---
_id: '10095'
abstract:
- lang: eng
  text: Growth regulation tailors plant development to its environment. A showcase
    is response to gravity, where shoots bend up and roots down1. This paradox is
    based on opposite effects of the phytohormone auxin, which promotes cell expansion
    in shoots, while inhibiting it in roots via a yet unknown cellular mechanism2.
    Here, by combining microfluidics, live imaging, genetic engineering and phospho-proteomics
    in Arabidopsis thaliana, we advance our understanding how auxin inhibits root
    growth. We show that auxin activates two distinct, antagonistically acting signalling
    pathways that converge on the rapid regulation of the apoplastic pH, a causative
    growth determinant. Cell surface-based TRANSMEMBRANE KINASE1 (TMK1) interacts
    with and mediates phosphorylation and activation of plasma membrane H+-ATPases
    for apoplast acidification, while intracellular canonical auxin signalling promotes
    net cellular H+-influx, causing apoplast alkalinisation. The simultaneous activation
    of these two counteracting mechanisms poises the root for a rapid, fine-tuned
    growth modulation while navigating complex soil environment.
acknowledged_ssus:
- _id: LifeSc
- _id: M-Shop
- _id: Bio
acknowledgement: We thank Nataliia Gnyliukh and Lukas Hörmayer for technical assistance
  and Nadine Paris for sharing PM-Cyto seeds. We gratefully acknowledge Life Science,
  Machine Shop and Bioimaging Facilities of IST Austria. This project has received
  funding from the European Research Council Advanced Grant (ETAP-742985) and the
  Austrian Science Fund (FWF) I 3630-B25 to J.F., the National Institutes of Health
  (GM067203) to W.M.G., the Netherlands Organization for Scientific Research (NWO;
  VIDI-864.13.001.), the Research Foundation-Flanders (FWO; Odysseus II G0D0515N)
  and a European Research Council Starting Grant (TORPEDO-714055) to W.S. and B.D.R.,
  the VICI grant (865.14.001) from the Netherlands Organization for Scientific Research
  to M.R and D.W., the Australian Research Council and China National Distinguished
  Expert Project (WQ20174400441) to S.S., the MEXT/JSPS KAKENHI to K.T. (20K06685)
  and T.K. (20H05687 and 20H05910),  the European Union’s Horizon 2020 research and
  innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385
  and the DOC Fellowship of the Austrian Academy of Sciences to L.L., the China Scholarship
  Council to J.C.
article_number: '266395'
article_processing_charge: No
author:
- first_name: Lanxin
  full_name: Li, Lanxin
  id: 367EF8FA-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0002-5607-272X
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: Mark
  full_name: Roosjen, Mark
  last_name: Roosjen
- first_name: Koji
  full_name: Takahashi, Koji
  last_name: Takahashi
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Jian
  full_name: Chen, Jian
  last_name: Chen
- first_name: Lana
  full_name: Shabala, Lana
  last_name: Shabala
- first_name: Wouter
  full_name: Smet, Wouter
  last_name: Smet
- first_name: Hong
  full_name: Ren, Hong
  last_name: Ren
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Sergey
  full_name: Shabala, Sergey
  last_name: Shabala
- first_name: Bert
  full_name: De Rybel, Bert
  last_name: De Rybel
- first_name: Dolf
  full_name: Weijers, Dolf
  last_name: Weijers
- first_name: Toshinori
  full_name: Kinoshita, Toshinori
  last_name: Kinoshita
- first_name: William M.
  full_name: Gray, William M.
  last_name: Gray
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Li L, Verstraeten I, Roosjen M, et al. Cell surface and intracellular auxin
    signalling for H+-fluxes in root growth. <i>Research Square</i>. doi:<a href="https://doi.org/10.21203/rs.3.rs-266395/v3">10.21203/rs.3.rs-266395/v3</a>
  apa: Li, L., Verstraeten, I., Roosjen, M., Takahashi, K., Rodriguez Solovey, L.,
    Merrin, J., … Friml, J. (n.d.). Cell surface and intracellular auxin signalling
    for H+-fluxes in root growth. <i>Research Square</i>. <a href="https://doi.org/10.21203/rs.3.rs-266395/v3">https://doi.org/10.21203/rs.3.rs-266395/v3</a>
  chicago: Li, Lanxin, Inge Verstraeten, Mark Roosjen, Koji Takahashi, Lesia Rodriguez
    Solovey, Jack Merrin, Jian Chen, et al. “Cell Surface and Intracellular Auxin
    Signalling for H+-Fluxes in Root Growth.” <i>Research Square</i>, n.d. <a href="https://doi.org/10.21203/rs.3.rs-266395/v3">https://doi.org/10.21203/rs.3.rs-266395/v3</a>.
  ieee: L. Li <i>et al.</i>, “Cell surface and intracellular auxin signalling for
    H+-fluxes in root growth,” <i>Research Square</i>. .
  ista: Li L, Verstraeten I, Roosjen M, Takahashi K, Rodriguez Solovey L, Merrin J,
    Chen J, Shabala L, Smet W, Ren H, Vanneste S, Shabala S, De Rybel B, Weijers D,
    Kinoshita T, Gray WM, Friml J. Cell surface and intracellular auxin signalling
    for H+-fluxes in root growth. Research Square, 266395.
  mla: Li, Lanxin, et al. “Cell Surface and Intracellular Auxin Signalling for H+-Fluxes
    in Root Growth.” <i>Research Square</i>, 266395, doi:<a href="https://doi.org/10.21203/rs.3.rs-266395/v3">10.21203/rs.3.rs-266395/v3</a>.
  short: L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J.
    Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel,
    D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Research Square (n.d.).
corr_author: '1'
date_created: 2021-10-06T08:56:22Z
date_published: 2021-09-09T00:00:00Z
date_updated: 2026-07-01T22:30:49Z
day: '09'
department:
- _id: JiFr
- _id: NanoFab
doi: 10.21203/rs.3.rs-266395/v3
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.doi.org/10.21203/rs.3.rs-266395/v3
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 26B4D67E-B435-11E9-9278-68D0E5697425
  grant_number: '25351'
  name: 'A Case Study of Plant Growth Regulation: Molecular Mechanism of Auxin-mediated
    Rapid Growth Inhibition in Arabidopsis Root'
publication: Research Square
publication_identifier:
  issn:
  - 2693-5015
publication_status: draft
related_material:
  record:
  - id: '10223'
    relation: later_version
    status: public
  - id: '10083'
    relation: dissertation_contains
    status: public
status: public
title: Cell surface and intracellular auxin signalling for H+-fluxes in root growth
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
OA_place: publisher
_id: '10135'
abstract:
- lang: eng
  text: "Plants maintain the capacity to develop new organs e.g. lateral roots post-embryonically
    throughout their whole life and thereby flexibly adapt to ever-changing environmental
    conditions. Plant hormones auxin and cytokinin are the main regulators of the
    lateral root organogenesis. Additionally to their solo activities, the interaction
    between auxin and\r\ncytokinin plays crucial role in fine-tuning of lateral root
    development and growth. In particular, cytokinin modulates auxin distribution
    within the developing lateral root by affecting the endomembrane trafficking of
    auxin transporter PIN1 and promoting its vacuolar degradation (Marhavý et al.,
    2011, 2014). This effect is independent of transcription and\r\ntranslation. Therefore,
    it suggests novel, non-canonical cytokinin activity occuring possibly on the posttranslational
    level. Impact of cytokinin and other plant hormones on auxin transporters (including
    PIN1) on the posttranslational level is described in detail in the introduction
    part of this thesis in a form of a review (Semeradova et al., 2020). To gain insights
    into the molecular machinery underlying cytokinin effect on the endomembrane trafficking
    in the plant cell, in particular on the PIN1 degradation, we conducted two large
    proteomic screens: 1) Identification of cytokinin binding proteins using\r\nchemical
    proteomics. 2) Monitoring of proteomic and phosphoproteomic changes upon cytokinin
    treatment. In the first screen, we identified DYNAMIN RELATED PROTEIN 2A (DRP2A).
    We found that DRP2A plays a role in cytokinin regulated processes during the plant
    growth and that cytokinin treatment promotes destabilization of DRP2A protein.
    However, the role of DRP2A in the PIN1 degradation remains to be elucidated. In
    the second screen, we found VACUOLAR PROTEIN SORTING 9A (VPS9A). VPS9a plays crucial
    role in plant’s response to cytokin and in cytokinin mediated PIN1 degradation.
    Altogether, we identified proteins, which bind to cytokinin and proteins that
    in response to\r\ncytokinin exhibit significantly changed abundance or phosphorylation
    pattern. By combining information from these two screens, we can pave our way
    towards understanding of noncanonical cytokinin effects."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Hana
  full_name: Semerádová, Hana
  id: 42FE702E-F248-11E8-B48F-1D18A9856A87
  last_name: Semerádová
citation:
  ama: Semerádová H. Molecular mechanisms of the cytokinin-regulated endomembrane
    trafficking to coordinate plant organogenesis. 2021. doi:<a href="https://doi.org/10.15479/at:ista:10135">10.15479/at:ista:10135</a>
  apa: Semerádová, H. (2021). <i>Molecular mechanisms of the cytokinin-regulated endomembrane
    trafficking to coordinate plant organogenesis</i>. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/at:ista:10135">https://doi.org/10.15479/at:ista:10135</a>
  chicago: Semerádová, Hana. “Molecular Mechanisms of the Cytokinin-Regulated Endomembrane
    Trafficking to Coordinate Plant Organogenesis.” Institute of Science and Technology
    Austria, 2021. <a href="https://doi.org/10.15479/at:ista:10135">https://doi.org/10.15479/at:ista:10135</a>.
  ieee: H. Semerádová, “Molecular mechanisms of the cytokinin-regulated endomembrane
    trafficking to coordinate plant organogenesis,” Institute of Science and Technology
    Austria, 2021.
  ista: Semerádová H. 2021. Molecular mechanisms of the cytokinin-regulated endomembrane
    trafficking to coordinate plant organogenesis. Institute of Science and Technology
    Austria.
  mla: Semerádová, Hana. <i>Molecular Mechanisms of the Cytokinin-Regulated Endomembrane
    Trafficking to Coordinate Plant Organogenesis</i>. Institute of Science and Technology
    Austria, 2021, doi:<a href="https://doi.org/10.15479/at:ista:10135">10.15479/at:ista:10135</a>.
  short: H. Semerádová, Molecular Mechanisms of the Cytokinin-Regulated Endomembrane
    Trafficking to Coordinate Plant Organogenesis, Institute of Science and Technology
    Austria, 2021.
corr_author: '1'
date_created: 2021-10-13T13:42:48Z
date_published: 2021-10-13T00:00:00Z
date_updated: 2026-04-08T07:12:06Z
day: '13'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: EvBe
doi: 10.15479/at:ista:10135
file:
- access_level: closed
  checksum: ce7108853e6cec6224f17cd6429b51fe
  content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
  creator: cziletti
  date_created: 2021-10-27T07:45:37Z
  date_updated: 2022-12-20T23:30:05Z
  embargo_to: open_access
  file_id: '10186'
  file_name: Hana_Semeradova_Disertation_Thesis_II_Revised_3.docx
  file_size: 28508629
  relation: source_file
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  checksum: 0d7afb846e8e31ec794de47bf44e12ef
  content_type: application/pdf
  creator: cziletti
  date_created: 2021-10-27T07:45:57Z
  date_updated: 2022-12-20T23:30:05Z
  embargo: 2022-10-28
  file_id: '10187'
  file_name: Hana_Semeradova_Disertation_Thesis_II_Revised_3PDFA.pdf
  file_size: 10623525
  relation: main_file
file_date_updated: 2022-12-20T23:30:05Z
has_accepted_license: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 261821BC-B435-11E9-9278-68D0E5697425
  grant_number: '24746'
  name: Molecular mechanisms of the cytokinin regulated endomembrane trafficking to
    coordinate plant organogenesis
publication_identifier:
  isbn:
  - 978-3-99078-014-5
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '9160'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
title: Molecular mechanisms of the cytokinin-regulated endomembrane trafficking to
  coordinate plant organogenesis
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2021'
...
---
_id: '9438'
abstract:
- lang: eng
  text: Rigorous investigation of synaptic transmission requires analysis of unitary
    synaptic events by simultaneous recording from presynaptic terminals and postsynaptic
    target neurons. However, this has been achieved at only a limited number of model
    synapses, including the squid giant synapse and the mammalian calyx of Held. Cortical
    presynaptic terminals have been largely inaccessible to direct presynaptic recording,
    due to their small size. Here, we describe a protocol for improved subcellular
    patch-clamp recording in rat and mouse brain slices, with the synapse in a largely
    intact environment. Slice preparation takes ~2 h, recording ~3 h and post hoc
    morphological analysis 2 d. Single presynaptic hippocampal mossy fiber terminals
    are stimulated minimally invasively in the bouton-attached configuration, in which
    the cytoplasmic content remains unperturbed, or in the whole-bouton configuration,
    in which the cytoplasmic composition can be precisely controlled. Paired pre–postsynaptic
    recordings can be integrated with biocytin labeling and morphological analysis,
    allowing correlative investigation of synapse structure and function. Paired recordings
    can be obtained from mossy fiber terminals in slices from both rats and mice,
    implying applicability to genetically modified synapses. Paired recordings can
    also be performed together with axon tract stimulation or optogenetic activation,
    allowing comparison of unitary and compound synaptic events in the same target
    cell. Finally, paired recordings can be combined with spontaneous event analysis,
    permitting collection of miniature events generated at a single identified synapse.
    In conclusion, the subcellular patch-clamp techniques detailed here should facilitate
    analysis of biophysics, plasticity and circuit function of cortical synapses in
    the mammalian central nervous system.
acknowledged_ssus:
- _id: M-Shop
acknowledgement: This project received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (grant agreement no. 692692 to P.J.) and the Fond zur Förderung der Wissenschaftlichen
  Forschung (Z 312-B27, Wittgenstein award to P.J., V 739-B27 to C.B.M.). We are grateful
  to F. Marr and C. Altmutter for excellent technical assistance and cell reconstruction,
  E. Kralli-Beller for manuscript editing, and the Scientific Service Units of IST
  Austria, especially T. Asenov and Miba machine shop, for maximally efficient support.
article_processing_charge: No
article_type: original
author:
- first_name: David H
  full_name: Vandael, David H
  id: 3AE48E0A-F248-11E8-B48F-1D18A9856A87
  last_name: Vandael
  orcid: 0000-0001-7577-1676
- first_name: Yuji
  full_name: Okamoto, Yuji
  id: 3337E116-F248-11E8-B48F-1D18A9856A87
  last_name: Okamoto
  orcid: 0000-0003-0408-6094
- first_name: Carolina
  full_name: Borges Merjane, Carolina
  id: 4305C450-F248-11E8-B48F-1D18A9856A87
  last_name: Borges Merjane
  orcid: 0000-0003-0005-401X
- first_name: Victor M
  full_name: Vargas Barroso, Victor M
  id: 2F55A9DE-F248-11E8-B48F-1D18A9856A87
  last_name: Vargas Barroso
- first_name: Benjamin
  full_name: Suter, Benjamin
  id: 4952F31E-F248-11E8-B48F-1D18A9856A87
  last_name: Suter
  orcid: 0000-0002-9885-6936
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Vandael DH, Okamoto Y, Borges Merjane C, Vargas Barroso VM, Suter B, Jonas
    PM. Subcellular patch-clamp techniques for single-bouton stimulation and simultaneous
    pre- and postsynaptic recording at cortical synapses. <i>Nature Protocols</i>.
    2021;16(6):2947–2967. doi:<a href="https://doi.org/10.1038/s41596-021-00526-0">10.1038/s41596-021-00526-0</a>
  apa: Vandael, D. H., Okamoto, Y., Borges Merjane, C., Vargas Barroso, V. M., Suter,
    B., &#38; Jonas, P. M. (2021). Subcellular patch-clamp techniques for single-bouton
    stimulation and simultaneous pre- and postsynaptic recording at cortical synapses.
    <i>Nature Protocols</i>. Springer Nature. <a href="https://doi.org/10.1038/s41596-021-00526-0">https://doi.org/10.1038/s41596-021-00526-0</a>
  chicago: Vandael, David H, Yuji Okamoto, Carolina Borges Merjane, Victor M Vargas
    Barroso, Benjamin Suter, and Peter M Jonas. “Subcellular Patch-Clamp Techniques
    for Single-Bouton Stimulation and Simultaneous Pre- and Postsynaptic Recording
    at Cortical Synapses.” <i>Nature Protocols</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41596-021-00526-0">https://doi.org/10.1038/s41596-021-00526-0</a>.
  ieee: D. H. Vandael, Y. Okamoto, C. Borges Merjane, V. M. Vargas Barroso, B. Suter,
    and P. M. Jonas, “Subcellular patch-clamp techniques for single-bouton stimulation
    and simultaneous pre- and postsynaptic recording at cortical synapses,” <i>Nature
    Protocols</i>, vol. 16, no. 6. Springer Nature, pp. 2947–2967, 2021.
  ista: Vandael DH, Okamoto Y, Borges Merjane C, Vargas Barroso VM, Suter B, Jonas
    PM. 2021. Subcellular patch-clamp techniques for single-bouton stimulation and
    simultaneous pre- and postsynaptic recording at cortical synapses. Nature Protocols.
    16(6), 2947–2967.
  mla: Vandael, David H., et al. “Subcellular Patch-Clamp Techniques for Single-Bouton
    Stimulation and Simultaneous Pre- and Postsynaptic Recording at Cortical Synapses.”
    <i>Nature Protocols</i>, vol. 16, no. 6, Springer Nature, 2021, pp. 2947–2967,
    doi:<a href="https://doi.org/10.1038/s41596-021-00526-0">10.1038/s41596-021-00526-0</a>.
  short: D.H. Vandael, Y. Okamoto, C. Borges Merjane, V.M. Vargas Barroso, B. Suter,
    P.M. Jonas, Nature Protocols 16 (2021) 2947–2967.
corr_author: '1'
date_created: 2021-05-30T22:01:24Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2025-04-22T22:30:43Z
day: '01'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1038/s41596-021-00526-0
ec_funded: 1
external_id:
  isi:
  - '000650528700003'
  pmid:
  - '33990799'
file:
- access_level: open_access
  checksum: 7eb580abd8893cdb0b410cf41bc8c263
  content_type: application/pdf
  creator: cziletti
  date_created: 2021-07-08T12:27:55Z
  date_updated: 2021-12-02T23:30:05Z
  embargo: 2021-12-01
  file_id: '9639'
  file_name: VandaeletalAuthorVersion2021.pdf
  file_size: 38574802
  relation: main_file
file_date_updated: 2021-12-02T23:30:05Z
has_accepted_license: '1'
intvolume: '        16'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 2947–2967
pmid: 1
project:
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glutamatergic synapse
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00312
  name: Synaptic communication in neuronal microcircuits
- _id: 2696E7FE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: V00739
  name: Structural plasticity at mossy fiber-CA3 synapses
publication: Nature Protocols
publication_identifier:
  eissn:
  - 1750-2799
  issn:
  - 1754-2189
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Subcellular patch-clamp techniques for single-bouton stimulation and simultaneous
  pre- and postsynaptic recording at cortical synapses
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2021'
...
---
OA_place: publisher
_id: '9623'
abstract:
- lang: eng
  text: "Cytoplasmic reorganizations are essential for morphogenesis. In large cells
    like oocytes, these reorganizations become crucial in patterning the oocyte for
    later stages of embryonic development. Ascidians oocytes reorganize their cytoplasm
    (ooplasm) in a spectacular manner. Ooplasmic reorganization is initiated at fertilization
    with the contraction of the actomyosin cortex along the animal-vegetal axis of
    the oocyte, driving the accumulation of cortical endoplasmic reticulum (cER),
    maternal mRNAs associated to it and a mitochondria-rich subcortical layer – the
    myoplasm – in a region of the vegetal pole termed contraction pole (CP). Here
    we have used the species Phallusia mammillata to investigate the changes in cell
    shape that accompany these reorganizations and the mechanochemical mechanisms
    underlining CP formation.\r\nWe report that the length of the animal-vegetal (AV)
    axis oscillates upon fertilization: it first undergoes a cycle of fast elongation-lengthening
    followed by a slow expansion of mainly the vegetal pole (VP) of the cell. We show
    that the fast oscillation corresponds to a dynamic polarization of the actin cortex
    as a result of a fertilization-induced increase in cortical tension in the oocyte
    that triggers a rupture of the cortex at the animal pole and the establishment
    of vegetal-directed cortical flows. These flows are responsible for the vegetal
    accumulation of actin causing the VP to flatten. \r\nWe find that the slow expansion
    of the VP, leading to CP formation, correlates with a relaxation of the vegetal
    cortex and that the myoplasm plays a role in the expansion. We show that the myoplasm
    is a solid-like layer that buckles under compression forces arising from the contracting
    actin cortex at the VP. Straightening of the myoplasm when actin flows stops,
    facilitates the expansion of the VP and the CP. Altogether, our results present
    a previously unrecognized role for the myoplasm in ascidian ooplasmic segregation.
    \r\n"
acknowledged_ssus:
- _id: Bio
- _id: EM-Fac
- _id: NanoFab
- _id: M-Shop
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Silvia
  full_name: Caballero Mancebo, Silvia
  id: 2F1E1758-F248-11E8-B48F-1D18A9856A87
  last_name: Caballero Mancebo
  orcid: 0000-0002-5223-3346
citation:
  ama: Caballero Mancebo S. Fertilization-induced deformations are controlled by the
    actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes. 2021.
    doi:<a href="https://doi.org/10.15479/at:ista:9623">10.15479/at:ista:9623</a>
  apa: Caballero Mancebo, S. (2021). <i>Fertilization-induced deformations are controlled
    by the actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:9623">https://doi.org/10.15479/at:ista:9623</a>
  chicago: Caballero Mancebo, Silvia. “Fertilization-Induced Deformations Are Controlled
    by the Actin Cortex and a Mitochondria-Rich Subcortical Layer in Ascidian Oocytes.”
    Institute of Science and Technology Austria, 2021. <a href="https://doi.org/10.15479/at:ista:9623">https://doi.org/10.15479/at:ista:9623</a>.
  ieee: S. Caballero Mancebo, “Fertilization-induced deformations are controlled by
    the actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes,”
    Institute of Science and Technology Austria, 2021.
  ista: Caballero Mancebo S. 2021. Fertilization-induced deformations are controlled
    by the actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes.
    Institute of Science and Technology Austria.
  mla: Caballero Mancebo, Silvia. <i>Fertilization-Induced Deformations Are Controlled
    by the Actin Cortex and a Mitochondria-Rich Subcortical Layer in Ascidian Oocytes</i>.
    Institute of Science and Technology Austria, 2021, doi:<a href="https://doi.org/10.15479/at:ista:9623">10.15479/at:ista:9623</a>.
  short: S. Caballero Mancebo, Fertilization-Induced Deformations Are Controlled by
    the Actin Cortex and a Mitochondria-Rich Subcortical Layer in Ascidian Oocytes,
    Institute of Science and Technology Austria, 2021.
corr_author: '1'
date_created: 2021-07-01T14:50:17Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2026-06-18T19:38:50Z
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: CaHe
doi: 10.15479/at:ista:9623
file:
- access_level: closed
  checksum: e039225a47ef32666d59bf35ddd30ecf
  content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
  creator: scaballe
  date_created: 2021-07-01T14:48:54Z
  date_updated: 2022-07-02T22:30:06Z
  embargo_to: open_access
  file_id: '9624'
  file_name: PhDThesis_SCM.docx
  file_size: 131946790
  relation: source_file
- access_level: open_access
  checksum: dd4d78962ea94ad95e97ca7d9af08f4b
  content_type: application/pdf
  creator: scaballe
  date_created: 2021-07-01T14:46:25Z
  date_updated: 2022-07-02T22:30:06Z
  embargo: 2022-07-01
  file_id: '9625'
  file_name: PhDThesis_SCM.pdf
  file_size: 17094958
  relation: main_file
file_date_updated: 2022-07-02T22:30:06Z
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: '111'
publication_identifier:
  isbn:
  - 978-3-99078-012-1
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '9750'
    relation: part_of_dissertation
    status: public
  - id: '9006'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
title: Fertilization-induced deformations are controlled by the actin cortex and a
  mitochondria-rich subcortical layer in ascidian oocytes
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2021'
...
---
_id: '10865'
abstract:
- lang: eng
  text: "We introduce the notion of Witness Maps as a cryptographic notion of a proof
    system. A Unique Witness Map (UWM) deterministically maps all witnesses for an
    \  NP  statement to a single representative witness, resulting in a computationally
    sound, deterministic-prover, non-interactive witness independent proof system.
    A relaxation of UWM, called Compact Witness Map (CWM), maps all the witnesses
    to a small number of witnesses, resulting in a “lossy” deterministic-prover, non-interactive
    proof-system. We also define a Dual Mode Witness Map (DMWM) which adds an “extractable”
    mode to a CWM.\r\nOur main construction is a DMWM for all   NP  relations, assuming
    sub-exponentially secure indistinguishability obfuscation (  iO ), along with
    standard cryptographic assumptions. The DMWM construction relies on a CWM and
    a new primitive called Cumulative All-Lossy-But-One Trapdoor Functions (C-ALBO-TDF),
    both of which are in turn instantiated based on   iO  and other primitives. Our
    instantiation of a CWM is in fact a UWM; in turn, we show that a UWM implies Witness
    Encryption. Along the way to constructing UWM and C-ALBO-TDF, we also construct,
    from standard assumptions, Puncturable Digital Signatures and a new primitive
    called Cumulative Lossy Trapdoor Functions (C-LTDF). The former improves up on
    a construction of Bellare et al. (Eurocrypt 2016), who relied on sub-exponentially
    secure   iO  and sub-exponentially secure OWF.\r\nAs an application of our constructions,
    we show how to use a DMWM to construct the first leakage and tamper-resilient
    signatures with a deterministic signer, thereby solving a decade old open problem
    posed by Katz and Vaikunthanathan (Asiacrypt 2009), by Boyle, Segev and Wichs
    (Eurocrypt 2011), as well as by Faonio and Venturi (Asiacrypt 2016). Our construction
    achieves the optimal leakage rate of   1−o(1) ."
acknowledgement: We would like to thank the anonymous reviewers of PKC 2019 for their
  useful comments and suggestions. We thank Omer Paneth for pointing out to us the
  connection between Unique Witness Maps (UWM) and Witness encryption (WE). The first
  author would like to acknowledge Pandu Rangan for his involvement during the initial
  discussion phase of the project.
article_processing_charge: No
author:
- first_name: Suvradip
  full_name: Chakraborty, Suvradip
  id: B9CD0494-D033-11E9-B219-A439E6697425
  last_name: Chakraborty
- first_name: Manoj
  full_name: Prabhakaran, Manoj
  last_name: Prabhakaran
- first_name: Daniel
  full_name: Wichs, Daniel
  last_name: Wichs
citation:
  ama: 'Chakraborty S, Prabhakaran M, Wichs D. Witness maps and applications. In:
    Kiayias A, ed. <i>Public-Key Cryptography</i>. Vol 12110. LNCS. Cham: Springer
    Nature; 2020:220-246. doi:<a href="https://doi.org/10.1007/978-3-030-45374-9_8">10.1007/978-3-030-45374-9_8</a>'
  apa: 'Chakraborty, S., Prabhakaran, M., &#38; Wichs, D. (2020). Witness maps and
    applications. In A. Kiayias (Ed.), <i>Public-Key Cryptography</i> (Vol. 12110,
    pp. 220–246). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-45374-9_8">https://doi.org/10.1007/978-3-030-45374-9_8</a>'
  chicago: 'Chakraborty, Suvradip, Manoj Prabhakaran, and Daniel Wichs. “Witness Maps
    and Applications.” In <i>Public-Key Cryptography</i>, edited by A Kiayias, 12110:220–46.
    LNCS. Cham: Springer Nature, 2020. <a href="https://doi.org/10.1007/978-3-030-45374-9_8">https://doi.org/10.1007/978-3-030-45374-9_8</a>.'
  ieee: 'S. Chakraborty, M. Prabhakaran, and D. Wichs, “Witness maps and applications,”
    in <i>Public-Key Cryptography</i>, vol. 12110, A. Kiayias, Ed. Cham: Springer
    Nature, 2020, pp. 220–246.'
  ista: 'Chakraborty S, Prabhakaran M, Wichs D. 2020.Witness maps and applications.
    In: Public-Key Cryptography. vol. 12110, 220–246.'
  mla: Chakraborty, Suvradip, et al. “Witness Maps and Applications.” <i>Public-Key
    Cryptography</i>, edited by A Kiayias, vol. 12110, Springer Nature, 2020, pp.
    220–46, doi:<a href="https://doi.org/10.1007/978-3-030-45374-9_8">10.1007/978-3-030-45374-9_8</a>.
  short: S. Chakraborty, M. Prabhakaran, D. Wichs, in:, A. Kiayias (Ed.), Public-Key
    Cryptography, Springer Nature, Cham, 2020, pp. 220–246.
corr_author: '1'
date_created: 2022-03-18T11:35:51Z
date_published: 2020-04-29T00:00:00Z
date_updated: 2026-04-16T10:21:31Z
day: '29'
doi: 10.1007/978-3-030-45374-9_8
editor:
- first_name: A
  full_name: Kiayias, A
  last_name: Kiayias
external_id:
  isi:
  - '001299210200008'
intvolume: '     12110'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2020/090
month: '04'
oa: 1
oa_version: Preprint
page: 220-246
place: Cham
publication: Public-Key Cryptography
publication_identifier:
  eisbn:
  - '9783030453749'
  eissn:
  - 1611-3349
  isbn:
  - '9783030453732'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Witness maps and applications
type: book_chapter
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 12110
year: '2020'
...
---
_id: '11501'
abstract:
- lang: eng
  text: We investigated the ultraviolet (UV) spectral properties of faint Lyman-α
    emitters (LAEs) in the redshift range 2.9 ≤ z ≤ 4.6, and we provide material to
    prepare future observations of the faint Universe. We used data from the MUSE
    Hubble Ultra Deep Survey to construct mean rest-frame spectra of continuum-faint
    (median MUV of −18 and down to MUV of −16), low stellar mass (median value of
    108.4 M⊙ and down to 107 M⊙) LAEs at redshift z ≳ 3. We computed various averaged
    spectra of LAEs, subsampled on the basis of their observational (e.g., Lyα strength,
    UV magnitude and spectral slope) and physical (e.g., stellar mass and star-formation
    rate) properties. We searched for UV spectral features other than Lyα, such as
    higher ionization nebular emission lines and absorption features. We successfully
    observed the O III]λ1666 and [C III]λ1907+C III]λ1909 collisionally excited emission
    lines and the He IIλ1640 recombination feature, as well as the resonant C IVλλ1548,1551
    doublet either in emission or P-Cygni. We compared the observed spectral properties
    of the different mean spectra and find the emission lines to vary with the observational
    and physical properties of the LAEs. In particular, the mean spectra of LAEs with
    larger Lyα equivalent widths, fainter UV magnitudes, bluer UV spectral slopes,
    and lower stellar masses show the strongest nebular emission. The line ratios
    of these lines are similar to those measured in the spectra of local metal-poor
    galaxies, while their equivalent widths are weaker compared to the handful of
    extreme values detected in individual spectra of z >  2 galaxies. This suggests
    that weak UV features are likely ubiquitous in high z, low-mass, and faint LAEs.
    We publicly released the stacked spectra, as they can serve as empirical templates
    for the design of future observations, such as those with the James Webb Space
    Telescope and the Extremely Large Telescope.
acknowledgement: 'We thank Margherita Talia, Stéphane Charlot, Adele Plat and Alba
  Vidal-García for helpful discussions. This work is supported by the ERC advanced
  grant 339659-MUSICOS (R. Bacon). AF acknowledges the support from grant PRIN MIUR
  2017 20173ML3WW. MVM and JP would like to thank the Leiden/ESA Astrophysics Program
  for Summer Students (LEAPS) for funding at the outset of this project. FL, HK, and
  AV acknowledge support from the ERC starting grant ERC-757258-TRIPLE. TH was supported
  by Leading Initiative for Excellent Young Researchers, MEXT, Japan. JB acknowledges
  support by FCT/MCTES through national funds by the grant UID/FIS/04434/2019, UIDB/04434/2020
  and UIDP/04434/2020 and through the Investigador FCT Contract No. IF/01654/2014/CP1215/CT0003.
  HI acknowledges support from JSPS KAKENHI Grant Number JP19K23462. We would also
  like to thank the organizers and participants of the Leiden Lorentz Center workshop:
  Revolutionary Spectroscopy of Today as a Springboard to Webb. This work made use
  of several open source python packages: NUMPY (van der Walt et al. 2011), MATPLOTLIB
  (Hunter 2007), ASTROPY (Astropy Collaboration 2013) and MPDAF (MUSE Python Data
  Analysis Framework, Piqueras et al. 2019).'
article_number: A118
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anna
  full_name: Feltre, Anna
  last_name: Feltre
- first_name: Michael V.
  full_name: Maseda, Michael V.
  last_name: Maseda
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Jayadev
  full_name: Pradeep, Jayadev
  last_name: Pradeep
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
- first_name: Takuya
  full_name: Hashimoto, Takuya
  last_name: Hashimoto
- first_name: Kasper B.
  full_name: Schmidt, Kasper B.
  last_name: Schmidt
- first_name: Jeremy
  full_name: Blaizot, Jeremy
  last_name: Blaizot
- first_name: Jarle
  full_name: Brinchmann, Jarle
  last_name: Brinchmann
- first_name: Leindert
  full_name: Boogaard, Leindert
  last_name: Boogaard
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: David
  full_name: Carton, David
  last_name: Carton
- first_name: Hanae
  full_name: Inami, Hanae
  last_name: Inami
- first_name: Wolfram
  full_name: Kollatschny, Wolfram
  last_name: Kollatschny
- first_name: Raffaella A.
  full_name: Marino, Raffaella A.
  last_name: Marino
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Joop
  full_name: Schaye, Joop
  last_name: Schaye
- first_name: Laurence
  full_name: Tresse, Laurence
  last_name: Tresse
- first_name: Tanya
  full_name: Urrutia, Tanya
  last_name: Urrutia
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
- first_name: Peter M.
  full_name: Weilbacher, Peter M.
  last_name: Weilbacher
citation:
  ama: 'Feltre A, Maseda MV, Bacon R, et al. The MUSE Hubble Ultra Deep Field Survey:
    XV. The mean rest-UV spectra of Lyα emitters at z &#62; 3. <i>Astronomy &#38;
    Astrophysics</i>. 2020;641. doi:<a href="https://doi.org/10.1051/0004-6361/202038133">10.1051/0004-6361/202038133</a>'
  apa: 'Feltre, A., Maseda, M. V., Bacon, R., Pradeep, J., Leclercq, F., Kusakabe,
    H., … Weilbacher, P. M. (2020). The MUSE Hubble Ultra Deep Field Survey: XV. The
    mean rest-UV spectra of Lyα emitters at z &#62; 3. <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202038133">https://doi.org/10.1051/0004-6361/202038133</a>'
  chicago: 'Feltre, Anna, Michael V. Maseda, Roland Bacon, Jayadev Pradeep, Floriane
    Leclercq, Haruka Kusakabe, Lutz Wisotzki, et al. “The MUSE Hubble Ultra Deep Field
    Survey: XV. The Mean Rest-UV Spectra of Lyα Emitters at z &#62; 3.” <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences, 2020. <a href="https://doi.org/10.1051/0004-6361/202038133">https://doi.org/10.1051/0004-6361/202038133</a>.'
  ieee: 'A. Feltre <i>et al.</i>, “The MUSE Hubble Ultra Deep Field Survey: XV. The
    mean rest-UV spectra of Lyα emitters at z &#62; 3,” <i>Astronomy &#38; Astrophysics</i>,
    vol. 641. EDP Sciences, 2020.'
  ista: 'Feltre A, Maseda MV, Bacon R, Pradeep J, Leclercq F, Kusakabe H, Wisotzki
    L, Hashimoto T, Schmidt KB, Blaizot J, Brinchmann J, Boogaard L, Cantalupo S,
    Carton D, Inami H, Kollatschny W, Marino RA, Matthee JJ, Nanayakkara T, Richard
    J, Schaye J, Tresse L, Urrutia T, Verhamme A, Weilbacher PM. 2020. The MUSE Hubble
    Ultra Deep Field Survey: XV. The mean rest-UV spectra of Lyα emitters at z &#62;
    3. Astronomy &#38; Astrophysics. 641, A118.'
  mla: 'Feltre, Anna, et al. “The MUSE Hubble Ultra Deep Field Survey: XV. The Mean
    Rest-UV Spectra of Lyα Emitters at z &#62; 3.” <i>Astronomy &#38; Astrophysics</i>,
    vol. 641, A118, EDP Sciences, 2020, doi:<a href="https://doi.org/10.1051/0004-6361/202038133">10.1051/0004-6361/202038133</a>.'
  short: A. Feltre, M.V. Maseda, R. Bacon, J. Pradeep, F. Leclercq, H. Kusakabe, L.
    Wisotzki, T. Hashimoto, K.B. Schmidt, J. Blaizot, J. Brinchmann, L. Boogaard,
    S. Cantalupo, D. Carton, H. Inami, W. Kollatschny, R.A. Marino, J.J. Matthee,
    T. Nanayakkara, J. Richard, J. Schaye, L. Tresse, T. Urrutia, A. Verhamme, P.M.
    Weilbacher, Astronomy &#38; Astrophysics 641 (2020).
date_created: 2022-07-06T09:38:16Z
date_published: 2020-09-18T00:00:00Z
date_updated: 2022-07-19T09:35:43Z
day: '18'
doi: 10.1051/0004-6361/202038133
extern: '1'
external_id:
  arxiv:
  - '2007.01878'
intvolume: '       641'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: evolution / galaxies: high-redshift / ISM: lines and bands / ultraviolet:
  ISM / ultraviolet: galaxies'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2007.01878
month: '09'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The MUSE Hubble Ultra Deep Field Survey: XV. The mean rest-UV spectra of Lyα
  emitters at z > 3'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 641
year: '2020'
...
---
_id: '11503'
abstract:
- lang: eng
  text: "Context. The Lyα emitter (LAE) fraction, XLAE, is a potentially powerful
    probe of the evolution of the intergalactic neutral hydrogen gas fraction. However,
    uncertainties in the measurement of XLAE are still under debate.\r\nAims. Thanks
    to deep data obtained with the integral field spectrograph Multi Unit Spectroscopic
    Explorer (MUSE), we can measure the evolution of the LAE fraction homogeneously
    over a wide redshift range of z ≈ 3–6 for UV-faint galaxies (down to UV magnitudes
    of M1500 ≈ −17.75). This is a significantly fainter range than in former studies
    (M1500 ≤ −18.75) and it allows us to probe the bulk of the population of high-redshift
    star-forming galaxies.\r\nMethods. We constructed a UV-complete photometric-redshift
    sample following UV luminosity functions and measured the Lyα emission with MUSE
    using the latest (second) data release from the MUSE Hubble Ultra Deep Field Survey.\r\nResults.
    We derived the redshift evolution of XLAE for M1500 ∈ [ − 21.75; −17.75] for the
    first time with a equivalent width range EW(Lyα) ≥ 65 Å and found low values of
    XLAE ≲ 30% at z ≲ 6. The best-fit linear relation is XLAE = 0.07+0.06−0.03z −
    0.22+0.12−0.24. For M1500 ∈ [ − 20.25; −18.75] and EW(Lyα) ≥ 25 Å, our XLAE values
    are consistent with those in the literature within 1σ at z ≲ 5, but our median
    values are systematically lower than reported values over the whole redshift range.
    In addition, we do not find a significant dependence of XLAE on M1500 for EW(Lyα)
    ≥ 50 Å at z ≈ 3–4, in contrast with previous work. The differences in XLAE mainly
    arise from selection biases for Lyman Break Galaxies (LBGs) in the literature:
    UV-faint LBGs are more easily selected if they have strong Lyα emission, hence
    XLAE is biased towards higher values when those samples are used.\r\nConclusions.
    Our results suggest either a lower increase of XLAE towards z ≈ 6 than previously
    suggested, or even a turnover of XLAE at z ≈ 5.5, which may be the signature of
    a late or patchy reionization process. We compared our results with predictions
    from a cosmological galaxy evolution model. We find that a model with a bursty
    star formation (SF) can reproduce our observed LAE fractions much better than
    models where SF is a smooth function of time."
acknowledgement: We thank the anonymous referee for constructive comments and suggestions.
  We would like to express our gratitude to Stephane De Barros and Pablo Arrabal Haro
  for kindly providing their data plotted in Figs. 1, 2, and 8. We are grateful to
  Kazuhiro Shimasaku, Masami Ouchi, Rieko Momose, Daniel Schaerer, Hidenobu Yajima,
  Taku Okamura, Makoto Ando, and Hinako Goto for giving insightful comments and suggestions.
  This work is based on observations taken by VLT, which is operated by European Southern
  Observatory. This research made use of Astropy (http://www.astropy.org), which is
  a community-developed core Python package for Astronomy (Astropy Collaboration 2013,
  2018), MARZ, MPDAF, and matplotlib (Hunter 2007). H.K. acknowledges support from
  Japan Society for the Promotion of Science (JSPS) through the JSPS Research Fellowship
  for Young Scientists and Overseas Challenge Program for Young Researchers. AV acknowledges
  support from the ERC starting grant 757258-TRIPLE and the SNF Professorship 176808-TRIPLE.
  This work was supported by the project FOGHAR (Agence Nationale de la Recherche,
  ANR-13-BS05-0010-02). JB acknowledges support from the ORAGE project from the Agence
  Nationale de la Recherche under grant ANR-14-CE33-0016-03. JR acknowledges support
  from the ERC starting grant 336736-CALENDS. T. H. acknowledges supports by the Grant-inAid
  for Scientic Research 19J01620.
article_number: A12
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Jérémy
  full_name: Blaizot, Jérémy
  last_name: Blaizot
- first_name: Thibault
  full_name: Garel, Thibault
  last_name: Garel
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Takuya
  full_name: Hashimoto, Takuya
  last_name: Hashimoto
- first_name: Hanae
  full_name: Inami, Hanae
  last_name: Inami
- first_name: Simon
  full_name: Conseil, Simon
  last_name: Conseil
- first_name: Bruno
  full_name: Guiderdoni, Bruno
  last_name: Guiderdoni
- first_name: Alyssa B.
  full_name: Drake, Alyssa B.
  last_name: Drake
- first_name: Edmund
  full_name: Christian Herenz, Edmund
  last_name: Christian Herenz
- first_name: Joop
  full_name: Schaye, Joop
  last_name: Schaye
- first_name: Pascal
  full_name: Oesch, Pascal
  last_name: Oesch
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Raffaella
  full_name: Anna Marino, Raffaella
  last_name: Anna Marino
- first_name: Kasper
  full_name: Borello Schmidt, Kasper
  last_name: Borello Schmidt
- first_name: Roser
  full_name: Pelló, Roser
  last_name: Pelló
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: Josephine
  full_name: Kerutt, Josephine
  last_name: Kerutt
- first_name: Guillaume
  full_name: Mahler, Guillaume
  last_name: Mahler
citation:
  ama: 'Kusakabe H, Blaizot J, Garel T, et al. The MUSE Hubble Ultra Deep Field Survey:
    XIV. Evolution of the Lyα emitter fraction from z = 3 to z = 6. <i>Astronomy &#38;
    Astrophysics</i>. 2020;638. doi:<a href="https://doi.org/10.1051/0004-6361/201937340">10.1051/0004-6361/201937340</a>'
  apa: 'Kusakabe, H., Blaizot, J., Garel, T., Verhamme, A., Bacon, R., Richard, J.,
    … Mahler, G. (2020). The MUSE Hubble Ultra Deep Field Survey: XIV. Evolution of
    the Lyα emitter fraction from z = 3 to z = 6. <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/201937340">https://doi.org/10.1051/0004-6361/201937340</a>'
  chicago: 'Kusakabe, Haruka, Jérémy Blaizot, Thibault Garel, Anne Verhamme, Roland
    Bacon, Johan Richard, Takuya Hashimoto, et al. “The MUSE Hubble Ultra Deep Field
    Survey: XIV. Evolution of the Lyα Emitter Fraction from z = 3 to z = 6.” <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences, 2020. <a href="https://doi.org/10.1051/0004-6361/201937340">https://doi.org/10.1051/0004-6361/201937340</a>.'
  ieee: 'H. Kusakabe <i>et al.</i>, “The MUSE Hubble Ultra Deep Field Survey: XIV.
    Evolution of the Lyα emitter fraction from z = 3 to z = 6,” <i>Astronomy &#38;
    Astrophysics</i>, vol. 638. EDP Sciences, 2020.'
  ista: 'Kusakabe H, Blaizot J, Garel T, Verhamme A, Bacon R, Richard J, Hashimoto
    T, Inami H, Conseil S, Guiderdoni B, Drake AB, Christian Herenz E, Schaye J, Oesch
    P, Matthee JJ, Anna Marino R, Borello Schmidt K, Pelló R, Maseda M, Leclercq F,
    Kerutt J, Mahler G. 2020. The MUSE Hubble Ultra Deep Field Survey: XIV. Evolution
    of the Lyα emitter fraction from z = 3 to z = 6. Astronomy &#38; Astrophysics.
    638, A12.'
  mla: 'Kusakabe, Haruka, et al. “The MUSE Hubble Ultra Deep Field Survey: XIV. Evolution
    of the Lyα Emitter Fraction from z = 3 to z = 6.” <i>Astronomy &#38; Astrophysics</i>,
    vol. 638, A12, EDP Sciences, 2020, doi:<a href="https://doi.org/10.1051/0004-6361/201937340">10.1051/0004-6361/201937340</a>.'
  short: H. Kusakabe, J. Blaizot, T. Garel, A. Verhamme, R. Bacon, J. Richard, T.
    Hashimoto, H. Inami, S. Conseil, B. Guiderdoni, A.B. Drake, E. Christian Herenz,
    J. Schaye, P. Oesch, J.J. Matthee, R. Anna Marino, K. Borello Schmidt, R. Pelló,
    M. Maseda, F. Leclercq, J. Kerutt, G. Mahler, Astronomy &#38; Astrophysics 638
    (2020).
date_created: 2022-07-06T09:50:48Z
date_published: 2020-06-03T00:00:00Z
date_updated: 2022-07-19T09:35:20Z
day: '03'
doi: 10.1051/0004-6361/201937340
extern: '1'
external_id:
  arxiv:
  - '2003.12083'
intvolume: '       638'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'dark ages / reionization / first stars / early Universe / cosmology: observations
  / galaxies: evolution / galaxies: high-redshift / intergalactic medium'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2003.12083
month: '06'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The MUSE Hubble Ultra Deep Field Survey: XIV. Evolution of the Lyα emitter
  fraction from z = 3 to z = 6'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 638
year: '2020'
...
---
_id: '11504'
abstract:
- lang: eng
  text: We present spatially resolved maps of six individually-detected Lyman α haloes
    (LAHs) as well as a first statistical analysis of the Lyman α (Lyα) spectral signature
    in the circum-galactic medium of high-redshift star-forming galaxies (−17.5 >
     MUV >  −21.5) using the Multi-Unit Spectroscopic Explorer. Our resolved spectroscopic
    analysis of the LAHs reveals significant intrahalo variations of the Lyα line
    profile. Using a three-dimensional two-component model for the Lyα emission, we
    measured the full width at half maximum (FWHM), the peak velocity shift, and the
    asymmetry of the Lyα line in the core and in the halo of 19 galaxies. We find
    that the Lyα line shape is statistically different in the halo compared to the
    core (in terms of width, peak wavelength, and asymmetry) for ≈40% of our galaxies.
    Similarly to object-by-object based studies and a recent resolved study using
    lensing, we find a correlation between the peak velocity shift and the width of
    the Lyα line both at the interstellar and circum-galactic scales. This trend has
    been predicted by radiative transfer simulations of galactic winds as a result
    of resonant scattering in outflows. While there is a lack of correlation between
    the spectral properties and the spatial scale lengths of our LAHs, we find a correlation
    between the width of the line in the LAH and the halo flux fraction. Interestingly,
    UV bright galaxies (MUV <  −20) show broader, more redshifted, and less asymmetric
    Lyα lines in their haloes. The most significant correlation found is for the FWHM
    of the line and the UV continuum slope of the galaxy, suggesting that the redder
    galaxies have broader Lyα lines. The generally broad and red line shapes found
    in the halo component suggest that the Lyα haloes are powered either by scattering
    processes through an outflowing medium, fluorescent emission from outflowing cold
    clumps of gas, or a mix of both. Considering the large diversity of the Lyα line
    profiles observed in our sample and the lack of strong correlation, the interpretation
    of our results is still broadly open and underlines the need for realistic spatially
    resolved models of the LAHs.
acknowledgement: F.L., R.B., and S.C. acknowledge support from the ERC advanced grant
  339659-MUSICOS. F.L., T.G., H.K., and A.V. acknowledge support from the ERC starting
  grant ERC-757258-TRIPLE. A.C. and J.R. acknowledge support from the ERC starting
  grant 336736-CALENDS. J.B. acknowledges support by FCT/MCTES through national funds
  (PID-DAC) by grant UID/FIS/04434/2019 and through Investigador FCT Contract No.IF/01654/2014/CP1215/CT0003.
  T.H. was supported by Leading Initiative for Excellent Young Researchers, MEXT,
  Japan.
article_number: A82
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
- first_name: Thibault
  full_name: Garel, Thibault
  last_name: Garel
- first_name: Jérémy
  full_name: Blaizot, Jérémy
  last_name: Blaizot
- first_name: Jarle
  full_name: Brinchmann, Jarle
  last_name: Brinchmann
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: Adélaïde
  full_name: Claeyssens, Adélaïde
  last_name: Claeyssens
- first_name: Simon
  full_name: Conseil, Simon
  last_name: Conseil
- first_name: Thierry
  full_name: Contini, Thierry
  last_name: Contini
- first_name: Takuya
  full_name: Hashimoto, Takuya
  last_name: Hashimoto
- first_name: Edmund Christian
  full_name: Herenz, Edmund Christian
  last_name: Herenz
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Raffaella Anna
  full_name: Marino, Raffaella Anna
  last_name: Marino
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Peter
  full_name: Mitchell, Peter
  last_name: Mitchell
- first_name: Gabriele
  full_name: Pezzulli, Gabriele
  last_name: Pezzulli
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Kasper Borello
  full_name: Schmidt, Kasper Borello
  last_name: Schmidt
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
citation:
  ama: 'Leclercq F, Bacon R, Verhamme A, et al. The MUSE Hubble Ultra Deep field survey:
    XIII. Spatially resolved spectral properties of Lyman α haloes around star-forming
    galaxies at z &#62; 3. <i>Astronomy &#38; Astrophysics</i>. 2020;635. doi:<a href="https://doi.org/10.1051/0004-6361/201937339">10.1051/0004-6361/201937339</a>'
  apa: 'Leclercq, F., Bacon, R., Verhamme, A., Garel, T., Blaizot, J., Brinchmann,
    J., … Wisotzki, L. (2020). The MUSE Hubble Ultra Deep field survey: XIII. Spatially
    resolved spectral properties of Lyman α haloes around star-forming galaxies at
    z &#62; 3. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/201937339">https://doi.org/10.1051/0004-6361/201937339</a>'
  chicago: 'Leclercq, Floriane, Roland Bacon, Anne Verhamme, Thibault Garel, Jérémy
    Blaizot, Jarle Brinchmann, Sebastiano Cantalupo, et al. “The MUSE Hubble Ultra
    Deep Field Survey: XIII. Spatially Resolved Spectral Properties of Lyman α Haloes
    around Star-Forming Galaxies at z &#62; 3.” <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences, 2020. <a href="https://doi.org/10.1051/0004-6361/201937339">https://doi.org/10.1051/0004-6361/201937339</a>.'
  ieee: 'F. Leclercq <i>et al.</i>, “The MUSE Hubble Ultra Deep field survey: XIII.
    Spatially resolved spectral properties of Lyman α haloes around star-forming galaxies
    at z &#62; 3,” <i>Astronomy &#38; Astrophysics</i>, vol. 635. EDP Sciences, 2020.'
  ista: 'Leclercq F, Bacon R, Verhamme A, Garel T, Blaizot J, Brinchmann J, Cantalupo
    S, Claeyssens A, Conseil S, Contini T, Hashimoto T, Herenz EC, Kusakabe H, Marino
    RA, Maseda M, Matthee JJ, Mitchell P, Pezzulli G, Richard J, Schmidt KB, Wisotzki
    L. 2020. The MUSE Hubble Ultra Deep field survey: XIII. Spatially resolved spectral
    properties of Lyman α haloes around star-forming galaxies at z &#62; 3. Astronomy
    &#38; Astrophysics. 635, A82.'
  mla: 'Leclercq, Floriane, et al. “The MUSE Hubble Ultra Deep Field Survey: XIII.
    Spatially Resolved Spectral Properties of Lyman α Haloes around Star-Forming Galaxies
    at z &#62; 3.” <i>Astronomy &#38; Astrophysics</i>, vol. 635, A82, EDP Sciences,
    2020, doi:<a href="https://doi.org/10.1051/0004-6361/201937339">10.1051/0004-6361/201937339</a>.'
  short: F. Leclercq, R. Bacon, A. Verhamme, T. Garel, J. Blaizot, J. Brinchmann,
    S. Cantalupo, A. Claeyssens, S. Conseil, T. Contini, T. Hashimoto, E.C. Herenz,
    H. Kusakabe, R.A. Marino, M. Maseda, J.J. Matthee, P. Mitchell, G. Pezzulli, J.
    Richard, K.B. Schmidt, L. Wisotzki, Astronomy &#38; Astrophysics 635 (2020).
date_created: 2022-07-06T09:56:20Z
date_published: 2020-03-11T00:00:00Z
date_updated: 2022-07-19T09:36:58Z
day: '11'
doi: 10.1051/0004-6361/201937339
extern: '1'
external_id:
  arxiv:
  - '2002.05731'
intvolume: '       635'
keyword:
- Space and Planetary Science
- 'Astronomy and Astrophysics galaxies: high-redshift / galaxies: formation / galaxies:
  evolution / cosmology: observations'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2002.05731
month: '03'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The MUSE Hubble Ultra Deep field survey: XIII. Spatially resolved spectral
  properties of Lyman α haloes around star-forming galaxies at z > 3'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 635
year: '2020'
...
---
_id: '11513'
abstract:
- lang: eng
  text: We report the spectroscopic confirmation of a new protocluster in the COSMOS
    field at z ∼ 2.2, COSMOS Cluster 2.2 (CC2.2), originally identified as an overdensity
    of narrowband selected Hα emitting candidates. With only two masks of Keck/MOSFIRE
    near-IR spectroscopy in both H (∼1.47–1.81 μm) and K (∼1.92–2.40 μm) bands (∼1.5
    hr each), we confirm 35 unique protocluster members with at least two emission
    lines detected with S/N > 3. Combined with 12 extra members from the zCOSMOS-deep
    spectroscopic survey (47 in total), we estimate a mean redshift and a line-of-sight
    velocity dispersion of zmean = 2.23224 ± 0.00101 and σlos = 645 ± 69 km s−1 for
    this protocluster, respectively. Assuming virialization and spherical symmetry
    for the system, we estimate a total mass of Mvir ∼ (1–2) ×1014M⊙ for the structure.
    We evaluate a number density enhancement of δg ∼ 7 for this system and we argue
    that the structure is likely not fully virialized at z ∼ 2.2. However, in a spherical
    collapse model, δg is expected to grow to a linear matter enhancement of ∼1.9
    by z = 0, exceeding the collapse threshold of 1.69, and leading to a fully collapsed
    and virialized Coma-type structure with a total mass of Mdyn(z = 0) ∼ 9.2 × 1014M⊙
    by now. This observationally efficient confirmation suggests that large narrowband
    emission-line galaxy surveys, when combined with ancillary photometric data, can
    be used to effectively trace the large-scale structure and protoclusters at a
    time when they are mostly dominated by star-forming galaxies.
acknowledgement: We are thankful to the anonymous referee for useful comments and
  suggestions that improved the quality of this paper. B.D. acknowledges financial
  support from NASA through the Astrophysics Data Analysis Program (ADAP), grant number
  NNX12AE20G, and the National Science Foundation, grant number 1716907. B.D. is thankful
  to Andreas Faisst, Laura Danly, and Matthew Burlando for their companionship during
  the observing run. B.D. is grateful to the COSMOS team for their useful comments
  during the team meeting in New York City 2019 May 14–17. A.R. research was made
  possible by Friends of W. M. Keck Observatory who philanthropically support the
  Keck Science Collaborative (KSC) fund. The observations presented herein were obtained
  at the W. M. Keck Observatory (program C236, PI Scoville), which is operated as
  a scientific partnership among the California Institute of Technology, the University
  of California, and the National Aeronautics and Space Administration. The Observatory
  was made possible by the generous financial support of the W. M. Keck Foundation.
  The authors would like to recognize and acknowledge the very prominent cultural
  role and reverence that the summit of Maunakea has always had within the indigenous
  Hawaiian community. We are fortunate to have the opportunity to perform observations
  from this mountain.
article_number: '8'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Behnam
  full_name: Darvish, Behnam
  last_name: Darvish
- first_name: Nick Z.
  full_name: Scoville, Nick Z.
  last_name: Scoville
- first_name: Christopher
  full_name: Martin, Christopher
  last_name: Martin
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Bahram
  full_name: Mobasher, Bahram
  last_name: Mobasher
- first_name: Alessandro
  full_name: Rettura, Alessandro
  last_name: Rettura
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Peter
  full_name: Capak, Peter
  last_name: Capak
- first_name: Nima
  full_name: Chartab, Nima
  last_name: Chartab
- first_name: Shoubaneh
  full_name: Hemmati, Shoubaneh
  last_name: Hemmati
- first_name: Daniel
  full_name: Masters, Daniel
  last_name: Masters
- first_name: Hooshang
  full_name: Nayyeri, Hooshang
  last_name: Nayyeri
- first_name: Donal
  full_name: O’Sullivan, Donal
  last_name: O’Sullivan
- first_name: Ana
  full_name: Paulino-Afonso, Ana
  last_name: Paulino-Afonso
- first_name: Zahra
  full_name: Sattari, Zahra
  last_name: Sattari
- first_name: Abtin
  full_name: Shahidi, Abtin
  last_name: Shahidi
- first_name: Mara
  full_name: Salvato, Mara
  last_name: Salvato
- first_name: Brian C.
  full_name: Lemaux, Brian C.
  last_name: Lemaux
- first_name: Olivier Le
  full_name: Fèvre, Olivier Le
  last_name: Fèvre
- first_name: Olga
  full_name: Cucciati, Olga
  last_name: Cucciati
citation:
  ama: Darvish B, Scoville NZ, Martin C, et al. Spectroscopic confirmation of a coma
    cluster progenitor at z ∼ 2.2. <i>The Astrophysical Journal</i>. 2020;892(1).
    doi:<a href="https://doi.org/10.3847/1538-4357/ab75c3">10.3847/1538-4357/ab75c3</a>
  apa: Darvish, B., Scoville, N. Z., Martin, C., Sobral, D., Mobasher, B., Rettura,
    A., … Cucciati, O. (2020). Spectroscopic confirmation of a coma cluster progenitor
    at z ∼ 2.2. <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ab75c3">https://doi.org/10.3847/1538-4357/ab75c3</a>
  chicago: Darvish, Behnam, Nick Z. Scoville, Christopher Martin, David Sobral, Bahram
    Mobasher, Alessandro Rettura, Jorryt J Matthee, et al. “Spectroscopic Confirmation
    of a Coma Cluster Progenitor at z ∼ 2.2.” <i>The Astrophysical Journal</i>. IOP
    Publishing, 2020. <a href="https://doi.org/10.3847/1538-4357/ab75c3">https://doi.org/10.3847/1538-4357/ab75c3</a>.
  ieee: B. Darvish <i>et al.</i>, “Spectroscopic confirmation of a coma cluster progenitor
    at z ∼ 2.2,” <i>The Astrophysical Journal</i>, vol. 892, no. 1. IOP Publishing,
    2020.
  ista: Darvish B, Scoville NZ, Martin C, Sobral D, Mobasher B, Rettura A, Matthee
    JJ, Capak P, Chartab N, Hemmati S, Masters D, Nayyeri H, O’Sullivan D, Paulino-Afonso
    A, Sattari Z, Shahidi A, Salvato M, Lemaux BC, Fèvre OL, Cucciati O. 2020. Spectroscopic
    confirmation of a coma cluster progenitor at z ∼ 2.2. The Astrophysical Journal.
    892(1), 8.
  mla: Darvish, Behnam, et al. “Spectroscopic Confirmation of a Coma Cluster Progenitor
    at z ∼ 2.2.” <i>The Astrophysical Journal</i>, vol. 892, no. 1, 8, IOP Publishing,
    2020, doi:<a href="https://doi.org/10.3847/1538-4357/ab75c3">10.3847/1538-4357/ab75c3</a>.
  short: B. Darvish, N.Z. Scoville, C. Martin, D. Sobral, B. Mobasher, A. Rettura,
    J.J. Matthee, P. Capak, N. Chartab, S. Hemmati, D. Masters, H. Nayyeri, D. O’Sullivan,
    A. Paulino-Afonso, Z. Sattari, A. Shahidi, M. Salvato, B.C. Lemaux, O.L. Fèvre,
    O. Cucciati, The Astrophysical Journal 892 (2020).
date_created: 2022-07-06T13:10:51Z
date_published: 2020-03-19T00:00:00Z
date_updated: 2022-07-19T09:31:35Z
day: '19'
doi: 10.3847/1538-4357/ab75c3
extern: '1'
external_id:
  arxiv:
  - '2002.06207'
intvolume: '       892'
issue: '1'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2002.06207
month: '03'
oa: 1
oa_version: Preprint
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Spectroscopic confirmation of a coma cluster progenitor at z ∼ 2.2
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 892
year: '2020'
...
---
_id: '11530'
abstract:
- lang: eng
  text: A prediction of the classic active galactic nucleus (AGN) unification model
    is the presence of ionization cones with different orientations depending on the
    AGN type. Confirmations of this model exist for present times, but it is less
    clear in the early Universe. Here, we use the morphology of giant Ly α nebulae
    around AGNs at redshift z ∼ 3 to probe AGN emission and therefore the validity
    of the AGN unification model at this redshift. We compare the spatial morphology
    of 19 nebulae previously found around type I AGNs with a new sample of four Ly α
    nebulae detected around type II AGNs. Using two independent techniques, we find
    that nebulae around type II AGNs are more asymmetric than around type I, at least
    at radial distances r > 30 physical kpc (pkpc) from the ionizing source. We conclude
    that the type I and type II AGNs in our sample show evidence of different surrounding
    ionizing geometries. This suggests that the classical AGN unification model is
    also valid for high-redshift sources. Finally, we discuss how the lack of asymmetry
    in the inner parts (r ≲ 30 pkpc) and the associated high values of the He II to
    Ly α ratios in these regions could indicate additional sources of (hard) ionizing
    radiation originating within or in proximity of the AGN host galaxies. This work
    demonstrates that the morphologies of giant Ly α nebulae can be used to understand
    and study the geometry of high-redshift AGNs on circumnuclear scales and it lays
    the foundation for future studies using much larger statistical samples.
acknowledgement: SC and GP gratefully acknowledge support from Swiss National Science
  Foundation grant PP00P2 163824. MK acknowledges support by DLR500R1904.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: J S
  full_name: den Brok, J S
  last_name: den Brok
- first_name: S
  full_name: Cantalupo, S
  last_name: Cantalupo
- first_name: R
  full_name: Mackenzie, R
  last_name: Mackenzie
- first_name: R A
  full_name: Marino, R A
  last_name: Marino
- first_name: G
  full_name: Pezzulli, G
  last_name: Pezzulli
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: S D
  full_name: Johnson, S D
  last_name: Johnson
- first_name: M
  full_name: Krumpe, M
  last_name: Krumpe
- first_name: T
  full_name: Urrutia, T
  last_name: Urrutia
- first_name: W
  full_name: Kollatschny, W
  last_name: Kollatschny
citation:
  ama: den Brok JS, Cantalupo S, Mackenzie R, et al. Probing the AGN unification model
    at redshift z ∼ 3 with MUSE observations of giant Lyα nebulae. <i>Monthly Notices
    of the Royal Astronomical Society</i>. 2020;495(2):1874-1887. doi:<a href="https://doi.org/10.1093/mnras/staa1269">10.1093/mnras/staa1269</a>
  apa: den Brok, J. S., Cantalupo, S., Mackenzie, R., Marino, R. A., Pezzulli, G.,
    Matthee, J. J., … Kollatschny, W. (2020). Probing the AGN unification model at
    redshift z ∼ 3 with MUSE observations of giant Lyα nebulae. <i>Monthly Notices
    of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa1269">https://doi.org/10.1093/mnras/staa1269</a>
  chicago: den Brok, J S, S Cantalupo, R Mackenzie, R A Marino, G Pezzulli, Jorryt
    J Matthee, S D Johnson, M Krumpe, T Urrutia, and W Kollatschny. “Probing the AGN
    Unification Model at Redshift z ∼ 3 with MUSE Observations of Giant Lyα Nebulae.”
    <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press,
    2020. <a href="https://doi.org/10.1093/mnras/staa1269">https://doi.org/10.1093/mnras/staa1269</a>.
  ieee: J. S. den Brok <i>et al.</i>, “Probing the AGN unification model at redshift
    z ∼ 3 with MUSE observations of giant Lyα nebulae,” <i>Monthly Notices of the
    Royal Astronomical Society</i>, vol. 495, no. 2. Oxford University Press, pp.
    1874–1887, 2020.
  ista: den Brok JS, Cantalupo S, Mackenzie R, Marino RA, Pezzulli G, Matthee JJ,
    Johnson SD, Krumpe M, Urrutia T, Kollatschny W. 2020. Probing the AGN unification
    model at redshift z ∼ 3 with MUSE observations of giant Lyα nebulae. Monthly Notices
    of the Royal Astronomical Society. 495(2), 1874–1887.
  mla: den Brok, J. S., et al. “Probing the AGN Unification Model at Redshift z ∼
    3 with MUSE Observations of Giant Lyα Nebulae.” <i>Monthly Notices of the Royal
    Astronomical Society</i>, vol. 495, no. 2, Oxford University Press, 2020, pp.
    1874–87, doi:<a href="https://doi.org/10.1093/mnras/staa1269">10.1093/mnras/staa1269</a>.
  short: J.S. den Brok, S. Cantalupo, R. Mackenzie, R.A. Marino, G. Pezzulli, J.J.
    Matthee, S.D. Johnson, M. Krumpe, T. Urrutia, W. Kollatschny, Monthly Notices
    of the Royal Astronomical Society 495 (2020) 1874–1887.
date_created: 2022-07-07T10:40:17Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2022-08-18T11:17:47Z
day: '01'
doi: 10.1093/mnras/staa1269
extern: '1'
external_id:
  arxiv:
  - '2005.01732'
intvolume: '       495'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: active'
- 'galaxies: high-redshift'
- intergalactic medium
- 'quasars: emission lines'
- 'quasars: general'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2005.01732
month: '06'
oa: 1
oa_version: Preprint
page: 1874-1887
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Probing the AGN unification model at redshift z ∼ 3 with MUSE observations
  of giant Lyα nebulae
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 495
year: '2020'
...
---
_id: '11531'
abstract:
- lang: eng
  text: While low-luminosity galaxies dominate number counts at all redshifts, their
    contribution to cosmic reionization is poorly understood due to a lack of knowledge
    of their physical properties. We isolate a sample of 35 z ≈ 4–5 continuum-faint
    Lyman-α emitters from deep VLT/MUSE spectroscopy and directly measure their H α
    emission using stacked Spitzer/IRAC Ch. 1 photometry. Based on Hubble Space Telescope
    imaging, we determine that the average UV continuum magnitude is fainter than
    −16 (≈ 0.01 L⋆), implying a median Lyman-α equivalent width of 259 Å. By combining
    the H α measurement with the UV magnitude, we determine the ionizing photon production
    efficiency, ξion, a first for such faint galaxies. The measurement of log10 (ξion
    [Hz erg−1]) = 26.28 (⁠+0.28−0.40⁠) is in excess of literature measurements of
    both continuum- and emission line-selected samples, implying a more efficient
    production of ionizing photons in these lower luminosity, Lyman-α-selected systems.
    We conclude that this elevated efficiency can be explained by stellar populations
    with metallicities between 4 × 10−4 and 0.008, with light-weighted ages less than
    3 Myr.
acknowledgement: 'We would like to thank the anonymous referee for a thoughtful report
  and suggestions that have improved this manuscript. We are also grateful to everyone
  involved in the Spitzer Space Telescope mission and everyone at the Spitzer Science
  Center: we are truly fortunate to have been able to use data from this facility.
  J. B. acknowledges support by FCT/MCTES through national funds by this grant UID/FIS/04434/2019
  and through the Investigador FCT contract no. IF/01654/2014/CP1215/CT0003. S. C.
  gratefully acknowledges support from Swiss National Science Foundation grant PP00P2
  163824. We would also like to thank Mauro Stefanon for his assistance with de-blending
  the IRAC photometry, Pieter van Dokkum for a number of useful suggestions, and Daniel
  Schaerer for information regarding the stellar population models. This study is
  based on observations made with ESO telescopes at the La Silla Paranal Observatory
  under programs IDs 094.A-2089(B), 095.A0010(A), 096.A-0045(A), and 096.A-0045(B).'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Michael V
  full_name: Maseda, Michael V
  last_name: Maseda
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Daniel
  full_name: Lam, Daniel
  last_name: Lam
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Jarle
  full_name: Brinchmann, Jarle
  last_name: Brinchmann
- first_name: Joop
  full_name: Schaye, Joop
  last_name: Schaye
- first_name: Ivo
  full_name: Labbe, Ivo
  last_name: Labbe
- first_name: Kasper B
  full_name: Schmidt, Kasper B
  last_name: Schmidt
- first_name: Leindert
  full_name: Boogaard, Leindert
  last_name: Boogaard
- first_name: Rychard
  full_name: Bouwens, Rychard
  last_name: Bouwens
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: Marijn
  full_name: Franx, Marijn
  last_name: Franx
- first_name: Takuya
  full_name: Hashimoto, Takuya
  last_name: Hashimoto
- first_name: Hanae
  full_name: Inami, Hanae
  last_name: Inami
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Guillaume
  full_name: Mahler, Guillaume
  last_name: Mahler
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
citation:
  ama: Maseda MV, Bacon R, Lam D, et al. Elevated ionizing photon production efficiency
    in faint high-equivalent-width Lyman-α emitters. <i>Monthly Notices of the Royal
    Astronomical Society</i>. 2020;493(4):5120-5130. doi:<a href="https://doi.org/10.1093/mnras/staa622">10.1093/mnras/staa622</a>
  apa: Maseda, M. V., Bacon, R., Lam, D., Matthee, J. J., Brinchmann, J., Schaye,
    J., … Wisotzki, L. (2020). Elevated ionizing photon production efficiency in faint
    high-equivalent-width Lyman-α emitters. <i>Monthly Notices of the Royal Astronomical
    Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa622">https://doi.org/10.1093/mnras/staa622</a>
  chicago: Maseda, Michael V, Roland Bacon, Daniel Lam, Jorryt J Matthee, Jarle Brinchmann,
    Joop Schaye, Ivo Labbe, et al. “Elevated Ionizing Photon Production Efficiency
    in Faint High-Equivalent-Width Lyman-α Emitters.” <i>Monthly Notices of the Royal
    Astronomical Society</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1093/mnras/staa622">https://doi.org/10.1093/mnras/staa622</a>.
  ieee: M. V. Maseda <i>et al.</i>, “Elevated ionizing photon production efficiency
    in faint high-equivalent-width Lyman-α emitters,” <i>Monthly Notices of the Royal
    Astronomical Society</i>, vol. 493, no. 4. Oxford University Press, pp. 5120–5130,
    2020.
  ista: Maseda MV, Bacon R, Lam D, Matthee JJ, Brinchmann J, Schaye J, Labbe I, Schmidt
    KB, Boogaard L, Bouwens R, Cantalupo S, Franx M, Hashimoto T, Inami H, Kusakabe
    H, Mahler G, Nanayakkara T, Richard J, Wisotzki L. 2020. Elevated ionizing photon
    production efficiency in faint high-equivalent-width Lyman-α emitters. Monthly
    Notices of the Royal Astronomical Society. 493(4), 5120–5130.
  mla: Maseda, Michael V., et al. “Elevated Ionizing Photon Production Efficiency
    in Faint High-Equivalent-Width Lyman-α Emitters.” <i>Monthly Notices of the Royal
    Astronomical Society</i>, vol. 493, no. 4, Oxford University Press, 2020, pp.
    5120–30, doi:<a href="https://doi.org/10.1093/mnras/staa622">10.1093/mnras/staa622</a>.
  short: M.V. Maseda, R. Bacon, D. Lam, J.J. Matthee, J. Brinchmann, J. Schaye, I.
    Labbe, K.B. Schmidt, L. Boogaard, R. Bouwens, S. Cantalupo, M. Franx, T. Hashimoto,
    H. Inami, H. Kusakabe, G. Mahler, T. Nanayakkara, J. Richard, L. Wisotzki, Monthly
    Notices of the Royal Astronomical Society 493 (2020) 5120–5130.
date_created: 2022-07-07T10:46:41Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2022-08-18T11:23:27Z
day: '01'
doi: 10.1093/mnras/staa622
extern: '1'
external_id:
  arxiv:
  - '2002.11117'
intvolume: '       493'
issue: '4'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'Galaxies: evolution'
- 'Galaxies: high-redshift'
- 'Galaxies: ISM'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/mnras/staa622
month: '04'
oa: 1
oa_version: Published Version
page: 5120-5130
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Elevated ionizing photon production efficiency in faint high-equivalent-width
  Lyman-α emitters
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 493
year: '2020'
...
---
_id: '11533'
abstract:
- lang: eng
  text: We explore deep rest-frame UV to FIR data in the COSMOS field to measure the
    individual spectral energy distributions (SED) of the ∼4000 SC4K (Sobral et al.)
    Lyman α (Ly α) emitters (LAEs) at z ∼ 2–6. We find typical stellar masses of 109.3
    ± 0.6 M⊙ and star formation rates (SFR) of SFRSED=4.4+10.5−2.4 M⊙ yr−1 and SFRLyα=5.9+6.3−2.6 M⊙ yr−1,
    combined with very blue UV slopes of β=−2.1+0.5−0.4⁠, but with significant variations
    within the population. MUV and β are correlated in a similar way to UV-selected
    sources, but LAEs are consistently bluer. This suggests that LAEs are the youngest
    and/or most dust-poor subset of the UV-selected population. We also study the
    Ly α rest-frame equivalent width (EW0) and find 45 ‘extreme’ LAEs with EW0 > 240 Å
    (3σ), implying a low number density of (7 ± 1) × 10−7 Mpc−3. Overall, we measure
    little to no evolution of the Ly α EW0 and scale length parameter (w0), which
    are consistently high (EW0=140+280−70 Å, w0=129+11−11 Å) from z ∼ 6 to z ∼ 2 and
    below. However, w0 is anticorrelated with MUV and stellar mass. Our results imply
    that sources selected as LAEs have a high Ly α escape fraction (fesc,Ly α) irrespective
    of cosmic time, but fesc,Ly α is still higher for UV-fainter and lower mass LAEs.
    The least massive LAEs (<109.5 M⊙) are typically located above the star formation
    ‘main sequence’ (MS), but the offset from the MS decreases towards z ∼ 6 and towards
    1010 M⊙. Our results imply a lack of evolution in the properties of LAEs across
    time and reveals the increasing overlap in properties of LAEs and UV-continuum
    selected galaxies as typical star-forming galaxies at high redshift effectively
    become LAEs.
acknowledgement: We thank the anonymous referee for the valuable feedback that significantly
  improved the quality and clarity of this paper. SS and JC acknowledge studentships
  from Lancaster University. APA acknowledges support from Fundação para a Ciência
  e a Tecnologia through the project PTDC/FISAST/31546/2017. The authors would like
  to thank Ali Khostovan, Sara Perez Sanchez, Alex Bennett and Tom Rose for contributions
  and discussions in the early stages of this work. Based on data products from observations
  made with ESO Telescopes at the La Silla Paranal Observatory under ESO programme
  ID 179.A-2005 and on data products produced by CALET and the Cambridge Astronomy
  Survey Unit on behalf of the UltraVISTA consortium. Finally, the authors acknowledge
  the unique value of the publicly available analysis software TOPCAT (Taylor 2005)
  and publicly available programming language Python, including the numpy, pyfits,
  matplotlib, scipy and astropy (Astropy Collaboration et al. 2013) packages. This
  work is based on the public SC4K sample of LAEs (Sobral et al. 2018a) and we release
  the full catalogue with all the photometry and properties derived in this paper,
  in electronic format, along with the relevant tables.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: S
  full_name: Santos, S
  last_name: Santos
- first_name: D
  full_name: Sobral, D
  last_name: Sobral
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: J
  full_name: Calhau, J
  last_name: Calhau
- first_name: E
  full_name: da Cunha, E
  last_name: da Cunha
- first_name: B
  full_name: Ribeiro, B
  last_name: Ribeiro
- first_name: A
  full_name: Paulino-Afonso, A
  last_name: Paulino-Afonso
- first_name: P
  full_name: Arrabal Haro, P
  last_name: Arrabal Haro
- first_name: J
  full_name: Butterworth, J
  last_name: Butterworth
citation:
  ama: Santos S, Sobral D, Matthee JJ, et al. The evolution of rest-frame UV properties,
    Ly α EWs, and the SFR–stellar mass relation at z ∼ 2–6 for SC4K LAEs. <i>Monthly
    Notices of the Royal Astronomical Society</i>. 2020;493(1):141-160. doi:<a href="https://doi.org/10.1093/mnras/staa093">10.1093/mnras/staa093</a>
  apa: Santos, S., Sobral, D., Matthee, J. J., Calhau, J., da Cunha, E., Ribeiro,
    B., … Butterworth, J. (2020). The evolution of rest-frame UV properties, Ly α
    EWs, and the SFR–stellar mass relation at z ∼ 2–6 for SC4K LAEs. <i>Monthly Notices
    of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa093">https://doi.org/10.1093/mnras/staa093</a>
  chicago: Santos, S, D Sobral, Jorryt J Matthee, J Calhau, E da Cunha, B Ribeiro,
    A Paulino-Afonso, P Arrabal Haro, and J Butterworth. “The Evolution of Rest-Frame
    UV Properties, Ly α EWs, and the SFR–Stellar Mass Relation at z ∼ 2–6 for SC4K
    LAEs.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University
    Press, 2020. <a href="https://doi.org/10.1093/mnras/staa093">https://doi.org/10.1093/mnras/staa093</a>.
  ieee: S. Santos <i>et al.</i>, “The evolution of rest-frame UV properties, Ly α
    EWs, and the SFR–stellar mass relation at z ∼ 2–6 for SC4K LAEs,” <i>Monthly Notices
    of the Royal Astronomical Society</i>, vol. 493, no. 1. Oxford University Press,
    pp. 141–160, 2020.
  ista: Santos S, Sobral D, Matthee JJ, Calhau J, da Cunha E, Ribeiro B, Paulino-Afonso
    A, Arrabal Haro P, Butterworth J. 2020. The evolution of rest-frame UV properties,
    Ly α EWs, and the SFR–stellar mass relation at z ∼ 2–6 for SC4K LAEs. Monthly
    Notices of the Royal Astronomical Society. 493(1), 141–160.
  mla: Santos, S., et al. “The Evolution of Rest-Frame UV Properties, Ly α EWs, and
    the SFR–Stellar Mass Relation at z ∼ 2–6 for SC4K LAEs.” <i>Monthly Notices of
    the Royal Astronomical Society</i>, vol. 493, no. 1, Oxford University Press,
    2020, pp. 141–60, doi:<a href="https://doi.org/10.1093/mnras/staa093">10.1093/mnras/staa093</a>.
  short: S. Santos, D. Sobral, J.J. Matthee, J. Calhau, E. da Cunha, B. Ribeiro, A.
    Paulino-Afonso, P. Arrabal Haro, J. Butterworth, Monthly Notices of the Royal
    Astronomical Society 493 (2020) 141–160.
date_created: 2022-07-07T12:05:23Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2022-08-18T11:27:43Z
day: '01'
doi: 10.1093/mnras/staa093
extern: '1'
external_id:
  arxiv:
  - '1910.02959'
intvolume: '       493'
issue: '1'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: evolution'
- 'galaxies: formation'
- 'galaxies: high-redshift'
- 'galaxies: star formation'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1910.02959
month: '03'
oa: 1
oa_version: Preprint
page: 141-160
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The evolution of rest-frame UV properties, Ly α EWs, and the SFR–stellar mass
  relation at z ∼ 2–6 for SC4K LAEs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 493
year: '2020'
...
---
_id: '11539'
abstract:
- lang: eng
  text: 'Despite recent progress in understanding Ly α emitters (LAEs), relatively
    little is known regarding their typical black hole activity across cosmic time.
    Here, we study the X-ray and radio properties of ∼4000 LAEs at 2.2 < z < 6 from
    the SC4K survey in the COSMOS field. We detect 254 (⁠6.8per cent±0.4per cent⁠)
    LAEs individually in the X-rays (S/N > 3) with an average luminosity of 1044.31±0.01ergs−1
    and average black hole accretion rate (BHAR) of 0.72±0.01 M⊙ yr−1, consistent
    with moderate to high accreting active galactic neuclei (AGNs). We detect 120
    sources in deep radio data (radio AGN fraction of 3.2per cent±0.3per cent⁠). The
    global AGN fraction (⁠8.6per cent±0.4per cent⁠) rises with Ly α luminosity and
    declines with increasing redshift. For X-ray-detected LAEs, Ly α luminosities
    correlate with the BHARs, suggesting that Ly α luminosity becomes a BHAR indicator.
    Most LAEs (⁠93.1per cent±0.6per cent⁠) at 2 < z < 6 have no detectable X-ray emission
    (BHARs < 0.017 M⊙ yr−1). The median star formation rate (SFR) of star-forming
    LAEs from Ly α and radio luminosities is 7.6+6.6−2.8 M⊙ yr−1. The black hole to
    galaxy growth ratio (BHAR/SFR) for LAEs is <0.0022, consistent with typical star-forming
    galaxies and the local BHAR/SFR relation. We conclude that LAEs at 2 < z < 6 include
    two different populations: an AGN population, where Ly α luminosity traces BHAR,
    and another with low SFRs which remain undetected in even the deepest X-ray stacks
    but is detected in the radio stacks.'
acknowledgement: JM acknowledges the support of a Huygens PhD fellowship from Leiden
  University. We thank Camila Correa for help analysing snipshot merger trees. We
  thank the anonymous referee for constructive comments. We also thank Jarle Brinchmann,
  Rob Crain, Antonios Katsianis, Paola Popesso, and David Sobral for discussions and
  suggestions. We also thank the participants of the Lorentz Center workshop ‘A Decade
  of the Star-Forming Main Sequence’ held on 2017 September 4–8, for discussions and
  ideas. We have benefited from the public available programming language PYTHON,
  including the NUMPY, MATPLOTLIB, and SCIPY (Hunter 2007) packages and the TOPCAT
  analysis tool (Taylor 2013).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: João
  full_name: Calhau, João
  last_name: Calhau
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Sérgio
  full_name: Santos, Sérgio
  last_name: Santos
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Ana
  full_name: Paulino-Afonso, Ana
  last_name: Paulino-Afonso
- first_name: Andra
  full_name: Stroe, Andra
  last_name: Stroe
- first_name: Brooke
  full_name: Simmons, Brooke
  last_name: Simmons
- first_name: Cassandra
  full_name: Barlow-Hall, Cassandra
  last_name: Barlow-Hall
- first_name: Benjamin
  full_name: Adams, Benjamin
  last_name: Adams
citation:
  ama: 'Calhau J, Sobral D, Santos S, et al. The X-ray and radio activity of typical
    and luminous Ly α emitters from z ∼ 2 to z ∼ 6: Evidence for a diverse, evolving
    population. <i>Monthly Notices of the Royal Astronomical Society</i>. 2020;493(3):3341-3362.
    doi:<a href="https://doi.org/10.1093/mnras/staa476">10.1093/mnras/staa476</a>'
  apa: 'Calhau, J., Sobral, D., Santos, S., Matthee, J. J., Paulino-Afonso, A., Stroe,
    A., … Adams, B. (2020). The X-ray and radio activity of typical and luminous Ly α
    emitters from z ∼ 2 to z ∼ 6: Evidence for a diverse, evolving population. <i>Monthly
    Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa476">https://doi.org/10.1093/mnras/staa476</a>'
  chicago: 'Calhau, João, David Sobral, Sérgio Santos, Jorryt J Matthee, Ana Paulino-Afonso,
    Andra Stroe, Brooke Simmons, Cassandra Barlow-Hall, and Benjamin Adams. “The X-Ray
    and Radio Activity of Typical and Luminous Ly α Emitters from z ∼ 2 to z ∼ 6:
    Evidence for a Diverse, Evolving Population.” <i>Monthly Notices of the Royal
    Astronomical Society</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1093/mnras/staa476">https://doi.org/10.1093/mnras/staa476</a>.'
  ieee: 'J. Calhau <i>et al.</i>, “The X-ray and radio activity of typical and luminous
    Ly α emitters from z ∼ 2 to z ∼ 6: Evidence for a diverse, evolving population,”
    <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 493, no. 3. Oxford
    University Press, pp. 3341–3362, 2020.'
  ista: 'Calhau J, Sobral D, Santos S, Matthee JJ, Paulino-Afonso A, Stroe A, Simmons
    B, Barlow-Hall C, Adams B. 2020. The X-ray and radio activity of typical and luminous
    Ly α emitters from z ∼ 2 to z ∼ 6: Evidence for a diverse, evolving population.
    Monthly Notices of the Royal Astronomical Society. 493(3), 3341–3362.'
  mla: 'Calhau, João, et al. “The X-Ray and Radio Activity of Typical and Luminous
    Ly α Emitters from z ∼ 2 to z ∼ 6: Evidence for a Diverse, Evolving Population.”
    <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 493, no. 3, Oxford
    University Press, 2020, pp. 3341–62, doi:<a href="https://doi.org/10.1093/mnras/staa476">10.1093/mnras/staa476</a>.'
  short: J. Calhau, D. Sobral, S. Santos, J.J. Matthee, A. Paulino-Afonso, A. Stroe,
    B. Simmons, C. Barlow-Hall, B. Adams, Monthly Notices of the Royal Astronomical
    Society 493 (2020) 3341–3362.
date_created: 2022-07-08T07:34:10Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2022-08-18T11:25:31Z
day: '01'
doi: 10.1093/mnras/staa476
extern: '1'
external_id:
  arxiv:
  - '1909.11672'
intvolume: '       493'
issue: '3'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: active'
- 'galaxies: evolution'
- 'galaxies: high-redshift'
- 'quasars: supermassive black holes'
- 'galaxies: star formation'
- 'cosmology: observations'
- 'X-rays: galaxies'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1909.11672
month: '04'
oa: 1
oa_version: Preprint
page: 3341-3362
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The X-ray and radio activity of typical and luminous Ly α emitters from z
  ∼ 2 to z ∼ 6: Evidence for a diverse, evolving population'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 493
year: '2020'
...
---
_id: '11622'
abstract:
- lang: eng
  text: 'The recent discovery of low-amplitude dipolar oscillation mixed modes in
    massive red giants indicates the presence of a missing physical process inside
    their cores. Stars more massive than ∼ 1.3 M⊙ are known to develop a convective
    core during the main-sequence: the dynamo process triggered by this convection
    could be the origin of a strong magnetic field inside the core of the star, trapped
    when it becomes stably stratified and for the rest of its evolution. The presence
    of highly magnetized white dwarfs strengthens the hypothesis of buried fossil
    magnetic fields inside the core of evolved low-mass stars. If such a fossil field
    exists, it should affect the mixed modes of red giants as they are sensitive to
    processes affecting the deepest layers of these stars. The impact of a magnetic
    field on dipolar oscillations modes was one of Pr. Michael J. Thompson’s research
    topics during the 90s when preparing the helioseismic SoHO space mission. As the
    detection of gravity modes in the Sun is still controversial, the investigation
    of the solar oscillation modes did not provide any hint of the existence of a
    magnetic field in the solar radiative core. Today we have access to the core of
    evolved stars thanks to the asteroseismic observation of mixed modes from CoRoT,
    Kepler, K2 and TESS missions. The idea of applying and generalizing the work done
    for the Sun came from discussions with Pr. Michael Thompson in early 2018 before
    we lost him. Following the path we drew together, we theoretically investigate
    the effect of a stable axisymmetric mixed poloidal and toroidal magnetic field,
    aligned with the rotation axis of the star, on the mixed modes frequencies of
    a typical evolved low-mass star. This enables us to estimate the magnetic perturbations
    to the eigenfrequencies of mixed dipolar modes, depending on the magnetic field
    strength and the evolutionary state of the star. We conclude that strong magnetic
    fields of ∼ 1MG should perturb the mixed-mode frequency pattern enough for its
    effects to be detectable inside current asteroseismic data.'
acknowledgement: The authors of this work acknowledge the support received from the
  PLATO CNES grant, the National Aeronautics and Space Administration under Grant
  NNX15AF13G, by the National Science Foundation grant AST-1411685, the Ramon y Cajal
  fellowship number RYC-2015-17697, the ERC SPIRE grant (647383), and the Fundation
  L’Oréal-Unesco-Académie des sciences.
alternative_title:
- Astrophysics and Space Science Proceedings
article_processing_charge: No
arxiv: 1
author:
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
- first_name: V.
  full_name: Prat, V.
  last_name: Prat
- first_name: S.
  full_name: Mathis, S.
  last_name: Mathis
- first_name: R. A.
  full_name: García, R. A.
  last_name: García
- first_name: S.
  full_name: Mathur, S.
  last_name: Mathur
- first_name: K.
  full_name: Augustson, K.
  last_name: Augustson
- first_name: C.
  full_name: Neiner, C.
  last_name: Neiner
- first_name: M. J.
  full_name: Thompson, M. J.
  last_name: Thompson
citation:
  ama: 'Bugnet LA, Prat V, Mathis S, et al. The impact of a fossil magnetic field
    on dipolar mixed-mode frequencies in sub- and red-giant stars. In: Monteiro M,
    Garcia RA, Christensen-Dalsgaard J, McIntosh SW, eds. <i>Dynamics of the Sun and
    Stars</i>. Vol 57. 1st ed. ASSSP. Cham: Springer Nature; 2020:251-257. doi:<a
    href="https://doi.org/10.1007/978-3-030-55336-4_33">10.1007/978-3-030-55336-4_33</a>'
  apa: 'Bugnet, L. A., Prat, V., Mathis, S., García, R. A., Mathur, S., Augustson,
    K., … Thompson, M. J. (2020). The impact of a fossil magnetic field on dipolar
    mixed-mode frequencies in sub- and red-giant stars. In M. Monteiro, R. A. Garcia,
    J. Christensen-Dalsgaard, &#38; S. W. McIntosh (Eds.), <i>Dynamics of the Sun
    and Stars</i> (1st ed., Vol. 57, pp. 251–257). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-55336-4_33">https://doi.org/10.1007/978-3-030-55336-4_33</a>'
  chicago: 'Bugnet, Lisa Annabelle, V. Prat, S. Mathis, R. A. García, S. Mathur, K.
    Augustson, C. Neiner, and M. J. Thompson. “The Impact of a Fossil Magnetic Field
    on Dipolar Mixed-Mode Frequencies in Sub- and Red-Giant Stars.” In <i>Dynamics
    of the Sun and Stars</i>, edited by Mario Monteiro, Rafael A Garcia, Jorgen Christensen-Dalsgaard,
    and Scott W McIntosh, 1st ed., 57:251–57. ASSSP. Cham: Springer Nature, 2020.
    <a href="https://doi.org/10.1007/978-3-030-55336-4_33">https://doi.org/10.1007/978-3-030-55336-4_33</a>.'
  ieee: 'L. A. Bugnet <i>et al.</i>, “The impact of a fossil magnetic field on dipolar
    mixed-mode frequencies in sub- and red-giant stars,” in <i>Dynamics of the Sun
    and Stars</i>, 1st ed., vol. 57, M. Monteiro, R. A. Garcia, J. Christensen-Dalsgaard,
    and S. W. McIntosh, Eds. Cham: Springer Nature, 2020, pp. 251–257.'
  ista: 'Bugnet LA, Prat V, Mathis S, García RA, Mathur S, Augustson K, Neiner C,
    Thompson MJ. 2020.The impact of a fossil magnetic field on dipolar mixed-mode
    frequencies in sub- and red-giant stars. In: Dynamics of the Sun and Stars. Astrophysics
    and Space Science Proceedings, vol. 57, 251–257.'
  mla: Bugnet, Lisa Annabelle, et al. “The Impact of a Fossil Magnetic Field on Dipolar
    Mixed-Mode Frequencies in Sub- and Red-Giant Stars.” <i>Dynamics of the Sun and
    Stars</i>, edited by Mario Monteiro et al., 1st ed., vol. 57, Springer Nature,
    2020, pp. 251–57, doi:<a href="https://doi.org/10.1007/978-3-030-55336-4_33">10.1007/978-3-030-55336-4_33</a>.
  short: L.A. Bugnet, V. Prat, S. Mathis, R.A. García, S. Mathur, K. Augustson, C.
    Neiner, M.J. Thompson, in:, M. Monteiro, R.A. Garcia, J. Christensen-Dalsgaard,
    S.W. McIntosh (Eds.), Dynamics of the Sun and Stars, 1st ed., Springer Nature,
    Cham, 2020, pp. 251–257.
date_created: 2022-07-19T08:25:41Z
date_published: 2020-12-19T00:00:00Z
date_updated: 2024-10-14T11:42:19Z
day: '19'
doi: 10.1007/978-3-030-55336-4_33
edition: '1'
editor:
- first_name: Mario
  full_name: Monteiro, Mario
  last_name: Monteiro
- first_name: Rafael A
  full_name: Garcia, Rafael A
  last_name: Garcia
- first_name: Jorgen
  full_name: Christensen-Dalsgaard, Jorgen
  last_name: Christensen-Dalsgaard
- first_name: Scott W
  full_name: McIntosh, Scott W
  last_name: McIntosh
extern: '1'
external_id:
  arxiv:
  - '2012.08684'
intvolume: '        57'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2012.08684
month: '12'
oa: 1
oa_version: Preprint
page: 251-257
place: Cham
publication: Dynamics of the Sun and Stars
publication_identifier:
  eisbn:
  - 978-3-030-55336-4
  eissn:
  - 1570-6605
  isbn:
  - 978-3-030-55335-7
  issn:
  - 1570-6591
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: ASSSP
status: public
title: The impact of a fossil magnetic field on dipolar mixed-mode frequencies in
  sub- and red-giant stars
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 57
year: '2020'
...
---
_id: '11852'
abstract:
- lang: eng
  text: We present a general framework of designing efficient dynamic approximate
    algorithms for optimization problems on undirected graphs. In particular, we develop
    a technique that, given any problem that admits a certain notion of vertex sparsifiers,
    gives data structures that maintain approximate solutions in sub-linear update
    and query time. We illustrate the applicability of our paradigm to the following
    problems. (1)A fully-dynamic algorithm that approximates all-pair maximum-flows/minimum-cuts
    up to a nearly logarithmic factor in O~(n2/3) 11The O~(⋅) notation is used in
    this paper to hide poly-logarithmic factors. amortized time against an oblivious
    adversary, and O~(m3/4) time against an adaptive adversary. (2)An incremental
    data structure that maintains O(1) - approximate shortest path in no(1) time per
    operation, as well as fully dynamic approximate all-pair shortest path and transshipment
    in O~(n2/3+o(1)) amortized time per operation. (3)A fully-dynamic algorithm that
    approximates all-pair effective resistance up to an (1+ϵ) factor in O~(n2/3+o(1)ϵ−O(1))
    amortized update time per operation. The key tool behind result (1) is the dynamic
    maintenance of an algorithmic construction due to Madry [FOCS' 10], which partitions
    a graph into a collection of simpler graph structures (known as j-trees) and approximately
    captures the cut-flow and metric structure of the graph. The O(1)-approximation
    guarantee of (2) is by adapting the distance oracles by [Thorup-Zwick JACM '05].
    Result (3) is obtained by invoking the random-walk based spectral vertex sparsifier
    by [Durfee et al. STOC '19] in a hierarchical manner, while carefully keeping
    track of the recourse among levels in the hierarchy. See https://arxiv.org/pdf/2005.02368.pdf
    for the full version of this paper.
article_processing_charge: No
arxiv: 1
author:
- first_name: Li
  full_name: Chen, Li
  last_name: Chen
- first_name: Gramoz
  full_name: Goranci, Gramoz
  last_name: Goranci
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Richard
  full_name: Peng, Richard
  last_name: Peng
- first_name: Thatchaphol
  full_name: Saranurak, Thatchaphol
  last_name: Saranurak
citation:
  ama: 'Chen L, Goranci G, Henzinger M, Peng R, Saranurak T. Fast dynamic cuts, distances
    and effective resistances via vertex sparsifiers. In: <i>61st Annual Symposium
    on Foundations of Computer Science</i>. Institute of Electrical and Electronics
    Engineers; 2020:1135-1146. doi:<a href="https://doi.org/10.1109/focs46700.2020.00109">10.1109/focs46700.2020.00109</a>'
  apa: 'Chen, L., Goranci, G., Henzinger, M., Peng, R., &#38; Saranurak, T. (2020).
    Fast dynamic cuts, distances and effective resistances via vertex sparsifiers.
    In <i>61st Annual Symposium on Foundations of Computer Science</i> (pp. 1135–1146).
    Durham, NC, United States: Institute of Electrical and Electronics Engineers.
    <a href="https://doi.org/10.1109/focs46700.2020.00109">https://doi.org/10.1109/focs46700.2020.00109</a>'
  chicago: Chen, Li, Gramoz Goranci, Monika Henzinger, Richard Peng, and Thatchaphol
    Saranurak. “Fast Dynamic Cuts, Distances and Effective Resistances via Vertex
    Sparsifiers.” In <i>61st Annual Symposium on Foundations of Computer Science</i>,
    1135–46. Institute of Electrical and Electronics Engineers, 2020. <a href="https://doi.org/10.1109/focs46700.2020.00109">https://doi.org/10.1109/focs46700.2020.00109</a>.
  ieee: L. Chen, G. Goranci, M. Henzinger, R. Peng, and T. Saranurak, “Fast dynamic
    cuts, distances and effective resistances via vertex sparsifiers,” in <i>61st
    Annual Symposium on Foundations of Computer Science</i>, Durham, NC, United States,
    2020, pp. 1135–1146.
  ista: 'Chen L, Goranci G, Henzinger M, Peng R, Saranurak T. 2020. Fast dynamic cuts,
    distances and effective resistances via vertex sparsifiers. 61st Annual Symposium
    on Foundations of Computer Science. FOCS: Annual Symposium on Foundations of Computer
    Science, 1135–1146.'
  mla: Chen, Li, et al. “Fast Dynamic Cuts, Distances and Effective Resistances via
    Vertex Sparsifiers.” <i>61st Annual Symposium on Foundations of Computer Science</i>,
    Institute of Electrical and Electronics Engineers, 2020, pp. 1135–46, doi:<a href="https://doi.org/10.1109/focs46700.2020.00109">10.1109/focs46700.2020.00109</a>.
  short: L. Chen, G. Goranci, M. Henzinger, R. Peng, T. Saranurak, in:, 61st Annual
    Symposium on Foundations of Computer Science, Institute of Electrical and Electronics
    Engineers, 2020, pp. 1135–1146.
conference:
  end_date: 2020-11-19
  location: Durham, NC, United States
  name: 'FOCS: Annual Symposium on Foundations of Computer Science'
  start_date: 2020-11-16
date_created: 2022-08-16T07:33:12Z
date_published: 2020-11-01T00:00:00Z
date_updated: 2024-11-06T12:17:53Z
day: '01'
doi: 10.1109/focs46700.2020.00109
extern: '1'
external_id:
  arxiv:
  - '2005.02368'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2005.02368
month: '11'
oa: 1
oa_version: Preprint
page: 1135-1146
publication: 61st Annual Symposium on Foundations of Computer Science
publication_identifier:
  eisbn:
  - 978-1-7281-9621-3
  eissn:
  - 2575-8454
  isbn:
  - 978-1-7281-9622-0
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fast dynamic cuts, distances and effective resistances via vertex sparsifiers
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '11978'
abstract:
- lang: eng
  text: Dual photocatalysis and nickel catalysis can effect cross-coupling under mild
    conditions, but little is known about the in situ kinetics of this class of reactions.
    We report a comprehensive kinetic examination of a model carboxylate O-arylation,
    comparing a state-of-the-art homogeneous photocatalyst (Ir(ppy)3) with a competitive
    heterogeneous photocatalyst (graphitic carbon nitride). Experimental conditions
    were adjusted such that the nickel catalytic cycle is saturated with excited photocatalyst.
    This approach was designed to remove the role of the photocatalyst, by which only
    the intrinsic behaviors of the nickel catalytic cycles are observed. The two reactions
    did not display identical kinetics. Ir(ppy)3 deactivates the nickel catalytic
    cycle and creates more dehalogenated side product. Kinetic data for the reaction
    using Ir(ppy)3 supports a turnover-limiting reductive elimination. Graphitic carbon
    nitride gave higher selectivity, even at high photocatalyst-to-nickel ratios.
    The heterogeneous reaction also showed a rate dependence on aryl halide, indicating
    that oxidative addition plays a role in rate determination. The results argue
    against the current mechanistic hypothesis, which states that the photocatalyst
    is only involved to trigger reductive elimination.
article_processing_charge: No
article_type: original
author:
- first_name: Jamal A.
  full_name: Malik, Jamal A.
  last_name: Malik
- first_name: Amiera
  full_name: Madani, Amiera
  last_name: Madani
- first_name: Bartholomäus
  full_name: Pieber, Bartholomäus
  id: 93e5e5b2-0da6-11ed-8a41-af589a024726
  last_name: Pieber
  orcid: 0000-0001-8689-388X
- first_name: Peter H.
  full_name: Seeberger, Peter H.
  last_name: Seeberger
citation:
  ama: Malik JA, Madani A, Pieber B, Seeberger PH. Evidence for photocatalyst involvement
    in oxidative additions of nickel-catalyzed carboxylate O-arylations. <i>Journal
    of the American Chemical Society</i>. 2020;142(25):11042-11049. doi:<a href="https://doi.org/10.1021/jacs.0c02848">10.1021/jacs.0c02848</a>
  apa: Malik, J. A., Madani, A., Pieber, B., &#38; Seeberger, P. H. (2020). Evidence
    for photocatalyst involvement in oxidative additions of nickel-catalyzed carboxylate
    O-arylations. <i>Journal of the American Chemical Society</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/jacs.0c02848">https://doi.org/10.1021/jacs.0c02848</a>
  chicago: Malik, Jamal A., Amiera Madani, Bartholomäus Pieber, and Peter H. Seeberger.
    “Evidence for Photocatalyst Involvement in Oxidative Additions of Nickel-Catalyzed
    Carboxylate O-Arylations.” <i>Journal of the American Chemical Society</i>. American
    Chemical Society, 2020. <a href="https://doi.org/10.1021/jacs.0c02848">https://doi.org/10.1021/jacs.0c02848</a>.
  ieee: J. A. Malik, A. Madani, B. Pieber, and P. H. Seeberger, “Evidence for photocatalyst
    involvement in oxidative additions of nickel-catalyzed carboxylate O-arylations,”
    <i>Journal of the American Chemical Society</i>, vol. 142, no. 25. American Chemical
    Society, pp. 11042–11049, 2020.
  ista: Malik JA, Madani A, Pieber B, Seeberger PH. 2020. Evidence for photocatalyst
    involvement in oxidative additions of nickel-catalyzed carboxylate O-arylations.
    Journal of the American Chemical Society. 142(25), 11042–11049.
  mla: Malik, Jamal A., et al. “Evidence for Photocatalyst Involvement in Oxidative
    Additions of Nickel-Catalyzed Carboxylate O-Arylations.” <i>Journal of the American
    Chemical Society</i>, vol. 142, no. 25, American Chemical Society, 2020, pp. 11042–49,
    doi:<a href="https://doi.org/10.1021/jacs.0c02848">10.1021/jacs.0c02848</a>.
  short: J.A. Malik, A. Madani, B. Pieber, P.H. Seeberger, Journal of the American
    Chemical Society 142 (2020) 11042–11049.
date_created: 2022-08-25T10:57:38Z
date_published: 2020-06-24T00:00:00Z
date_updated: 2024-10-14T12:06:34Z
day: '24'
doi: 10.1021/jacs.0c02848
extern: '1'
external_id:
  pmid:
  - '32469219'
intvolume: '       142'
issue: '25'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1021/jacs.0c02848
month: '06'
oa: 1
oa_version: Published Version
page: 11042-11049
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evidence for photocatalyst involvement in oxidative additions of nickel-catalyzed
  carboxylate O-arylations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 142
year: '2020'
...
---
_id: '12940'
abstract:
- lang: eng
  text: Desorption electrospray ionization (DESI), easy ambient sonic-spray ionization
    (EASI) and low-temperature plasma (LTP) ionization are powerful ambient ionization
    techniques for mass spectrometry. However, every single method has its limitation
    in terms of polarity and molecular weight of analyte molecules. After the miniaturization
    of every possible component of the different ion sources, we finally were able
    to embed two emitters and an ion transfer tubing into a small, hand-held device.
    The pen-like interface is connected to the mass spectrometer and a separate control
    unit via a bundle of flexible tubing and cables. The novel device allows the user
    to ionize an extended range of chemicals by simple switching between DESI, voltage-free
    EASI, or LTP ionization as well as to freely move the interface over a surface
    of interest. A mini camera, which is mounted on the tip of the pen, magnifies
    the desorption area and enables a simple positioning of the pen. The interface
    was successfully tested using different types of chemicals, pharmaceuticals, and
    real life samples. Moreover, the combination of optical data from the camera module
    and chemical data obtained by mass analysis facilitates a novel type of imaging
    mass spectrometry, which we name “interactive mass spectrometry imaging (IMSI)”.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Christina
  full_name: Meisenbichler, Christina
  last_name: Meisenbichler
- first_name: Florian
  full_name: Kluibenschedl, Florian
  id: 7499e70e-eb2c-11ec-b98b-f925648bc9d9
  last_name: Kluibenschedl
- first_name: Thomas
  full_name: Müller, Thomas
  last_name: Müller
citation:
  ama: Meisenbichler C, Kluibenschedl F, Müller T. A 3-in-1 hand-held ambient mass
    spectrometry interface for identification and 2D localization of chemicals on
    surfaces. <i>Analytical Chemistry</i>. 2020;92(21):14314-14318. doi:<a href="https://doi.org/10.1021/acs.analchem.0c02615">10.1021/acs.analchem.0c02615</a>
  apa: Meisenbichler, C., Kluibenschedl, F., &#38; Müller, T. (2020). A 3-in-1 hand-held
    ambient mass spectrometry interface for identification and 2D localization of
    chemicals on surfaces. <i>Analytical Chemistry</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.analchem.0c02615">https://doi.org/10.1021/acs.analchem.0c02615</a>
  chicago: Meisenbichler, Christina, Florian Kluibenschedl, and Thomas Müller. “A
    3-in-1 Hand-Held Ambient Mass Spectrometry Interface for Identification and 2D
    Localization of Chemicals on Surfaces.” <i>Analytical Chemistry</i>. American
    Chemical Society, 2020. <a href="https://doi.org/10.1021/acs.analchem.0c02615">https://doi.org/10.1021/acs.analchem.0c02615</a>.
  ieee: C. Meisenbichler, F. Kluibenschedl, and T. Müller, “A 3-in-1 hand-held ambient
    mass spectrometry interface for identification and 2D localization of chemicals
    on surfaces,” <i>Analytical Chemistry</i>, vol. 92, no. 21. American Chemical
    Society, pp. 14314–14318, 2020.
  ista: Meisenbichler C, Kluibenschedl F, Müller T. 2020. A 3-in-1 hand-held ambient
    mass spectrometry interface for identification and 2D localization of chemicals
    on surfaces. Analytical Chemistry. 92(21), 14314–14318.
  mla: Meisenbichler, Christina, et al. “A 3-in-1 Hand-Held Ambient Mass Spectrometry
    Interface for Identification and 2D Localization of Chemicals on Surfaces.” <i>Analytical
    Chemistry</i>, vol. 92, no. 21, American Chemical Society, 2020, pp. 14314–18,
    doi:<a href="https://doi.org/10.1021/acs.analchem.0c02615">10.1021/acs.analchem.0c02615</a>.
  short: C. Meisenbichler, F. Kluibenschedl, T. Müller, Analytical Chemistry 92 (2020)
    14314–14318.
date_created: 2023-05-10T14:50:19Z
date_published: 2020-10-16T00:00:00Z
date_updated: 2023-05-15T08:01:20Z
day: '16'
doi: 10.1021/acs.analchem.0c02615
extern: '1'
external_id:
  pmid:
  - '33063994'
intvolume: '        92'
issue: '21'
keyword:
- Analytical Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1021/acs.analchem.0c02615
month: '10'
oa: 1
oa_version: Published Version
page: 14314-14318
pmid: 1
publication: Analytical Chemistry
publication_identifier:
  issn:
  - 0003-2700
  - 1520-6882
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: A 3-in-1 hand-held ambient mass spectrometry interface for identification and
  2D localization of chemicals on surfaces
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 92
year: '2020'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21085'
abstract:
- lang: eng
  text: Foldamers combining aliphatic and aromatic main-chain units often produce
    atypical structures that cannot easily be accessed from purely aromatic or aliphatic
    sequences. We report solid-state evidence that sequences comprising α-amino acids
    and quinoline-based monomers adopt conformations that combine the folding propensities
    of both components. Foldamers 2 and 3 having an XQQ repeat motif (X=α-amino acid,
    Q=quinoline) were synthesized. Crystals of 2 (X=Phe, Q with an anionic side chain)
    obtained from water revealed an aromatic helix where amide groups belonging to
    the α-amino acids created a hydrogen-bond array typical of peptidic helices. Crystals
    of 3 (X=Ser, Q with a lipophilic side chain) obtained from organic solvents revealed
    a helix-turn-helix structure in which α-amino acid side chains interfere with
    main-chain hydrogen bonding. High sequence-dependency of the conformation is typical
    of peptides but is shown here to include aromatic folding features.
article_processing_charge: No
article_type: original
author:
- first_name: Xiaobo
  full_name: Hu, Xiaobo
  last_name: Hu
- first_name: Pradeep K
  full_name: Mandal, Pradeep K
  id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
  last_name: Mandal
  orcid: 0000-0001-5996-956X
- first_name: Brice
  full_name: Kauffmann, Brice
  last_name: Kauffmann
- first_name: Ivan
  full_name: Huc, Ivan
  last_name: Huc
citation:
  ama: Hu X, Mandal PK, Kauffmann B, Huc I. Hybrid sequences that express both aromatic
    amide and α‐peptidic folding features. <i>ChemPlusChem</i>. 2020;85(7):1580-1586.
    doi:<a href="https://doi.org/10.1002/cplu.202000416">10.1002/cplu.202000416</a>
  apa: Hu, X., Mandal, P. K., Kauffmann, B., &#38; Huc, I. (2020). Hybrid sequences
    that express both aromatic amide and α‐peptidic folding features. <i>ChemPlusChem</i>.
    Wiley. <a href="https://doi.org/10.1002/cplu.202000416">https://doi.org/10.1002/cplu.202000416</a>
  chicago: Hu, Xiaobo, Pradeep K Mandal, Brice Kauffmann, and Ivan Huc. “Hybrid Sequences
    That Express Both Aromatic Amide and Α‐peptidic Folding Features.” <i>ChemPlusChem</i>.
    Wiley, 2020. <a href="https://doi.org/10.1002/cplu.202000416">https://doi.org/10.1002/cplu.202000416</a>.
  ieee: X. Hu, P. K. Mandal, B. Kauffmann, and I. Huc, “Hybrid sequences that express
    both aromatic amide and α‐peptidic folding features,” <i>ChemPlusChem</i>, vol.
    85, no. 7. Wiley, pp. 1580–1586, 2020.
  ista: Hu X, Mandal PK, Kauffmann B, Huc I. 2020. Hybrid sequences that express both
    aromatic amide and α‐peptidic folding features. ChemPlusChem. 85(7), 1580–1586.
  mla: Hu, Xiaobo, et al. “Hybrid Sequences That Express Both Aromatic Amide and Α‐peptidic
    Folding Features.” <i>ChemPlusChem</i>, vol. 85, no. 7, Wiley, 2020, pp. 1580–86,
    doi:<a href="https://doi.org/10.1002/cplu.202000416">10.1002/cplu.202000416</a>.
  short: X. Hu, P.K. Mandal, B. Kauffmann, I. Huc, ChemPlusChem 85 (2020) 1580–1586.
date_created: 2026-01-29T15:34:50Z
date_published: 2020-07-06T00:00:00Z
date_updated: 2026-02-20T06:51:31Z
day: '06'
doi: 10.1002/cplu.202000416
extern: '1'
external_id:
  pmid:
  - '32729681'
has_accepted_license: '1'
intvolume: '        85'
issue: '7'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/cplu.202000416
month: '07'
oa: 1
oa_version: Published Version
page: 1580-1586
pmid: 1
publication: ChemPlusChem
publication_identifier:
  eissn:
  - 2192-6506
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hybrid sequences that express both aromatic amide and α‐peptidic folding features
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 85
year: '2020'
...
---
OA_type: closed access
_id: '21621'
abstract:
- lang: eng
  text: We show that nanophotonic structures enable the possibility of realizing lasers
    based on stimulated emission by free electrons. The associated threshold beam
    currents are in the nanoampere range, and could be realized in electron microscopes.
article_number: FM2Q.3
article_processing_charge: No
author:
- first_name: Nicholas
  full_name: Rivera, Nicholas
  last_name: Rivera
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Ido
  full_name: Kaminer, Ido
  last_name: Kaminer
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
citation:
  ama: 'Rivera N, Roques-Carmes C, Kaminer I, Soljačić M. Toward nanophotonic free-electron
    lasers. In: <i>Conference on Lasers and Electro-Optics</i>. Optica Publishing
    Group; 2020. doi:<a href="https://doi.org/10.1364/cleo_qels.2020.fm2q.3">10.1364/cleo_qels.2020.fm2q.3</a>'
  apa: 'Rivera, N., Roques-Carmes, C., Kaminer, I., &#38; Soljačić, M. (2020). Toward
    nanophotonic free-electron lasers. In <i>Conference on Lasers and Electro-Optics</i>.
    Washington, DC, United States: Optica Publishing Group. <a href="https://doi.org/10.1364/cleo_qels.2020.fm2q.3">https://doi.org/10.1364/cleo_qels.2020.fm2q.3</a>'
  chicago: Rivera, Nicholas, Charles Roques-Carmes, Ido Kaminer, and Marin Soljačić.
    “Toward Nanophotonic Free-Electron Lasers.” In <i>Conference on Lasers and Electro-Optics</i>.
    Optica Publishing Group, 2020. <a href="https://doi.org/10.1364/cleo_qels.2020.fm2q.3">https://doi.org/10.1364/cleo_qels.2020.fm2q.3</a>.
  ieee: N. Rivera, C. Roques-Carmes, I. Kaminer, and M. Soljačić, “Toward nanophotonic
    free-electron lasers,” in <i>Conference on Lasers and Electro-Optics</i>, Washington,
    DC, United States, 2020.
  ista: 'Rivera N, Roques-Carmes C, Kaminer I, Soljačić M. 2020. Toward nanophotonic
    free-electron lasers. Conference on Lasers and Electro-Optics. CLEO: Fundamental
    Science, FM2Q.3.'
  mla: Rivera, Nicholas, et al. “Toward Nanophotonic Free-Electron Lasers.” <i>Conference
    on Lasers and Electro-Optics</i>, FM2Q.3, Optica Publishing Group, 2020, doi:<a
    href="https://doi.org/10.1364/cleo_qels.2020.fm2q.3">10.1364/cleo_qels.2020.fm2q.3</a>.
  short: N. Rivera, C. Roques-Carmes, I. Kaminer, M. Soljačić, in:, Conference on
    Lasers and Electro-Optics, Optica Publishing Group, 2020.
conference:
  end_date: 2020-05-15
  location: Washington, DC, United States
  name: 'CLEO: Fundamental Science'
  start_date: 2020-05-10
date_created: 2026-03-30T12:22:48Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2026-05-05T06:49:40Z
day: '01'
doi: 10.1364/cleo_qels.2020.fm2q.3
extern: '1'
language:
- iso: eng
month: '06'
oa_version: None
publication: Conference on Lasers and Electro-Optics
publication_identifier:
  eisbn:
  - '9781943580767'
  issnl:
  - 2162-2701
publication_status: published
publisher: Optica Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: Toward nanophotonic free-electron lasers
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '13463'
abstract:
- lang: eng
  text: 'Present and upcoming time-domain astronomy efforts, in part driven by gravitational-wave
    follow-up campaigns, will unveil a variety of rare explosive transients in the
    sky. Here, we focus on pulsational pair-instability evolution, which can result
    in signatures that are observable with electromagnetic and gravitational waves.
    We simulated grids of bare helium stars to characterize the resulting black hole
    (BH) masses together with the ejecta composition, velocity, and thermal state.
    We find that the stars do not react “elastically” to the thermonuclear ignition
    in the core: there is not a one-to-one correspondence between pair-instability
    driven ignition and mass ejections, which causes ambiguity as to what is an observable
    pulse. In agreement with previous studies, we find that for initial helium core
    masses of 37.5 M⊙ ≲ MHe, init ≲ 41 M⊙, corresponding to carbon-oxygen core masses
    27.5 M⊙ ≲ MCO ≲ 30.1 M⊙, the explosions are not strong enough to affect the surface.
    With increasing initial helium core mass, they become progressively stronger causing
    first large radial expansion (41 M⊙ ≲ MHe, init ≲ 42 M⊙, corresponding to 30.1 M⊙ ≲ MCO ≲ 30.8 M⊙)
    and, finally, also mass ejection episodes (for MHe, init ≳ 42 M⊙, or MCO ≳ 30.8 M⊙).
    The lowest mass helium core to be fully disrupted in a pair-instability supernova
    is MHe, init ≃ 80 M⊙, corresponding to MCO ≃ 55 M⊙. Models with MHe, init ≳ 200 M⊙
    (MCO ≳ 114 M⊙) reach the photodisintegration regime, resulting in BHs with masses
    of MBH ≳ 125 M⊙. Although this is currently considered unlikely, if BHs from these
    models form via (weak) explosions, the previously-ejected material might be hit
    by the blast wave and convert kinetic energy into observable electromagnetic radiation.
    We characterize the hydrogen-free circumstellar material from the pulsational
    pair-instability of helium cores by simply assuming that the ejecta maintain a
    constant velocity after ejection. We find that our models produce helium-rich
    ejecta with mass of 10−3 M⊙ ≲ MCSM ≲ 40 M⊙, the larger values corresponding to
    the more massive progenitor stars. These ejecta are typically launched at a few
    thousand km s−1 and reach distances of ∼1012 − 1015 cm before the core-collapse
    of the star. The delays between mass ejection events and the final collapse span
    a wide and mass-dependent range (from subhour to 104 years), and the shells ejected
    can also collide with each other, powering supernova impostor events before the
    final core-collapse. The range of properties we find suggests a possible connection
    with (some) type Ibn supernovae.'
article_number: A56
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: M.
  full_name: Renzo, M.
  last_name: Renzo
- first_name: R.
  full_name: Farmer, R.
  last_name: Farmer
- first_name: S.
  full_name: Justham, S.
  last_name: Justham
- first_name: Ylva Louise Linsdotter
  full_name: Götberg, Ylva Louise Linsdotter
  id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
  last_name: Götberg
  orcid: 0000-0002-6960-6911
- first_name: S. E.
  full_name: de Mink, S. E.
  last_name: de Mink
- first_name: E.
  full_name: Zapartas, E.
  last_name: Zapartas
- first_name: P.
  full_name: Marchant, P.
  last_name: Marchant
- first_name: N.
  full_name: Smith, N.
  last_name: Smith
citation:
  ama: Renzo M, Farmer R, Justham S, et al. Predictions for the hydrogen-free ejecta
    of pulsational pair-instability supernovae. <i>Astronomy &#38; Astrophysics</i>.
    2020;640. doi:<a href="https://doi.org/10.1051/0004-6361/202037710">10.1051/0004-6361/202037710</a>
  apa: Renzo, M., Farmer, R., Justham, S., Götberg, Y. L. L., de Mink, S. E., Zapartas,
    E., … Smith, N. (2020). Predictions for the hydrogen-free ejecta of pulsational
    pair-instability supernovae. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences.
    <a href="https://doi.org/10.1051/0004-6361/202037710">https://doi.org/10.1051/0004-6361/202037710</a>
  chicago: Renzo, M., R. Farmer, S. Justham, Ylva Louise Linsdotter Götberg, S. E.
    de Mink, E. Zapartas, P. Marchant, and N. Smith. “Predictions for the Hydrogen-Free
    Ejecta of Pulsational Pair-Instability Supernovae.” <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences, 2020. <a href="https://doi.org/10.1051/0004-6361/202037710">https://doi.org/10.1051/0004-6361/202037710</a>.
  ieee: M. Renzo <i>et al.</i>, “Predictions for the hydrogen-free ejecta of pulsational
    pair-instability supernovae,” <i>Astronomy &#38; Astrophysics</i>, vol. 640. EDP
    Sciences, 2020.
  ista: Renzo M, Farmer R, Justham S, Götberg YLL, de Mink SE, Zapartas E, Marchant
    P, Smith N. 2020. Predictions for the hydrogen-free ejecta of pulsational pair-instability
    supernovae. Astronomy &#38; Astrophysics. 640, A56.
  mla: Renzo, M., et al. “Predictions for the Hydrogen-Free Ejecta of Pulsational
    Pair-Instability Supernovae.” <i>Astronomy &#38; Astrophysics</i>, vol. 640, A56,
    EDP Sciences, 2020, doi:<a href="https://doi.org/10.1051/0004-6361/202037710">10.1051/0004-6361/202037710</a>.
  short: M. Renzo, R. Farmer, S. Justham, Y.L.L. Götberg, S.E. de Mink, E. Zapartas,
    P. Marchant, N. Smith, Astronomy &#38; Astrophysics 640 (2020).
date_created: 2023-08-03T10:12:58Z
date_published: 2020-08-12T00:00:00Z
date_updated: 2023-08-09T12:58:41Z
day: '12'
doi: 10.1051/0004-6361/202037710
extern: '1'
external_id:
  arxiv:
  - '2002.05077'
intvolume: '       640'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1051/0004-6361/202037710
month: '08'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Predictions for the hydrogen-free ejecta of pulsational pair-instability supernovae
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 640
year: '2020'
...
