichmann T, Bielach A, Cannoot B, Hoyerová K, Chen X, Xue H, Benková E, Zažímalová
    E, Friml J. 2011. Inositol trisphosphate-induced ca^2+ signaling modulates auxin
    transport and pin polarity. Developmental Cell. 20(6), 855–866.
  mla: Zhang, Jing, et al. “Inositol Trisphosphate-Induced Ca^2+ Signaling Modulates
    Auxin Transport and Pin Polarity.” <i>Developmental Cell</i>, vol. 20, no. 6,
    Cell Press, 2011, pp. 855–66, doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.013">10.1016/j.devcel.2011.05.013</a>.
  short: J. Zhang, S. Vanneste, P. Brewer, M. Michniewicz, P. Grones, J. Kleine Vehn,
    C. Löfke, T. Teichmann, A. Bielach, B. Cannoot, K. Hoyerová, X. Chen, H. Xue,
    E. Benková, E. Zažímalová, J. Friml, Developmental Cell 20 (2011) 855–866.
date_created: 2018-12-11T12:01:18Z
date_published: 2011-06-14T00:00:00Z
date_updated: 2021-01-12T07:40:58Z
day: '14'
doi: 10.1016/j.devcel.2011.05.013
extern: 1
intvolume: '        20'
issue: '6'
month: '06'
page: 855 - 866
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '3612'
quality_controlled: 0
status: public
title: Inositol trisphosphate-induced ca^2+ signaling modulates auxin transport and
  pin polarity
type: journal_article
volume: 20
year: '2011'
...
---
_id: '3090'
abstract:
- lang: eng
  text: The polarized transport of the phytohormone auxin [1], which is crucial for
    the regulation of different stages of plant development [2, 3], depends on the
    asymmetric plasma membrane distribution of the PIN-FORMED (PIN) auxin efflux carriers
    [4, 5]. The PIN polar localization results from clathrin-mediated endocytosis
    (CME) from the plasma membrane and subsequent polar recycling [6]. The Arabidopsis
    genome encodes two groups of dynamin-related proteins (DRPs) that show homology
    to mammalian dynamin - a protein required for fission of endocytic vesicles during
    CME [7, 8]. Here we show by coimmunoprecipitation (coIP), bimolecular fluorescence
    complementation (BiFC), and Förster resonance energy transfer (FRET) that members
    of the DRP1 group closely associate with PIN proteins at the cell plate. Localization
    and phenotypic analysis of novel drp1 mutants revealed a requirement for DRP1
    function in correct PIN distribution and in auxin-mediated development. We propose
    that rapid and specific internalization of PIN proteins mediated by the DRP1 proteins
    and the associated CME machinery from the cell plate membranes during cytokinesis
    is an important mechanism for proper polar PIN positioning in interphase cells.
author:
- first_name: Jozef
  full_name: Mravec, Jozef
  last_name: Mravec
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Na
  full_name: Li, Na
  last_name: Li
- first_name: Sjef
  full_name: Boeren, Sjef
  last_name: Boeren
- first_name: Rumyana
  full_name: Karlova, Rumyana
  last_name: Karlova
- first_name: Saeko
  full_name: Kitakura, Saeko
  last_name: Kitakura
- first_name: Markéta
  full_name: Pařezová, Markéta
  last_name: Pařezová
- first_name: Satoshi
  full_name: Naramoto, Satoshi
  last_name: Naramoto
- first_name: Thomasz
  full_name: Nodzyński, Thomasz
  last_name: Nodzyński
- first_name: Pankaj
  full_name: Dhonukshe, Pankaj
  last_name: Dhonukshe
- first_name: Sebastian
  full_name: Bednarek, Sebastian Y
  last_name: Bednarek
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Sacco
  full_name: De Vries, Sacco
  last_name: De Vries
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Mravec J, Petrášek J, Li N, et al. Cell plate restricted association of DRP1A
    and PIN proteins is required for cell polarity establishment in arabidopsis. <i>Current
    Biology</i>. 2011;21(12):1055-1060. doi:<a href="https://doi.org/10.1016/j.cub.2011.05.018">10.1016/j.cub.2011.05.018</a>
  apa: Mravec, J., Petrášek, J., Li, N., Boeren, S., Karlova, R., Kitakura, S., …
    Friml, J. (2011). Cell plate restricted association of DRP1A and PIN proteins
    is required for cell polarity establishment in arabidopsis. <i>Current Biology</i>.
    Cell Press. <a href="https://doi.org/10.1016/j.cub.2011.05.018">https://doi.org/10.1016/j.cub.2011.05.018</a>
  chicago: Mravec, Jozef, Jan Petrášek, Na Li, Sjef Boeren, Rumyana Karlova, Saeko
    Kitakura, Markéta Pařezová, et al. “Cell Plate Restricted Association of DRP1A
    and PIN Proteins Is Required for Cell Polarity Establishment in Arabidopsis.”
    <i>Current Biology</i>. Cell Press, 2011. <a href="https://doi.org/10.1016/j.cub.2011.05.018">https://doi.org/10.1016/j.cub.2011.05.018</a>.
  ieee: J. Mravec <i>et al.</i>, “Cell plate restricted association of DRP1A and PIN
    proteins is required for cell polarity establishment in arabidopsis,” <i>Current
    Biology</i>, vol. 21, no. 12. Cell Press, pp. 1055–1060, 2011.
  ista: Mravec J, Petrášek J, Li N, Boeren S, Karlova R, Kitakura S, Pařezová M, Naramoto
    S, Nodzyński T, Dhonukshe P, Bednarek S, Zažímalová E, De Vries S, Friml J. 2011.
    Cell plate restricted association of DRP1A and PIN proteins is required for cell
    polarity establishment in arabidopsis. Current Biology. 21(12), 1055–1060.
  mla: Mravec, Jozef, et al. “Cell Plate Restricted Association of DRP1A and PIN Proteins
    Is Required for Cell Polarity Establishment in Arabidopsis.” <i>Current Biology</i>,
    vol. 21, no. 12, Cell Press, 2011, pp. 1055–60, doi:<a href="https://doi.org/10.1016/j.cub.2011.05.018">10.1016/j.cub.2011.05.018</a>.
  short: J. Mravec, J. Petrášek, N. Li, S. Boeren, R. Karlova, S. Kitakura, M. Pařezová,
    S. Naramoto, T. Nodzyński, P. Dhonukshe, S. Bednarek, E. Zažímalová, S. De Vries,
    J. Friml, Current Biology 21 (2011) 1055–1060.
date_created: 2018-12-11T12:01:19Z
date_published: 2011-06-21T00:00:00Z
date_updated: 2021-01-12T07:40:59Z
day: '21'
doi: 10.1016/j.cub.2011.05.018
extern: 1
intvolume: '        21'
issue: '12'
month: '06'
page: 1055 - 1060
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '3611'
quality_controlled: 0
status: public
title: Cell plate restricted association of DRP1A and PIN proteins is required for
  cell polarity establishment in arabidopsis
type: journal_article
volume: 21
year: '2011'
...
---
_id: '3101'
abstract:
- lang: eng
  text: Subcellular trafficking is required for a multitude of functions in eukaryotic
    cells. It involves regulation of cargo sorting, vesicle formation, trafficking
    and fusion processes at multiple levels. Adaptor protein (AP) complexes are key
    regulators of cargo sorting into vesicles in yeast and mammals but their existence
    and function in plants have not been demonstrated. Here we report the identification
    of the protein-affected trafficking 4 (pat4) mutant defective in the putative
    δ subunit of the AP-3 complex. pat4 and pat2, a mutant isolated from the same
    GFP imaging-based forward genetic screen that lacks a functional putative AP-3
    β, as well as dominant negative AP-3 μ transgenic lines display undistinguishable
    phenotypes characterized by largely normal morphology and development, but strong
    intracellular accumulation of membrane proteins in aberrant vacuolar structures.
    All mutants are defective in morphology and function of lytic and protein storage
    vacuoles (PSVs) but show normal sorting of reserve proteins to PSVs. Immunoprecipitation
    experiments and genetic studies revealed tight functional and physical associations
    of putative AP-3 β and AP-3 δ subunits. Furthermore, both proteins are closely
    linked with putative AP-3 μ and σ subunits and several components of the clathrin
    and dynamin machineries. Taken together, these results demonstrate that AP complexes,
    similar to those in other eukaryotes, exist in plants, and that AP-3 plays a specific
    role in the regulation of biogenesis and function of vacuoles in plant cells.
    © 2011 IBCB, SIBS, CAS All rights reserved
author:
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Elena
  full_name: Feraru, Elena
  last_name: Feraru
- first_name: Barbara
  full_name: Möller, Barbara
  last_name: Möller
- first_name: Inhwan
  full_name: Hwang, Inhwan
  last_name: Hwang
- first_name: Mugurel
  full_name: Feraru, Mugurel I
  last_name: Feraru
- first_name: Jürgen
  full_name: Kleine-Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Dolf
  full_name: Weijers, Dolf
  last_name: Weijers
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zwiewka M, Feraru E, Möller B, et al. The AP 3 adaptor complex is required
    for vacuolar function in Arabidopsis. <i>Cell Research</i>. 2011;21(12):1711-1722.
    doi:<a href="https://doi.org/10.1038/cr.2011.99">10.1038/cr.2011.99</a>
  apa: Zwiewka, M., Feraru, E., Möller, B., Hwang, I., Feraru, M., Kleine Vehn, J.,
    … Friml, J. (2011). The AP 3 adaptor complex is required for vacuolar function
    in Arabidopsis. <i>Cell Research</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/cr.2011.99">https://doi.org/10.1038/cr.2011.99</a>
  chicago: Zwiewka, Marta, Elena Feraru, Barbara Möller, Inhwan Hwang, Mugurel Feraru,
    Jürgen Kleine Vehn, Dolf Weijers, and Jiří Friml. “The AP 3 Adaptor Complex Is
    Required for Vacuolar Function in Arabidopsis.” <i>Cell Research</i>. Nature Publishing
    Group, 2011. <a href="https://doi.org/10.1038/cr.2011.99">https://doi.org/10.1038/cr.2011.99</a>.
  ieee: M. Zwiewka <i>et al.</i>, “The AP 3 adaptor complex is required for vacuolar
    function in Arabidopsis,” <i>Cell Research</i>, vol. 21, no. 12. Nature Publishing
    Group, pp. 1711–1722, 2011.
  ista: Zwiewka M, Feraru E, Möller B, Hwang I, Feraru M, Kleine Vehn J, Weijers D,
    Friml J. 2011. The AP 3 adaptor complex is required for vacuolar function in Arabidopsis.
    Cell Research. 21(12), 1711–1722.
  mla: Zwiewka, Marta, et al. “The AP 3 Adaptor Complex Is Required for Vacuolar Function
    in Arabidopsis.” <i>Cell Research</i>, vol. 21, no. 12, Nature Publishing Group,
    2011, pp. 1711–22, doi:<a href="https://doi.org/10.1038/cr.2011.99">10.1038/cr.2011.99</a>.
  short: M. Zwiewka, E. Feraru, B. Möller, I. Hwang, M. Feraru, J. Kleine Vehn, D.
    Weijers, J. Friml, Cell Research 21 (2011) 1711–1722.
date_created: 2018-12-11T12:01:23Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:41:04Z
day: '01'
doi: 10.1038/cr.2011.99
extern: 1
intvolume: '        21'
issue: '12'
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3357998/
month: '01'
oa: 1
page: 1711 - 1722
publication: Cell Research
publication_status: published
publisher: Nature Publishing Group
publist_id: '3597'
quality_controlled: 0
status: public
title: The AP 3 adaptor complex is required for vacuolar function in Arabidopsis
type: journal_article
volume: 21
year: '2011'
...
---
_id: '3138'
abstract:
- lang: eng
  text: Hippocampal sharp waves (SPWs) and associated fast (&quot;ripple&quot;) oscillations
    (SPW-Rs) in the CA1 region are among the most synchronous physiological patterns
    in the mammalian brain. Using two-dimensional arrays of electrodes for recording
    local field potentials and unit discharges in freely moving rats, we studied the
    emergence of ripple oscillations (140-220 Hz) and compared their origin and cellular-synaptic
    mechanisms with fast gamma oscillations (90-140 Hz). We show that (1) hippocampal
    SPW-Rs and fast gamma oscillations are quantitatively distinct patterns but involve
    the same networks and share similar mechanisms; (2) both the frequency and magnitude
    of fast oscillations are positively correlated with the magnitude of SPWs; (3)
    during both ripples and fast gamma oscillations the frequency of network oscillation
    is higher in CA1 than in CA3; and (4) the emergence of CA3 population bursts,
    a prerequisite for SPW-Rs, is biased by activity patterns in the dentate gyrus
    and entorhinal cortex, with the highest probability of ripples associated with
    an &quot;optimum&quot; level of dentate gamma power. We hypothesize that each
    hippocampal subnetwork possesses distinct resonant properties, tuned by the magnitude
    of the excitatory drive.
author:
- first_name: David
  full_name: Sullivan, David W
  last_name: Sullivan
- first_name: Jozsef L
  full_name: Jozsef Csicsvari
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: Kenji
  full_name: Mizuseki, Kenji
  last_name: Mizuseki
- first_name: Sean
  full_name: Montgomery, Sean M
  last_name: Montgomery
- first_name: Kamran
  full_name: Diba, Kamran
  last_name: Diba
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: Sullivan D, Csicsvari JL, Mizuseki K, Montgomery S, Diba K, Buzsáki G. Relationships
    between hippocampal sharp waves ripples and fast gamma oscillation Influence of
    dentate and entorhinal cortical activity. <i>Journal of Neuroscience</i>. 2011;31(23):8605-8616.
    doi:<a href="https://doi.org/10.1523/JNEUROSCI.0294-11.2011">10.1523/JNEUROSCI.0294-11.2011</a>
  apa: Sullivan, D., Csicsvari, J. L., Mizuseki, K., Montgomery, S., Diba, K., &#38;
    Buzsáki, G. (2011). Relationships between hippocampal sharp waves ripples and
    fast gamma oscillation Influence of dentate and entorhinal cortical activity.
    <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href="https://doi.org/10.1523/JNEUROSCI.0294-11.2011">https://doi.org/10.1523/JNEUROSCI.0294-11.2011</a>
  chicago: Sullivan, David, Jozsef L Csicsvari, Kenji Mizuseki, Sean Montgomery, Kamran
    Diba, and György Buzsáki. “Relationships between Hippocampal Sharp Waves Ripples
    and Fast Gamma Oscillation Influence of Dentate and Entorhinal Cortical Activity.”
    <i>Journal of Neuroscience</i>. Society for Neuroscience, 2011. <a href="https://doi.org/10.1523/JNEUROSCI.0294-11.2011">https://doi.org/10.1523/JNEUROSCI.0294-11.2011</a>.
  ieee: D. Sullivan, J. L. Csicsvari, K. Mizuseki, S. Montgomery, K. Diba, and G.
    Buzsáki, “Relationships between hippocampal sharp waves ripples and fast gamma
    oscillation Influence of dentate and entorhinal cortical activity,” <i>Journal
    of Neuroscience</i>, vol. 31, no. 23. Society for Neuroscience, pp. 8605–8616,
    2011.
  ista: Sullivan D, Csicsvari JL, Mizuseki K, Montgomery S, Diba K, Buzsáki G. 2011.
    Relationships between hippocampal sharp waves ripples and fast gamma oscillation
    Influence of dentate and entorhinal cortical activity. Journal of Neuroscience.
    31(23), 8605–8616.
  mla: Sullivan, David, et al. “Relationships between Hippocampal Sharp Waves Ripples
    and Fast Gamma Oscillation Influence of Dentate and Entorhinal Cortical Activity.”
    <i>Journal of Neuroscience</i>, vol. 31, no. 23, Society for Neuroscience, 2011,
    pp. 8605–16, doi:<a href="https://doi.org/10.1523/JNEUROSCI.0294-11.2011">10.1523/JNEUROSCI.0294-11.2011</a>.
  short: D. Sullivan, J.L. Csicsvari, K. Mizuseki, S. Montgomery, K. Diba, G. Buzsáki,
    Journal of Neuroscience 31 (2011) 8605–8616.
date_created: 2018-12-11T12:01:36Z
date_published: 2011-06-08T00:00:00Z
date_updated: 2021-01-12T07:41:19Z
day: '08'
doi: 10.1523/JNEUROSCI.0294-11.2011
extern: 1
intvolume: '        31'
issue: '23'
month: '06'
page: 8605 - 8616
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '3559'
quality_controlled: 0
status: public
title: Relationships between hippocampal sharp waves ripples and fast gamma oscillation
  Influence of dentate and entorhinal cortical activity
type: journal_article
volume: 31
year: '2011'
...
---
_id: '3204'
abstract:
- lang: eng
  text: 'We introduce a new class of functions that can be minimized in polynomial
    time in the value oracle model. These are functions f satisfying f(x) + f(y) ≥
    f(x ∏ y) + f(x ∐ y) where the domain of each variable x i corresponds to nodes
    of a rooted binary tree, and operations ∏,∐ are defined with respect to this tree.
    Special cases include previously studied L-convex and bisubmodular functions,
    which can be obtained with particular choices of trees. We present a polynomial-time
    algorithm for minimizing functions in the new class. It combines Murota''s steepest
    descent algorithm for L-convex functions with bisubmodular minimization algorithms. '
alternative_title:
- LNCS
author:
- first_name: Vladimir
  full_name: Vladimir Kolmogorov
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: 'Kolmogorov V. Submodularity on a tree: Unifying Submodularity on a tree: Unifying
    L-convex and bisubmodular functions convex and bisubmodular functions. In: Vol
    6907. Springer; 2011:400-411. doi:<a href="https://doi.org/10.1007/978-3-642-22993-0_37">10.1007/978-3-642-22993-0_37</a>'
  apa: 'Kolmogorov, V. (2011). Submodularity on a tree: Unifying Submodularity on
    a tree: Unifying L-convex and bisubmodular functions convex and bisubmodular functions
    (Vol. 6907, pp. 400–411). Presented at the MFCS: Mathematical Foundations of Computer
    Science, Springer. <a href="https://doi.org/10.1007/978-3-642-22993-0_37">https://doi.org/10.1007/978-3-642-22993-0_37</a>'
  chicago: 'Kolmogorov, Vladimir. “Submodularity on a Tree: Unifying Submodularity
    on a Tree: Unifying L-Convex and Bisubmodular Functions Convex and Bisubmodular
    Functions,” 6907:400–411. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-22993-0_37">https://doi.org/10.1007/978-3-642-22993-0_37</a>.'
  ieee: 'V. Kolmogorov, “Submodularity on a tree: Unifying Submodularity on a tree:
    Unifying L-convex and bisubmodular functions convex and bisubmodular functions,”
    presented at the MFCS: Mathematical Foundations of Computer Science, 2011, vol.
    6907, pp. 400–411.'
  ista: 'Kolmogorov V. 2011. Submodularity on a tree: Unifying Submodularity on a
    tree: Unifying L-convex and bisubmodular functions convex and bisubmodular functions.
    MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6907, 400–411.'
  mla: 'Kolmogorov, Vladimir. <i>Submodularity on a Tree: Unifying Submodularity on
    a Tree: Unifying L-Convex and Bisubmodular Functions Convex and Bisubmodular Functions</i>.
    Vol. 6907, Springer, 2011, pp. 400–11, doi:<a href="https://doi.org/10.1007/978-3-642-22993-0_37">10.1007/978-3-642-22993-0_37</a>.'
  short: V. Kolmogorov, in:, Springer, 2011, pp. 400–411.
conference:
  name: 'MFCS: Mathematical Foundations of Computer Science'
date_created: 2018-12-11T12:02:00Z
date_published: 2011-08-09T00:00:00Z
date_updated: 2021-01-12T07:41:47Z
day: '09'
doi: 10.1007/978-3-642-22993-0_37
extern: 1
intvolume: '      6907'
main_file_link:
- open_access: '0'
  url: http://arxiv.org/pdf/1007.1229v3
month: '08'
page: 400 - 411
publication_status: published
publisher: Springer
publist_id: '3478'
quality_controlled: 0
status: public
title: 'Submodularity on a tree: Unifying Submodularity on a tree: Unifying L-convex
  and bisubmodular functions convex and bisubmodular functions'
type: conference
volume: 6907
year: '2011'
...
---
_id: '3236'
abstract:
- lang: eng
  text: 'If a cryptographic primitive remains secure even if ℓ bits about the secret
    key are leaked to the adversary, one would expect that at least one of n independent
    instantiations of the scheme remains secure given n·ℓ bits of leakage. This intuition
    has been proven true for schemes satisfying some special information-theoretic
    properties by Alwen et al. [Eurocrypt''10]. On the negative side, Lewko and Waters
    [FOCS''10] construct a CPA secure public-key encryption scheme for which this
    intuition fails. The counterexample of Lewko and Waters leaves open the interesting
    possibility that for any scheme there exists a constant c&gt;0, such that n fold
    repetition remains secure against c·n·ℓ bits of leakage. Furthermore, their counterexample
    requires the n copies of the encryption scheme to share a common reference parameter,
    leaving open the possibility that the intuition is true for all schemes without
    common setup. In this work we give a stronger counterexample ruling out these
    possibilities. We construct a signature scheme such that: 1. a single instantiation
    remains secure given ℓ = log(k) bits of leakage where k is a security parameter.
    2. any polynomial number of independent instantiations can be broken (in the strongest
    sense of key-recovery) given ℓ′ = poly(k) bits of leakage. Note that ℓ does not
    depend on the number of instances. The computational assumption underlying our
    counterexample is that non-interactive computationally sound proofs exist. Moreover,
    under a stronger (non-standard) assumption about such proofs, our counterexample
    does not require a common reference parameter. The underlying idea of our counterexample
    is rather generic and can be applied to other primitives like encryption schemes.
    © 2011 International Association for Cryptologic Research.'
alternative_title:
- LNCS
author:
- first_name: Abhishek
  full_name: Jain, Abhishek
  last_name: Jain
- first_name: Krzysztof Z
  full_name: Krzysztof Pietrzak
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: 'Jain A, Pietrzak KZ. Parallel repetition for leakage resilience amplification
    revisited. In: Vol 6597. Springer; 2011:58-69. doi:<a href="https://doi.org/10.1007/978-3-642-19571-6_5">10.1007/978-3-642-19571-6_5</a>'
  apa: 'Jain, A., &#38; Pietrzak, K. Z. (2011). Parallel repetition for leakage resilience
    amplification revisited (Vol. 6597, pp. 58–69). Presented at the TCC: Theory of
    Cryptography Conference, Springer. <a href="https://doi.org/10.1007/978-3-642-19571-6_5">https://doi.org/10.1007/978-3-642-19571-6_5</a>'
  chicago: Jain, Abhishek, and Krzysztof Z Pietrzak. “Parallel Repetition for Leakage
    Resilience Amplification Revisited,” 6597:58–69. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-19571-6_5">https://doi.org/10.1007/978-3-642-19571-6_5</a>.
  ieee: 'A. Jain and K. Z. Pietrzak, “Parallel repetition for leakage resilience amplification
    revisited,” presented at the TCC: Theory of Cryptography Conference, 2011, vol.
    6597, pp. 58–69.'
  ista: 'Jain A, Pietrzak KZ. 2011. Parallel repetition for leakage resilience amplification
    revisited. TCC: Theory of Cryptography Conference, LNCS, vol. 6597, 58–69.'
  mla: Jain, Abhishek, and Krzysztof Z. Pietrzak. <i>Parallel Repetition for Leakage
    Resilience Amplification Revisited</i>. Vol. 6597, Springer, 2011, pp. 58–69,
    doi:<a href="https://doi.org/10.1007/978-3-642-19571-6_5">10.1007/978-3-642-19571-6_5</a>.
  short: A. Jain, K.Z. Pietrzak, in:, Springer, 2011, pp. 58–69.
conference:
  name: 'TCC: Theory of Cryptography Conference'
date_created: 2018-12-11T12:02:11Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:00Z
day: '01'
doi: 10.1007/978-3-642-19571-6_5
extern: 1
month: '01'
page: 58 - 69
publication_status: published
publisher: Springer
publist_id: '3443'
quality_controlled: 0
status: public
title: Parallel repetition for leakage resilience amplification revisited
type: conference
volume: '6597 '
year: '2011'
...
---
_id: '3238'
abstract:
- lang: eng
  text: We construct efficient authentication protocols and message-authentication
    codes (MACs) whose security can be reduced to the learning parity with noise (LPN)
    problem. Despite a large body of work - starting with the HB protocol of Hopper
    and Blum in 2001 - until now it was not even known how to construct an efficient
    authentication protocol from LPN which is secure against man-in-the-middle (MIM)
    attacks. A MAC implies such a (two-round) protocol. © 2011 International Association
    for Cryptologic Research
acknowledgement: The European Regional Development Fund (ERDF),Guardtime,Qualcomm,Swedbank
alternative_title:
- LNCS
author:
- first_name: Eike
  full_name: Kiltz, Eike
  last_name: Kiltz
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
- first_name: David
  full_name: Cash, David
  last_name: Cash
- first_name: Abhishek
  full_name: Jain, Abhishek
  last_name: Jain
- first_name: Daniele
  full_name: Venturi, Daniele
  last_name: Venturi
citation:
  ama: 'Kiltz E, Pietrzak KZ, Cash D, Jain A, Venturi D. Efficient authentication
    from hard learning problems. In: Vol 6632. Springer; 2011:7-26. doi:<a href="https://doi.org/10.1007/978-3-642-20465-4_3">10.1007/978-3-642-20465-4_3</a>'
  apa: 'Kiltz, E., Pietrzak, K. Z., Cash, D., Jain, A., &#38; Venturi, D. (2011).
    Efficient authentication from hard learning problems (Vol. 6632, pp. 7–26). Presented
    at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Tallinn,
    Estonia: Springer. <a href="https://doi.org/10.1007/978-3-642-20465-4_3">https://doi.org/10.1007/978-3-642-20465-4_3</a>'
  chicago: Kiltz, Eike, Krzysztof Z Pietrzak, David Cash, Abhishek Jain, and Daniele
    Venturi. “Efficient Authentication from Hard Learning Problems,” 6632:7–26. Springer,
    2011. <a href="https://doi.org/10.1007/978-3-642-20465-4_3">https://doi.org/10.1007/978-3-642-20465-4_3</a>.
  ieee: 'E. Kiltz, K. Z. Pietrzak, D. Cash, A. Jain, and D. Venturi, “Efficient authentication
    from hard learning problems,” presented at the EUROCRYPT: Theory and Applications
    of Cryptographic Techniques, Tallinn, Estonia, 2011, vol. 6632, pp. 7–26.'
  ista: 'Kiltz E, Pietrzak KZ, Cash D, Jain A, Venturi D. 2011. Efficient authentication
    from hard learning problems. EUROCRYPT: Theory and Applications of Cryptographic
    Techniques, LNCS, vol. 6632, 7–26.'
  mla: Kiltz, Eike, et al. <i>Efficient Authentication from Hard Learning Problems</i>.
    Vol. 6632, Springer, 2011, pp. 7–26, doi:<a href="https://doi.org/10.1007/978-3-642-20465-4_3">10.1007/978-3-642-20465-4_3</a>.
  short: E. Kiltz, K.Z. Pietrzak, D. Cash, A. Jain, D. Venturi, in:, Springer, 2011,
    pp. 7–26.
conference:
  end_date: 2011-05-19
  location: Tallinn, Estonia
  name: 'EUROCRYPT: Theory and Applications of Cryptographic Techniques'
  start_date: 2011-05-15
date_created: 2018-12-11T12:02:11Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2025-04-15T08:32:11Z
day: '01'
doi: 10.1007/978-3-642-20465-4_3
extern: '1'
intvolume: '      6632'
language:
- iso: eng
month: '05'
oa_version: None
page: 7 - 26
publication_status: published
publisher: Springer
publist_id: '3442'
quality_controlled: '1'
related_material:
  record:
  - id: '1187'
    relation: later_version
    status: public
status: public
title: Efficient authentication from hard learning problems
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 6632
year: '2011'
...
---
_id: '3239'
abstract:
- lang: eng
  text: Tampering attacks are cryptanalytic attacks on the implementation of cryptographic
    algorithms (e.g., smart cards), where an adversary introduces faults with the
    hope that the tampered device will reveal secret information. Inspired by the
    work of Ishai et al. [Eurocrypt'06], we propose a compiler that transforms any
    circuit into a new circuit with the same functionality, but which is resilient
    against a well-defined and powerful tampering adversary. More concretely, our
    transformed circuits remain secure even if the adversary can adaptively tamper
    with every wire in the circuit as long as the tampering fails with some probability
    δ&gt;0. This additional requirement is motivated by practical tampering attacks,
    where it is often difficult to guarantee the success of a specific attack. Formally,
    we show that a q-query tampering attack against the transformed circuit can be
    &quot;simulated&quot; with only black-box access to the original circuit and log(q)
    bits of additional auxiliary information. Thus, if the implemented cryptographic
    scheme is secure against log(q) bits of leakage, then our implementation is tamper-proof
    in the above sense. Surprisingly, allowing for this small amount of information
    leakage allows for much more efficient compilers, which moreover do not require
    randomness during evaluation. Similar to earlier works our compiler requires small,
    stateless and computation-independent tamper-proof gadgets. Thus, our result can
    be interpreted as reducing the problem of shielding arbitrary complex computation
    to protecting simple components. © 2011 Springer-Verlag.
alternative_title:
- LNCS
author:
- first_name: Sebastian
  full_name: Faust, Sebastian
  last_name: Faust
- first_name: Krzysztof Z
  full_name: Krzysztof Pietrzak
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
- first_name: Daniele
  full_name: Venturi, Daniele
  last_name: Venturi
citation:
  ama: 'Faust S, Pietrzak KZ, Venturi D. Tamper proof circuits How to trade leakage
    for tamper resilience. In: Vol 6755. Springer; 2011:391-402. doi:<a href="https://doi.org/10.1007/978-3-642-22006-7_33">10.1007/978-3-642-22006-7_33</a>'
  apa: 'Faust, S., Pietrzak, K. Z., &#38; Venturi, D. (2011). Tamper proof circuits
    How to trade leakage for tamper resilience (Vol. 6755, pp. 391–402). Presented
    at the ICALP: Automata, Languages and Programming, Springer. <a href="https://doi.org/10.1007/978-3-642-22006-7_33">https://doi.org/10.1007/978-3-642-22006-7_33</a>'
  chicago: Faust, Sebastian, Krzysztof Z Pietrzak, and Daniele Venturi. “Tamper Proof
    Circuits How to Trade Leakage for Tamper Resilience,” 6755:391–402. Springer,
    2011. <a href="https://doi.org/10.1007/978-3-642-22006-7_33">https://doi.org/10.1007/978-3-642-22006-7_33</a>.
  ieee: 'S. Faust, K. Z. Pietrzak, and D. Venturi, “Tamper proof circuits How to trade
    leakage for tamper resilience,” presented at the ICALP: Automata, Languages and
    Programming, 2011, vol. 6755, no. Part 1, pp. 391–402.'
  ista: 'Faust S, Pietrzak KZ, Venturi D. 2011. Tamper proof circuits How to trade
    leakage for tamper resilience. ICALP: Automata, Languages and Programming, LNCS,
    vol. 6755, 391–402.'
  mla: Faust, Sebastian, et al. <i>Tamper Proof Circuits How to Trade Leakage for
    Tamper Resilience</i>. Vol. 6755, no. Part 1, Springer, 2011, pp. 391–402, doi:<a
    href="https://doi.org/10.1007/978-3-642-22006-7_33">10.1007/978-3-642-22006-7_33</a>.
  short: S. Faust, K.Z. Pietrzak, D. Venturi, in:, Springer, 2011, pp. 391–402.
conference:
  name: 'ICALP: Automata, Languages and Programming'
date_created: 2018-12-11T12:02:12Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:02Z
day: '01'
doi: 10.1007/978-3-642-22006-7_33
extern: 1
issue: Part 1
month: '01'
page: 391 - 402
publication_status: published
publisher: Springer
publist_id: '3441'
quality_controlled: 0
status: public
title: Tamper proof circuits How to trade leakage for tamper resilience
type: conference
volume: '6755 '
year: '2011'
...
---
_id: '3240'
abstract:
- lang: eng
  text: 'The famous Leftover Hash Lemma (LHL) states that (almost) universal hash
    functions are good randomness extractors. Despite its numerous applications, LHL-based
    extractors suffer from the following two limitations: - Large Entropy Loss: to
    extract v bits from distribution X of min-entropy m which are ε-close to uniform,
    one must set v ≤ m - 2log(1/ε), meaning that the entropy loss L = def m - v ≥
    2 log(1/ε). For many applications, such entropy loss is too large. - Large Seed
    Length: the seed length n of (almost) universal hash function required by the
    LHL must be at least n ≥ min (u - v, v + 2log(1/ε)) - O(1), where u is the length
    of the source, and must grow with the number of extracted bits. Quite surprisingly,
    we show that both limitations of the LHL - large entropy loss and large seed -
    can be overcome (or, at least, mitigated) in various important scenarios. First,
    we show that entropy loss could be reduced to L = log(1/ε) for the setting of
    deriving secret keys for a wide range of cryptographic applications. Specifically,
    the security of these schemes with an LHL-derived key gracefully degrades from
    ε to at most ε + √ε2-L. (Notice that, unlike standard LHL, this bound is meaningful
    even when one extracts more bits than the min-entropy we have!) Based on these
    results we build a general computational extractor that enjoys low entropy loss
    and can be used to instantiate a generic key derivation function for any cryptographic
    application. Second, we study the soundness of the natural expand-then-extract
    approach, where one uses a pseudorandom generator (PRG) to expand a short &quot;input
    seed&quot; S into a longer &quot;output seed&quot; S′, and then use the resulting
    S′ as the seed required by the LHL (or, more generally, by any randomness extractor).
    We show that, in general, the expand-then-extract approach is not sound if the
    Decisional Diffie-Hellman assumption is true. Despite that, we show that it is
    sound either: (1) when extracting a &quot;small&quot; (logarithmic in the security
    of the PRG) number of bits; or (2) in minicrypt. Implication (2) suggests that
    the expand-then-extract approach is likely secure when used with &quot;practical&quot;
    PRGs, despite lacking a reductionist proof of security! © 2011 International Association
    for Cryptologic Research.'
alternative_title:
- LNCS
author:
- first_name: Boaz
  full_name: Barak,  Boaz
  last_name: Barak
- first_name: Yevgeniy
  full_name: Dodis, Yevgeniy
  last_name: Dodis
- first_name: Hugo
  full_name: Krawczyk, Hugo
  last_name: Krawczyk
- first_name: Olivier
  full_name: Pereira, Olivier
  last_name: Pereira
- first_name: Krzysztof Z
  full_name: Krzysztof Pietrzak
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
- first_name: François
  full_name: Standaert, François-Xavier
  last_name: Standaert
- first_name: Yu
  full_name: Yu, Yu
  last_name: Yu
citation:
  ama: 'Barak B, Dodis Y, Krawczyk H, et al. Leftover hash lemma revisited. In: Vol
    6841. Springer; 2011:1-20. doi:<a href="https://doi.org/ 10.1007/978-3-642-22792-9_1">
    10.1007/978-3-642-22792-9_1</a>'
  apa: 'Barak, B., Dodis, Y., Krawczyk, H., Pereira, O., Pietrzak, K. Z., Standaert,
    F., &#38; Yu, Y. (2011). Leftover hash lemma revisited (Vol. 6841, pp. 1–20).
    Presented at the CRYPTO: International Cryptology Conference, Springer. <a href="https://doi.org/
    10.1007/978-3-642-22792-9_1">https://doi.org/ 10.1007/978-3-642-22792-9_1</a>'
  chicago: Barak, Boaz, Yevgeniy Dodis, Hugo Krawczyk, Olivier Pereira, Krzysztof
    Z Pietrzak, François Standaert, and Yu Yu. “Leftover Hash Lemma Revisited,” 6841:1–20.
    Springer, 2011. <a href="https://doi.org/ 10.1007/978-3-642-22792-9_1">https://doi.org/
    10.1007/978-3-642-22792-9_1</a>.
  ieee: 'B. Barak <i>et al.</i>, “Leftover hash lemma revisited,” presented at the
    CRYPTO: International Cryptology Conference, 2011, vol. 6841, pp. 1–20.'
  ista: 'Barak B, Dodis Y, Krawczyk H, Pereira O, Pietrzak KZ, Standaert F, Yu Y.
    2011. Leftover hash lemma revisited. CRYPTO: International Cryptology Conference,
    LNCS, vol. 6841, 1–20.'
  mla: Barak, Boaz, et al. <i>Leftover Hash Lemma Revisited</i>. Vol. 6841, Springer,
    2011, pp. 1–20, doi:<a href="https://doi.org/ 10.1007/978-3-642-22792-9_1"> 10.1007/978-3-642-22792-9_1</a>.
  short: B. Barak, Y. Dodis, H. Krawczyk, O. Pereira, K.Z. Pietrzak, F. Standaert,
    Y. Yu, in:, Springer, 2011, pp. 1–20.
conference:
  name: 'CRYPTO: International Cryptology Conference'
date_created: 2018-12-11T12:02:12Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:03Z
day: '01'
doi: ' 10.1007/978-3-642-22792-9_1'
extern: 1
intvolume: '      6841'
month: '01'
page: 1 - 20
publication_status: published
publisher: Springer
publist_id: '3440'
quality_controlled: 0
status: public
title: Leftover hash lemma revisited
type: conference
volume: 6841
year: '2011'
...
---
_id: '3264'
abstract:
- lang: eng
  text: Verification of programs with procedures, multi-threaded programs, and higher-order
    functional programs can be effectively au- tomated using abstraction and refinement
    schemes that rely on spurious counterexamples for abstraction discovery. The analysis
    of counterexam- ples can be automated by a series of interpolation queries, or,
    alterna- tively, as a constraint solving query expressed by a set of recursion
    free Horn clauses. (A set of interpolation queries can be formulated as a single
    constraint over Horn clauses with linear dependency structure between the unknown
    relations.) In this paper we present an algorithm for solving recursion free Horn
    clauses over a combined theory of linear real/rational arithmetic and uninterpreted
    functions. Our algorithm performs resolu- tion to deal with the clausal structure
    and relies on partial solutions to deal with (non-local) instances of functionality
    axioms.
alternative_title:
- LNCS
author:
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Corneliu
  full_name: Popeea, Corneliu
  last_name: Popeea
- first_name: Andrey
  full_name: Rybalchenko, Andrey
  last_name: Rybalchenko
citation:
  ama: 'Gupta A, Popeea C, Rybalchenko A. Solving recursion-free Horn clauses over
    LI+UIF. In: Yang H, ed. Vol 7078. Springer; 2011:188-203. doi:<a href="https://doi.org/10.1007/978-3-642-25318-8_16">10.1007/978-3-642-25318-8_16</a>'
  apa: 'Gupta, A., Popeea, C., &#38; Rybalchenko, A. (2011). Solving recursion-free
    Horn clauses over LI+UIF. In H. Yang (Ed.) (Vol. 7078, pp. 188–203). Presented
    at the APLAS: Asian Symposium on Programming Languages and Systems, Kenting, Taiwan:
    Springer. <a href="https://doi.org/10.1007/978-3-642-25318-8_16">https://doi.org/10.1007/978-3-642-25318-8_16</a>'
  chicago: Gupta, Ashutosh, Corneliu Popeea, and Andrey Rybalchenko. “Solving Recursion-Free
    Horn Clauses over LI+UIF.” edited by Hongseok Yang, 7078:188–203. Springer, 2011.
    <a href="https://doi.org/10.1007/978-3-642-25318-8_16">https://doi.org/10.1007/978-3-642-25318-8_16</a>.
  ieee: 'A. Gupta, C. Popeea, and A. Rybalchenko, “Solving recursion-free Horn clauses
    over LI+UIF,” presented at the APLAS: Asian Symposium on Programming Languages
    and Systems, Kenting, Taiwan, 2011, vol. 7078, pp. 188–203.'
  ista: 'Gupta A, Popeea C, Rybalchenko A. 2011. Solving recursion-free Horn clauses
    over LI+UIF. APLAS: Asian Symposium on Programming Languages and Systems, LNCS,
    vol. 7078, 188–203.'
  mla: Gupta, Ashutosh, et al. <i>Solving Recursion-Free Horn Clauses over LI+UIF</i>.
    Edited by Hongseok Yang, vol. 7078, Springer, 2011, pp. 188–203, doi:<a href="https://doi.org/10.1007/978-3-642-25318-8_16">10.1007/978-3-642-25318-8_16</a>.
  short: A. Gupta, C. Popeea, A. Rybalchenko, in:, H. Yang (Ed.), Springer, 2011,
    pp. 188–203.
conference:
  end_date: 2011-12-07
  location: Kenting, Taiwan
  name: 'APLAS: Asian Symposium on Programming Languages and Systems'
  start_date: 2011-12-05
date_created: 2018-12-11T12:02:20Z
date_published: 2011-12-05T00:00:00Z
date_updated: 2024-10-21T06:03:01Z
day: '05'
department:
- _id: ToHe
doi: 10.1007/978-3-642-25318-8_16
ec_funded: 1
editor:
- first_name: Hongseok
  full_name: Yang, Hongseok
  last_name: Yang
intvolume: '      7078'
language:
- iso: eng
month: '12'
oa_version: None
page: 188 - 203
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication_status: published
publisher: Springer
publist_id: '3383'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Solving recursion-free Horn clauses over LI+UIF
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 7078
year: '2011'
...
