---
OA_type: closed access
_id: '19989'
abstract:
- lang: ger
text: Neurone empfangen Eingangssignale, konvertieren diese in Aktionspotenziale
und generieren schließlich Ausgangssignale auf ihren Zielzellen. Dabei sind die
zu überwindenden räumlichen Distanzen oft groß. Daher ist entscheidend, dass elektrische
Signale in Nervenzellen schnell von einem zum anderen Ort geleitet werden können.
Diese wichtige Aufgabe erfüllt das Axon, der „Ausgangsfortsatz“ der Nervenzelle.
Für die schnelle Leitung des Aktionspotenzials sind sowohl die passiven Eigenschaften
des axonalen Kabels als auch die aktiven Eigenschaften der Zellmembran von entscheidender
Bedeutung. Die Evolution bedient sich zweier Tricks, um die Leitungsgeschwindigkeit
des Aktionspotenzials zu maximieren. Der eine Trick ist die Zunahme des Axondurchmessers.
Der andere Trick ist die Ausbildung von Markscheiden. Dies führt bei nahezu gleichem
Platzbedarf zu einer Zunahme der Leistungsgeschwindigkeit um fast zwei Größenordnungen.
Die Aktionspotenzialleitung an myelinisierten Axonen erfolgt „saltatorisch“.
article_processing_charge: No
author:
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: 'Jonas PM. Aktionspotenzial: Fortleitung im Axon. In: Physiologie des Menschen.
32nd ed. Springer-Lehrbuch. Berlin, Heidelberg: Springer Nature; 2019:72-82. doi:10.1007/978-3-662-56468-4_7'
apa: 'Jonas, P. M. (2019). Aktionspotenzial: Fortleitung im Axon. In Physiologie
des Menschen (32nd ed., pp. 72–82). Berlin, Heidelberg: Springer Nature. https://doi.org/10.1007/978-3-662-56468-4_7'
chicago: 'Jonas, Peter M. “Aktionspotenzial: Fortleitung im Axon.” In Physiologie
des Menschen, 32nd ed., 72–82. Springer-Lehrbuch. Berlin, Heidelberg: Springer
Nature, 2019. https://doi.org/10.1007/978-3-662-56468-4_7.'
ieee: 'P. M. Jonas, “Aktionspotenzial: Fortleitung im Axon,” in Physiologie des
Menschen, 32nd ed., Berlin, Heidelberg: Springer Nature, 2019, pp. 72–82.'
ista: 'Jonas PM. 2019.Aktionspotenzial: Fortleitung im Axon. In: Physiologie des
Menschen. , 72–82.'
mla: 'Jonas, Peter M. “Aktionspotenzial: Fortleitung im Axon.” Physiologie des
Menschen, 32nd ed., Springer Nature, 2019, pp. 72–82, doi:10.1007/978-3-662-56468-4_7.'
short: P.M. Jonas, in:, Physiologie des Menschen, 32nd ed., Springer Nature, Berlin,
Heidelberg, 2019, pp. 72–82.
corr_author: '1'
date_created: 2025-07-10T13:36:36Z
date_published: 2019-04-02T00:00:00Z
date_updated: 2025-09-23T11:44:57Z
day: '02'
department:
- _id: PeJo
doi: 10.1007/978-3-662-56468-4_7
edition: '32'
language:
- iso: ger
month: '04'
oa_version: None
page: 72-82
place: Berlin, Heidelberg
publication: Physiologie des Menschen
publication_identifier:
eisbn:
- '9783662564684'
eissn:
- 2512-5214
isbn:
- '9783662564677'
issn:
- 0937-7433
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
series_title: Springer-Lehrbuch
status: public
title: 'Aktionspotenzial: Fortleitung im Axon'
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '105'
abstract:
- lang: eng
text: 'Clinical Utility Gene Card. 1. Name of Disease (Synonyms): Pontocerebellar
hypoplasia type 9 (PCH9) and spastic paraplegia-63 (SPG63). 2. OMIM# of the Disease:
615809 and 615686. 3. Name of the Analysed Genes or DNA/Chromosome Segments: AMPD2
at 1p13.3. 4. OMIM# of the Gene(s): 102771.'
acknowledgement: 'This work was supported by EuroGentest2 (Unit 2: “Genetic testing
as part of health care”), a Coordination Action under FP7 (Grant Agreement Number
261469) and the European Society of Human Genetics. We acknowledge the participation
of the patients and their families in these studies, as well as the generous financial
support of the Lefroy and Handbury families. APLM was supported by an Australian
Postgraduate Award. PJL is supported by an NHMRC Career Development Fellowship (GNT1032364).
RJL is supported by a Melbourne Children’s Clinician Scientist Fellowship.'
article_processing_charge: No
article_type: original
author:
- first_name: Ashley
full_name: Marsh, Ashley
last_name: Marsh
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Paul
full_name: Lockhart, Paul
last_name: Lockhart
- first_name: Richard
full_name: Leventer, Richard
last_name: Leventer
citation:
ama: Marsh A, Novarino G, Lockhart P, Leventer R. CUGC for pontocerebellar hypoplasia
type 9 and spastic paraplegia-63. European Journal of Human Genetics. 2019;27:161-166.
doi:10.1038/s41431-018-0231-2
apa: Marsh, A., Novarino, G., Lockhart, P., & Leventer, R. (2019). CUGC for
pontocerebellar hypoplasia type 9 and spastic paraplegia-63. European Journal
of Human Genetics. Springer Nature. https://doi.org/10.1038/s41431-018-0231-2
chicago: Marsh, Ashley, Gaia Novarino, Paul Lockhart, and Richard Leventer. “CUGC
for Pontocerebellar Hypoplasia Type 9 and Spastic Paraplegia-63.” European
Journal of Human Genetics. Springer Nature, 2019. https://doi.org/10.1038/s41431-018-0231-2.
ieee: A. Marsh, G. Novarino, P. Lockhart, and R. Leventer, “CUGC for pontocerebellar
hypoplasia type 9 and spastic paraplegia-63,” European Journal of Human Genetics,
vol. 27. Springer Nature, pp. 161–166, 2019.
ista: Marsh A, Novarino G, Lockhart P, Leventer R. 2019. CUGC for pontocerebellar
hypoplasia type 9 and spastic paraplegia-63. European Journal of Human Genetics.
27, 161–166.
mla: Marsh, Ashley, et al. “CUGC for Pontocerebellar Hypoplasia Type 9 and Spastic
Paraplegia-63.” European Journal of Human Genetics, vol. 27, Springer Nature,
2019, pp. 161–66, doi:10.1038/s41431-018-0231-2.
short: A. Marsh, G. Novarino, P. Lockhart, R. Leventer, European Journal of Human
Genetics 27 (2019) 161–166.
date_created: 2018-12-11T11:44:39Z
date_published: 2019-01-01T00:00:00Z
date_updated: 2026-06-18T08:42:55Z
day: '01'
ddc:
- '570'
department:
- _id: GaNo
doi: 10.1038/s41431-018-0231-2
external_id:
isi:
- '000454111500019'
pmid:
- '30089829'
intvolume: ' 27'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1038/s41431-018-0231-2
month: '01'
oa: 1
oa_version: Published Version
page: 161-166
pmid: 1
publication: European Journal of Human Genetics
publication_status: published
publisher: Springer Nature
publist_id: '7949'
quality_controlled: '1'
scopus_import: '1'
status: public
title: CUGC for pontocerebellar hypoplasia type 9 and spastic paraplegia-63
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 27
year: '2019'
...
---
_id: '10621'
abstract:
- lang: eng
text: Twisted bilayer graphene has recently emerged as a platform for hosting correlated
phenomena. For twist angles near θ ≈ 1.1°, the low-energy electronic structure
of twisted bilayer graphene features isolated bands with a flat dispersion1,2.
Recent experiments have observed a variety of low-temperature phases that appear
to be driven by electron interactions, including insulating states, superconductivity
and magnetism3,4,5,6. Here we report electrical transport measurements up to room
temperature for twist angles varying between 0.75° and 2°. We find that the resistivity,
ρ, scales linearly with temperature, T, over a wide range of T before falling
again owing to interband activation. The T-linear response is much larger than
observed in monolayer graphene for all measured devices, and in particular increases
by more than three orders of magnitude in the range where the flat band exists.
Our results point to the dominant role of electron–phonon scattering in twisted
bilayer graphene, with possible implications for the origin of the observed superconductivity.
acknowledgement: The authors thank S. Das Sarma and F. Wu for sharing their unpublished
theoretical results, and acknowledge further discussions with L. Balents and T.
Senthil. Work at both Columbia and UCSB was funded by the Army Research Office under
award W911NF-17-1-0323. Sample device design and fabrication was partially supported
by DoE Pro-QM EFRC (DE-SC0019443). A.F.Y. and C.R.D. separately acknowledge the
support of the David and Lucile Packard Foundation. K.W. and T.T. acknowledge support
from the Elemental Strategy Initiative conducted by the MEXT, Japan and the CREST
(JPMJCR15F3), JST. A portion of this work was carried out at the KITP, Santa Barbara,
supported by the National Science Foundation under grant number NSF PHY-1748958.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Hryhoriy
full_name: Polshyn, Hryhoriy
id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
last_name: Polshyn
orcid: 0000-0001-8223-8896
- first_name: Matthew
full_name: Yankowitz, Matthew
last_name: Yankowitz
- first_name: Shaowen
full_name: Chen, Shaowen
last_name: Chen
- first_name: Yuxuan
full_name: Zhang, Yuxuan
last_name: Zhang
- first_name: K.
full_name: Watanabe, K.
last_name: Watanabe
- first_name: T.
full_name: Taniguchi, T.
last_name: Taniguchi
- first_name: Cory R.
full_name: Dean, Cory R.
last_name: Dean
- first_name: Andrea F.
full_name: Young, Andrea F.
last_name: Young
citation:
ama: Polshyn H, Yankowitz M, Chen S, et al. Large linear-in-temperature resistivity
in twisted bilayer graphene. Nature Physics. 2019;15(10):1011-1016. doi:10.1038/s41567-019-0596-3
apa: Polshyn, H., Yankowitz, M., Chen, S., Zhang, Y., Watanabe, K., Taniguchi, T.,
… Young, A. F. (2019). Large linear-in-temperature resistivity in twisted bilayer
graphene. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-019-0596-3
chicago: Polshyn, Hryhoriy, Matthew Yankowitz, Shaowen Chen, Yuxuan Zhang, K. Watanabe,
T. Taniguchi, Cory R. Dean, and Andrea F. Young. “Large Linear-in-Temperature
Resistivity in Twisted Bilayer Graphene.” Nature Physics. Springer Nature,
2019. https://doi.org/10.1038/s41567-019-0596-3.
ieee: H. Polshyn et al., “Large linear-in-temperature resistivity in twisted
bilayer graphene,” Nature Physics, vol. 15, no. 10. Springer Nature, pp.
1011–1016, 2019.
ista: Polshyn H, Yankowitz M, Chen S, Zhang Y, Watanabe K, Taniguchi T, Dean CR,
Young AF. 2019. Large linear-in-temperature resistivity in twisted bilayer graphene.
Nature Physics. 15(10), 1011–1016.
mla: Polshyn, Hryhoriy, et al. “Large Linear-in-Temperature Resistivity in Twisted
Bilayer Graphene.” Nature Physics, vol. 15, no. 10, Springer Nature, 2019,
pp. 1011–16, doi:10.1038/s41567-019-0596-3.
short: H. Polshyn, M. Yankowitz, S. Chen, Y. Zhang, K. Watanabe, T. Taniguchi, C.R.
Dean, A.F. Young, Nature Physics 15 (2019) 1011–1016.
date_created: 2022-01-13T15:00:58Z
date_published: 2019-08-05T00:00:00Z
date_updated: 2022-01-20T09:33:38Z
day: '05'
doi: 10.1038/s41567-019-0596-3
extern: '1'
external_id:
arxiv:
- '1902.00763'
intvolume: ' 15'
issue: '10'
keyword:
- general physics and astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1902.00763
month: '08'
oa: 1
oa_version: Preprint
page: 1011-1016
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Large linear-in-temperature resistivity in twisted bilayer graphene
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 15
year: '2019'
...
---
_id: '10722'
abstract:
- lang: eng
text: Bilayer graphene, rotationally faulted to ~1.1 degree misalignment, has recently
been shown to host superconducting and resistive states associated with the formation
of a flat electronic band. While numerous theories exist for the origins of both
states, direct validation of these theories remains an outstanding experimental
problem. Here, we focus on the resistive states occurring at commensurate filling
(1/2, 1/4, and 3/4) of the two lowest superlattice bands. We test theoretical
proposals that these states arise due to broken spin—and/or valley—symmetry by
performing direct magnetic imaging with nanoscale SQUID-on-tip microscopy. This
technique provides single-spin resolved magnetometry on sub-100nm length scales.
I will present imaging data from our 4.2K nSOT microscope on graphite-gated twisted
bilayers near the flat band condition and discuss the implications for the physics
of the commensurate resistive states.
alternative_title:
- Bulletin of the American Physical Society
article_number: L14.00006
article_processing_charge: No
author:
- first_name: Marec
full_name: Serlin, Marec
last_name: Serlin
- first_name: Charles
full_name: Tschirhart, Charles
last_name: Tschirhart
- first_name: Hryhoriy
full_name: Polshyn, Hryhoriy
id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
last_name: Polshyn
orcid: 0000-0001-8223-8896
- first_name: Jiacheng
full_name: Zhu, Jiacheng
last_name: Zhu
- first_name: Martin E.
full_name: Huber, Martin E.
last_name: Huber
- first_name: Andrea
full_name: Young, Andrea
last_name: Young
citation:
ama: 'Serlin M, Tschirhart C, Polshyn H, Zhu J, Huber ME, Young A. Direct Imaging
of magnetic structure in twisted bilayer graphene with scanning nanoSQUID-On-Tip
microscopy. In: APS March Meeting 2019. Vol 64. American Physical Society;
2019.'
apa: 'Serlin, M., Tschirhart, C., Polshyn, H., Zhu, J., Huber, M. E., & Young,
A. (2019). Direct Imaging of magnetic structure in twisted bilayer graphene with
scanning nanoSQUID-On-Tip microscopy. In APS March Meeting 2019 (Vol. 64).
Boston, MA, United States: American Physical Society.'
chicago: Serlin, Marec, Charles Tschirhart, Hryhoriy Polshyn, Jiacheng Zhu, Martin
E. Huber, and Andrea Young. “Direct Imaging of Magnetic Structure in Twisted Bilayer
Graphene with Scanning NanoSQUID-On-Tip Microscopy.” In APS March Meeting 2019,
Vol. 64. American Physical Society, 2019.
ieee: M. Serlin, C. Tschirhart, H. Polshyn, J. Zhu, M. E. Huber, and A. Young, “Direct
Imaging of magnetic structure in twisted bilayer graphene with scanning nanoSQUID-On-Tip
microscopy,” in APS March Meeting 2019, Boston, MA, United States, 2019,
vol. 64, no. 2.
ista: 'Serlin M, Tschirhart C, Polshyn H, Zhu J, Huber ME, Young A. 2019. Direct
Imaging of magnetic structure in twisted bilayer graphene with scanning nanoSQUID-On-Tip
microscopy. APS March Meeting 2019. APS: American Physical Society, Bulletin of
the American Physical Society, vol. 64, L14.00006.'
mla: Serlin, Marec, et al. “Direct Imaging of Magnetic Structure in Twisted Bilayer
Graphene with Scanning NanoSQUID-On-Tip Microscopy.” APS March Meeting 2019,
vol. 64, no. 2, L14.00006, American Physical Society, 2019.
short: M. Serlin, C. Tschirhart, H. Polshyn, J. Zhu, M.E. Huber, A. Young, in:,
APS March Meeting 2019, American Physical Society, 2019.
conference:
end_date: 2019-03-08
location: Boston, MA, United States
name: 'APS: American Physical Society'
start_date: 2019-03-04
date_created: 2022-02-04T11:54:21Z
date_published: 2019-03-01T00:00:00Z
date_updated: 2022-02-08T10:25:30Z
day: '01'
extern: '1'
intvolume: ' 64'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://meetings.aps.org/Meeting/MAR19/Session/L14.6
month: '03'
oa: 1
oa_version: Published Version
publication: APS March Meeting 2019
publication_identifier:
issn:
- 0003-0503
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Direct Imaging of magnetic structure in twisted bilayer graphene with scanning
nanoSQUID-On-Tip microscopy
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 64
year: '2019'
...
---
_id: '17512'
abstract:
- lang: eng
text: 'The localization of stellar-mass binary black hole mergers using gravitational
waves is critical in understanding the properties of the binaries’ host galaxies,
observing possible electromagnetic emission from the mergers, or using them as
a cosmological distance ladder. The precision of this localization can be substantially
increased with prior astrophysical information about the binary system. In particular,
constraining the inclination of the binary can reduce the distance uncertainty
of the source. Here, we present the first realistic set of localizations for binary
black hole mergers, including different prior constraints on the binaries’ inclinations.
We find that prior information on the inclination can reduce the localization
volume by a factor of 3. We discuss two astrophysical scenarios of interest: (i)
follow-up searches for beamed electromagnetic/neutrino counterparts and (ii) mergers
in the accretion discs of active galactic nuclei.'
article_processing_charge: No
article_type: original
author:
- first_name: K Rainer
full_name: Corley, K Rainer
last_name: Corley
- first_name: Imre
full_name: Bartos, Imre
last_name: Bartos
- first_name: Leo P
full_name: Singer, Leo P
last_name: Singer
- first_name: Andrew R
full_name: Williamson, Andrew R
last_name: Williamson
- first_name: Zoltán
full_name: Haiman, Zoltán
id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
last_name: Haiman
- first_name: Bence
full_name: Kocsis, Bence
last_name: Kocsis
- first_name: Samaya
full_name: Nissanke, Samaya
last_name: Nissanke
- first_name: Zsuzsa
full_name: Márka, Zsuzsa
last_name: Márka
- first_name: Szabolcs
full_name: Márka, Szabolcs
last_name: Márka
citation:
ama: Corley KR, Bartos I, Singer LP, et al. Localization of binary black hole mergers
with known inclination. Monthly Notices of the Royal Astronomical Society.
2019;488(3):4459-4463. doi:10.1093/mnras/stz2072
apa: Corley, K. R., Bartos, I., Singer, L. P., Williamson, A. R., Haiman, Z., Kocsis,
B., … Márka, S. (2019). Localization of binary black hole mergers with known inclination.
Monthly Notices of the Royal Astronomical Society. Oxford University Press.
https://doi.org/10.1093/mnras/stz2072
chicago: Corley, K Rainer, Imre Bartos, Leo P Singer, Andrew R Williamson, Zoltán
Haiman, Bence Kocsis, Samaya Nissanke, Zsuzsa Márka, and Szabolcs Márka. “Localization
of Binary Black Hole Mergers with Known Inclination.” Monthly Notices of the
Royal Astronomical Society. Oxford University Press, 2019. https://doi.org/10.1093/mnras/stz2072.
ieee: K. R. Corley et al., “Localization of binary black hole mergers with
known inclination,” Monthly Notices of the Royal Astronomical Society,
vol. 488, no. 3. Oxford University Press, pp. 4459–4463, 2019.
ista: Corley KR, Bartos I, Singer LP, Williamson AR, Haiman Z, Kocsis B, Nissanke
S, Márka Z, Márka S. 2019. Localization of binary black hole mergers with known
inclination. Monthly Notices of the Royal Astronomical Society. 488(3), 4459–4463.
mla: Corley, K. Rainer, et al. “Localization of Binary Black Hole Mergers with Known
Inclination.” Monthly Notices of the Royal Astronomical Society, vol. 488,
no. 3, Oxford University Press, 2019, pp. 4459–63, doi:10.1093/mnras/stz2072.
short: K.R. Corley, I. Bartos, L.P. Singer, A.R. Williamson, Z. Haiman, B. Kocsis,
S. Nissanke, Z. Márka, S. Márka, Monthly Notices of the Royal Astronomical Society
488 (2019) 4459–4463.
date_created: 2024-09-05T08:51:22Z
date_published: 2019-07-30T00:00:00Z
date_updated: 2024-09-10T13:26:28Z
day: '30'
doi: 10.1093/mnras/stz2072
extern: '1'
intvolume: ' 488'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/mnras/stz2072
month: '07'
oa: 1
oa_version: Published Version
page: 4459-4463
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
issn:
- 0035-8711
- 1365-2966
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Localization of binary black hole mergers with known inclination
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 488
year: '2019'
...
---
_id: '17556'
abstract:
- lang: eng
text: The abundance of molecular hydrogen (H2), the primary coolant in primordial
gas, is critical for the thermodynamic evolution and star-formation histories
in early protogalaxies. Determining the photodissociation rate of H2 by an incident
Lyman-Werner (LW) flux is thus crucial, but prohibitively expensive to calculate
on the fly in simulations. The rate is sensitive to the H2 rovibrational distribution,
which in turn depends on the gas density, temperature, and incident LW radiation
field. We use the publicly available cloudy package to model primordial gas clouds
and compare exact photodissociation rate calculations to commonly-used fitting
formulae. We find the fit from Wolcott-Green et al. (2011) is most accurate for
moderate densities n~10^3 cm^{-3} and temperatures, T~10^3K, and we provide a
new fit, which captures the increase in the rate at higher densities and temperatures,
owing to the increased excited rovibrational populations in this regime. Our new
fit has typical errors of a few percent percent up to n =<10^7 cm^{-3}, T =< 8000K,
and H2 column density NH2 =<10^{17} cm^{-2}, and can be easily utilized in simulations.
We also show that pumping of the excited rovibrational states of H2 by a strong
LW flux further modifies the level populations when the gas density is low, and
noticeably decreases self-shielding for J_21 > 10^3 and n < 10^2 cm^{-3}. This
may lower the "critical flux" at which primordial gas remains H2-poor in some
protogalaxies, enabling massive black hole seed formation.
article_processing_charge: No
article_type: original
author:
- first_name: J
full_name: Wolcott-Green, J
last_name: Wolcott-Green
- first_name: Zoltán
full_name: Haiman, Zoltán
id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
last_name: Haiman
citation:
ama: 'Wolcott-Green J, Haiman Z. H2 self-shielding with non-LTE rovibrational populations:
Implications for cooling in protogalaxies. Monthly Notices of the Royal Astronomical
Society. 2019;484(2):2467-2473. doi:10.1093/mnras/sty3280'
apa: 'Wolcott-Green, J., & Haiman, Z. (2019). H2 self-shielding with non-LTE
rovibrational populations: Implications for cooling in protogalaxies. Monthly
Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/sty3280'
chicago: 'Wolcott-Green, J, and Zoltán Haiman. “H2 Self-Shielding with Non-LTE Rovibrational
Populations: Implications for Cooling in Protogalaxies.” Monthly Notices of
the Royal Astronomical Society. Oxford University Press, 2019. https://doi.org/10.1093/mnras/sty3280.'
ieee: 'J. Wolcott-Green and Z. Haiman, “H2 self-shielding with non-LTE rovibrational
populations: Implications for cooling in protogalaxies,” Monthly Notices of
the Royal Astronomical Society, vol. 484, no. 2. Oxford University Press,
pp. 2467–2473, 2019.'
ista: 'Wolcott-Green J, Haiman Z. 2019. H2 self-shielding with non-LTE rovibrational
populations: Implications for cooling in protogalaxies. Monthly Notices of the
Royal Astronomical Society. 484(2), 2467–2473.'
mla: 'Wolcott-Green, J., and Zoltán Haiman. “H2 Self-Shielding with Non-LTE Rovibrational
Populations: Implications for Cooling in Protogalaxies.” Monthly Notices of
the Royal Astronomical Society, vol. 484, no. 2, Oxford University Press,
2019, pp. 2467–73, doi:10.1093/mnras/sty3280.'
short: J. Wolcott-Green, Z. Haiman, Monthly Notices of the Royal Astronomical Society
484 (2019) 2467–2473.
date_created: 2024-09-05T10:24:40Z
date_published: 2019-01-16T00:00:00Z
date_updated: 2024-09-18T12:00:29Z
day: '16'
doi: 10.1093/mnras/sty3280
extern: '1'
intvolume: ' 484'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/mnras/sty3280
month: '01'
oa: 1
oa_version: Published Version
page: 2467-2473
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
issn:
- 0035-8711
- 1365-2966
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'H2 self-shielding with non-LTE rovibrational populations: Implications for
cooling in protogalaxies'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 484
year: '2019'
...
---
_id: '17565'
abstract:
- lang: eng
text: 'The coalescence of a compact object with a 104−107M⊙ supermassive black hole
(SMBH) produces mHz gravitational waves (GWs) detectable by the future Laser Interferometer
Space Antenna (LISA). If such an inspiral occurs in the accretion disc of an active
galactic nucleus (AGN), the gas torques imprint a small deviation in the GW waveform.
Here we present two-dimensional hydrodynamical simulations with the moving-mesh
code DISCO of a BH inspiraling at the GW rate in a binary system with a mass ratio
q=M2/M1=10−3, embedded in an accretion disc. We assume a locally isothermal equation
of state for the gas (with Mach number M=20) and implement a standard α-prescription
for its viscosity (with α=0.03). We find disc torques on the binary that are weaker
than in previous semi-analytic toy models, and are in the opposite direction:
the gas disc slows down, rather than speeds up the inspiral. We compute the resulting
deviations in the GW waveform, which scale linearly with the mass of the disc.
The SNR of these deviations accumulates mostly at high frequencies, and becomes
detectable in a 5-year LISA observation if the total phase shift exceeds a few
radians. We find that this occurs if the disc surface density exceeds Σ0≳102−3gcm−2,
as may be the case in thin discs with near-Eddington accretion rates. Since the
characteristic imprint on the GW signal is strongly dependent on disc parameters,
a LISA detection of an intermediate mass ratio inspiral would probe the physics
of AGN discs and migration.'
article_processing_charge: No
article_type: original
author:
- first_name: A M
full_name: Derdzinski, A M
last_name: Derdzinski
- first_name: D
full_name: D’Orazio, D
last_name: D’Orazio
- first_name: P
full_name: Duffell, P
last_name: Duffell
- first_name: Zoltán
full_name: Haiman, Zoltán
id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
last_name: Haiman
- first_name: A
full_name: MacFadyen, A
last_name: MacFadyen
citation:
ama: 'Derdzinski AM, D’Orazio D, Duffell P, Haiman Z, MacFadyen A. Probing gas disc
physics with LISA: simulations of an intermediate mass ratio inspiral in an accretion
disc. Monthly Notices of the Royal Astronomical Society. 2019;486(2):2754-2765.
doi:10.1093/mnras/stz1026'
apa: 'Derdzinski, A. M., D’Orazio, D., Duffell, P., Haiman, Z., & MacFadyen,
A. (2019). Probing gas disc physics with LISA: simulations of an intermediate
mass ratio inspiral in an accretion disc. Monthly Notices of the Royal Astronomical
Society. Oxford University Press. https://doi.org/10.1093/mnras/stz1026'
chicago: 'Derdzinski, A M, D D’Orazio, P Duffell, Zoltán Haiman, and A MacFadyen.
“Probing Gas Disc Physics with LISA: Simulations of an Intermediate Mass Ratio
Inspiral in an Accretion Disc.” Monthly Notices of the Royal Astronomical Society.
Oxford University Press, 2019. https://doi.org/10.1093/mnras/stz1026.'
ieee: 'A. M. Derdzinski, D. D’Orazio, P. Duffell, Z. Haiman, and A. MacFadyen, “Probing
gas disc physics with LISA: simulations of an intermediate mass ratio inspiral
in an accretion disc,” Monthly Notices of the Royal Astronomical Society,
vol. 486, no. 2. Oxford University Press, pp. 2754–2765, 2019.'
ista: 'Derdzinski AM, D’Orazio D, Duffell P, Haiman Z, MacFadyen A. 2019. Probing
gas disc physics with LISA: simulations of an intermediate mass ratio inspiral
in an accretion disc. Monthly Notices of the Royal Astronomical Society. 486(2),
2754–2765.'
mla: 'Derdzinski, A. M., et al. “Probing Gas Disc Physics with LISA: Simulations
of an Intermediate Mass Ratio Inspiral in an Accretion Disc.” Monthly Notices
of the Royal Astronomical Society, vol. 486, no. 2, Oxford University Press,
2019, pp. 2754–65, doi:10.1093/mnras/stz1026.'
short: A.M. Derdzinski, D. D’Orazio, P. Duffell, Z. Haiman, A. MacFadyen, Monthly
Notices of the Royal Astronomical Society 486 (2019) 2754–2765.
date_created: 2024-09-05T12:05:43Z
date_published: 2019-09-05T00:00:00Z
date_updated: 2024-09-18T11:01:36Z
day: '05'
doi: 10.1093/mnras/stz1026
extern: '1'
intvolume: ' 486'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/mnras/stz1026
month: '09'
oa: 1
oa_version: Published Version
page: 2754-2765
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
issn:
- 0035-8711
- 1365-2966
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1093/mnras/stz2435
scopus_import: '1'
status: public
title: 'Probing gas disc physics with LISA: simulations of an intermediate mass ratio
inspiral in an accretion disc'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 486
year: '2019'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '17916'
abstract:
- lang: eng
text: Electric fields have been proposed as having a distinct ability to catalyze
chemical reactions through the stabilization of polar or ionic intermediate transition
states. Although field-assisted catalysis is being researched, the ability to
catalyze reactions in solution using electric fields remains elusive and the understanding
of mechanisms of such catalysis is sparse. Here we show that an electric field
can catalyze the cis-to-trans isomerization of [3]cumulene derivatives in solution,
in a scanning tunneling microscope. We further show that the external electric
field can alter the thermodynamics inhibiting the trans-to-cis reverse reaction,
endowing the selectivity toward trans isomer. Using density functional theory-based
calculations, we find that the applied electric field promotes a zwitterionic
resonance form, which ensures a lower energy transition state for the isomerization
reaction. The field also stabilizes the trans form, relative to the cis, dictating
the cis/trans thermodynamics, driving the equilibrium product exclusively toward
the trans.
article_number: '4482'
article_processing_charge: Yes
article_type: original
author:
- first_name: Yaping
full_name: Zang, Yaping
last_name: Zang
- first_name: Qi
full_name: Zou, Qi
last_name: Zou
- first_name: Tianren
full_name: Fu, Tianren
last_name: Fu
- first_name: Fay
full_name: Ng, Fay
last_name: Ng
- first_name: Brandon
full_name: Fowler, Brandon
last_name: Fowler
- first_name: Jingjing
full_name: Yang, Jingjing
last_name: Yang
- first_name: Hexing
full_name: Li, Hexing
last_name: Li
- first_name: Michael L.
full_name: Steigerwald, Michael L.
last_name: Steigerwald
- first_name: Colin
full_name: Nuckolls, Colin
last_name: Nuckolls
- first_name: Latha
full_name: Venkataraman, Latha
id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
last_name: Venkataraman
orcid: 0000-0002-6957-6089
citation:
ama: Zang Y, Zou Q, Fu T, et al. Directing isomerization reactions of cumulenes
with electric fields. Nature Communications. 2019;10. doi:10.1038/s41467-019-12487-w
apa: Zang, Y., Zou, Q., Fu, T., Ng, F., Fowler, B., Yang, J., … Venkataraman, L.
(2019). Directing isomerization reactions of cumulenes with electric fields. Nature
Communications. Springer Nature. https://doi.org/10.1038/s41467-019-12487-w
chicago: Zang, Yaping, Qi Zou, Tianren Fu, Fay Ng, Brandon Fowler, Jingjing Yang,
Hexing Li, Michael L. Steigerwald, Colin Nuckolls, and Latha Venkataraman. “Directing
Isomerization Reactions of Cumulenes with Electric Fields.” Nature Communications.
Springer Nature, 2019. https://doi.org/10.1038/s41467-019-12487-w.
ieee: Y. Zang et al., “Directing isomerization reactions of cumulenes with
electric fields,” Nature Communications, vol. 10. Springer Nature, 2019.
ista: Zang Y, Zou Q, Fu T, Ng F, Fowler B, Yang J, Li H, Steigerwald ML, Nuckolls
C, Venkataraman L. 2019. Directing isomerization reactions of cumulenes with electric
fields. Nature Communications. 10, 4482.
mla: Zang, Yaping, et al. “Directing Isomerization Reactions of Cumulenes with Electric
Fields.” Nature Communications, vol. 10, 4482, Springer Nature, 2019, doi:10.1038/s41467-019-12487-w.
short: Y. Zang, Q. Zou, T. Fu, F. Ng, B. Fowler, J. Yang, H. Li, M.L. Steigerwald,
C. Nuckolls, L. Venkataraman, Nature Communications 10 (2019).
date_created: 2024-09-09T07:40:44Z
date_published: 2019-10-02T00:00:00Z
date_updated: 2024-12-10T12:32:33Z
day: '02'
doi: 10.1038/s41467-019-12487-w
extern: '1'
external_id:
pmid:
- '31578333'
intvolume: ' 10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1038/s41467-019-12487-w
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
issn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directing isomerization reactions of cumulenes with electric fields
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2019'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '17924'
abstract:
- lang: eng
text: We demonstrate that imidazole based π–π stacked dimers form strong and efficient
conductance pathways in single-molecule junctions using the scanning-tunneling
microscope-break junction (STM-BJ) technique and density functional theory-based
calculations. We first characterize an imidazole-gold contact by measuring the
conductance of imidazolyl-terminated alkanes (im-N-im, N = 3–6). We show that
the conductance of these alkanes decays exponentially with increasing length,
indicating that the mechanism for electron transport is through tunneling or super-exchange.
We also reveal that π–π stacked dimers can be formed between imidazoles and have
better coupling than through-bond tunneling. These experimental results are rationalized
by calculations of molecular junction transmission using non-equilibrium Green's
function formalism. This study verifies the capability of imidazole as a Au-binding
ligand to form stable single- and π-stacked molecule junctions at room temperature.
article_processing_charge: Yes
article_type: original
author:
- first_name: Tianren
full_name: Fu, Tianren
last_name: Fu
- first_name: Shanelle
full_name: Smith, Shanelle
last_name: Smith
- first_name: María
full_name: Camarasa-Gómez, María
last_name: Camarasa-Gómez
- first_name: Xiaofang
full_name: Yu, Xiaofang
last_name: Yu
- first_name: Jiayi
full_name: Xue, Jiayi
last_name: Xue
- first_name: Colin
full_name: Nuckolls, Colin
last_name: Nuckolls
- first_name: Ferdinand
full_name: Evers, Ferdinand
last_name: Evers
- first_name: Latha
full_name: Venkataraman, Latha
id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
last_name: Venkataraman
orcid: 0000-0002-6957-6089
- first_name: Sujun
full_name: Wei, Sujun
last_name: Wei
citation:
ama: Fu T, Smith S, Camarasa-Gómez M, et al. Enhanced coupling through π-stacking
in imidazole-based molecular junctions. Chemical Science. 2019;10(43):9998-10002.
doi:10.1039/c9sc03760h
apa: Fu, T., Smith, S., Camarasa-Gómez, M., Yu, X., Xue, J., Nuckolls, C., … Wei,
S. (2019). Enhanced coupling through π-stacking in imidazole-based molecular junctions.
Chemical Science. Royal Society of Chemistry. https://doi.org/10.1039/c9sc03760h
chicago: Fu, Tianren, Shanelle Smith, María Camarasa-Gómez, Xiaofang Yu, Jiayi Xue,
Colin Nuckolls, Ferdinand Evers, Latha Venkataraman, and Sujun Wei. “Enhanced
Coupling through π-Stacking in Imidazole-Based Molecular Junctions.” Chemical
Science. Royal Society of Chemistry, 2019. https://doi.org/10.1039/c9sc03760h.
ieee: T. Fu et al., “Enhanced coupling through π-stacking in imidazole-based
molecular junctions,” Chemical Science, vol. 10, no. 43. Royal Society
of Chemistry, pp. 9998–10002, 2019.
ista: Fu T, Smith S, Camarasa-Gómez M, Yu X, Xue J, Nuckolls C, Evers F, Venkataraman
L, Wei S. 2019. Enhanced coupling through π-stacking in imidazole-based molecular
junctions. Chemical Science. 10(43), 9998–10002.
mla: Fu, Tianren, et al. “Enhanced Coupling through π-Stacking in Imidazole-Based
Molecular Junctions.” Chemical Science, vol. 10, no. 43, Royal Society
of Chemistry, 2019, pp. 9998–10002, doi:10.1039/c9sc03760h.
short: T. Fu, S. Smith, M. Camarasa-Gómez, X. Yu, J. Xue, C. Nuckolls, F. Evers,
L. Venkataraman, S. Wei, Chemical Science 10 (2019) 9998–10002.
date_created: 2024-09-09T07:49:24Z
date_published: 2019-09-16T00:00:00Z
date_updated: 2024-12-11T08:08:34Z
day: '16'
doi: 10.1039/c9sc03760h
extern: '1'
external_id:
pmid:
- '32055356'
intvolume: ' 10'
issue: '43'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/3.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.1039/C9SC03760H
month: '09'
oa: 1
oa_version: Published Version
page: 9998-10002
pmid: 1
publication: Chemical Science
publication_identifier:
eissn:
- 2041-6539
issn:
- 2041-6520
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Enhanced coupling through π-stacking in imidazole-based molecular junctions
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/3.0/legalcode
name: Creative Commons Attribution-NonCommercial 3.0 Unported (CC BY-NC 3.0)
short: CC BY-NC (3.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2019'
...
---
_id: '18269'
abstract:
- lang: eng
text: 'In the past few years, deep learning-based methods have demonstrated enormous
success for solving inverse problems in medical imaging. In this work, we address
the following question: Given a set of measurements obtained from real imaging
experiments, what is the best way to use a learnable model and the physics of
the modality to solve the inverse problem and reconstruct the latent image? Standard
supervised learning based methods approach this problem by collecting data sets
of known latent images and their corresponding measurements. However, these methods
are often impractical due to the lack of availability of appropriately sized training
sets, and, more generally, due to the inherent difficulty in measuring the “groundtruth”
latent image. In light of this, we propose a self-supervised approach to training
inverse models in medical imaging in the absence of aligned data. Our method only
requiring access to the measurements and the forward model at training. We showcase
its effectiveness on inverse problems arising in accelerated magnetic resonance
imaging (MRI). '
article_processing_charge: No
author:
- first_name: Ortal
full_name: Senouf, Ortal
last_name: Senouf
- first_name: Sanketh
full_name: Vedula, Sanketh
last_name: Vedula
- first_name: Tomer
full_name: Weiss, Tomer
last_name: Weiss
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
- first_name: Oleg
full_name: Michailovich, Oleg
last_name: Michailovich
- first_name: Michael
full_name: Zibulevsky, Michael
last_name: Zibulevsky
citation:
ama: 'Senouf O, Vedula S, Weiss T, Bronstein AM, Michailovich O, Zibulevsky M. Self-supervised
learning of inverse problem solvers in medical imaging. In: First MICCAI Workshop,
DART 2019, and First International Workshop, MIL3ID 2019. Vol 11795. Springer
International Publishing; 2019:111-119. doi:10.1007/978-3-030-33391-1_13'
apa: 'Senouf, O., Vedula, S., Weiss, T., Bronstein, A. M., Michailovich, O., &
Zibulevsky, M. (2019). Self-supervised learning of inverse problem solvers in
medical imaging. In First MICCAI Workshop, DART 2019, and First International
Workshop, MIL3ID 2019 (Vol. 11795, pp. 111–119). Shenzhen, China: Springer
International Publishing. https://doi.org/10.1007/978-3-030-33391-1_13'
chicago: Senouf, Ortal, Sanketh Vedula, Tomer Weiss, Alex M. Bronstein, Oleg Michailovich,
and Michael Zibulevsky. “Self-Supervised Learning of Inverse Problem Solvers in
Medical Imaging.” In First MICCAI Workshop, DART 2019, and First International
Workshop, MIL3ID 2019, 11795:111–19. Springer International Publishing, 2019.
https://doi.org/10.1007/978-3-030-33391-1_13.
ieee: O. Senouf, S. Vedula, T. Weiss, A. M. Bronstein, O. Michailovich, and M. Zibulevsky,
“Self-supervised learning of inverse problem solvers in medical imaging,” in First
MICCAI Workshop, DART 2019, and First International Workshop, MIL3ID 2019,
Shenzhen, China, 2019, vol. 11795, pp. 111–119.
ista: 'Senouf O, Vedula S, Weiss T, Bronstein AM, Michailovich O, Zibulevsky M.
2019. Self-supervised learning of inverse problem solvers in medical imaging.
First MICCAI Workshop, DART 2019, and First International Workshop, MIL3ID 2019.
DART: MICCAI Workshop on Domain Adaptation and Representation Transfer and MIL3ID:
International Workshop on Medical Image Learning with Less Labels and Imperfect
Data vol. 11795, 111–119.'
mla: Senouf, Ortal, et al. “Self-Supervised Learning of Inverse Problem Solvers
in Medical Imaging.” First MICCAI Workshop, DART 2019, and First International
Workshop, MIL3ID 2019, vol. 11795, Springer International Publishing, 2019,
pp. 111–19, doi:10.1007/978-3-030-33391-1_13.
short: O. Senouf, S. Vedula, T. Weiss, A.M. Bronstein, O. Michailovich, M. Zibulevsky,
in:, First MICCAI Workshop, DART 2019, and First International Workshop, MIL3ID
2019, Springer International Publishing, 2019, pp. 111–119.
conference:
end_date: 2019-10-17
location: Shenzhen, China
name: 'DART: MICCAI Workshop on Domain Adaptation and Representation Transfer and
MIL3ID: International Workshop on Medical Image Learning with Less Labels and
Imperfect Data'
start_date: 2019-10-13
date_created: 2024-10-09T07:41:33Z
date_published: 2019-10-12T00:00:00Z
date_updated: 2025-01-23T14:50:36Z
day: '12'
doi: 10.1007/978-3-030-33391-1_13
extern: '1'
intvolume: ' 11795'
language:
- iso: eng
month: '10'
oa_version: None
page: 111 - 119
publication: First MICCAI Workshop, DART 2019, and First International Workshop, MIL3ID
2019
publication_identifier:
eisbn:
- '9783030333911'
eissn:
- 1611-3349
isbn:
- '9783030333904'
issn:
- 0302-9743
publication_status: published
publisher: Springer International Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-supervised learning of inverse problem solvers in medical imaging
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 11795
year: '2019'
...
---
_id: '7639'
abstract:
- lang: eng
text: Deep neural networks (DNNs) have become increasingly important due to their
excellent empirical performance on a wide range of problems. However, regularization
is generally achieved by indirect means, largely due to the complex set of functions
defined by a network and the difficulty in measuring function complexity. There
exists no method in the literature for additive regularization based on a norm
of the function, as is classically considered in statistical learning theory.
In this work, we study the tractability of function norms for deep neural networks
with ReLU activations. We provide, to the best of our knowledge, the first proof
in the literature of the NP-hardness of computing function norms of DNNs of 3
or more layers. We also highlight a fundamental difference between shallow and
deep networks. In the light on these results, we propose a new regularization
strategy based on approximate function norms, and show its efficiency on a segmentation
task with a DNN.
article_number: 748-752
article_processing_charge: No
author:
- first_name: Amal
full_name: Rannen-Triki, Amal
last_name: Rannen-Triki
- first_name: Maxim
full_name: Berman, Maxim
last_name: Berman
- first_name: Vladimir
full_name: Kolmogorov, Vladimir
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Matthew B.
full_name: Blaschko, Matthew B.
last_name: Blaschko
citation:
ama: 'Rannen-Triki A, Berman M, Kolmogorov V, Blaschko MB. Function norms for neural
networks. In: Proceedings of the 2019 International Conference on Computer
Vision Workshop. IEEE; 2019. doi:10.1109/ICCVW.2019.00097'
apa: 'Rannen-Triki, A., Berman, M., Kolmogorov, V., & Blaschko, M. B. (2019).
Function norms for neural networks. In Proceedings of the 2019 International
Conference on Computer Vision Workshop. Seoul, South Korea: IEEE. https://doi.org/10.1109/ICCVW.2019.00097'
chicago: Rannen-Triki, Amal, Maxim Berman, Vladimir Kolmogorov, and Matthew B. Blaschko.
“Function Norms for Neural Networks.” In Proceedings of the 2019 International
Conference on Computer Vision Workshop. IEEE, 2019. https://doi.org/10.1109/ICCVW.2019.00097.
ieee: A. Rannen-Triki, M. Berman, V. Kolmogorov, and M. B. Blaschko, “Function norms
for neural networks,” in Proceedings of the 2019 International Conference on
Computer Vision Workshop, Seoul, South Korea, 2019.
ista: 'Rannen-Triki A, Berman M, Kolmogorov V, Blaschko MB. 2019. Function norms
for neural networks. Proceedings of the 2019 International Conference on Computer
Vision Workshop. ICCVW: International Conference on Computer Vision Workshop,
748–752.'
mla: Rannen-Triki, Amal, et al. “Function Norms for Neural Networks.” Proceedings
of the 2019 International Conference on Computer Vision Workshop, 748–752,
IEEE, 2019, doi:10.1109/ICCVW.2019.00097.
short: A. Rannen-Triki, M. Berman, V. Kolmogorov, M.B. Blaschko, in:, Proceedings
of the 2019 International Conference on Computer Vision Workshop, IEEE, 2019.
conference:
end_date: 2019-10-28
location: Seoul, South Korea
name: 'ICCVW: International Conference on Computer Vision Workshop'
start_date: 2019-10-27
date_created: 2020-04-05T22:00:50Z
date_published: 2019-10-01T00:00:00Z
date_updated: 2023-09-08T11:19:12Z
day: '01'
department:
- _id: VlKo
doi: 10.1109/ICCVW.2019.00097
external_id:
isi:
- '000554591600090'
isi: 1
language:
- iso: eng
month: '10'
oa_version: None
publication: Proceedings of the 2019 International Conference on Computer Vision Workshop
publication_identifier:
isbn:
- '9781728150239'
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Function norms for neural networks
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2019'
...
---
_id: '7711'
abstract:
- lang: eng
text: The nature and extent of mitochondrial DNA variation in a population and how
it affects traits is poorly understood. Here we resequence the mitochondrial genomes
of 169 Drosophila Genetic Reference Panel lines, identifying 231 variants that
stratify along 12 mitochondrial haplotypes. We identify 1,845 cases of mitonuclear
allelic imbalances, thus implying that mitochondrial haplotypes are reflected
in the nuclear genome. However, no major fitness effects are associated with mitonuclear
imbalance, suggesting that such imbalances reflect population structure at the
mitochondrial level rather than genomic incompatibilities. Although mitochondrial
haplotypes have no direct impact on mitochondrial respiration, some haplotypes
are associated with stress- and metabolism-related phenotypes, including food
intake in males. Finally, through reciprocal swapping of mitochondrial genomes,
we demonstrate that a mitochondrial haplotype associated with high food intake
can rescue a low food intake phenotype. Together, our findings provide new insight
into population structure at the mitochondrial level and point to the importance
of incorporating mitochondrial haplotypes in genotype–phenotype relationship studies.
article_processing_charge: No
article_type: original
author:
- first_name: Roel P. J.
full_name: Bevers, Roel P. J.
last_name: Bevers
- first_name: Maria
full_name: Litovchenko, Maria
last_name: Litovchenko
- first_name: Adamandia
full_name: Kapopoulou, Adamandia
last_name: Kapopoulou
- first_name: Virginie S.
full_name: Braman, Virginie S.
last_name: Braman
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
- first_name: Johan
full_name: Auwerx, Johan
last_name: Auwerx
- first_name: Brian
full_name: Hollis, Brian
last_name: Hollis
- first_name: Bart
full_name: Deplancke, Bart
last_name: Deplancke
citation:
ama: Bevers RPJ, Litovchenko M, Kapopoulou A, et al. Mitochondrial haplotypes affect
metabolic phenotypes in the Drosophila Genetic Reference Panel. Nature Metabolism.
2019;1(12):1226-1242. doi:10.1038/s42255-019-0147-3
apa: Bevers, R. P. J., Litovchenko, M., Kapopoulou, A., Braman, V. S., Robinson,
M. R., Auwerx, J., … Deplancke, B. (2019). Mitochondrial haplotypes affect metabolic
phenotypes in the Drosophila Genetic Reference Panel. Nature Metabolism.
Springer Nature. https://doi.org/10.1038/s42255-019-0147-3
chicago: Bevers, Roel P. J., Maria Litovchenko, Adamandia Kapopoulou, Virginie S.
Braman, Matthew Richard Robinson, Johan Auwerx, Brian Hollis, and Bart Deplancke.
“Mitochondrial Haplotypes Affect Metabolic Phenotypes in the Drosophila Genetic
Reference Panel.” Nature Metabolism. Springer Nature, 2019. https://doi.org/10.1038/s42255-019-0147-3.
ieee: R. P. J. Bevers et al., “Mitochondrial haplotypes affect metabolic
phenotypes in the Drosophila Genetic Reference Panel,” Nature Metabolism,
vol. 1, no. 12. Springer Nature, pp. 1226–1242, 2019.
ista: Bevers RPJ, Litovchenko M, Kapopoulou A, Braman VS, Robinson MR, Auwerx J,
Hollis B, Deplancke B. 2019. Mitochondrial haplotypes affect metabolic phenotypes
in the Drosophila Genetic Reference Panel. Nature Metabolism. 1(12), 1226–1242.
mla: Bevers, Roel P. J., et al. “Mitochondrial Haplotypes Affect Metabolic Phenotypes
in the Drosophila Genetic Reference Panel.” Nature Metabolism, vol. 1,
no. 12, Springer Nature, 2019, pp. 1226–42, doi:10.1038/s42255-019-0147-3.
short: R.P.J. Bevers, M. Litovchenko, A. Kapopoulou, V.S. Braman, M.R. Robinson,
J. Auwerx, B. Hollis, B. Deplancke, Nature Metabolism 1 (2019) 1226–1242.
date_created: 2020-04-30T10:40:56Z
date_published: 2019-12-09T00:00:00Z
date_updated: 2021-01-12T08:15:01Z
day: '09'
doi: 10.1038/s42255-019-0147-3
extern: '1'
intvolume: ' 1'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
page: 1226-1242
publication: Nature Metabolism
publication_identifier:
issn:
- 2522-5812
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1038/s42255-020-0202-0
status: public
title: Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic
Reference Panel
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2019'
...
---
_id: '7950'
abstract:
- lang: eng
text: "The input to the token swapping problem is a graph with vertices v1, v2,
. . . , vn, and n tokens with labels 1,2, . . . , n, one on each vertex. The
goal is to get token i to vertex vi for all i= 1, . . . , n using a minimum number
of swaps, where a swap exchanges the tokens on the endpoints of an edge.Token
swapping on a tree, also known as “sorting with a transposition tree,” is not
known to be in P nor NP-complete. We present some partial results:\r\n1. An
optimum swap sequence may need to perform a swap on a leaf vertex that has the
correct token (a “happy leaf”), disproving a conjecture of Vaughan.\r\n2. Any
algorithm that fixes happy leaves—as all known approximation algorithms for the
problem do—has approximation factor at least 4/3. Furthermore, the two best-known
2-approximation algorithms have approximation factor exactly 2.\r\n3. A generalized
problem—weighted coloured token swapping—is NP-complete on trees, but solvable
in polynomial time on paths and stars. In this version, tokens and vertices
\ have colours, and colours have weights. The goal is to get every
token to a vertex of the same colour, and the cost of a swap is the sum of the
weights of the two tokens involved."
article_number: '1903.06981'
article_processing_charge: No
arxiv: 1
author:
- first_name: Ahmad
full_name: Biniaz, Ahmad
last_name: Biniaz
- first_name: Kshitij
full_name: Jain, Kshitij
last_name: Jain
- first_name: Anna
full_name: Lubiw, Anna
last_name: Lubiw
- first_name: Zuzana
full_name: Masárová, Zuzana
id: 45CFE238-F248-11E8-B48F-1D18A9856A87
last_name: Masárová
orcid: 0000-0002-6660-1322
- first_name: Tillmann
full_name: Miltzow, Tillmann
last_name: Miltzow
- first_name: Debajyoti
full_name: Mondal, Debajyoti
last_name: Mondal
- first_name: Anurag Murty
full_name: Naredla, Anurag Murty
last_name: Naredla
- first_name: Josef
full_name: Tkadlec, Josef
id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
last_name: Tkadlec
orcid: 0000-0002-1097-9684
- first_name: Alexi
full_name: Turcotte, Alexi
last_name: Turcotte
citation:
ama: Biniaz A, Jain K, Lubiw A, et al. Token swapping on trees. arXiv. doi:10.48550/arXiv.1903.06981
apa: Biniaz, A., Jain, K., Lubiw, A., Masárová, Z., Miltzow, T., Mondal, D., … Turcotte,
A. (n.d.). Token swapping on trees. arXiv. https://doi.org/10.48550/arXiv.1903.06981
chicago: Biniaz, Ahmad, Kshitij Jain, Anna Lubiw, Zuzana Masárová, Tillmann Miltzow,
Debajyoti Mondal, Anurag Murty Naredla, Josef Tkadlec, and Alexi Turcotte. “Token
Swapping on Trees.” ArXiv, n.d. https://doi.org/10.48550/arXiv.1903.06981.
ieee: A. Biniaz et al., “Token swapping on trees,” arXiv. .
ista: Biniaz A, Jain K, Lubiw A, Masárová Z, Miltzow T, Mondal D, Naredla AM, Tkadlec
J, Turcotte A. Token swapping on trees. arXiv, 1903.06981.
mla: Biniaz, Ahmad, et al. “Token Swapping on Trees.” ArXiv, 1903.06981,
doi:10.48550/arXiv.1903.06981.
short: A. Biniaz, K. Jain, A. Lubiw, Z. Masárová, T. Miltzow, D. Mondal, A.M. Naredla,
J. Tkadlec, A. Turcotte, ArXiv (n.d.).
date_created: 2020-06-08T12:25:25Z
date_published: 2019-03-16T00:00:00Z
date_updated: 2026-04-08T07:23:00Z
day: '16'
department:
- _id: HeEd
- _id: UlWa
- _id: KrCh
doi: 10.48550/arXiv.1903.06981
external_id:
arxiv:
- '1903.06981'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1903.06981
month: '03'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: draft
related_material:
record:
- id: '12833'
relation: later_version
status: public
- id: '7944'
relation: dissertation_contains
status: public
status: public
title: Token swapping on trees
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '80'
abstract:
- lang: eng
text: 'We consider an interacting, dilute Bose gas trapped in a harmonic potential
at a positive temperature. The system is analyzed in a combination of a thermodynamic
and a Gross–Pitaevskii (GP) limit where the trap frequency ω, the temperature
T, and the particle number N are related by N∼ (T/ ω) 3→ ∞ while the scattering
length is so small that the interaction energy per particle around the center
of the trap is of the same order of magnitude as the spectral gap in the trap.
We prove that the difference between the canonical free energy of the interacting
gas and the one of the noninteracting system can be obtained by minimizing the
GP energy functional. We also prove Bose–Einstein condensation in the following
sense: The one-particle density matrix of any approximate minimizer of the canonical
free energy functional is to leading order given by that of the noninteracting
gas but with the free condensate wavefunction replaced by the GP minimizer.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Andreas
full_name: Deuchert, Andreas
id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
last_name: Deuchert
orcid: 0000-0003-3146-6746
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jakob
full_name: Yngvason, Jakob
last_name: Yngvason
citation:
ama: Deuchert A, Seiringer R, Yngvason J. Bose–Einstein condensation in a dilute,
trapped gas at positive temperature. Communications in Mathematical Physics.
2019;368(2):723-776. doi:10.1007/s00220-018-3239-0
apa: Deuchert, A., Seiringer, R., & Yngvason, J. (2019). Bose–Einstein condensation
in a dilute, trapped gas at positive temperature. Communications in Mathematical
Physics. Springer. https://doi.org/10.1007/s00220-018-3239-0
chicago: Deuchert, Andreas, Robert Seiringer, and Jakob Yngvason. “Bose–Einstein
Condensation in a Dilute, Trapped Gas at Positive Temperature.” Communications
in Mathematical Physics. Springer, 2019. https://doi.org/10.1007/s00220-018-3239-0.
ieee: A. Deuchert, R. Seiringer, and J. Yngvason, “Bose–Einstein condensation in
a dilute, trapped gas at positive temperature,” Communications in Mathematical
Physics, vol. 368, no. 2. Springer, pp. 723–776, 2019.
ista: Deuchert A, Seiringer R, Yngvason J. 2019. Bose–Einstein condensation in a
dilute, trapped gas at positive temperature. Communications in Mathematical Physics.
368(2), 723–776.
mla: Deuchert, Andreas, et al. “Bose–Einstein Condensation in a Dilute, Trapped
Gas at Positive Temperature.” Communications in Mathematical Physics, vol.
368, no. 2, Springer, 2019, pp. 723–76, doi:10.1007/s00220-018-3239-0.
short: A. Deuchert, R. Seiringer, J. Yngvason, Communications in Mathematical Physics
368 (2019) 723–776.
date_created: 2018-12-11T11:44:31Z
date_published: 2019-06-01T00:00:00Z
date_updated: 2025-04-14T07:27:00Z
day: '01'
ddc:
- '530'
department:
- _id: RoSe
doi: 10.1007/s00220-018-3239-0
ec_funded: 1
external_id:
isi:
- '000467796800007'
file:
- access_level: open_access
checksum: c7e9880b43ac726712c1365e9f2f73a6
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T10:34:06Z
date_updated: 2020-07-14T12:48:07Z
file_id: '5688'
file_name: 2018_CommunMathPhys_Deuchert.pdf
file_size: 893902
relation: main_file
file_date_updated: 2020-07-14T12:48:07Z
has_accepted_license: '1'
intvolume: ' 368'
isi: 1
issue: '2'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 723-776
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P27533_N27
name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
publication: Communications in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '7974'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bose–Einstein condensation in a dilute, trapped gas at positive temperature
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 368
year: '2019'
...
---
_id: '8175'
abstract:
- lang: eng
text: We study edge asymptotics of poissonized Plancherel-type measures on skew
Young diagrams (integer partitions). These measures can be seen as generalizations
of those studied by Baik--Deift--Johansson and Baik--Rains in resolving Ulam's
problem on longest increasing subsequences of random permutations and the last
passage percolation (corner growth) discrete versions thereof. Moreover they interpolate
between said measures and the uniform measure on partitions. In the new KPZ-like
1/3 exponent edge scaling limit with logarithmic corrections, we find new probability
distributions generalizing the classical Tracy--Widom GUE, GOE and GSE distributions
from the theory of random matrices.
acknowledgement: "D.B. is especially grateful to Patrik Ferrari for suggesting simplifications
in Section 3 and\r\nto Alessandra Occelli for suggesting the name for the models
of Section 2.\r\n"
article_number: '34'
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan
full_name: Betea, Dan
last_name: Betea
- first_name: Jérémie
full_name: Bouttier, Jérémie
last_name: Bouttier
- first_name: Peter
full_name: Nejjar, Peter
id: 4BF426E2-F248-11E8-B48F-1D18A9856A87
last_name: Nejjar
- first_name: Mirjana
full_name: Vuletíc, Mirjana
last_name: Vuletíc
citation:
ama: 'Betea D, Bouttier J, Nejjar P, Vuletíc M. New edge asymptotics of skew Young
diagrams via free boundaries. In: Proceedings on the 31st International Conference
on Formal Power Series and Algebraic Combinatorics. Formal Power Series and
Algebraic Combinatorics; 2019.'
apa: 'Betea, D., Bouttier, J., Nejjar, P., & Vuletíc, M. (2019). New edge asymptotics
of skew Young diagrams via free boundaries. In Proceedings on the 31st International
Conference on Formal Power Series and Algebraic Combinatorics. Ljubljana,
Slovenia: Formal Power Series and Algebraic Combinatorics.'
chicago: Betea, Dan, Jérémie Bouttier, Peter Nejjar, and Mirjana Vuletíc. “New Edge
Asymptotics of Skew Young Diagrams via Free Boundaries.” In Proceedings on
the 31st International Conference on Formal Power Series and Algebraic Combinatorics.
Formal Power Series and Algebraic Combinatorics, 2019.
ieee: D. Betea, J. Bouttier, P. Nejjar, and M. Vuletíc, “New edge asymptotics of
skew Young diagrams via free boundaries,” in Proceedings on the 31st International
Conference on Formal Power Series and Algebraic Combinatorics, Ljubljana,
Slovenia, 2019.
ista: 'Betea D, Bouttier J, Nejjar P, Vuletíc M. 2019. New edge asymptotics of skew
Young diagrams via free boundaries. Proceedings on the 31st International Conference
on Formal Power Series and Algebraic Combinatorics. FPSAC: International Conference
on Formal Power Series and Algebraic Combinatorics, 34.'
mla: Betea, Dan, et al. “New Edge Asymptotics of Skew Young Diagrams via Free Boundaries.”
Proceedings on the 31st International Conference on Formal Power Series and
Algebraic Combinatorics, 34, Formal Power Series and Algebraic Combinatorics,
2019.
short: D. Betea, J. Bouttier, P. Nejjar, M. Vuletíc, in:, Proceedings on the 31st
International Conference on Formal Power Series and Algebraic Combinatorics, Formal
Power Series and Algebraic Combinatorics, 2019.
conference:
end_date: 2019-07-05
location: Ljubljana, Slovenia
name: 'FPSAC: International Conference on Formal Power Series and Algebraic Combinatorics'
start_date: 2019-07-01
date_created: 2020-07-26T22:01:04Z
date_published: 2019-07-01T00:00:00Z
date_updated: 2021-01-12T08:17:18Z
day: '01'
department:
- _id: LaEr
ec_funded: 1
external_id:
arxiv:
- '1902.08750'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1902.08750
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
publication: Proceedings on the 31st International Conference on Formal Power Series
and Algebraic Combinatorics
publication_status: published
publisher: Formal Power Series and Algebraic Combinatorics
quality_controlled: '1'
scopus_import: '1'
status: public
title: New edge asymptotics of skew Young diagrams via free boundaries
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '8228'
abstract:
- lang: eng
text: "Background: Atopics have a lower risk for malignancies, and IgE targeted
to tumors is superior to IgG in fighting cancer. Whether IgE-mediated innate or
adaptive immune surveillance can confer protection against tumors remains unclear.\r\nObjective:
We aimed to investigate the effects of active and passive immunotherapy to the
tumor-associated antigen HER-2 in three murine models differing in Epsilon-B-cell-receptor
expression affecting the levels of expressed IgE.\r\nMethods: We compared the
levels of several serum specific anti-HER-2 antibodies (IgE, IgG1, IgG2a, IgG2b,
IgA) and the survival rates in low-IgE ΔM1M2 mice lacking the transmembrane/cytoplasmic
domain of Epsilon-B-cell-receptors expressing reduced IgE levels, high-IgE KN1
mice expressing chimeric Epsilon-Gamma1-B-cell receptors with 4-6-fold elevated
serum IgE levels, and wild type (WT) BALB/c. Prior engrafting mice with D2F2/E2
mammary tumors overexpressing HER-2, mice were vaccinated with HER-2 or vehicle
control PBS using the Th2-adjuvant Al(OH)3 (active immunotherapy), or treated
with the murine anti-HER-2 IgG1 antibody 4D5 (passive immunotherapy).\r\nResults:
Overall, among the three strains of mice, HER-2 vaccination induced significantly
higher levels of HER-2 specific IgE and IgG1 in high-IgE KN1, while low-IgE ΔM1M2
mice had higher IgG2a levels. HER-2 vaccination and passive immunotherapy prolonged
the survival in tumor-grafted WT and low-IgE ΔM1M2 strains compared with treatment
controls; active vaccination provided the highest benefit. Notably, untreated
high-IgE KN1 mice displayed the longest survival of all strains, which could not
be further extended by active or passive immunotherapy.\r\nConclusion: Active
and passive immunotherapies prolong survival in wild type and low-IgE ΔM1M2 mice
engrafted with mammary tumors. High-IgE KN1 mice have an innate survival benefit
following tumor challenge."
article_number: '100044'
article_processing_charge: No
article_type: original
author:
- first_name: Josef
full_name: Singer, Josef
last_name: Singer
orcid: 0000-0002-8701-2412
- first_name: Gertrude
full_name: Achatz-Straussberger, Gertrude
last_name: Achatz-Straussberger
- first_name: Anna
full_name: Bentley-Lukschal, Anna
last_name: Bentley-Lukschal
- first_name: Judit
full_name: Fazekas-Singer, Judit
id: 36432834-F248-11E8-B48F-1D18A9856A87
last_name: Fazekas-Singer
orcid: 0000-0002-8777-3502
- first_name: Gernot
full_name: Achatz, Gernot
last_name: Achatz
- first_name: Sophia N.
full_name: Karagiannis, Sophia N.
last_name: Karagiannis
- first_name: Erika
full_name: Jensen-Jarolim, Erika
last_name: Jensen-Jarolim
citation:
ama: 'Singer J, Achatz-Straussberger G, Bentley-Lukschal A, et al. AllergoOncology:
High innate IgE levels are decisive for the survival of cancer-bearing mice. World
Allergy Organization Journal. 2019;12(7). doi:10.1016/j.waojou.2019.100044'
apa: 'Singer, J., Achatz-Straussberger, G., Bentley-Lukschal, A., Singer, J., Achatz,
G., Karagiannis, S. N., & Jensen-Jarolim, E. (2019). AllergoOncology: High
innate IgE levels are decisive for the survival of cancer-bearing mice. World
Allergy Organization Journal. Elsevier. https://doi.org/10.1016/j.waojou.2019.100044'
chicago: 'Singer, Josef, Gertrude Achatz-Straussberger, Anna Bentley-Lukschal, Judit
Singer, Gernot Achatz, Sophia N. Karagiannis, and Erika Jensen-Jarolim. “AllergoOncology:
High Innate IgE Levels Are Decisive for the Survival of Cancer-Bearing Mice.”
World Allergy Organization Journal. Elsevier, 2019. https://doi.org/10.1016/j.waojou.2019.100044.'
ieee: 'J. Singer et al., “AllergoOncology: High innate IgE levels are decisive
for the survival of cancer-bearing mice,” World Allergy Organization Journal,
vol. 12, no. 7. Elsevier, 2019.'
ista: 'Singer J, Achatz-Straussberger G, Bentley-Lukschal A, Singer J, Achatz G,
Karagiannis SN, Jensen-Jarolim E. 2019. AllergoOncology: High innate IgE levels
are decisive for the survival of cancer-bearing mice. World Allergy Organization
Journal. 12(7), 100044.'
mla: 'Singer, Josef, et al. “AllergoOncology: High Innate IgE Levels Are Decisive
for the Survival of Cancer-Bearing Mice.” World Allergy Organization Journal,
vol. 12, no. 7, 100044, Elsevier, 2019, doi:10.1016/j.waojou.2019.100044.'
short: J. Singer, G. Achatz-Straussberger, A. Bentley-Lukschal, J. Singer, G. Achatz,
S.N. Karagiannis, E. Jensen-Jarolim, World Allergy Organization Journal 12 (2019).
date_created: 2020-08-10T11:50:54Z
date_published: 2019-07-29T00:00:00Z
date_updated: 2021-01-12T08:17:36Z
day: '29'
doi: 10.1016/j.waojou.2019.100044
extern: '1'
intvolume: ' 12'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.waojou.2019.100044
month: '07'
oa: 1
oa_version: Published Version
publication: World Allergy Organization Journal
publication_identifier:
issn:
- 1939-4551
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'AllergoOncology: High innate IgE levels are decisive for the survival of cancer-bearing
mice'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2019'
...
---
_id: '8229'
abstract:
- lang: eng
text: Food proteins may get nitrated by various exogenous or endogenous mechanisms.
As individuals might get recurrently exposed to nitrated proteins via daily diet,
we aimed to investigate the effect of repeatedly ingested nitrated food proteins
on the subsequent immune response in non-allergic and allergic mice using the
milk allergen beta-lactoglobulin (BLG) as model food protein in a mouse model.
Evaluating the presence of nitrated proteins in food, we could detect 3-nitrotyrosine
(3-NT) in extracts of different foods and in stomach content extracts of non-allergic
mice under physiological conditions. Chemically nitrated BLG (BLGn) exhibited
enhanced susceptibility to degradation in simulated gastric fluid experiments
compared to untreated BLG (BLGu). Gavage of BLGn to non-allergic animals increased
interferon-γ and interleukin-10 release of stimulated spleen cells and led to
the formation of BLG-specific serum IgA. Allergic mice receiving three oral gavages
of BLGn had higher levels of mouse mast cell protease-1 (mMCP-1) compared to allergic
mice receiving BLGu. Regardless of the preceding immune status, non-allergic or
allergic, repeatedly ingested nitrated food proteins seem to considerably influence
the subsequent immune response.
article_number: '2463'
article_processing_charge: No
article_type: original
author:
- first_name: Anna S.
full_name: Ondracek, Anna S.
last_name: Ondracek
orcid: 0000-0001-7625-3651
- first_name: Denise
full_name: Heiden, Denise
last_name: Heiden
- first_name: Gertie J.
full_name: Oostingh, Gertie J.
last_name: Oostingh
- first_name: Elisabeth
full_name: Fuerst, Elisabeth
last_name: Fuerst
- first_name: Judit
full_name: Fazekas-Singer, Judit
id: 36432834-F248-11E8-B48F-1D18A9856A87
last_name: Fazekas-Singer
orcid: 0000-0002-8777-3502
- first_name: Cornelia
full_name: Bergmayr, Cornelia
last_name: Bergmayr
- first_name: Johanna
full_name: Rohrhofer, Johanna
last_name: Rohrhofer
orcid: 0000-0002-2783-2099
- first_name: Erika
full_name: Jensen-Jarolim, Erika
last_name: Jensen-Jarolim
orcid: 0000-0003-4019-5765
- first_name: Albert
full_name: Duschl, Albert
last_name: Duschl
orcid: 0000-0002-7034-9860
- first_name: Eva
full_name: Untersmayr, Eva
last_name: Untersmayr
orcid: 0000-0002-1963-499X
citation:
ama: Ondracek AS, Heiden D, Oostingh GJ, et al. Immune effects of the nitrated food
allergen beta-lactoglobulin in an experimental food allergy model. Nutrients.
2019;11(10). doi:10.3390/nu11102463
apa: Ondracek, A. S., Heiden, D., Oostingh, G. J., Fuerst, E., Singer, J., Bergmayr,
C., … Untersmayr, E. (2019). Immune effects of the nitrated food allergen beta-lactoglobulin
in an experimental food allergy model. Nutrients. MDPI. https://doi.org/10.3390/nu11102463
chicago: Ondracek, Anna S., Denise Heiden, Gertie J. Oostingh, Elisabeth Fuerst,
Judit Singer, Cornelia Bergmayr, Johanna Rohrhofer, Erika Jensen-Jarolim, Albert
Duschl, and Eva Untersmayr. “Immune Effects of the Nitrated Food Allergen Beta-Lactoglobulin
in an Experimental Food Allergy Model.” Nutrients. MDPI, 2019. https://doi.org/10.3390/nu11102463.
ieee: A. S. Ondracek et al., “Immune effects of the nitrated food allergen
beta-lactoglobulin in an experimental food allergy model,” Nutrients, vol.
11, no. 10. MDPI, 2019.
ista: Ondracek AS, Heiden D, Oostingh GJ, Fuerst E, Singer J, Bergmayr C, Rohrhofer
J, Jensen-Jarolim E, Duschl A, Untersmayr E. 2019. Immune effects of the nitrated
food allergen beta-lactoglobulin in an experimental food allergy model. Nutrients.
11(10), 2463.
mla: Ondracek, Anna S., et al. “Immune Effects of the Nitrated Food Allergen Beta-Lactoglobulin
in an Experimental Food Allergy Model.” Nutrients, vol. 11, no. 10, 2463,
MDPI, 2019, doi:10.3390/nu11102463.
short: A.S. Ondracek, D. Heiden, G.J. Oostingh, E. Fuerst, J. Singer, C. Bergmayr,
J. Rohrhofer, E. Jensen-Jarolim, A. Duschl, E. Untersmayr, Nutrients 11 (2019).
date_created: 2020-08-10T11:51:04Z
date_published: 2019-10-15T00:00:00Z
date_updated: 2021-01-12T08:17:36Z
day: '15'
doi: 10.3390/nu11102463
extern: '1'
intvolume: ' 11'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.3390/nu11102463
month: '10'
oa: 1
oa_version: Published Version
publication: Nutrients
publication_identifier:
issn:
- 2072-6643
publication_status: published
publisher: MDPI
quality_controlled: '1'
status: public
title: Immune effects of the nitrated food allergen beta-lactoglobulin in an experimental
food allergy model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2019'
...
---
_id: '8311'
abstract:
- lang: eng
text: 'One of the core promises of blockchain technology is that of enabling trustworthy
data dissemination in a trustless environment. What current blockchain systems
deliver, however, is slow dissemination of public data, rendering blockchain technology
unusable in settings where latency, transaction capacity, or data confidentiality
are important. In this thesis we focus on providing solutions on two of the most
pressing problems blockchain technology currently faces: scalability and data
confidentiality. To address the scalability issue, we present OMNILEDGER, a novel
scale-out distributed ledger that preserves long-term security under permissionless
operation. It ensures security and correctness by using a bias-resistant public-randomness
protocol for choosing large, statistically representative shards that process
transactions, and by introducing an efficient cross-shard commit protocol that
atomically handles transactions affecting multiple shards. To enable secure sharing
of confidential data we present CALYPSO, the first fully decentralized, auditable
access-control framework for secure blockchain-based data sharing which builds
upon two abstractions. First, on-chain secrets enable collective management of
(verifiably shared) secrets under a Byzantine adversary where an access-control
blockchain enforces user-specific access rules and a secret-management cothority
administers encrypted data. Second, skipchain-based identity and access management
enables efficient administration of dynamic, sovereign identities and access policies
and, in particular, permits clients to maintain long-term relationships with respect
to evolving user identities thanks to the trust-delegating forward links of skipchains.
In order to build OMNILEDGER and CALYPSO, we first build a set of tools for efficient
decentralization, which are presented in Part II of this dissertation. These tools
can be used in decentralized and distributed systems to achieve (1) scalable consensus
(BYZCOIN), (2) bias- resistant distributed randomness creations (RANDHOUND), and
(3) relationship-keeping between independently updating communication endpoints
(SKIPCHAINIAC). Although we use this tools in the scope off this thesis, they
can be (and already have been) used in a far wider scope.'
article_processing_charge: No
author:
- first_name: Eleftherios
full_name: Kokoris Kogias, Eleftherios
id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
last_name: Kokoris Kogias
citation:
ama: Kokoris Kogias E. Secure, confidential blockchains providing high throughput
and low latency. 2019. doi:10.5075/epfl-thesis-7101
apa: Kokoris Kogias, E. (2019). Secure, confidential blockchains providing high
throughput and low latency. École Polytechnique Fédérale de Lausanne. https://doi.org/10.5075/epfl-thesis-7101
chicago: Kokoris Kogias, Eleftherios. “Secure, Confidential Blockchains Providing
High Throughput and Low Latency.” École Polytechnique Fédérale de Lausanne, 2019.
https://doi.org/10.5075/epfl-thesis-7101.
ieee: E. Kokoris Kogias, “Secure, confidential blockchains providing high throughput
and low latency,” École Polytechnique Fédérale de Lausanne, 2019.
ista: Kokoris Kogias E. 2019. Secure, confidential blockchains providing high throughput
and low latency. École Polytechnique Fédérale de Lausanne.
mla: Kokoris Kogias, Eleftherios. Secure, Confidential Blockchains Providing
High Throughput and Low Latency. École Polytechnique Fédérale de Lausanne,
2019, doi:10.5075/epfl-thesis-7101.
short: E. Kokoris Kogias, Secure, Confidential Blockchains Providing High Throughput
and Low Latency, École Polytechnique Fédérale de Lausanne, 2019.
date_created: 2020-08-27T11:22:24Z
date_published: 2019-09-27T00:00:00Z
date_updated: 2021-12-20T15:30:47Z
day: '27'
degree_awarded: PhD
doi: 10.5075/epfl-thesis-7101
extern: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.doi.org/10.5075/epfl-thesis-7101
month: '09'
oa: 1
oa_version: Published Version
page: '244'
publication_status: published
publisher: École Polytechnique Fédérale de Lausanne
status: public
supervisor:
- first_name: Bryan Alexander
full_name: Ford, Bryan Alexander
last_name: Ford
title: Secure, confidential blockchains providing high throughput and low latency
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2019'
...
---
_id: '8418'
abstract:
- lang: eng
text: For the Restricted Circular Planar 3 Body Problem, we show that there exists
an open set U in phase space of fixed measure, where the set of initial points
which lead to collision is O(μ120) dense as μ→0.
article_processing_charge: No
article_type: original
author:
- first_name: Marcel
full_name: Guardia, Marcel
last_name: Guardia
- first_name: Vadim
full_name: Kaloshin, Vadim
id: FE553552-CDE8-11E9-B324-C0EBE5697425
last_name: Kaloshin
orcid: 0000-0002-6051-2628
- first_name: Jianlu
full_name: Zhang, Jianlu
last_name: Zhang
citation:
ama: Guardia M, Kaloshin V, Zhang J. Asymptotic density of collision orbits in the
Restricted Circular Planar 3 Body Problem. Archive for Rational Mechanics and
Analysis. 2019;233(2):799-836. doi:10.1007/s00205-019-01368-7
apa: Guardia, M., Kaloshin, V., & Zhang, J. (2019). Asymptotic density of collision
orbits in the Restricted Circular Planar 3 Body Problem. Archive for Rational
Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-019-01368-7
chicago: Guardia, Marcel, Vadim Kaloshin, and Jianlu Zhang. “Asymptotic Density
of Collision Orbits in the Restricted Circular Planar 3 Body Problem.” Archive
for Rational Mechanics and Analysis. Springer Nature, 2019. https://doi.org/10.1007/s00205-019-01368-7.
ieee: M. Guardia, V. Kaloshin, and J. Zhang, “Asymptotic density of collision orbits
in the Restricted Circular Planar 3 Body Problem,” Archive for Rational Mechanics
and Analysis, vol. 233, no. 2. Springer Nature, pp. 799–836, 2019.
ista: Guardia M, Kaloshin V, Zhang J. 2019. Asymptotic density of collision orbits
in the Restricted Circular Planar 3 Body Problem. Archive for Rational Mechanics
and Analysis. 233(2), 799–836.
mla: Guardia, Marcel, et al. “Asymptotic Density of Collision Orbits in the Restricted
Circular Planar 3 Body Problem.” Archive for Rational Mechanics and Analysis,
vol. 233, no. 2, Springer Nature, 2019, pp. 799–836, doi:10.1007/s00205-019-01368-7.
short: M. Guardia, V. Kaloshin, J. Zhang, Archive for Rational Mechanics and Analysis
233 (2019) 799–836.
date_created: 2020-09-17T10:41:51Z
date_published: 2019-03-12T00:00:00Z
date_updated: 2021-01-12T08:19:09Z
day: '12'
doi: 10.1007/s00205-019-01368-7
extern: '1'
intvolume: ' 233'
issue: '2'
keyword:
- Mechanical Engineering
- Mathematics (miscellaneous)
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1007/s00205-019-01368-7
month: '03'
oa: 1
oa_version: Published Version
page: 799-836
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
issn:
- 0003-9527
- 1432-0673
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Asymptotic density of collision orbits in the Restricted Circular Planar 3
Body Problem
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 233
year: '2019'
...
---
_id: '9018'
abstract:
- lang: eng
text: Anti-silencing function 1 (ASF1) is a conserved H3-H4 histone chaperone involved
in histone dynamics during replication, transcription, and DNA repair. Overexpressed
in proliferating tissues including many tumors, ASF1 has emerged as a promising
therapeutic target. Here, we combine structural, computational, and biochemical
approaches to design peptides that inhibit the ASF1-histone interaction. Starting
from the structure of the human ASF1-histone complex, we developed a rational
design strategy combining epitope tethering and optimization of interface contacts
to identify a potent peptide inhibitor with a dissociation constant of 3 nM. When
introduced into cultured cells, the inhibitors impair cell proliferation, perturb
cell-cycle progression, and reduce cell migration and invasion in a manner commensurate
with their affinity for ASF1. Finally, we find that direct injection of the most
potent ASF1 peptide inhibitor in mouse allografts reduces tumor growth. Our results
open new avenues to use ASF1 inhibitors as promising leads for cancer therapy.
article_processing_charge: No
article_type: original
author:
- first_name: May M
full_name: Bakail, May M
id: FB3C3F8E-522F-11EA-B186-22963DDC885E
last_name: Bakail
orcid: 0000-0002-9592-1587
- first_name: Albane
full_name: Gaubert, Albane
last_name: Gaubert
- first_name: Jessica
full_name: Andreani, Jessica
last_name: Andreani
- first_name: Gwenaëlle
full_name: Moal, Gwenaëlle
last_name: Moal
- first_name: Guillaume
full_name: Pinna, Guillaume
last_name: Pinna
- first_name: Ekaterina
full_name: Boyarchuk, Ekaterina
last_name: Boyarchuk
- first_name: Marie-Cécile
full_name: Gaillard, Marie-Cécile
last_name: Gaillard
- first_name: Regis
full_name: Courbeyrette, Regis
last_name: Courbeyrette
- first_name: Carl
full_name: Mann, Carl
last_name: Mann
- first_name: Jean-Yves
full_name: Thuret, Jean-Yves
last_name: Thuret
- first_name: Bérengère
full_name: Guichard, Bérengère
last_name: Guichard
- first_name: Brice
full_name: Murciano, Brice
last_name: Murciano
- first_name: Nicolas
full_name: Richet, Nicolas
last_name: Richet
- first_name: Adeline
full_name: Poitou, Adeline
last_name: Poitou
- first_name: Claire
full_name: Frederic, Claire
last_name: Frederic
- first_name: Marie-Hélène
full_name: Le Du, Marie-Hélène
last_name: Le Du
- first_name: Morgane
full_name: Agez, Morgane
last_name: Agez
- first_name: Caroline
full_name: Roelants, Caroline
last_name: Roelants
- first_name: Zachary A.
full_name: Gurard-Levin, Zachary A.
last_name: Gurard-Levin
- first_name: Geneviève
full_name: Almouzni, Geneviève
last_name: Almouzni
- first_name: Nadia
full_name: Cherradi, Nadia
last_name: Cherradi
- first_name: Raphael
full_name: Guerois, Raphael
last_name: Guerois
- first_name: Françoise
full_name: Ochsenbein, Françoise
last_name: Ochsenbein
citation:
ama: Bakail MM, Gaubert A, Andreani J, et al. Design on a rational basis of high-affinity
peptides inhibiting the histone chaperone ASF1. Cell Chemical Biology.
2019;26(11):1573-1585.e10. doi:10.1016/j.chembiol.2019.09.002
apa: Bakail, M. M., Gaubert, A., Andreani, J., Moal, G., Pinna, G., Boyarchuk, E.,
… Ochsenbein, F. (2019). Design on a rational basis of high-affinity peptides
inhibiting the histone chaperone ASF1. Cell Chemical Biology. Elsevier.
https://doi.org/10.1016/j.chembiol.2019.09.002
chicago: Bakail, May M, Albane Gaubert, Jessica Andreani, Gwenaëlle Moal, Guillaume
Pinna, Ekaterina Boyarchuk, Marie-Cécile Gaillard, et al. “Design on a Rational
Basis of High-Affinity Peptides Inhibiting the Histone Chaperone ASF1.” Cell
Chemical Biology. Elsevier, 2019. https://doi.org/10.1016/j.chembiol.2019.09.002.
ieee: M. M. Bakail et al., “Design on a rational basis of high-affinity peptides
inhibiting the histone chaperone ASF1,” Cell Chemical Biology, vol. 26,
no. 11. Elsevier, p. 1573–1585.e10, 2019.
ista: Bakail MM, Gaubert A, Andreani J, Moal G, Pinna G, Boyarchuk E, Gaillard M-C,
Courbeyrette R, Mann C, Thuret J-Y, Guichard B, Murciano B, Richet N, Poitou A,
Frederic C, Le Du M-H, Agez M, Roelants C, Gurard-Levin ZA, Almouzni G, Cherradi
N, Guerois R, Ochsenbein F. 2019. Design on a rational basis of high-affinity
peptides inhibiting the histone chaperone ASF1. Cell Chemical Biology. 26(11),
1573–1585.e10.
mla: Bakail, May M., et al. “Design on a Rational Basis of High-Affinity Peptides
Inhibiting the Histone Chaperone ASF1.” Cell Chemical Biology, vol. 26,
no. 11, Elsevier, 2019, p. 1573–1585.e10, doi:10.1016/j.chembiol.2019.09.002.
short: M.M. Bakail, A. Gaubert, J. Andreani, G. Moal, G. Pinna, E. Boyarchuk, M.-C.
Gaillard, R. Courbeyrette, C. Mann, J.-Y. Thuret, B. Guichard, B. Murciano, N.
Richet, A. Poitou, C. Frederic, M.-H. Le Du, M. Agez, C. Roelants, Z.A. Gurard-Levin,
G. Almouzni, N. Cherradi, R. Guerois, F. Ochsenbein, Cell Chemical Biology 26
(2019) 1573–1585.e10.
date_created: 2021-01-19T11:04:50Z
date_published: 2019-11-21T00:00:00Z
date_updated: 2023-02-23T13:46:53Z
day: '21'
doi: 10.1016/j.chembiol.2019.09.002
extern: '1'
external_id:
pmid:
- '31543461'
intvolume: ' 26'
issue: '11'
keyword:
- Clinical Biochemistry
- Molecular Medicine
- Biochemistry
- Molecular Biology
- Pharmacology
- Drug Discovery
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.chembiol.2019.09.002
month: '11'
oa: 1
oa_version: Published Version
page: 1573-1585.e10
pmid: 1
publication: Cell Chemical Biology
publication_identifier:
issn:
- 2451-9456
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Design on a rational basis of high-affinity peptides inhibiting the histone
chaperone ASF1
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2019'
...