---
_id: '9580'
abstract:
- lang: eng
  text: An r-cut of a k-uniform hypergraph H is a partition of the vertex set of H
    into r parts and the size of the cut is the number of edges which have a vertex
    in each part. A classical result of Edwards says that every m-edge graph has a
    2-cut of size m/2+Ω)(m−−√) and this is best possible. That is, there exist cuts
    which exceed the expected size of a random cut by some multiple of the standard
    deviation. We study analogues of this and related results in hypergraphs. First,
    we observe that similarly to graphs, every m-edge k-uniform hypergraph has an
    r-cut whose size is Ω(m−−√) larger than the expected size of a random r-cut. Moreover,
    in the case where k = 3 and r = 2 this bound is best possible and is attained
    by Steiner triple systems. Surprisingly, for all other cases (that is, if k ≥
    4 or r ≥ 3), we show that every m-edge k-uniform hypergraph has an r-cut whose
    size is Ω(m5/9) larger than the expected size of a random r-cut. This is a significant
    difference in behaviour, since the amount by which the size of the largest cut
    exceeds the expected size of a random cut is now considerably larger than the
    standard deviation.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: David
  full_name: Conlon, David
  last_name: Conlon
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: Matthew Alan
  full_name: Kwan, Matthew Alan
  id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
  last_name: Kwan
  orcid: 0000-0002-4003-7567
- first_name: Benny
  full_name: Sudakov, Benny
  last_name: Sudakov
citation:
  ama: Conlon D, Fox J, Kwan MA, Sudakov B. Hypergraph cuts above the average. <i>Israel
    Journal of Mathematics</i>. 2019;233(1):67-111. doi:<a href="https://doi.org/10.1007/s11856-019-1897-z">10.1007/s11856-019-1897-z</a>
  apa: Conlon, D., Fox, J., Kwan, M. A., &#38; Sudakov, B. (2019). Hypergraph cuts
    above the average. <i>Israel Journal of Mathematics</i>. Springer. <a href="https://doi.org/10.1007/s11856-019-1897-z">https://doi.org/10.1007/s11856-019-1897-z</a>
  chicago: Conlon, David, Jacob Fox, Matthew Alan Kwan, and Benny Sudakov. “Hypergraph
    Cuts above the Average.” <i>Israel Journal of Mathematics</i>. Springer, 2019.
    <a href="https://doi.org/10.1007/s11856-019-1897-z">https://doi.org/10.1007/s11856-019-1897-z</a>.
  ieee: D. Conlon, J. Fox, M. A. Kwan, and B. Sudakov, “Hypergraph cuts above the
    average,” <i>Israel Journal of Mathematics</i>, vol. 233, no. 1. Springer, pp.
    67–111, 2019.
  ista: Conlon D, Fox J, Kwan MA, Sudakov B. 2019. Hypergraph cuts above the average.
    Israel Journal of Mathematics. 233(1), 67–111.
  mla: Conlon, David, et al. “Hypergraph Cuts above the Average.” <i>Israel Journal
    of Mathematics</i>, vol. 233, no. 1, Springer, 2019, pp. 67–111, doi:<a href="https://doi.org/10.1007/s11856-019-1897-z">10.1007/s11856-019-1897-z</a>.
  short: D. Conlon, J. Fox, M.A. Kwan, B. Sudakov, Israel Journal of Mathematics 233
    (2019) 67–111.
date_created: 2021-06-21T13:36:02Z
date_published: 2019-08-01T00:00:00Z
date_updated: 2023-02-23T14:01:41Z
day: '01'
doi: 10.1007/s11856-019-1897-z
extern: '1'
external_id:
  arxiv:
  - '1803.08462'
intvolume: '       233'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1803.08462
month: '08'
oa: 1
oa_version: Preprint
page: 67-111
publication: Israel Journal of Mathematics
publication_identifier:
  eissn:
  - 1565-8511
  issn:
  - 0021-2172
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hypergraph cuts above the average
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 233
year: '2019'
...
---
_id: '9806'
abstract:
- lang: eng
  text: 1. Hosts can alter their strategy towards pathogens during their lifetime,
    i.e., they can show phenotypic plasticity in immunity or life history. Immune
    priming is one such example, where a previous encounter with a pathogen confers
    enhanced protection upon secondary challenge, resulting in reduced pathogen load
    (i.e. resistance) and improved host survival. However, an initial encounter might
    also enhance tolerance, particularly to less virulent opportunistic pathogens
    that establish persistent infections. In this scenario, individuals are better
    able to reduce the negative fitness consequences that result from a high pathogen
    load. Finally, previous exposure may also lead to life history adjustments, such
    as terminal investment into reproduction. 2. Using different Drosophila melanogaster
    host genotypes and two bacterial pathogens, Lactococcus lactis and Pseudomonas
    entomophila, we tested if previous exposure results in resistance or tolerance
    and whether it modifies immune gene expression during an acute-phase infection
    (one day post-challenge). We then asked if previous pathogen exposure affects
    chronic-phase pathogen persistence and longer-term survival (28 days post-challenge).
    3. We predicted that previous exposure would increase host resistance to an early
    stage bacterial infection while it might come at a cost to host fecundity tolerance.
    We reasoned that resistance would be due in part to stronger immune gene expression
    after challenge. We expected that previous exposure would improve long-term survival,
    that it would reduce infection persistence, and we expected to find genetic variation
    in these responses. 4. We found that previous exposure to P. entomophila weakened
    host resistance to a second infection independent of genotype and had no effect
    on immune gene expression. Fecundity tolerance showed genotypic variation but
    was not influenced by previous exposure. However, L. lactis persisted as a chronic
    infection, whereas survivors cleared the more pathogenic P. entomophila infection.
    5. To our knowledge, this is the first study that addresses host tolerance to
    bacteria in relation to previous exposure, taking a multi-faceted approach to
    address the topic. Our results suggest that previous exposure comes with transient
    costs to resistance during the early stage of infection in this host-pathogen
    system and that infection persistence may be bacterium-specific.
article_processing_charge: No
author:
- first_name: Megan
  full_name: Kutzer, Megan
  id: 29D0B332-F248-11E8-B48F-1D18A9856A87
  last_name: Kutzer
  orcid: 0000-0002-8696-6978
- first_name: Joachim
  full_name: Kurtz, Joachim
  last_name: Kurtz
- first_name: Sophie A.O.
  full_name: Armitage, Sophie A.O.
  last_name: Armitage
citation:
  ama: 'Kutzer M, Kurtz J, Armitage SAO. Data from: A multi-faceted approach testing
    the effects of previous bacterial exposure on resistance and tolerance. 2019.
    doi:<a href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>'
  apa: 'Kutzer, M., Kurtz, J., &#38; Armitage, S. A. O. (2019). Data from: A multi-faceted
    approach testing the effects of previous bacterial exposure on resistance and
    tolerance. Dryad. <a href="https://doi.org/10.5061/dryad.9kj41f0">https://doi.org/10.5061/dryad.9kj41f0</a>'
  chicago: 'Kutzer, Megan, Joachim Kurtz, and Sophie A.O. Armitage. “Data from: A
    Multi-Faceted Approach Testing the Effects of Previous Bacterial Exposure on Resistance
    and Tolerance.” Dryad, 2019. <a href="https://doi.org/10.5061/dryad.9kj41f0">https://doi.org/10.5061/dryad.9kj41f0</a>.'
  ieee: 'M. Kutzer, J. Kurtz, and S. A. O. Armitage, “Data from: A multi-faceted approach
    testing the effects of previous bacterial exposure on resistance and tolerance.”
    Dryad, 2019.'
  ista: 'Kutzer M, Kurtz J, Armitage SAO. 2019. Data from: A multi-faceted approach
    testing the effects of previous bacterial exposure on resistance and tolerance,
    Dryad, <a href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>.'
  mla: 'Kutzer, Megan, et al. <i>Data from: A Multi-Faceted Approach Testing the Effects
    of Previous Bacterial Exposure on Resistance and Tolerance</i>. Dryad, 2019, doi:<a
    href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>.'
  short: M. Kutzer, J. Kurtz, S.A.O. Armitage, (2019).
date_created: 2021-08-06T12:06:40Z
date_published: 2019-02-05T00:00:00Z
date_updated: 2025-07-10T11:53:11Z
day: '05'
department:
- _id: SyCr
doi: 10.5061/dryad.9kj41f0
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.9kj41f0
month: '02'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '6105'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: A multi-faceted approach testing the effects of previous bacterial
  exposure on resistance and tolerance'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '6428'
abstract:
- lang: eng
  text: 'Safety and security are major concerns in the development of Cyber-Physical
    Systems (CPS). Signal temporal logic (STL) was proposedas a language to specify
    and monitor the correctness of CPS relativeto formalized requirements. Incorporating
    STL into a developmentprocess enables designers to automatically monitor and diagnosetraces,
    compute robustness estimates based on requirements, andperform requirement falsification,
    leading to productivity gains inverification and validation activities; however,
    in its current formSTL is agnostic to the input/output classification of signals,
    andthis negatively impacts the relevance of the analysis results.In this paper
    we propose to make the interface explicit in theSTL language by introducing input/output
    signal declarations. Wethen define new measures of input vacuity and output robustnessthat
    better reflect the nature of the system and the specification in-tent. The resulting
    framework, which we call interface-aware signaltemporal logic (IA-STL), aids verification
    and validation activities.We demonstrate the benefits of IA-STL on several CPS
    analysisactivities: (1) robustness-driven sensitivity analysis, (2) falsificationand
    (3) fault localization. We describe an implementation of our en-hancement to STL
    and associated notions of robustness and vacuityin a prototype extension of Breach,
    a MATLAB®/Simulink®toolboxfor CPS verification and validation. We explore these
    methodologi-cal improvements and evaluate our results on two examples fromthe
    automotive domain: a benchmark powertrain control systemand a hydrogen fuel cell
    system.'
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Ferrere, Thomas
  id: 40960E6E-F248-11E8-B48F-1D18A9856A87
  last_name: Ferrere
  orcid: 0000-0001-5199-3143
- first_name: Dejan
  full_name: Nickovic, Dejan
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
- first_name: Alexandre
  full_name: Donzé, Alexandre
  last_name: Donzé
- first_name: Hisahiro
  full_name: Ito, Hisahiro
  last_name: Ito
- first_name: James
  full_name: Kapinski, James
  last_name: Kapinski
citation:
  ama: 'Ferrere T, Nickovic D, Donzé A, Ito H, Kapinski J. Interface-aware signal
    temporal logic. In: <i>Proceedings of the 2019 22nd ACM International Conference
    on Hybrid Systems: Computation and Control</i>. ACM; 2019:57-66. doi:<a href="https://doi.org/10.1145/3302504.3311800">10.1145/3302504.3311800</a>'
  apa: 'Ferrere, T., Nickovic, D., Donzé, A., Ito, H., &#38; Kapinski, J. (2019).
    Interface-aware signal temporal logic. In <i>Proceedings of the 2019 22nd ACM
    International Conference on Hybrid Systems: Computation and Control</i> (pp. 57–66).
    Montreal, Canada: ACM. <a href="https://doi.org/10.1145/3302504.3311800">https://doi.org/10.1145/3302504.3311800</a>'
  chicago: 'Ferrere, Thomas, Dejan Nickovic, Alexandre Donzé, Hisahiro Ito, and James
    Kapinski. “Interface-Aware Signal Temporal Logic.” In <i>Proceedings of the 2019
    22nd ACM International Conference on Hybrid Systems: Computation and Control</i>,
    57–66. ACM, 2019. <a href="https://doi.org/10.1145/3302504.3311800">https://doi.org/10.1145/3302504.3311800</a>.'
  ieee: 'T. Ferrere, D. Nickovic, A. Donzé, H. Ito, and J. Kapinski, “Interface-aware
    signal temporal logic,” in <i>Proceedings of the 2019 22nd ACM International Conference
    on Hybrid Systems: Computation and Control</i>, Montreal, Canada, 2019, pp. 57–66.'
  ista: 'Ferrere T, Nickovic D, Donzé A, Ito H, Kapinski J. 2019. Interface-aware
    signal temporal logic. Proceedings of the 2019 22nd ACM International Conference
    on Hybrid Systems: Computation and Control. HSCC: Hybrid Systems - Computation
    and Control, 57–66.'
  mla: 'Ferrere, Thomas, et al. “Interface-Aware Signal Temporal Logic.” <i>Proceedings
    of the 2019 22nd ACM International Conference on Hybrid Systems: Computation and
    Control</i>, ACM, 2019, pp. 57–66, doi:<a href="https://doi.org/10.1145/3302504.3311800">10.1145/3302504.3311800</a>.'
  short: 'T. Ferrere, D. Nickovic, A. Donzé, H. Ito, J. Kapinski, in:, Proceedings
    of the 2019 22nd ACM International Conference on Hybrid Systems: Computation and
    Control, ACM, 2019, pp. 57–66.'
conference:
  end_date: 2019-04-18
  location: Montreal, Canada
  name: 'HSCC: Hybrid Systems - Computation and Control'
  start_date: 2019-04-16
date_created: 2019-05-13T08:13:46Z
date_published: 2019-04-16T00:00:00Z
date_updated: 2025-07-10T11:53:22Z
day: '16'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1145/3302504.3311800
external_id:
  isi:
  - '000516713900007'
file:
- access_level: open_access
  checksum: b8e967081e051d1c55ca5d18fb187890
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-08T17:25:45Z
  date_updated: 2020-10-08T17:25:45Z
  file_id: '8633'
  file_name: 2019_ACM_Ferrere.pdf
  file_size: 1055421
  relation: main_file
  success: 1
file_date_updated: 2020-10-08T17:25:45Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 57-66
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
publication: 'Proceedings of the 2019 22nd ACM International Conference on Hybrid
  Systems: Computation and Control'
publication_identifier:
  isbn:
  - '9781450362825'
publication_status: published
publisher: ACM
quality_controlled: '1'
scopus_import: '1'
status: public
title: Interface-aware signal temporal logic
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '6430'
abstract:
- lang: eng
  text: "A proxy re-encryption (PRE) scheme is a public-key encryption scheme that
    allows the holder of a key pk to derive a re-encryption key for any other key
    \U0001D45D\U0001D458′. This re-encryption key lets anyone transform ciphertexts
    under pk into ciphertexts under \U0001D45D\U0001D458′ without having to know the
    underlying message, while transformations from \U0001D45D\U0001D458′ to pk should
    not be possible (unidirectional). Security is defined in a multi-user setting
    against an adversary that gets the users’ public keys and can ask for re-encryption
    keys and can corrupt users by requesting their secret keys. Any ciphertext that
    the adversary cannot trivially decrypt given the obtained secret and re-encryption
    keys should be secure.\r\n\r\nAll existing security proofs for PRE only show selective
    security, where the adversary must first declare the users it wants to corrupt.
    This can be lifted to more meaningful adaptive security by guessing the set of
    corrupted users among the n users, which loses a factor exponential in  Open image
    in new window , rendering the result meaningless already for moderate Open image
    in new window .\r\n\r\nJafargholi et al. (CRYPTO’17) proposed a framework that
    in some cases allows to give adaptive security proofs for schemes which were previously
    only known to be selectively secure, while avoiding the exponential loss that
    results from guessing the adaptive choices made by an adversary. We apply their
    framework to PREs that satisfy some natural additional properties. Concretely,
    we give a more fine-grained reduction for several unidirectional PREs, proving
    adaptive security at a much smaller loss. The loss depends on the graph of users
    whose edges represent the re-encryption keys queried by the adversary. For trees
    and chains the loss is quasi-polynomial in the size and for general graphs it
    is exponential in their depth and indegree (instead of their size as for previous
    reductions). Fortunately, trees and low-depth graphs cover many, if not most,
    interesting applications.\r\n\r\nOur results apply e.g. to the bilinear-map based
    PRE schemes by Ateniese et al. (NDSS’05 and CT-RSA’09), Gentry’s FHE-based scheme
    (STOC’09) and the LWE-based scheme by Chandran et al. (PKC’14)."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Georg
  full_name: Fuchsbauer, Georg
  id: 46B4C3EE-F248-11E8-B48F-1D18A9856A87
  last_name: Fuchsbauer
- first_name: Chethan
  full_name: Kamath Hosdurg, Chethan
  id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87
  last_name: Kamath Hosdurg
  orcid: 0009-0006-6812-7317
- first_name: Karen
  full_name: Klein, Karen
  id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87
  last_name: Klein
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: 'Fuchsbauer G, Kamath Hosdurg C, Klein K, Pietrzak KZ. Adaptively secure proxy
    re-encryption. In: Vol 11443. Springer Nature; 2019:317-346. doi:<a href="https://doi.org/10.1007/978-3-030-17259-6_11">10.1007/978-3-030-17259-6_11</a>'
  apa: 'Fuchsbauer, G., Kamath Hosdurg, C., Klein, K., &#38; Pietrzak, K. Z. (2019).
    Adaptively secure proxy re-encryption (Vol. 11443, pp. 317–346). Presented at
    the PKC: Public-Key Cryptograhy, Beijing, China: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-17259-6_11">https://doi.org/10.1007/978-3-030-17259-6_11</a>'
  chicago: Fuchsbauer, Georg, Chethan Kamath Hosdurg, Karen Klein, and Krzysztof Z
    Pietrzak. “Adaptively Secure Proxy Re-Encryption,” 11443:317–46. Springer Nature,
    2019. <a href="https://doi.org/10.1007/978-3-030-17259-6_11">https://doi.org/10.1007/978-3-030-17259-6_11</a>.
  ieee: 'G. Fuchsbauer, C. Kamath Hosdurg, K. Klein, and K. Z. Pietrzak, “Adaptively
    secure proxy re-encryption,” presented at the PKC: Public-Key Cryptograhy, Beijing,
    China, 2019, vol. 11443, pp. 317–346.'
  ista: 'Fuchsbauer G, Kamath Hosdurg C, Klein K, Pietrzak KZ. 2019. Adaptively secure
    proxy re-encryption. PKC: Public-Key Cryptograhy, LNCS, vol. 11443, 317–346.'
  mla: Fuchsbauer, Georg, et al. <i>Adaptively Secure Proxy Re-Encryption</i>. Vol.
    11443, Springer Nature, 2019, pp. 317–46, doi:<a href="https://doi.org/10.1007/978-3-030-17259-6_11">10.1007/978-3-030-17259-6_11</a>.
  short: G. Fuchsbauer, C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, in:, Springer
    Nature, 2019, pp. 317–346.
conference:
  end_date: 2019-04-17
  location: Beijing, China
  name: 'PKC: Public-Key Cryptograhy'
  start_date: 2019-04-14
date_created: 2019-05-13T08:13:46Z
date_published: 2019-04-06T00:00:00Z
date_updated: 2026-04-16T09:52:04Z
day: '06'
department:
- _id: KrPi
doi: 10.1007/978-3-030-17259-6_11
ec_funded: 1
external_id:
  isi:
  - '001299215500011'
intvolume: '     11443'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2018/426
month: '04'
oa: 1
oa_version: Preprint
page: 317-346
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '682815'
  name: Teaching Old Crypto New Tricks
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030172589'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '10035'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Adaptively secure proxy re-encryption
type: conference
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 11443
year: '2019'
...
---
_id: '6462'
abstract:
- lang: eng
  text: A controller is a device that interacts with a plant. At each time point,it
    reads the plant’s state and issues commands with the goal that the plant oper-ates
    optimally. Constructing optimal controllers is a fundamental and challengingproblem.
    Machine learning techniques have recently been successfully applied totrain controllers,
    yet they have limitations. Learned controllers are monolithic andhard to reason
    about. In particular, it is difficult to add features without retraining,to guarantee
    any level of performance, and to achieve acceptable performancewhen encountering
    untrained scenarios. These limitations can be addressed bydeploying quantitative
    run-timeshieldsthat serve as a proxy for the controller.At each time point, the
    shield reads the command issued by the controller andmay choose to alter it before
    passing it on to the plant. We show how optimalshields that interfere as little
    as possible while guaranteeing a desired level ofcontroller performance, can be
    generated systematically and automatically usingreactive  synthesis.  First,  we  abstract  the  plant  by  building  a  stochastic  model.Second,
    we consider the learned controller to be a black box. Third, we mea-surecontroller
    performanceandshield interferenceby two quantitative run-timemeasures that are
    formally defined using weighted automata. Then, the problemof constructing a shield
    that guarantees maximal performance with minimal inter-ference is the problem
    of finding an optimal strategy in a stochastic2-player game“controller versus
    shield” played on the abstract state space of the plant with aquantitative objective
    obtained from combining the performance and interferencemeasures. We illustrate
    the effectiveness of our approach by automatically con-structing lightweight shields
    for learned traffic-light controllers in various roadnetworks. The shields we
    generate avoid liveness bugs, improve controller per-formance in untrained and
    changing traffic situations, and add features to learnedcontrollers, such as giving
    priority to emergency vehicles.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Guy
  full_name: Avni, Guy
  id: 463C8BC2-F248-11E8-B48F-1D18A9856A87
  last_name: Avni
  orcid: 0000-0001-5588-8287
- first_name: Roderick
  full_name: Bloem, Roderick
  last_name: Bloem
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Bettina
  full_name: Konighofer, Bettina
  last_name: Konighofer
- first_name: Stefan
  full_name: Pranger, Stefan
  last_name: Pranger
citation:
  ama: 'Avni G, Bloem R, Chatterjee K, Henzinger TA, Konighofer B, Pranger S. Run-time
    optimization for learned controllers through quantitative games. In: <i>31st International
    Conference on Computer-Aided Verification</i>. Vol 11561. Springer; 2019:630-649.
    doi:<a href="https://doi.org/10.1007/978-3-030-25540-4_36">10.1007/978-3-030-25540-4_36</a>'
  apa: 'Avni, G., Bloem, R., Chatterjee, K., Henzinger, T. A., Konighofer, B., &#38;
    Pranger, S. (2019). Run-time optimization for learned controllers through quantitative
    games. In <i>31st International Conference on Computer-Aided Verification</i>
    (Vol. 11561, pp. 630–649). New York, NY, United States: Springer. <a href="https://doi.org/10.1007/978-3-030-25540-4_36">https://doi.org/10.1007/978-3-030-25540-4_36</a>'
  chicago: Avni, Guy, Roderick Bloem, Krishnendu Chatterjee, Thomas A Henzinger, Bettina
    Konighofer, and Stefan Pranger. “Run-Time Optimization for Learned Controllers
    through Quantitative Games.” In <i>31st International Conference on Computer-Aided
    Verification</i>, 11561:630–49. Springer, 2019. <a href="https://doi.org/10.1007/978-3-030-25540-4_36">https://doi.org/10.1007/978-3-030-25540-4_36</a>.
  ieee: G. Avni, R. Bloem, K. Chatterjee, T. A. Henzinger, B. Konighofer, and S. Pranger,
    “Run-time optimization for learned controllers through quantitative games,” in
    <i>31st International Conference on Computer-Aided Verification</i>, New York,
    NY, United States, 2019, vol. 11561, pp. 630–649.
  ista: 'Avni G, Bloem R, Chatterjee K, Henzinger TA, Konighofer B, Pranger S. 2019.
    Run-time optimization for learned controllers through quantitative games. 31st
    International Conference on Computer-Aided Verification. CAV: Computer Aided Verification,
    LNCS, vol. 11561, 630–649.'
  mla: Avni, Guy, et al. “Run-Time Optimization for Learned Controllers through Quantitative
    Games.” <i>31st International Conference on Computer-Aided Verification</i>, vol.
    11561, Springer, 2019, pp. 630–49, doi:<a href="https://doi.org/10.1007/978-3-030-25540-4_36">10.1007/978-3-030-25540-4_36</a>.
  short: G. Avni, R. Bloem, K. Chatterjee, T.A. Henzinger, B. Konighofer, S. Pranger,
    in:, 31st International Conference on Computer-Aided Verification, Springer, 2019,
    pp. 630–649.
conference:
  end_date: 2019-07-18
  location: New York, NY, United States
  name: 'CAV: Computer Aided Verification'
  start_date: 2019-07-13
corr_author: '1'
date_created: 2019-05-16T11:22:30Z
date_published: 2019-07-12T00:00:00Z
date_updated: 2025-04-15T06:26:05Z
day: '12'
ddc:
- '000'
department:
- _id: ToHe
- _id: KrCh
doi: 10.1007/978-3-030-25540-4_36
external_id:
  isi:
  - '000491468000036'
file:
- access_level: open_access
  checksum: c231579f2485c6fd4df17c9443a4d80b
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-14T09:35:24Z
  date_updated: 2020-07-14T12:47:31Z
  file_id: '6816'
  file_name: 2019_CAV_Avni.pdf
  file_size: 659766
  relation: main_file
file_date_updated: 2020-07-14T12:47:31Z
has_accepted_license: '1'
intvolume: '     11561'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 630-649
project:
- _id: 264B3912-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02369
  name: Formal Methods meets Algorithmic Game Theory
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: 31st International Conference on Computer-Aided Verification
publication_identifier:
  isbn:
  - '9783030255398'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Run-time optimization for learned controllers through quantitative games
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11561
year: '2019'
...
---
OA_place: publisher
_id: '6473'
abstract:
- lang: eng
  text: "Single cells are constantly interacting with their environment and each other,
    more importantly, the accurate perception of environmental cues is crucial for
    growth, survival, and reproduction. This communication between cells and their
    environment can be formalized in mathematical terms and be quantified as the information
    flow between them, as prescribed by information theory. \r\nThe recent availability
    of real–time dynamical patterns of signaling molecules in single cells has allowed
    us to identify encoding about the identity of the environment in the time–series.
    However, efficient estimation of the information transmitted by these signals
    has been a data–analysis challenge due to the high dimensionality of the trajectories
    and the limited number of samples. In the first part of this thesis, we develop
    and evaluate decoding–based estimation methods to lower bound the mutual information
    and derive model–based precise information estimates for biological reaction networks
    governed by the chemical master equation. This is followed by applying the decoding-based
    methods to study the intracellular representation of extracellular changes in
    budding yeast, by observing the transient dynamics of nuclear translocation of
    10 transcription factors in response to 3 stress conditions. Additionally, we
    apply these estimators to previously published data on ERK and Ca2+ signaling
    and yeast stress response. We argue that this single cell decoding-based measure
    of information provides an unbiased, quantitative and interpretable measure for
    the fidelity of biological signaling processes. \r\nFinally, in the last section,
    we deal with gene regulation which is primarily controlled by transcription factors
    (TFs) that bind to the DNA to activate gene expression. The possibility that non-cognate
    TFs activate transcription diminishes the accuracy of regulation with potentially
    disastrous effects for the cell. This ’crosstalk’ acts as a previously unexplored
    source of noise in biochemical networks and puts a strong constraint on their
    performance. To mitigate erroneous initiation we propose an out of equilibrium
    scheme that implements kinetic proofreading. We show that such architectures are
    favored  over their equilibrium counterparts for complex organisms despite introducing
    noise in gene expression. "
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Sarah A
  full_name: Cepeda Humerez, Sarah A
  id: 3DEE19A4-F248-11E8-B48F-1D18A9856A87
  last_name: Cepeda Humerez
citation:
  ama: Cepeda Humerez SA. Estimating information flow in single cells. 2019. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:6473">10.15479/AT:ISTA:6473</a>
  apa: Cepeda Humerez, S. A. (2019). <i>Estimating information flow in single cells</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:6473">https://doi.org/10.15479/AT:ISTA:6473</a>
  chicago: Cepeda Humerez, Sarah A. “Estimating Information Flow in Single Cells.”
    Institute of Science and Technology Austria, 2019. <a href="https://doi.org/10.15479/AT:ISTA:6473">https://doi.org/10.15479/AT:ISTA:6473</a>.
  ieee: S. A. Cepeda Humerez, “Estimating information flow in single cells,” Institute
    of Science and Technology Austria, 2019.
  ista: Cepeda Humerez SA. 2019. Estimating information flow in single cells. Institute
    of Science and Technology Austria.
  mla: Cepeda Humerez, Sarah A. <i>Estimating Information Flow in Single Cells</i>.
    Institute of Science and Technology Austria, 2019, doi:<a href="https://doi.org/10.15479/AT:ISTA:6473">10.15479/AT:ISTA:6473</a>.
  short: S.A. Cepeda Humerez, Estimating Information Flow in Single Cells, Institute
    of Science and Technology Austria, 2019.
corr_author: '1'
date_created: 2019-05-21T00:11:23Z
date_published: 2019-05-23T00:00:00Z
date_updated: 2026-04-16T08:37:38Z
day: '23'
ddc:
- '004'
degree_awarded: PhD
department:
- _id: GaTk
doi: 10.15479/AT:ISTA:6473
file:
- access_level: closed
  checksum: 75f9184c1346e10a5de5f9cc7338309a
  content_type: application/zip
  creator: scepeda
  date_created: 2019-05-23T11:18:16Z
  date_updated: 2020-07-14T12:47:31Z
  file_id: '6480'
  file_name: Thesis_Cepeda.zip
  file_size: 23937464
  relation: source_file
- access_level: open_access
  checksum: afdc0633ddbd71d5b13550d7fb4f4454
  content_type: application/pdf
  creator: scepeda
  date_created: 2019-05-23T11:18:13Z
  date_updated: 2020-07-14T12:47:31Z
  file_id: '6481'
  file_name: CepedaThesis.pdf
  file_size: 16646985
  relation: main_file
file_date_updated: 2020-07-14T12:47:31Z
has_accepted_license: '1'
keyword:
- Information estimation
- Time-series
- data analysis
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '135'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '2016'
    relation: dissertation_contains
    status: public
  - id: '281'
    relation: dissertation_contains
    status: public
  - id: '1576'
    relation: dissertation_contains
    status: public
  - id: '6900'
    relation: dissertation_contains
    status: public
status: public
supervisor:
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
title: Estimating information flow in single cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2019'
...
---
_id: '6482'
abstract:
- lang: eng
  text: 'Computer vision systems for automatic image categorization have become accurate
    and reliable enough that they can run continuously for days or even years as components
    of real-world commercial applications. A major open problem in this context, however,
    is quality control. Good classification performance can only be expected if systems
    run under the specific conditions, in particular data distributions, that they
    were trained for. Surprisingly, none of the currently used deep network architectures
    have a built-in functionality that could detect if a network operates on data
    from a distribution it was not trained for, such that potentially a warning to
    the human users could be triggered. In this work, we describe KS(conf), a procedure
    for detecting such outside of specifications (out-of-specs) operation, based on
    statistical testing of the network outputs. We show by extensive experiments using
    the ImageNet, AwA2 and DAVIS datasets on a variety of ConvNets architectures that
    KS(conf) reliably detects out-of-specs situations. It furthermore has a number
    of properties that make it a promising candidate for practical deployment: it
    is easy to implement, adds almost no overhead to the system, works with all networks,
    including pretrained ones, and requires no a priori knowledge of how the data
    distribution could change. '
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Rémy
  full_name: Sun, Rémy
  last_name: Sun
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Sun R, Lampert C. KS(conf): A light-weight test if a ConvNet operates outside
    of Its specifications. In: Vol 11269. Springer Nature; 2019:244-259. doi:<a href="https://doi.org/10.1007/978-3-030-12939-2_18">10.1007/978-3-030-12939-2_18</a>'
  apa: 'Sun, R., &#38; Lampert, C. (2019). KS(conf): A light-weight test if a ConvNet
    operates outside of Its specifications (Vol. 11269, pp. 244–259). Presented at
    the GCPR: Conference on Pattern Recognition, Stuttgart, Germany: Springer Nature.
    <a href="https://doi.org/10.1007/978-3-030-12939-2_18">https://doi.org/10.1007/978-3-030-12939-2_18</a>'
  chicago: 'Sun, Rémy, and Christoph Lampert. “KS(Conf): A Light-Weight Test If a
    ConvNet Operates Outside of Its Specifications,” 11269:244–59. Springer Nature,
    2019. <a href="https://doi.org/10.1007/978-3-030-12939-2_18">https://doi.org/10.1007/978-3-030-12939-2_18</a>.'
  ieee: 'R. Sun and C. Lampert, “KS(conf): A light-weight test if a ConvNet operates
    outside of Its specifications,” presented at the GCPR: Conference on Pattern Recognition,
    Stuttgart, Germany, 2019, vol. 11269, pp. 244–259.'
  ista: 'Sun R, Lampert C. 2019. KS(conf): A light-weight test if a ConvNet operates
    outside of Its specifications. GCPR: Conference on Pattern Recognition, LNCS,
    vol. 11269, 244–259.'
  mla: 'Sun, Rémy, and Christoph Lampert. <i>KS(Conf): A Light-Weight Test If a ConvNet
    Operates Outside of Its Specifications</i>. Vol. 11269, Springer Nature, 2019,
    pp. 244–59, doi:<a href="https://doi.org/10.1007/978-3-030-12939-2_18">10.1007/978-3-030-12939-2_18</a>.'
  short: R. Sun, C. Lampert, in:, Springer Nature, 2019, pp. 244–259.
conference:
  end_date: 2018-10-12
  location: Stuttgart, Germany
  name: 'GCPR: Conference on Pattern Recognition'
  start_date: 2018-10-09
date_created: 2019-05-24T09:48:36Z
date_published: 2019-02-14T00:00:00Z
date_updated: 2025-04-15T07:10:25Z
day: '14'
department:
- _id: ChLa
doi: 10.1007/978-3-030-12939-2_18
ec_funded: 1
external_id:
  arxiv:
  - '1804.04171'
intvolume: '     11269'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.04171
month: '02'
oa: 1
oa_version: Preprint
page: 244-259
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030129385'
  - '9783030129392'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '6944'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: 'KS(conf): A light-weight test if a ConvNet operates outside of Its specifications'
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 11269
year: '2019'
...
---
_id: '6485'
abstract:
- lang: eng
  text: Traditional concurrent programming involves manipulating shared mutable state.
    Alternatives to this programming style are communicating sequential processes
    (CSP) [1] and actor [2] models, which share data via explicit communication. Rendezvous
    channelis the common abstraction for communication between several processes,
    where senders and receivers perform a rendezvous handshake as a part of their
    protocol (senders wait for receivers and vice versa). Additionally to this, channels
    support the select expression. In this work, we present the first efficient lock-free
    channel algorithm, and compare it against Go [3] and Kotlin [4] baseline implementations.
article_processing_charge: No
author:
- first_name: Nikita
  full_name: Koval, Nikita
  id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
  last_name: Koval
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Roman
  full_name: Elizarov, Roman
  last_name: Elizarov
citation:
  ama: Koval N, Alistarh D-A, Elizarov R. <i>Lock-Free Channels for Programming via
    Communicating Sequential Processes</i>. ACM; 2019:417-418. doi:<a href="https://doi.org/10.1145/3293883.3297000">10.1145/3293883.3297000</a>
  apa: 'Koval, N., Alistarh, D.-A., &#38; Elizarov, R. (2019). <i>Lock-free channels
    for programming via communicating sequential processes</i>. <i>Proceedings of
    the 24th Symposium on Principles and Practice of Parallel Programming</i> (pp.
    417–418). Washington, NY, United States: ACM. <a href="https://doi.org/10.1145/3293883.3297000">https://doi.org/10.1145/3293883.3297000</a>'
  chicago: Koval, Nikita, Dan-Adrian Alistarh, and Roman Elizarov. <i>Lock-Free Channels
    for Programming via Communicating Sequential Processes</i>. <i>Proceedings of
    the 24th Symposium on Principles and Practice of Parallel Programming</i>. ACM,
    2019. <a href="https://doi.org/10.1145/3293883.3297000">https://doi.org/10.1145/3293883.3297000</a>.
  ieee: N. Koval, D.-A. Alistarh, and R. Elizarov, <i>Lock-free channels for programming
    via communicating sequential processes</i>. ACM, 2019, pp. 417–418.
  ista: Koval N, Alistarh D-A, Elizarov R. 2019. Lock-free channels for programming
    via communicating sequential processes, ACM,p.
  mla: Koval, Nikita, et al. “Lock-Free Channels for Programming via Communicating
    Sequential Processes.” <i>Proceedings of the 24th Symposium on Principles and
    Practice of Parallel Programming</i>, ACM, 2019, pp. 417–18, doi:<a href="https://doi.org/10.1145/3293883.3297000">10.1145/3293883.3297000</a>.
  short: N. Koval, D.-A. Alistarh, R. Elizarov, Lock-Free Channels for Programming
    via Communicating Sequential Processes, ACM, 2019.
conference:
  end_date: 2019-02-20
  location: Washington, NY, United States
  name: 'PPoPP: Principles and Practice of Parallel Programming'
  start_date: 2019-02-16
date_created: 2019-05-24T10:09:12Z
date_published: 2019-02-01T00:00:00Z
date_updated: 2024-12-11T11:42:22Z
day: '01'
department:
- _id: DaAl
doi: 10.1145/3293883.3297000
external_id:
  isi:
  - '000587604600044'
isi: 1
language:
- iso: eng
month: '02'
oa_version: None
page: 417-418
publication: Proceedings of the 24th Symposium on Principles and Practice of Parallel
  Programming
publication_identifier:
  isbn:
  - '9781450362252'
publication_status: published
publisher: ACM
quality_controlled: '1'
status: public
title: Lock-free channels for programming via communicating sequential processes
type: conference_poster
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '6493'
abstract:
- lang: eng
  text: We present two algorithmic approaches for synthesizing linear hybrid automata
    from experimental data. Unlike previous approaches, our algorithms work without
    a template and generate an automaton with nondeterministic guards and invariants,
    and with an arbitrary number and topology of modes. They thus construct a succinct
    model from the data and provide formal guarantees. In particular, (1) the generated
    automaton can reproduce the data up to a specified tolerance and (2) the automaton
    is tight, given the first guarantee. Our first approach encodes the synthesis
    problem as a logical formula in the theory of linear arithmetic, which can then
    be solved by an SMT solver. This approach minimizes the number of modes in the
    resulting model but is only feasible for limited data sets. To address scalability,
    we propose a second approach that does not enforce to find a minimal model. The
    algorithm constructs an initial automaton and then iteratively extends the automaton
    based on processing new data. Therefore the algorithm is well-suited for online
    and synthesis-in-the-loop applications. The core of the algorithm is a membership
    query that checks whether, within the specified tolerance, a given data set can
    result from the execution of a given automaton. We solve this membership problem
    for linear hybrid automata by repeated reachability computations. We demonstrate
    the effectiveness of the algorithm on synthetic data sets and on cardiac-cell
    measurements.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Miriam
  full_name: Garcia Soto, Miriam
  id: 4B3207F6-F248-11E8-B48F-1D18A9856A87
  last_name: Garcia Soto
  orcid: 0000−0003−2936−5719
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Christian
  full_name: Schilling, Christian
  id: 3A2F4DCE-F248-11E8-B48F-1D18A9856A87
  last_name: Schilling
  orcid: 0000-0003-3658-1065
- first_name: Luka
  full_name: Zeleznik, Luka
  id: 3ADCA2E4-F248-11E8-B48F-1D18A9856A87
  last_name: Zeleznik
citation:
  ama: 'Garcia Soto M, Henzinger TA, Schilling C, Zeleznik L. Membership-based synthesis
    of linear hybrid automata. In: <i>31st International Conference on Computer-Aided
    Verification</i>. Vol 11561. Springer; 2019:297-314. doi:<a href="https://doi.org/10.1007/978-3-030-25540-4_16">10.1007/978-3-030-25540-4_16</a>'
  apa: 'Garcia Soto, M., Henzinger, T. A., Schilling, C., &#38; Zeleznik, L. (2019).
    Membership-based synthesis of linear hybrid automata. In <i>31st International
    Conference on Computer-Aided Verification</i> (Vol. 11561, pp. 297–314). New York
    City, NY, USA: Springer. <a href="https://doi.org/10.1007/978-3-030-25540-4_16">https://doi.org/10.1007/978-3-030-25540-4_16</a>'
  chicago: Garcia Soto, Miriam, Thomas A Henzinger, Christian Schilling, and Luka
    Zeleznik. “Membership-Based Synthesis of Linear Hybrid Automata.” In <i>31st International
    Conference on Computer-Aided Verification</i>, 11561:297–314. Springer, 2019.
    <a href="https://doi.org/10.1007/978-3-030-25540-4_16">https://doi.org/10.1007/978-3-030-25540-4_16</a>.
  ieee: M. Garcia Soto, T. A. Henzinger, C. Schilling, and L. Zeleznik, “Membership-based
    synthesis of linear hybrid automata,” in <i>31st International Conference on Computer-Aided
    Verification</i>, New York City, NY, USA, 2019, vol. 11561, pp. 297–314.
  ista: 'Garcia Soto M, Henzinger TA, Schilling C, Zeleznik L. 2019. Membership-based
    synthesis of linear hybrid automata. 31st International Conference on Computer-Aided
    Verification. CAV: Computer-Aided Verification, LNCS, vol. 11561, 297–314.'
  mla: Garcia Soto, Miriam, et al. “Membership-Based Synthesis of Linear Hybrid Automata.”
    <i>31st International Conference on Computer-Aided Verification</i>, vol. 11561,
    Springer, 2019, pp. 297–314, doi:<a href="https://doi.org/10.1007/978-3-030-25540-4_16">10.1007/978-3-030-25540-4_16</a>.
  short: M. Garcia Soto, T.A. Henzinger, C. Schilling, L. Zeleznik, in:, 31st International
    Conference on Computer-Aided Verification, Springer, 2019, pp. 297–314.
conference:
  end_date: 2019-07-18
  location: New York City, NY, USA
  name: 'CAV: Computer-Aided Verification'
  start_date: 2019-07-15
corr_author: '1'
date_created: 2019-05-27T07:09:53Z
date_published: 2019-07-12T00:00:00Z
date_updated: 2025-04-15T06:26:13Z
day: '12'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-030-25540-4_16
ec_funded: 1
external_id:
  isi:
  - '000491468000016'
file:
- access_level: open_access
  checksum: 1f1d61b83a151031745ef70a501da3d6
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-14T11:05:30Z
  date_updated: 2020-07-14T12:47:32Z
  file_id: '6817'
  file_name: 2019_CAV_GarciaSoto.pdf
  file_size: 674795
  relation: main_file
file_date_updated: 2020-07-14T12:47:32Z
has_accepted_license: '1'
intvolume: '     11561'
isi: 1
keyword:
- Synthesis
- Linear hybrid automaton
- Membership
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 297-314
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
publication: 31st International Conference on Computer-Aided Verification
publication_identifier:
  isbn:
  - '9783030255398'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Membership-based synthesis of linear hybrid automata
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11561
year: '2019'
...
---
_id: '6528'
abstract:
- lang: eng
  text: We construct a verifiable delay function (VDF) by showing how the Rivest-Shamir-Wagner
    time-lock puzzle can be made publicly verifiable. Concretely, we give a statistically
    sound public-coin protocol to prove that a tuple (N,x,T,y) satisfies y=x2T (mod
    N) where the prover doesn’t know the factorization of N and its running time is
    dominated by solving the puzzle, that is, compute x2T, which is conjectured to
    require T sequential squarings. To get a VDF we make this protocol non-interactive
    using the Fiat-Shamir heuristic.The motivation for this work comes from the Chia
    blockchain design, which uses a VDF as akey ingredient. For typical parameters
    (T≤2 40, N= 2048), our proofs are of size around 10K B, verification cost around
    three RSA exponentiations and computing the proof is 8000 times faster than solving
    the puzzle even without any parallelism.
alternative_title:
- LIPIcs
article_number: '60'
article_processing_charge: No
author:
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: 'Pietrzak KZ. Simple verifiable delay functions. In: <i>10th Innovations in
    Theoretical Computer Science Conference</i>. Vol 124. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2019. doi:<a href="https://doi.org/10.4230/LIPICS.ITCS.2019.60">10.4230/LIPICS.ITCS.2019.60</a>'
  apa: 'Pietrzak, K. Z. (2019). Simple verifiable delay functions. In <i>10th Innovations
    in Theoretical Computer Science Conference</i> (Vol. 124). San Diego, CA, United
    States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPICS.ITCS.2019.60">https://doi.org/10.4230/LIPICS.ITCS.2019.60</a>'
  chicago: Pietrzak, Krzysztof Z. “Simple Verifiable Delay Functions.” In <i>10th
    Innovations in Theoretical Computer Science Conference</i>, Vol. 124. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2019. <a href="https://doi.org/10.4230/LIPICS.ITCS.2019.60">https://doi.org/10.4230/LIPICS.ITCS.2019.60</a>.
  ieee: K. Z. Pietrzak, “Simple verifiable delay functions,” in <i>10th Innovations
    in Theoretical Computer Science Conference</i>, San Diego, CA, United States,
    2019, vol. 124.
  ista: 'Pietrzak KZ. 2019. Simple verifiable delay functions. 10th Innovations in
    Theoretical Computer Science Conference. ITCS: Innovations in Theoretical Computer
    Science, LIPIcs, vol. 124, 60.'
  mla: Pietrzak, Krzysztof Z. “Simple Verifiable Delay Functions.” <i>10th Innovations
    in Theoretical Computer Science Conference</i>, vol. 124, 60, Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik, 2019, doi:<a href="https://doi.org/10.4230/LIPICS.ITCS.2019.60">10.4230/LIPICS.ITCS.2019.60</a>.
  short: K.Z. Pietrzak, in:, 10th Innovations in Theoretical Computer Science Conference,
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.
conference:
  end_date: 2019-01-12
  location: San Diego, CA, United States
  name: 'ITCS: Innovations in Theoretical Computer Science'
  start_date: 2019-01-10
date_created: 2019-06-06T14:12:36Z
date_published: 2019-01-10T00:00:00Z
date_updated: 2025-07-10T11:53:29Z
day: '10'
ddc:
- '000'
department:
- _id: KrPi
doi: 10.4230/LIPICS.ITCS.2019.60
ec_funded: 1
file:
- access_level: open_access
  checksum: f0ae1bb161431d9db3dea5ace082bfb5
  content_type: application/pdf
  creator: dernst
  date_created: 2019-06-06T14:22:04Z
  date_updated: 2020-07-14T12:47:33Z
  file_id: '6529'
  file_name: 2019_LIPIcs_Pietrzak.pdf
  file_size: 558770
  relation: main_file
file_date_updated: 2020-07-14T12:47:33Z
has_accepted_license: '1'
intvolume: '       124'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2018/627
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '682815'
  name: Teaching Old Crypto New Tricks
publication: 10th Innovations in Theoretical Computer Science Conference
publication_identifier:
  isbn:
  - 978-3-95977-095-8
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Simple verifiable delay functions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 124
year: '2019'
...
---
_id: '6556'
abstract:
- lang: eng
  text: 'Motivated by fixed-parameter tractable (FPT) problems in computational topology,
    we consider the treewidth tw(M) of a compact, connected 3-manifold M, defined
    to be the minimum treewidth of the face pairing graph of any triangulation T of
    M. In this setting the relationship between the topology of a 3-manifold and its
    treewidth is of particular interest. First, as a corollary of work of Jaco and
    Rubinstein, we prove that for any closed, orientable 3-manifold M the treewidth
    tw(M) is at most 4g(M)-2, where g(M) denotes Heegaard genus of M. In combination
    with our earlier work with Wagner, this yields that for non-Haken manifolds the
    Heegaard genus and the treewidth are within a constant factor. Second, we characterize
    all 3-manifolds of treewidth one: These are precisely the lens spaces and a single
    other Seifert fibered space. Furthermore, we show that all remaining orientable
    Seifert fibered spaces over the 2-sphere or a non-orientable surface have treewidth
    two. In particular, for every spherical 3-manifold we exhibit a triangulation
    of treewidth at most two. Our results further validate the parameter of treewidth
    (and other related parameters such as cutwidth or congestion) to be useful for
    topological computing, and also shed more light on the scope of existing FPT-algorithms
    in the field.'
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: Kristóf
  full_name: Huszár, Kristóf
  id: 33C26278-F248-11E8-B48F-1D18A9856A87
  last_name: Huszár
  orcid: 0000-0002-5445-5057
- first_name: Jonathan
  full_name: Spreer, Jonathan
  last_name: Spreer
citation:
  ama: 'Huszár K, Spreer J. 3-manifold triangulations with small treewidth. In: <i>35th
    International Symposium on Computational Geometry</i>. Vol 129. Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik; 2019:44:1-44:20. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2019.44">10.4230/LIPIcs.SoCG.2019.44</a>'
  apa: 'Huszár, K., &#38; Spreer, J. (2019). 3-manifold triangulations with small
    treewidth. In <i>35th International Symposium on Computational Geometry</i> (Vol.
    129, p. 44:1-44:20). Portland, Oregon, United States: Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2019.44">https://doi.org/10.4230/LIPIcs.SoCG.2019.44</a>'
  chicago: Huszár, Kristóf, and Jonathan Spreer. “3-Manifold Triangulations with Small
    Treewidth.” In <i>35th International Symposium on Computational Geometry</i>,
    129:44:1-44:20. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2019.44">https://doi.org/10.4230/LIPIcs.SoCG.2019.44</a>.
  ieee: K. Huszár and J. Spreer, “3-manifold triangulations with small treewidth,”
    in <i>35th International Symposium on Computational Geometry</i>, Portland, Oregon,
    United States, 2019, vol. 129, p. 44:1-44:20.
  ista: 'Huszár K, Spreer J. 2019. 3-manifold triangulations with small treewidth.
    35th International Symposium on Computational Geometry. SoCG: Symposium on Computational
    Geometry, LIPIcs, vol. 129, 44:1-44:20.'
  mla: Huszár, Kristóf, and Jonathan Spreer. “3-Manifold Triangulations with Small
    Treewidth.” <i>35th International Symposium on Computational Geometry</i>, vol.
    129, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019, p. 44:1-44:20, doi:<a
    href="https://doi.org/10.4230/LIPIcs.SoCG.2019.44">10.4230/LIPIcs.SoCG.2019.44</a>.
  short: K. Huszár, J. Spreer, in:, 35th International Symposium on Computational
    Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019, p. 44:1-44:20.
conference:
  end_date: 2019-06-21
  location: Portland, Oregon, United States
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2019-06-18
corr_author: '1'
date_created: 2019-06-11T20:09:57Z
date_published: 2019-06-01T00:00:00Z
date_updated: 2026-04-08T07:21:27Z
day: '01'
ddc:
- '516'
department:
- _id: UlWa
doi: 10.4230/LIPIcs.SoCG.2019.44
external_id:
  arxiv:
  - '1812.05528'
file:
- access_level: open_access
  checksum: 29d18c435368468aa85823dabb157e43
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-06-12T06:45:33Z
  date_updated: 2020-07-14T12:47:33Z
  file_id: '6557'
  file_name: 2019_LIPIcs-Huszar.pdf
  file_size: 905885
  relation: main_file
file_date_updated: 2020-07-14T12:47:33Z
has_accepted_license: '1'
intvolume: '       129'
keyword:
- computational 3-manifold topology
- fixed-parameter tractability
- layered triangulations
- structural graph theory
- treewidth
- cutwidth
- Heegaard genus
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 44:1-44:20
publication: 35th International Symposium on Computational Geometry
publication_identifier:
  isbn:
  - 978-3-95977-104-7
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
  record:
  - id: '8032'
    relation: part_of_dissertation
    status: public
scopus_import: '1'
status: public
title: 3-manifold triangulations with small treewidth
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 129
year: '2019'
...
---
_id: '6647'
abstract:
- lang: eng
  text: The Tverberg theorem is one of the cornerstones of discrete geometry. It states
    that, given a set X of at least (d+1)(r-1)+1 points in R^d, one can find a partition
    X=X_1 cup ... cup X_r of X, such that the convex hulls of the X_i, i=1,...,r,
    all share a common point. In this paper, we prove a strengthening of this theorem
    that guarantees a partition which, in addition to the above, has the property
    that the boundaries of full-dimensional convex hulls have pairwise nonempty intersections.
    Possible generalizations and algorithmic aspects are also discussed. As a concrete
    application, we show that any n points in the plane in general position span floor[n/3]
    vertex-disjoint triangles that are pairwise crossing, meaning that their boundaries
    have pairwise nonempty intersections; this number is clearly best possible. A
    previous result of Alvarez-Rebollar et al. guarantees floor[n/6] pairwise crossing
    triangles. Our result generalizes to a result about simplices in R^d,d >=2.
alternative_title:
- LIPIcs
arxiv: 1
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: Bernd
  full_name: Gärtner, Bernd
  last_name: Gärtner
- first_name: Andrey
  full_name: Kupavskii, Andrey
  last_name: Kupavskii
- first_name: Pavel
  full_name: Valtr, Pavel
  last_name: Valtr
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: 'Fulek R, Gärtner B, Kupavskii A, Valtr P, Wagner U. The crossing Tverberg
    theorem. In: <i>35th International Symposium on Computational Geometry</i>. Vol
    129. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2019:38:1-38:13. doi:<a
    href="https://doi.org/10.4230/LIPICS.SOCG.2019.38">10.4230/LIPICS.SOCG.2019.38</a>'
  apa: 'Fulek, R., Gärtner, B., Kupavskii, A., Valtr, P., &#38; Wagner, U. (2019).
    The crossing Tverberg theorem. In <i>35th International Symposium on Computational
    Geometry</i> (Vol. 129, p. 38:1-38:13). Portland, OR, United States: Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPICS.SOCG.2019.38">https://doi.org/10.4230/LIPICS.SOCG.2019.38</a>'
  chicago: Fulek, Radoslav, Bernd Gärtner, Andrey Kupavskii, Pavel Valtr, and Uli
    Wagner. “The Crossing Tverberg Theorem.” In <i>35th International Symposium on
    Computational Geometry</i>, 129:38:1-38:13. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2019. <a href="https://doi.org/10.4230/LIPICS.SOCG.2019.38">https://doi.org/10.4230/LIPICS.SOCG.2019.38</a>.
  ieee: R. Fulek, B. Gärtner, A. Kupavskii, P. Valtr, and U. Wagner, “The crossing
    Tverberg theorem,” in <i>35th International Symposium on Computational Geometry</i>,
    Portland, OR, United States, 2019, vol. 129, p. 38:1-38:13.
  ista: 'Fulek R, Gärtner B, Kupavskii A, Valtr P, Wagner U. 2019. The crossing Tverberg
    theorem. 35th International Symposium on Computational Geometry. SoCG 2019: Symposium
    on Computational Geometry, LIPIcs, vol. 129, 38:1-38:13.'
  mla: Fulek, Radoslav, et al. “The Crossing Tverberg Theorem.” <i>35th International
    Symposium on Computational Geometry</i>, vol. 129, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2019, p. 38:1-38:13, doi:<a href="https://doi.org/10.4230/LIPICS.SOCG.2019.38">10.4230/LIPICS.SOCG.2019.38</a>.
  short: R. Fulek, B. Gärtner, A. Kupavskii, P. Valtr, U. Wagner, in:, 35th International
    Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2019, p. 38:1-38:13.
conference:
  end_date: 2019-06-21
  location: Portland, OR, United States
  name: 'SoCG 2019: Symposium on Computational Geometry'
  start_date: 2019-06-18
corr_author: '1'
date_created: 2019-07-17T10:35:04Z
date_published: 2019-06-01T00:00:00Z
date_updated: 2025-04-14T13:52:36Z
day: '01'
ddc:
- '000'
- '510'
department:
- _id: UlWa
doi: 10.4230/LIPICS.SOCG.2019.38
external_id:
  arxiv:
  - '1812.04911'
file:
- access_level: open_access
  checksum: d6d017f8b41291b94d102294fa96ae9c
  content_type: application/pdf
  creator: dernst
  date_created: 2019-07-24T06:54:52Z
  date_updated: 2020-07-14T12:47:35Z
  file_id: '6667'
  file_name: 2019_LIPICS_Fulek.pdf
  file_size: 559837
  relation: main_file
file_date_updated: 2020-07-14T12:47:35Z
has_accepted_license: '1'
intvolume: '       129'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 38:1-38:13
project:
- _id: 261FA626-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02281
  name: Eliminating intersections in drawings of graphs
publication: 35th International Symposium on Computational Geometry
publication_identifier:
  isbn:
  - '9783959771047'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
  record:
  - id: '13974'
    relation: later_version
    status: public
scopus_import: 1
status: public
title: The crossing Tverberg theorem
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 129
year: '2019'
...
---
_id: '6663'
abstract:
- lang: eng
  text: Consider the problem of constructing a polar code of block length N for a
    given transmission channel W. Previous approaches require one to compute the reliability
    of the N synthetic channels and then use only those that are sufficiently reliable.
    However, we know from two independent works by Schürch and by Bardet et al. that
    the synthetic channels are partially ordered with respect to degradation. Hence,
    it is natural to ask whether the partial order can be exploited to reduce the
    computational burden of the construction problem. We show that, if we take advantage
    of the partial order, we can construct a polar code by computing the reliability
    of roughly a fraction 1/ log 3/2 N of the synthetic channels. In particular, we
    prove that N/ log 3/2 N is a lower bound on the number of synthetic channels to
    be considered and such a bound is tight up to a multiplicative factor log log
    N. This set of roughly N/ log 3/2 N synthetic channels is universal, in the sense
    that it allows one to construct polar codes for any W, and it can be identified
    by solving a maximum matching problem on a bipartite graph. Our proof technique
    consists of reducing the construction problem to the problem of computing the
    maximum cardinality of an antichain for a suitable partially ordered set. As such,
    this method is general, and it can be used to further improve the complexity of
    the construction problem, in case a refined partial order on the synthetic channels
    of polar codes is discovered.
arxiv: 1
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Hamed
  full_name: Hassani, Hamed
  last_name: Hassani
- first_name: Rudiger
  full_name: Urbanke, Rudiger
  last_name: Urbanke
citation:
  ama: Mondelli M, Hassani H, Urbanke R. Construction of polar codes with sublinear
    complexity. <i>IEEE</i>. 2019;65(5):2782-2791. doi:<a href="https://doi.org/10.1109/tit.2018.2889667">10.1109/tit.2018.2889667</a>
  apa: Mondelli, M., Hassani, H., &#38; Urbanke, R. (2019). Construction of polar
    codes with sublinear complexity. <i>IEEE</i>. IEEE. <a href="https://doi.org/10.1109/tit.2018.2889667">https://doi.org/10.1109/tit.2018.2889667</a>
  chicago: Mondelli, Marco, Hamed Hassani, and Rudiger Urbanke. “Construction of Polar
    Codes with Sublinear Complexity.” <i>IEEE</i>. IEEE, 2019. <a href="https://doi.org/10.1109/tit.2018.2889667">https://doi.org/10.1109/tit.2018.2889667</a>.
  ieee: M. Mondelli, H. Hassani, and R. Urbanke, “Construction of polar codes with
    sublinear complexity,” <i>IEEE</i>, vol. 65, no. 5. IEEE, pp. 2782–2791, 2019.
  ista: Mondelli M, Hassani H, Urbanke R. 2019. Construction of polar codes with sublinear
    complexity. IEEE. 65(5), 2782–2791.
  mla: Mondelli, Marco, et al. “Construction of Polar Codes with Sublinear Complexity.”
    <i>IEEE</i>, vol. 65, no. 5, IEEE, 2019, pp. 2782–91, doi:<a href="https://doi.org/10.1109/tit.2018.2889667">10.1109/tit.2018.2889667</a>.
  short: M. Mondelli, H. Hassani, R. Urbanke, IEEE 65 (2019) 2782–2791.
date_created: 2019-07-23T07:32:57Z
date_published: 2019-05-01T00:00:00Z
date_updated: 2023-02-23T12:50:20Z
day: '01'
doi: 10.1109/tit.2018.2889667
extern: '1'
external_id:
  arxiv:
  - '1612.05295'
intvolume: '        65'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1612.05295
month: '05'
oa: 1
oa_version: Preprint
page: 2782-2791
publication: IEEE
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  record:
  - id: '6729'
    relation: earlier_version
    status: public
status: public
title: Construction of polar codes with sublinear complexity
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 65
year: '2019'
...
---
_id: '6672'
abstract:
- lang: eng
  text: The construction of anisotropic triangulations is desirable for various applications,
    such as the numerical solving of partial differential equations and the representation
    of surfaces in graphics. To solve this notoriously difficult problem in a practical
    way, we introduce the discrete Riemannian Voronoi diagram, a discrete structure
    that approximates the Riemannian Voronoi diagram. This structure has been implemented
    and was shown to lead to good triangulations in $\mathbb{R}^2$ and on surfaces
    embedded in $\mathbb{R}^3$ as detailed in our experimental companion paper. In
    this paper, we study theoretical aspects of our structure. Given a finite set
    of points $\mathcal{P}$ in a domain $\Omega$ equipped with a Riemannian metric,
    we compare the discrete Riemannian Voronoi diagram of $\mathcal{P}$ to its Riemannian
    Voronoi diagram. Both diagrams have dual structures called the discrete Riemannian
    Delaunay and the Riemannian Delaunay complex. We provide conditions that guarantee
    that these dual structures are identical. It then follows from previous results
    that the discrete Riemannian Delaunay complex can be embedded in $\Omega$ under
    sufficient conditions, leading to an anisotropic triangulation with curved simplices.
    Furthermore, we show that, under similar conditions, the simplices of this triangulation
    can be straightened.
arxiv: 1
author:
- first_name: Jean-Daniel
  full_name: Boissonnat, Jean-Daniel
  last_name: Boissonnat
- first_name: Mael
  full_name: Rouxel-Labbé, Mael
  last_name: Rouxel-Labbé
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat J-D, Rouxel-Labbé M, Wintraecken M. Anisotropic triangulations via
    discrete Riemannian Voronoi diagrams. <i>SIAM Journal on Computing</i>. 2019;48(3):1046-1097.
    doi:<a href="https://doi.org/10.1137/17m1152292">10.1137/17m1152292</a>
  apa: Boissonnat, J.-D., Rouxel-Labbé, M., &#38; Wintraecken, M. (2019). Anisotropic
    triangulations via discrete Riemannian Voronoi diagrams. <i>SIAM Journal on Computing</i>.
    Society for Industrial &#38; Applied Mathematics (SIAM). <a href="https://doi.org/10.1137/17m1152292">https://doi.org/10.1137/17m1152292</a>
  chicago: Boissonnat, Jean-Daniel, Mael Rouxel-Labbé, and Mathijs Wintraecken. “Anisotropic
    Triangulations via Discrete Riemannian Voronoi Diagrams.” <i>SIAM Journal on Computing</i>.
    Society for Industrial &#38; Applied Mathematics (SIAM), 2019. <a href="https://doi.org/10.1137/17m1152292">https://doi.org/10.1137/17m1152292</a>.
  ieee: J.-D. Boissonnat, M. Rouxel-Labbé, and M. Wintraecken, “Anisotropic triangulations
    via discrete Riemannian Voronoi diagrams,” <i>SIAM Journal on Computing</i>, vol.
    48, no. 3. Society for Industrial &#38; Applied Mathematics (SIAM), pp. 1046–1097,
    2019.
  ista: Boissonnat J-D, Rouxel-Labbé M, Wintraecken M. 2019. Anisotropic triangulations
    via discrete Riemannian Voronoi diagrams. SIAM Journal on Computing. 48(3), 1046–1097.
  mla: Boissonnat, Jean-Daniel, et al. “Anisotropic Triangulations via Discrete Riemannian
    Voronoi Diagrams.” <i>SIAM Journal on Computing</i>, vol. 48, no. 3, Society for
    Industrial &#38; Applied Mathematics (SIAM), 2019, pp. 1046–97, doi:<a href="https://doi.org/10.1137/17m1152292">10.1137/17m1152292</a>.
  short: J.-D. Boissonnat, M. Rouxel-Labbé, M. Wintraecken, SIAM Journal on Computing
    48 (2019) 1046–1097.
date_created: 2019-07-24T08:42:12Z
date_published: 2019-05-21T00:00:00Z
date_updated: 2021-01-12T08:08:30Z
day: '21'
doi: 10.1137/17m1152292
extern: '1'
external_id:
  arxiv:
  - '1703.06487'
intvolume: '        48'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1703.06487
month: '05'
oa: 1
oa_version: Preprint
page: 1046-1097
publication: SIAM Journal on Computing
publication_identifier:
  eissn:
  - 1095-7111
  issn:
  - 0097-5397
publication_status: published
publisher: Society for Industrial & Applied Mathematics (SIAM)
quality_controlled: '1'
status: public
title: Anisotropic triangulations via discrete Riemannian Voronoi diagrams
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2019'
...
---
OA_place: publisher
_id: '6681'
abstract:
- lang: eng
  text: "The first part of the thesis considers the computational aspects of the homotopy
    groups πd(X) of a topological space X. It is well known that there is no algorithm
    to decide whether the fundamental group π1(X) of a given finite simplicial complex
    X is trivial. On the other hand, there are several algorithms that, given a finite
    simplicial complex X that is simply connected (i.e., with π1(X) trivial), compute
    the higher homotopy group πd(X) for any given d ≥ 2.\r\nHowever, these algorithms
    come with a caveat: They compute the isomorphism type of πd(X), d ≥ 2 as an abstract
    finitely generated abelian group given by generators and relations, but they work
    with very implicit representations of the elements of πd(X). We present an algorithm
    that, given a simply connected space X, computes πd(X) and represents its elements
    as simplicial maps from suitable triangulations of the d-sphere Sd to X. For fixed
    d, the algorithm runs in time exponential in size(X), the number of simplices
    of X. Moreover, we prove that this is optimal: For every fixed d ≥ 2,\r\nwe construct
    a family of simply connected spaces X such that for any simplicial map representing
    a generator of πd(X), the size of the triangulation of S d on which the map is
    defined, is exponential in size(X).\r\nIn the second part of the thesis, we prove
    that the following question is algorithmically undecidable for d < ⌊3(k+1)/2⌋,
    k ≥ 5 and (k, d) ̸= (5, 7), which covers essentially everything outside the meta-stable
    range: Given a finite simplicial complex K of dimension k, decide whether there
    exists a piecewise-linear (i.e., linear on an arbitrarily fine subdivision of
    K) embedding f : K ↪→ Rd of K into a d-dimensional Euclidean space."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Stephan Y
  full_name: Zhechev, Stephan Y
  id: 3AA52972-F248-11E8-B48F-1D18A9856A87
  last_name: Zhechev
citation:
  ama: Zhechev SY. Algorithmic aspects of homotopy theory and embeddability. 2019.
    doi:<a href="https://doi.org/10.15479/AT:ISTA:6681">10.15479/AT:ISTA:6681</a>
  apa: Zhechev, S. Y. (2019). <i>Algorithmic aspects of homotopy theory and embeddability</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:6681">https://doi.org/10.15479/AT:ISTA:6681</a>
  chicago: Zhechev, Stephan Y. “Algorithmic Aspects of Homotopy Theory and Embeddability.”
    Institute of Science and Technology Austria, 2019. <a href="https://doi.org/10.15479/AT:ISTA:6681">https://doi.org/10.15479/AT:ISTA:6681</a>.
  ieee: S. Y. Zhechev, “Algorithmic aspects of homotopy theory and embeddability,”
    Institute of Science and Technology Austria, 2019.
  ista: Zhechev SY. 2019. Algorithmic aspects of homotopy theory and embeddability.
    Institute of Science and Technology Austria.
  mla: Zhechev, Stephan Y. <i>Algorithmic Aspects of Homotopy Theory and Embeddability</i>.
    Institute of Science and Technology Austria, 2019, doi:<a href="https://doi.org/10.15479/AT:ISTA:6681">10.15479/AT:ISTA:6681</a>.
  short: S.Y. Zhechev, Algorithmic Aspects of Homotopy Theory and Embeddability, Institute
    of Science and Technology Austria, 2019.
corr_author: '1'
date_created: 2019-07-26T11:14:34Z
date_published: 2019-08-08T00:00:00Z
date_updated: 2026-04-16T12:20:40Z
day: '08'
ddc:
- '514'
degree_awarded: PhD
department:
- _id: UlWa
doi: 10.15479/AT:ISTA:6681
file:
- access_level: open_access
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  date_updated: 2020-07-14T12:47:37Z
  file_id: '6772'
  file_name: Stephan_Zhechev_thesis.tex
  file_size: 303988
  relation: source_file
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  checksum: 86b374d264ca2dd53e712728e253ee75
  content_type: application/zip
  creator: szhechev
  date_created: 2019-08-07T13:03:34Z
  date_updated: 2020-07-14T12:47:37Z
  file_id: '6773'
  file_name: supplementary_material.zip
  file_size: 1087004
  relation: supplementary_material
file_date_updated: 2020-07-14T12:47:37Z
has_accepted_license: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: '104'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '6774'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
title: Algorithmic aspects of homotopy theory and embeddability
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2019'
...
---
_id: '6725'
abstract:
- lang: eng
  text: "A Valued Constraint Satisfaction Problem (VCSP) provides a common framework
    that can express a wide range of discrete optimization problems. A VCSP instance
    is given by a finite set of variables, a finite domain of labels, and an objective
    function to be minimized. This function is represented as a sum of terms where
    each term depends on a subset of the variables. To obtain different classes of
    optimization problems, one can restrict all terms to come from a fixed set Γ of
    cost functions, called a language. \r\nRecent breakthrough results have established
    a complete complexity classification of such classes with respect to language
    Γ: if all cost functions in Γ satisfy a certain algebraic condition then all Γ-instances
    can be solved in polynomial time, otherwise the problem is NP-hard. Unfortunately,
    testing this condition for a given language Γ is known to be NP-hard. We thus
    study exponential algorithms for this meta-problem. We show that the tractability
    condition of a finite-valued language Γ can be tested in O(3‾√3|D|⋅poly(size(Γ)))
    time, where D is the domain of Γ and poly(⋅) is some fixed polynomial. We also
    obtain a matching lower bound under the Strong Exponential Time Hypothesis (SETH).
    More precisely, we prove that for any constant δ<1 there is no O(3‾√3δ|D|) algorithm,
    assuming that SETH holds."
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: 'Kolmogorov V. Testing the complexity of a valued CSP language. In: <i>46th
    International Colloquium on Automata, Languages and Programming</i>. Vol 132.
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2019:77:1-77:12. doi:<a href="https://doi.org/10.4230/LIPICS.ICALP.2019.77">10.4230/LIPICS.ICALP.2019.77</a>'
  apa: 'Kolmogorov, V. (2019). Testing the complexity of a valued CSP language. In
    <i>46th International Colloquium on Automata, Languages and Programming</i> (Vol.
    132, p. 77:1-77:12). Patras, Greece: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
    <a href="https://doi.org/10.4230/LIPICS.ICALP.2019.77">https://doi.org/10.4230/LIPICS.ICALP.2019.77</a>'
  chicago: Kolmogorov, Vladimir. “Testing the Complexity of a Valued CSP Language.”
    In <i>46th International Colloquium on Automata, Languages and Programming</i>,
    132:77:1-77:12. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019. <a href="https://doi.org/10.4230/LIPICS.ICALP.2019.77">https://doi.org/10.4230/LIPICS.ICALP.2019.77</a>.
  ieee: V. Kolmogorov, “Testing the complexity of a valued CSP language,” in <i>46th
    International Colloquium on Automata, Languages and Programming</i>, Patras, Greece,
    2019, vol. 132, p. 77:1-77:12.
  ista: 'Kolmogorov V. 2019. Testing the complexity of a valued CSP language. 46th
    International Colloquium on Automata, Languages and Programming. ICALP: Automata,
    Languages and Programming, LIPIcs, vol. 132, 77:1-77:12.'
  mla: Kolmogorov, Vladimir. “Testing the Complexity of a Valued CSP Language.” <i>46th
    International Colloquium on Automata, Languages and Programming</i>, vol. 132,
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019, p. 77:1-77:12, doi:<a
    href="https://doi.org/10.4230/LIPICS.ICALP.2019.77">10.4230/LIPICS.ICALP.2019.77</a>.
  short: V. Kolmogorov, in:, 46th International Colloquium on Automata, Languages
    and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019, p. 77:1-77:12.
conference:
  end_date: 2019-07-12
  location: Patras, Greece
  name: 'ICALP: Automata, Languages and Programming'
  start_date: 2019-07-08
date_created: 2019-07-29T12:23:29Z
date_published: 2019-07-01T00:00:00Z
date_updated: 2025-07-10T11:53:47Z
day: '01'
ddc:
- '000'
department:
- _id: VlKo
doi: 10.4230/LIPICS.ICALP.2019.77
ec_funded: 1
external_id:
  arxiv:
  - '1803.02289'
file:
- access_level: open_access
  checksum: f5ebee8eec6ae09e30365578ee63a492
  content_type: application/pdf
  creator: dernst
  date_created: 2019-07-31T07:01:45Z
  date_updated: 2020-07-14T12:47:38Z
  file_id: '6738'
  file_name: 2019_LIPICS_Kolmogorov.pdf
  file_size: 575475
  relation: main_file
file_date_updated: 2020-07-14T12:47:38Z
has_accepted_license: '1'
intvolume: '       132'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 77:1-77:12
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '616160'
  name: 'Discrete Optimization in Computer Vision: Theory and Practice'
publication: 46th International Colloquium on Automata, Languages and Programming
publication_identifier:
  isbn:
  - 978-3-95977-109-2
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Testing the complexity of a valued CSP language
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2019'
...
---
_id: '6726'
abstract:
- lang: eng
  text: Randomness is an essential part of any secure cryptosystem, but many constructions
    rely on distributions that are not uniform. This is particularly true for lattice
    based cryptosystems, which more often than not make use of discrete Gaussian distributions
    over the integers. For practical purposes it is crucial to evaluate the impact
    that approximation errors have on the security of a scheme to provide the best
    possible trade-off between security and performance. Recent years have seen surprising
    results allowing to use relatively low precision while maintaining high levels
    of security. A key insight in these results is that sampling a distribution with
    low relative error can provide very strong security guarantees. Since floating
    point numbers provide guarantees on the relative approximation error, they seem
    a suitable tool in this setting, but it is not obvious which sampling algorithms
    can actually profit from them. While previous works have shown that inversion
    sampling can be adapted to provide a low relative error (Pöppelmann et al., CHES
    2014; Prest, ASIACRYPT 2017), other works have called into question if this is
    possible for other sampling techniques (Zheng et al., Eprint report 2018/309).
    In this work, we consider all sampling algorithms that are popular in the cryptographic
    setting and analyze the relationship of floating point precision and the resulting
    relative error. We show that all of the algorithms either natively achieve a low
    relative error or can be adapted to do so.
article_processing_charge: No
author:
- first_name: Michael
  full_name: Walter, Michael
  id: 488F98B0-F248-11E8-B48F-1D18A9856A87
  last_name: Walter
  orcid: 0000-0003-3186-2482
citation:
  ama: 'Walter M. Sampling the integers with low relative error. In: Buchmann J, Nitaj
    A, Rachidi T, eds. <i>Progress in Cryptology – AFRICACRYPT 2019</i>. Vol 11627.
    LNCS. Cham: Springer Nature; 2019:157-180. doi:<a href="https://doi.org/10.1007/978-3-030-23696-0_9">10.1007/978-3-030-23696-0_9</a>'
  apa: 'Walter, M. (2019). Sampling the integers with low relative error. In J. Buchmann,
    A. Nitaj, &#38; T. Rachidi (Eds.), <i>Progress in Cryptology – AFRICACRYPT 2019</i>
    (Vol. 11627, pp. 157–180). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-23696-0_9">https://doi.org/10.1007/978-3-030-23696-0_9</a>'
  chicago: 'Walter, Michael. “Sampling the Integers with Low Relative Error.” In <i>Progress
    in Cryptology – AFRICACRYPT 2019</i>, edited by J Buchmann, A Nitaj, and T Rachidi,
    11627:157–80. LNCS. Cham: Springer Nature, 2019. <a href="https://doi.org/10.1007/978-3-030-23696-0_9">https://doi.org/10.1007/978-3-030-23696-0_9</a>.'
  ieee: 'M. Walter, “Sampling the integers with low relative error,” in <i>Progress
    in Cryptology – AFRICACRYPT 2019</i>, vol. 11627, J. Buchmann, A. Nitaj, and T.
    Rachidi, Eds. Cham: Springer Nature, 2019, pp. 157–180.'
  ista: 'Walter M. 2019.Sampling the integers with low relative error. In: Progress
    in Cryptology – AFRICACRYPT 2019. vol. 11627, 157–180.'
  mla: Walter, Michael. “Sampling the Integers with Low Relative Error.” <i>Progress
    in Cryptology – AFRICACRYPT 2019</i>, edited by J Buchmann et al., vol. 11627,
    Springer Nature, 2019, pp. 157–80, doi:<a href="https://doi.org/10.1007/978-3-030-23696-0_9">10.1007/978-3-030-23696-0_9</a>.
  short: M. Walter, in:, J. Buchmann, A. Nitaj, T. Rachidi (Eds.), Progress in Cryptology
    – AFRICACRYPT 2019, Springer Nature, Cham, 2019, pp. 157–180.
conference:
  end_date: 2019-07-11
  location: Rabat, Morocco
  name: 'AFRICACRYPT: International Conference on Cryptology in Africa'
  start_date: 2019-07-09
date_created: 2019-07-29T12:25:31Z
date_published: 2019-06-29T00:00:00Z
date_updated: 2025-09-10T10:38:28Z
day: '29'
department:
- _id: KrPi
doi: 10.1007/978-3-030-23696-0_9
ec_funded: 1
editor:
- first_name: J
  full_name: Buchmann, J
  last_name: Buchmann
- first_name: A
  full_name: Nitaj, A
  last_name: Nitaj
- first_name: T
  full_name: Rachidi, T
  last_name: Rachidi
external_id:
  isi:
  - '001299240700009'
intvolume: '     11627'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2019/068
month: '06'
oa: 1
oa_version: Preprint
page: 157-180
place: Cham
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '682815'
  name: Teaching Old Crypto New Tricks
publication: Progress in Cryptology – AFRICACRYPT 2019
publication_identifier:
  eisbn:
  - 978-3-0302-3696-0
  eissn:
  - 1611-3349
  isbn:
  - 978-3-0302-3695-3
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Sampling the integers with low relative error
type: book_chapter
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 11627
year: '2019'
...
---
OA_place: publisher
OA_type: hybrid
_id: '6756'
abstract:
- lang: eng
  text: "We study the topology generated by the temperature fluctuations of the cosmic
    microwave background (CMB) radiation, as quantified by the number of components
    and holes, formally given by the Betti numbers, in the growing excursion sets.
    We compare CMB maps observed by the Planck satellite with a thousand simulated
    maps generated according to the ΛCDM paradigm with Gaussian distributed fluctuations.
    The comparison is multi-scale, being performed on a sequence of degraded maps
    with mean pixel separation ranging from 0.05 to 7.33°. The survey of the CMB over
    \U0001D54A2 is incomplete due to obfuscation effects by bright point sources and
    other extended foreground objects like our own galaxy. To deal with such situations,
    where analysis in the presence of “masks” is of importance, we introduce the concept
    of relative homology. The parametric χ2-test shows differences between observations
    and simulations, yielding p-values at percent to less than permil levels roughly
    between 2 and 7°, with the difference in the number of components and holes peaking
    at more than 3σ sporadically at these scales. The highest observed deviation between
    the observations and simulations for b0 and b1 is approximately between 3σ and
    4σ at scales of 3–7°. There are reports of mildly unusual behaviour of the Euler
    characteristic at 3.66° in the literature, computed from independent measurements
    of the CMB temperature fluctuations by Planck’s predecessor, the Wilkinson Microwave
    Anisotropy Probe (WMAP) satellite. The mildly anomalous behaviour of the Euler
    characteristic is phenomenologically related to the strongly anomalous behaviour
    of components and holes, or the zeroth and first Betti numbers, respectively.
    Further, since these topological descriptors show consistent anomalous behaviour
    over independent measurements of Planck and WMAP, instrumental and systematic
    errors may be an unlikely source. These are also the scales at which the observed
    maps exhibit low variance compared to the simulations, and approximately the range
    of scales at which the power spectrum exhibits a dip with respect to the theoretical
    model. Non-parametric tests show even stronger differences at almost all scales.
    Crucially, Gaussian simulations based on power-spectrum matching the characteristics
    of the observed dipped power spectrum are not able to resolve the anomaly. Understanding
    the origin of the anomalies in the CMB, whether cosmological in nature or arising
    due to late-time effects, is an extremely challenging task. Regardless, beyond
    the trivial possibility that this may still be a manifestation of an extreme Gaussian
    case, these observations, along with the super-horizon scales involved, may motivate
    the study of primordial non-Gaussianity. Alternative scenarios worth exploring
    may be models with non-trivial topology, including topological defect models."
acknowledgement: 'PP is grateful to Julian Borill from the Planck consortium for providing
  the data, and for the illuminating discussions and inputs. PP also thanks Hans Kristen
  Eriksen, Anne Ducout, and Francois R. Bouchet for significantly helpful discussions
  at various stages. The authors collectively thank the anonymous referee for the
  invaluable comments and suggestions that have added significant value to the contents
  of the manuscript. PP and RA acknowledge the support of ERC advanced grant Understanding
  Random Systems through Algebraic Topology (URSAT) (no: 320422, PI: RA). This work
  is also part of a project that has received funding for PP and TB from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  programme (grant agreement ERC advanced grant 740021– Advances in Research on THeories
  of the dark UniverSe (ARTHUS), PI: TB). HE and HW acknowledge the support by the
  Office of Naval Research, through grant N62909-18-1-2038, and by the DFG Collaborative
  Research Center TRR 109, “Discretization in Geometry and Dynamics”, through grant
  I02979-N35 of the Austrian Science Fund (FWF). PP acknowledges the support and use
  of resources at the NERSC computing center.'
article_number: A163
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Pratyush
  full_name: Pranav, Pratyush
  last_name: Pranav
- first_name: Robert J.
  full_name: Adler, Robert J.
  last_name: Adler
- first_name: Thomas
  full_name: Buchert, Thomas
  last_name: Buchert
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Bernard J.T.
  full_name: Jones, Bernard J.T.
  last_name: Jones
- first_name: Armin
  full_name: Schwartzman, Armin
  last_name: Schwartzman
- first_name: Hubert
  full_name: Wagner, Hubert
  id: 379CA8B8-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
- first_name: Rien
  full_name: Van De Weygaert, Rien
  last_name: Van De Weygaert
citation:
  ama: Pranav P, Adler RJ, Buchert T, et al. Unexpected topology of the temperature
    fluctuations in the cosmic microwave background. <i>Astronomy and Astrophysics</i>.
    2019;627. doi:<a href="https://doi.org/10.1051/0004-6361/201834916">10.1051/0004-6361/201834916</a>
  apa: Pranav, P., Adler, R. J., Buchert, T., Edelsbrunner, H., Jones, B. J. T., Schwartzman,
    A., … Van De Weygaert, R. (2019). Unexpected topology of the temperature fluctuations
    in the cosmic microwave background. <i>Astronomy and Astrophysics</i>. EDP Sciences.
    <a href="https://doi.org/10.1051/0004-6361/201834916">https://doi.org/10.1051/0004-6361/201834916</a>
  chicago: Pranav, Pratyush, Robert J. Adler, Thomas Buchert, Herbert Edelsbrunner,
    Bernard J.T. Jones, Armin Schwartzman, Hubert Wagner, and Rien Van De Weygaert.
    “Unexpected Topology of the Temperature Fluctuations in the Cosmic Microwave Background.”
    <i>Astronomy and Astrophysics</i>. EDP Sciences, 2019. <a href="https://doi.org/10.1051/0004-6361/201834916">https://doi.org/10.1051/0004-6361/201834916</a>.
  ieee: P. Pranav <i>et al.</i>, “Unexpected topology of the temperature fluctuations
    in the cosmic microwave background,” <i>Astronomy and Astrophysics</i>, vol. 627.
    EDP Sciences, 2019.
  ista: Pranav P, Adler RJ, Buchert T, Edelsbrunner H, Jones BJT, Schwartzman A, Wagner
    H, Van De Weygaert R. 2019. Unexpected topology of the temperature fluctuations
    in the cosmic microwave background. Astronomy and Astrophysics. 627, A163.
  mla: Pranav, Pratyush, et al. “Unexpected Topology of the Temperature Fluctuations
    in the Cosmic Microwave Background.” <i>Astronomy and Astrophysics</i>, vol. 627,
    A163, EDP Sciences, 2019, doi:<a href="https://doi.org/10.1051/0004-6361/201834916">10.1051/0004-6361/201834916</a>.
  short: P. Pranav, R.J. Adler, T. Buchert, H. Edelsbrunner, B.J.T. Jones, A. Schwartzman,
    H. Wagner, R. Van De Weygaert, Astronomy and Astrophysics 627 (2019).
date_created: 2019-08-04T21:59:18Z
date_published: 2019-07-17T00:00:00Z
date_updated: 2025-05-20T08:01:55Z
day: '17'
ddc:
- '520'
- '530'
department:
- _id: HeEd
doi: 10.1051/0004-6361/201834916
external_id:
  arxiv:
  - '1812.07678'
  isi:
  - '000475839300003'
file:
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  checksum: 83b9209ed9eefbdcefd89019c5a97805
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-05T08:08:59Z
  date_updated: 2020-07-14T12:47:39Z
  file_id: '6766'
  file_name: 2019_AstronomyAstrophysics_Pranav.pdf
  file_size: 14420451
  relation: main_file
file_date_updated: 2020-07-14T12:47:39Z
has_accepted_license: '1'
intvolume: '       627'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 265683E4-B435-11E9-9278-68D0E5697425
  grant_number: M62909-18-1-2038
  name: Toward Computational Information Topology
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Astronomy and Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unexpected topology of the temperature fluctuations in the cosmic microwave
  background
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 627
year: '2019'
...
---
_id: '6819'
abstract:
- lang: eng
  text: Glyphosate (N-phosphonomethyl glycine) and its commercial herbicide formulations
    have been shown to exert toxicity via various mechanisms. It has been asserted
    that glyphosate substitutes for glycine in polypeptide chains leading to protein
    misfolding and toxicity. However, as no direct evidence exists for glycine to
    glyphosate substitution in proteins, including in mammalian organisms, we tested
    this claim by conducting a proteomics analysis of MDA-MB-231 human breast cancer
    cells grown in the presence of 100 mg/L glyphosate for 6 days. Protein extracts
    from three treated and three untreated cell cultures were analysed as one TMT-6plex
    labelled sample, to highlight a specific pattern (+/+/+/−/−/−) of reporter intensities
    for peptides bearing true glyphosate treatment induced-post translational modifications
    as well as allowing an investigation of the total proteome.
article_number: '494'
article_processing_charge: No
author:
- first_name: Michael N.
  full_name: Antoniou, Michael N.
  last_name: Antoniou
- first_name: Armel
  full_name: Nicolas, Armel
  id: 2A103192-F248-11E8-B48F-1D18A9856A87
  last_name: Nicolas
- first_name: Robin
  full_name: Mesnage, Robin
  last_name: Mesnage
- first_name: Martina
  full_name: Biserni, Martina
  last_name: Biserni
- first_name: Francesco V.
  full_name: Rao, Francesco V.
  last_name: Rao
- first_name: Cristina Vazquez
  full_name: Martin, Cristina Vazquez
  last_name: Martin
citation:
  ama: Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. Glyphosate
    does not substitute for glycine in proteins of actively dividing mammalian cells.
    <i>BMC Research Notes</i>. 2019;12. doi:<a href="https://doi.org/10.1186/s13104-019-4534-3">10.1186/s13104-019-4534-3</a>
  apa: Antoniou, M. N., Nicolas, A., Mesnage, R., Biserni, M., Rao, F. V., &#38; Martin,
    C. V. (2019). Glyphosate does not substitute for glycine in proteins of actively
    dividing mammalian cells. <i>BMC Research Notes</i>. BioMed Central. <a href="https://doi.org/10.1186/s13104-019-4534-3">https://doi.org/10.1186/s13104-019-4534-3</a>
  chicago: Antoniou, Michael N., Armel Nicolas, Robin Mesnage, Martina Biserni, Francesco
    V. Rao, and Cristina Vazquez Martin. “Glyphosate Does Not Substitute for Glycine
    in Proteins of Actively Dividing Mammalian Cells.” <i>BMC Research Notes</i>.
    BioMed Central, 2019. <a href="https://doi.org/10.1186/s13104-019-4534-3">https://doi.org/10.1186/s13104-019-4534-3</a>.
  ieee: M. N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F. V. Rao, and C. V. Martin,
    “Glyphosate does not substitute for glycine in proteins of actively dividing mammalian
    cells,” <i>BMC Research Notes</i>, vol. 12. BioMed Central, 2019.
  ista: Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. 2019. Glyphosate
    does not substitute for glycine in proteins of actively dividing mammalian cells.
    BMC Research Notes. 12, 494.
  mla: Antoniou, Michael N., et al. “Glyphosate Does Not Substitute for Glycine in
    Proteins of Actively Dividing Mammalian Cells.” <i>BMC Research Notes</i>, vol.
    12, 494, BioMed Central, 2019, doi:<a href="https://doi.org/10.1186/s13104-019-4534-3">10.1186/s13104-019-4534-3</a>.
  short: M.N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F.V. Rao, C.V. Martin,
    BMC Research Notes 12 (2019).
date_created: 2019-08-18T22:00:39Z
date_published: 2019-08-08T00:00:00Z
date_updated: 2023-02-23T14:08:14Z
day: '08'
ddc:
- '570'
department:
- _id: LifeSc
doi: 10.1186/s13104-019-4534-3
external_id:
  pmid:
  - '31395095'
file:
- access_level: open_access
  checksum: 4a2bb7994b7f2c432bf44f5127ea3102
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-23T11:10:35Z
  date_updated: 2020-07-14T12:47:40Z
  file_id: '6829'
  file_name: 2019_BMC_Antoniou.pdf
  file_size: 1177482
  relation: main_file
file_date_updated: 2020-07-14T12:47:40Z
has_accepted_license: '1'
intvolume: '        12'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: BMC Research Notes
publication_identifier:
  eissn:
  - 1756-0500
publication_status: published
publisher: BioMed Central
quality_controlled: '1'
related_material:
  record:
  - id: '9784'
    relation: research_data
    status: public
scopus_import: 1
status: public
title: Glyphosate does not substitute for glycine in proteins of actively dividing
  mammalian cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2019'
...
---
_id: '6822'
abstract:
- lang: eng
  text: "In two-player games on graphs, the players move a token through a graph to
    produce an infinite path, which determines the qualitative winner or quantitative
    payoff of the game. In bidding games, in each turn, we hold an auction between
    the two players to determine which player moves the token. Bidding games have
    largely been studied with concrete bidding mechanisms that are variants of a first-price
    auction: in each turn both players simultaneously submit bids, the higher\r\nbidder
    moves the token, and pays his bid to the lower bidder in Richman bidding, to the
    bank in poorman bidding, and in taxman bidding, the bid is split between the other
    player and the bank according to a predefined constant factor. Bidding games are
    deterministic games. They have an intriguing connection with a fragment of stochastic
    games called \r\n randomturn games. We study, for the first time, a combination
    of bidding games with probabilistic behavior; namely, we study bidding games that
    are played on Markov decision processes, where the players bid for the right to
    choose the next action, which determines the probability distribution according
    to which the next vertex is chosen. We study parity and meanpayoff bidding games
    on MDPs and extend results from the deterministic bidding setting to the probabilistic
    one."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Guy
  full_name: Avni, Guy
  id: 463C8BC2-F248-11E8-B48F-1D18A9856A87
  last_name: Avni
  orcid: 0000-0001-5588-8287
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
- first_name: Petr
  full_name: Novotny, Petr
  last_name: Novotny
citation:
  ama: 'Avni G, Henzinger TA, Ibsen-Jensen R, Novotny P. Bidding games on Markov decision
    processes. In: <i> Proceedings of the 13th International Conference of Reachability
    Problems</i>. Vol 11674. Springer; 2019:1-12. doi:<a href="https://doi.org/10.1007/978-3-030-30806-3_1">10.1007/978-3-030-30806-3_1</a>'
  apa: 'Avni, G., Henzinger, T. A., Ibsen-Jensen, R., &#38; Novotny, P. (2019). Bidding
    games on Markov decision processes. In <i> Proceedings of the 13th International
    Conference of Reachability Problems</i> (Vol. 11674, pp. 1–12). Brussels, Belgium:
    Springer. <a href="https://doi.org/10.1007/978-3-030-30806-3_1">https://doi.org/10.1007/978-3-030-30806-3_1</a>'
  chicago: Avni, Guy, Thomas A Henzinger, Rasmus Ibsen-Jensen, and Petr Novotny. “Bidding
    Games on Markov Decision Processes.” In <i> Proceedings of the 13th International
    Conference of Reachability Problems</i>, 11674:1–12. Springer, 2019. <a href="https://doi.org/10.1007/978-3-030-30806-3_1">https://doi.org/10.1007/978-3-030-30806-3_1</a>.
  ieee: G. Avni, T. A. Henzinger, R. Ibsen-Jensen, and P. Novotny, “Bidding games
    on Markov decision processes,” in <i> Proceedings of the 13th International Conference
    of Reachability Problems</i>, Brussels, Belgium, 2019, vol. 11674, pp. 1–12.
  ista: 'Avni G, Henzinger TA, Ibsen-Jensen R, Novotny P. 2019. Bidding games on Markov
    decision processes.  Proceedings of the 13th International Conference of Reachability
    Problems. RP: Reachability Problems, LNCS, vol. 11674, 1–12.'
  mla: Avni, Guy, et al. “Bidding Games on Markov Decision Processes.” <i> Proceedings
    of the 13th International Conference of Reachability Problems</i>, vol. 11674,
    Springer, 2019, pp. 1–12, doi:<a href="https://doi.org/10.1007/978-3-030-30806-3_1">10.1007/978-3-030-30806-3_1</a>.
  short: G. Avni, T.A. Henzinger, R. Ibsen-Jensen, P. Novotny, in:,  Proceedings of
    the 13th International Conference of Reachability Problems, Springer, 2019, pp.
    1–12.
conference:
  end_date: 2019-09-13
  location: Brussels, Belgium
  name: 'RP: Reachability Problems'
  start_date: 2019-09-11
date_created: 2019-08-19T07:58:10Z
date_published: 2019-09-06T00:00:00Z
date_updated: 2025-09-10T10:39:56Z
day: '06'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-030-30806-3_1
external_id:
  isi:
  - '001333747500001'
file:
- access_level: open_access
  checksum: 45ebbc709af2b247d28c7c293c01504b
  content_type: application/pdf
  creator: gavni
  date_created: 2019-08-19T07:56:40Z
  date_updated: 2020-07-14T12:47:41Z
  file_id: '6823'
  file_name: prob.pdf
  file_size: 436635
  relation: main_file
file_date_updated: 2020-07-14T12:47:41Z
has_accepted_license: '1'
intvolume: '     11674'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 1-12
project:
- _id: 264B3912-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02369
  name: Formal Methods meets Algorithmic Game Theory
- _id: 25F2ACDE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
publication: ' Proceedings of the 13th International Conference of Reachability Problems'
publication_identifier:
  isbn:
  - 978-303030805-6
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bidding games on Markov decision processes
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 11674
year: '2019'
...
