---
OA_place: repository
OA_type: free access
_id: '21381'
abstract:
- lang: eng
  text: 'The lack of long-range electrostatics is a key limitation of modern machine
    learning interatomic potentials (MLIPs), hindering reliable applications to interfaces,
    charge-transfer reactions, polar and ionic materials, and biomolecules. In this
    Perspective, we distill two design principles behind the Latent Ewald Summation
    framework, which can capture long-range interactions, charges, and electrical
    response just by learning from standard energy and force training data: (i) use
    a Coulomb functional form with environment-dependent charges to capture electrostatic
    interactions, and (ii) avoid explicit training on ambiguous density functional
    theory partial charges. When both principles are satisfied, substantial flexibility
    remains: essentially any short-range MLIP can be augmented; charge equilibration
    schemes can be added when desired; dipoles and Born effective charges can be inferred
    or fine-tuned; and charge/spin-state embeddings or tensorial targets can be further
    incorporated. We also discuss current limitations and open challenges. Together,
    these minimal, physics-guided design rules suggest that incorporating long-range
    electrostatics into MLIPs is simpler and perhaps more broadly applicable than
    is commonly assumed.'
acknowledgement: "B.C. thanks Christoph Dellago for his mentorship and influence.
  In addition to his seminal contributions to statistical mechanics, Christoph Dellago
  is an early developer and adopter of machine learning interatomic potentials. B.C.
  did two exchanges in the groups of Christoph Dellago and Jörg Behler in 2018, with
  transformative impact on her research directions.\r\n\r\nWe thank Peichen Zhong
  and Daniel S. King for useful feedback on the manuscript and for the collaborations
  on the LES method.\r\n\r\nFunding acknowledgment: Research reported in this publication
  was supported by the National Institute Of General Medical Sciences of the National
  Institutes of Health under Award No. R35GM159986. The content is solely the responsibility
  of the authors and does not necessarily represent the official views of the National
  Institutes of Health."
article_number: '060901'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dongjin
  full_name: Kim, Dongjin
  last_name: Kim
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
citation:
  ama: Kim D, Cheng B. Long-range electrostatics for machine learning interatomic
    potentials is easier than we thought. <i>The Journal of Chemical Physics</i>.
    2026;164(6). doi:<a href="https://doi.org/10.1063/5.0316886">10.1063/5.0316886</a>
  apa: Kim, D., &#38; Cheng, B. (2026). Long-range electrostatics for machine learning
    interatomic potentials is easier than we thought. <i>The Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0316886">https://doi.org/10.1063/5.0316886</a>
  chicago: Kim, Dongjin, and Bingqing Cheng. “Long-Range Electrostatics for Machine
    Learning Interatomic Potentials Is Easier than We Thought.” <i>The Journal of
    Chemical Physics</i>. AIP Publishing, 2026. <a href="https://doi.org/10.1063/5.0316886">https://doi.org/10.1063/5.0316886</a>.
  ieee: D. Kim and B. Cheng, “Long-range electrostatics for machine learning interatomic
    potentials is easier than we thought,” <i>The Journal of Chemical Physics</i>,
    vol. 164, no. 6. AIP Publishing, 2026.
  ista: Kim D, Cheng B. 2026. Long-range electrostatics for machine learning interatomic
    potentials is easier than we thought. The Journal of Chemical Physics. 164(6),
    060901.
  mla: Kim, Dongjin, and Bingqing Cheng. “Long-Range Electrostatics for Machine Learning
    Interatomic Potentials Is Easier than We Thought.” <i>The Journal of Chemical
    Physics</i>, vol. 164, no. 6, 060901, AIP Publishing, 2026, doi:<a href="https://doi.org/10.1063/5.0316886">10.1063/5.0316886</a>.
  short: D. Kim, B. Cheng, The Journal of Chemical Physics 164 (2026).
corr_author: '1'
date_created: 2026-03-02T10:06:46Z
date_published: 2026-02-14T00:00:00Z
date_updated: 2026-03-02T14:46:24Z
day: '14'
department:
- _id: BiCh
doi: 10.1063/5.0316886
external_id:
  arxiv:
  - '2512.18029'
intvolume: '       164'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2512.18029
month: '02'
oa: 1
oa_version: Preprint
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Long-range electrostatics for machine learning interatomic potentials is easier
  than we thought
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 164
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21408'
abstract:
- lang: eng
  text: Rational design strategies for self-assembly require a detailed understanding
    of both the equilibrium state and the assembly kinetics. While the former is starting
    to be well understood, the latter remains a major theoretical challenge, especially
    in programmable systems and the so-called semi-addressable regime, where binding
    is often nondeterministic and the formation of off-target structures negatively
    influences the assembly. Here, we show that it is possible to simultaneously sculpt
    the assembly outcome and the assembly kinetics through the underexplored design
    space of binding energies and particle concentrations. By formulating the assembly
    process as a complex reaction network, we calculate and optimize the tradeoff
    between assembly speed and quality and show that parameter optimization can speed
    up assembly by many orders of magnitude without lowering the yield of the target
    structure. Although the exact speedup varies from design to design, we find the
    largest speedups for nondeterministic systems where unoptimized assembly is the
    slowest, sometimes even making them assemble faster than optimized, fully addressable
    designs. Therefore, these results not only solve a key challenge in semi-addressable
    self-assembly but further emphasize the utility of semi-addressability, where
    designs have the potential to be faster as well as cheaper (fewer particle species)
    and better (higher yield). More broadly, our results highlight the importance
    of parameter optimization in programmable self-assembly and provide practical
    tools for simultaneous optimization of kinetics and yield in a wide range of systems.
acknowledgement: The research was supported by the Gesellschaft für Forschungsförderung
  Niederösterreich under Project No. FTI23-G-011.
article_number: '084904'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Maximilian
  full_name: Hübl, Maximilian
  id: 5eb8629e-15b2-11ec-abd3-e6f3e5e01f32
  last_name: Hübl
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
citation:
  ama: Hübl M, Goodrich CP. Simultaneous optimization of assembly time and yield in
    programmable self-assembly. <i>Journal of Chemical Physics</i>. 2026;164(8). doi:<a
    href="https://doi.org/10.1063/5.0304731">10.1063/5.0304731</a>
  apa: Hübl, M., &#38; Goodrich, C. P. (2026). Simultaneous optimization of assembly
    time and yield in programmable self-assembly. <i>Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0304731">https://doi.org/10.1063/5.0304731</a>
  chicago: Hübl, Maximilian, and Carl Peter Goodrich. “Simultaneous Optimization of
    Assembly Time and Yield in Programmable Self-Assembly.” <i>Journal of Chemical
    Physics</i>. AIP Publishing, 2026. <a href="https://doi.org/10.1063/5.0304731">https://doi.org/10.1063/5.0304731</a>.
  ieee: M. Hübl and C. P. Goodrich, “Simultaneous optimization of assembly time and
    yield in programmable self-assembly,” <i>Journal of Chemical Physics</i>, vol.
    164, no. 8. AIP Publishing, 2026.
  ista: Hübl M, Goodrich CP. 2026. Simultaneous optimization of assembly time and
    yield in programmable self-assembly. Journal of Chemical Physics. 164(8), 084904.
  mla: Hübl, Maximilian, and Carl Peter Goodrich. “Simultaneous Optimization of Assembly
    Time and Yield in Programmable Self-Assembly.” <i>Journal of Chemical Physics</i>,
    vol. 164, no. 8, 084904, AIP Publishing, 2026, doi:<a href="https://doi.org/10.1063/5.0304731">10.1063/5.0304731</a>.
  short: M. Hübl, C.P. Goodrich, Journal of Chemical Physics 164 (2026).
corr_author: '1'
date_created: 2026-03-08T23:01:45Z
date_published: 2026-02-28T00:00:00Z
date_updated: 2026-03-09T10:40:41Z
day: '28'
ddc:
- '540'
department:
- _id: CaGo
- _id: GradSch
doi: 10.1063/5.0304731
external_id:
  arxiv:
  - '2510.07876'
file:
- access_level: open_access
  checksum: 9bdb8870930e83edb973408da3038559
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-09T10:38:55Z
  date_updated: 2026-03-09T10:38:55Z
  file_id: '21415'
  file_name: 2026_JourChemPhysics_Huebl.pdf
  file_size: 6903766
  relation: main_file
  success: 1
file_date_updated: 2026-03-09T10:38:55Z
has_accepted_license: '1'
intvolume: '       164'
issue: '8'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 8dd93da8-16d5-11f0-9cad-d2c70200d9a5
  grant_number: FTI23-G-011
  name: Dynamically reconfigurable self-assembly with triangular DNA-origami bricks
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Simultaneous optimization of assembly time and yield in programmable self-assembly
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 164
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21840'
abstract:
- lang: eng
  text: The transport properties of nanofluidic channels are usually studied under
    constant (DC) voltage or pressure driving. However, the frequency response under
    sinusoidal (AC) drivings offers rich insights into the time-dependent transport
    mechanisms. Inspired by recent electrochemical approaches, we investigate the
    couplings between ionic and electronic transport under AC driving. We show that
    conduction electrons of the channel walls participate in ionic current via capacitive
    electrochemical coupling, defining a critical frequency and length scale where
    electron-dominated conductivity emerges. We further analyze how electron–ion coupling
    modifies electro-osmotic flows and demonstrate that fluctuation-induced momentum
    transfer between the electrolyte and wall electrons produces distinct AC transport
    signatures, depending on the charge carrier polarity. Altogether, we establish
    a frequency-dependent transport matrix that couples ionic, electronic, and hydrodynamic
    flows. These findings establish AC nanofluidic transport as a powerful probe of
    interfacial phenomena under confinement and suggest new directions for engineering
    nanofluidic functionalities through electron–electrolyte coupling.
acknowledgement: The authors thank Nicolas Chapuis for fruitful discussions. L.B.
  acknowledges support from the ERC project n-AQUA under Grant Agreement No. 101071937.
  B.C. acknowledges support from the CFM Foundation and the NOMIS Foundation. N.K.
  acknowledges support from the Swiss National Science Foundation (SNSF) under Grant
  No. CRSK-2_237930.
article_number: '134704'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Baptiste
  full_name: Coquinot, Baptiste
  id: f8417bd4-f599-11ee-a482-b927e3ed1e8e
  last_name: Coquinot
  orcid: 0000-0001-5524-596X
- first_name: Mathieu
  full_name: Lizée, Mathieu
  last_name: Lizée
- first_name: Lydéric
  full_name: Bocquet, Lydéric
  last_name: Bocquet
- first_name: Nikita
  full_name: Kavokine, Nikita
  last_name: Kavokine
citation:
  ama: Coquinot B, Lizée M, Bocquet L, Kavokine N. Electron–electrolyte coupling in
    AC transport through nanofluidic channels. <i>The Journal of Chemical Physics</i>.
    2026;164(13). doi:<a href="https://doi.org/10.1063/5.0313352">10.1063/5.0313352</a>
  apa: Coquinot, B., Lizée, M., Bocquet, L., &#38; Kavokine, N. (2026). Electron–electrolyte
    coupling in AC transport through nanofluidic channels. <i>The Journal of Chemical
    Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/5.0313352">https://doi.org/10.1063/5.0313352</a>
  chicago: Coquinot, Baptiste, Mathieu Lizée, Lydéric Bocquet, and Nikita Kavokine.
    “Electron–Electrolyte Coupling in AC Transport through Nanofluidic Channels.”
    <i>The Journal of Chemical Physics</i>. AIP Publishing, 2026. <a href="https://doi.org/10.1063/5.0313352">https://doi.org/10.1063/5.0313352</a>.
  ieee: B. Coquinot, M. Lizée, L. Bocquet, and N. Kavokine, “Electron–electrolyte
    coupling in AC transport through nanofluidic channels,” <i>The Journal of Chemical
    Physics</i>, vol. 164, no. 13. AIP Publishing, 2026.
  ista: Coquinot B, Lizée M, Bocquet L, Kavokine N. 2026. Electron–electrolyte coupling
    in AC transport through nanofluidic channels. The Journal of Chemical Physics.
    164(13), 134704.
  mla: Coquinot, Baptiste, et al. “Electron–Electrolyte Coupling in AC Transport through
    Nanofluidic Channels.” <i>The Journal of Chemical Physics</i>, vol. 164, no. 13,
    134704, AIP Publishing, 2026, doi:<a href="https://doi.org/10.1063/5.0313352">10.1063/5.0313352</a>.
  short: B. Coquinot, M. Lizée, L. Bocquet, N. Kavokine, The Journal of Chemical Physics
    164 (2026).
date_created: 2026-05-07T08:53:03Z
date_published: 2026-04-07T00:00:00Z
date_updated: 2026-05-18T07:34:57Z
day: '07'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1063/5.0313352
external_id:
  arxiv:
  - '2505.02478'
file:
- access_level: open_access
  checksum: a896969c829be2a79859bd277f87b44c
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-18T07:31:23Z
  date_updated: 2026-05-18T07:31:23Z
  file_id: '21889'
  file_name: 2026_JourChemPhysics_Coquinot.pdf
  file_size: 5497515
  relation: main_file
  success: 1
file_date_updated: 2026-05-18T07:31:23Z
has_accepted_license: '1'
intvolume: '       164'
issue: '13'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Electron–electrolyte coupling in AC transport through nanofluidic channels
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 164
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19880'
abstract:
- lang: eng
  text: We investigate quantum transport in a two-dimensional electron system coupled
    to a chiral molecular potential, demonstrating how molecular chirality and orientation
    affect charge and spin transport properties. We propose a minimal model for realizing
    true chiral symmetry breaking on a magnetized surface, with a crucial role played
    by the tilt angle of the molecular dipole with respect to the surface. For non-zero
    tilting, we show that the Hall response exhibits clear signatures of chirality-induced
    effects, in both charge- and spin-resolved observables. Concerning the former,
    tilted enantiomers produce asymmetric Hall conductances and, even more remarkably,
    the persistence of this feature in the absence of spin–orbit coupling (SOC) signals
    how the enantiospecific charge response results from electron scattering off the
    molecular potential. Concerning spin-resolved observables where SOC plays a relevant
    role, we reveal that chiral symmetry breaking is crucial in enabling spin-flipping
    processes.
acknowledgement: We thank Artem Volosniev, Narcis Avarvari, Georgios Koutentakis,
  Sandro Wimberger, and Binghai Yan for useful discussions. R.A. received funding
  from the Austrian Academy of Science ÖWA, Grant No. PR1029OEAW03. M.L. acknowledges
  support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON).
  A.C. received funding from the European Union’s Horizon Europe research and innovation
  program under the Marie Skłodowska-Curie Grant Agreement No. 101062862-NeqMolRot.
article_number: '234106'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Ragheed
  full_name: Al Hyder, Ragheed
  id: d1c405be-ae15-11ed-8510-ccf53278162e
  last_name: Al Hyder
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Alberto
  full_name: Cappellaro, Alberto
  id: 9d13b3cb-30a2-11eb-80dc-f772505e8660
  last_name: Cappellaro
  orcid: 0000-0001-6110-2359
citation:
  ama: Al Hyder R, Lemeshko M, Cappellaro A. Quantum transport in the presence of
    a chiral molecular potential. <i>The Journal of Chemical Physics</i>. 2025;162(23).
    doi:<a href="https://doi.org/10.1063/5.0271155">10.1063/5.0271155</a>
  apa: Al Hyder, R., Lemeshko, M., &#38; Cappellaro, A. (2025). Quantum transport
    in the presence of a chiral molecular potential. <i>The Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0271155">https://doi.org/10.1063/5.0271155</a>
  chicago: Al Hyder, Ragheed, Mikhail Lemeshko, and Alberto Cappellaro. “Quantum Transport
    in the Presence of a Chiral Molecular Potential.” <i>The Journal of Chemical Physics</i>.
    AIP Publishing, 2025. <a href="https://doi.org/10.1063/5.0271155">https://doi.org/10.1063/5.0271155</a>.
  ieee: R. Al Hyder, M. Lemeshko, and A. Cappellaro, “Quantum transport in the presence
    of a chiral molecular potential,” <i>The Journal of Chemical Physics</i>, vol.
    162, no. 23. AIP Publishing, 2025.
  ista: Al Hyder R, Lemeshko M, Cappellaro A. 2025. Quantum transport in the presence
    of a chiral molecular potential. The Journal of Chemical Physics. 162(23), 234106.
  mla: Al Hyder, Ragheed, et al. “Quantum Transport in the Presence of a Chiral Molecular
    Potential.” <i>The Journal of Chemical Physics</i>, vol. 162, no. 23, 234106,
    AIP Publishing, 2025, doi:<a href="https://doi.org/10.1063/5.0271155">10.1063/5.0271155</a>.
  short: R. Al Hyder, M. Lemeshko, A. Cappellaro, The Journal of Chemical Physics
    162 (2025).
corr_author: '1'
date_created: 2025-06-23T13:55:28Z
date_published: 2025-06-21T00:00:00Z
date_updated: 2025-09-30T13:40:55Z
day: '21'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1063/5.0271155
ec_funded: 1
external_id:
  arxiv:
  - '2503.14124'
  isi:
  - '001512872900010'
  pmid:
  - '40526561'
file:
- access_level: open_access
  checksum: e278631d949657baa9d5309dad5f4b77
  content_type: application/pdf
  creator: dernst
  date_created: 2025-06-23T14:03:30Z
  date_updated: 2025-06-23T14:03:30Z
  file_id: '19881'
  file_name: 2025_JourChemicalPhysics_AlHyder.pdf
  file_size: 7202681
  relation: main_file
  success: 1
file_date_updated: 2025-06-23T14:03:30Z
has_accepted_license: '1'
intvolume: '       162'
isi: 1
issue: '23'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
- _id: bd7b5202-d553-11ed-ba76-9b1c1b258338
  grant_number: '101062862'
  name: Non-Equilibrium Field Theory of Molecular Rotations
- _id: 8fa7db46-16d5-11f0-9cad-917600954daf
  grant_number: '12078'
  name: Polarons in Lead Halide Perovskites
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum transport in the presence of a chiral molecular potential
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 162
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19276'
abstract:
- lang: eng
  text: Impurity motion in a many-body environment has been a central issue in the
    field of low-temperature physics for decades. In bosonic quantum fluids, the onset
    of a drag force experienced by point-like objects is due to collective environment
    excitations, driven by the exchange of linear momentum between the impurity and
    the many-body bath. In this work we consider a rotating impurity, with the aim
    of exploring how angular momentum is exchanged with the surrounding bosonic environment.
    In order to elucidate these issues, we employ a quasiparticle approach based on
    the angulon theory, which allows us to effectively deal with the non-trivial algebra
    of quantized angular momentum in the presence of a many-body environment. We uncover
    how impurity dressing by environmental excitations can establish an exchange channel,
    whose effectiveness crucially depends on the initial state of the impurity. Remarkably,
    we find that there is a critical value of initial angular momentum, above which
    this channel effectively freezes.
acknowledgement: We acknowledge Henrik Stapelfeldt for enlightening discussions. M.L.
  acknowledges support by the European Research Council (ERC) Starting Grant No. 801770
  (ANGULON). A.C. received funding from the European Union’s Horizon Europe research
  and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 101062862—NeqMolRot.
article_number: '074104'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Alberto
  full_name: Cappellaro, Alberto
  id: 9d13b3cb-30a2-11eb-80dc-f772505e8660
  last_name: Cappellaro
  orcid: 0000-0001-6110-2359
- first_name: Giacomo
  full_name: Bighin, Giacomo
  id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
  last_name: Bighin
  orcid: 0000-0001-8823-9777
- first_name: Igor
  full_name: Cherepanov, Igor
  id: 339C7E5A-F248-11E8-B48F-1D18A9856A87
  last_name: Cherepanov
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: Cappellaro A, Bighin G, Cherepanov I, Lemeshko M. Environment-limited transfer
    of angular momentum in Bose liquids. <i>Journal of Chemical Physics</i>. 2025;162(7).
    doi:<a href="https://doi.org/10.1063/5.0253451">10.1063/5.0253451</a>
  apa: Cappellaro, A., Bighin, G., Cherepanov, I., &#38; Lemeshko, M. (2025). Environment-limited
    transfer of angular momentum in Bose liquids. <i>Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0253451">https://doi.org/10.1063/5.0253451</a>
  chicago: Cappellaro, Alberto, Giacomo Bighin, Igor Cherepanov, and Mikhail Lemeshko.
    “Environment-Limited Transfer of Angular Momentum in Bose Liquids.” <i>Journal
    of Chemical Physics</i>. AIP Publishing, 2025. <a href="https://doi.org/10.1063/5.0253451">https://doi.org/10.1063/5.0253451</a>.
  ieee: A. Cappellaro, G. Bighin, I. Cherepanov, and M. Lemeshko, “Environment-limited
    transfer of angular momentum in Bose liquids,” <i>Journal of Chemical Physics</i>,
    vol. 162, no. 7. AIP Publishing, 2025.
  ista: Cappellaro A, Bighin G, Cherepanov I, Lemeshko M. 2025. Environment-limited
    transfer of angular momentum in Bose liquids. Journal of Chemical Physics. 162(7),
    074104.
  mla: Cappellaro, Alberto, et al. “Environment-Limited Transfer of Angular Momentum
    in Bose Liquids.” <i>Journal of Chemical Physics</i>, vol. 162, no. 7, 074104,
    AIP Publishing, 2025, doi:<a href="https://doi.org/10.1063/5.0253451">10.1063/5.0253451</a>.
  short: A. Cappellaro, G. Bighin, I. Cherepanov, M. Lemeshko, Journal of Chemical
    Physics 162 (2025).
corr_author: '1'
date_created: 2025-03-02T23:01:51Z
date_published: 2025-02-21T00:00:00Z
date_updated: 2026-01-20T10:11:27Z
day: '21'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1063/5.0253451
ec_funded: 1
external_id:
  arxiv:
  - '2501.16066'
  isi:
  - '001427233100008'
  pmid:
  - '39964008'
file:
- access_level: open_access
  checksum: c67c37788a949af9f0f45b22a27f8087
  content_type: application/pdf
  creator: dernst
  date_created: 2025-03-04T10:48:03Z
  date_updated: 2025-03-04T10:48:03Z
  file_id: '19292'
  file_name: 2025_JourChemicalPhysics_Cappellaro.pdf
  file_size: 6455134
  relation: main_file
  success: 1
file_date_updated: 2025-03-04T10:48:03Z
has_accepted_license: '1'
intvolume: '       162'
isi: 1
issue: '7'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
- _id: bd7b5202-d553-11ed-ba76-9b1c1b258338
  grant_number: '101062862'
  name: Non-Equilibrium Field Theory of Molecular Rotations
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Environment-limited transfer of angular momentum in Bose liquids
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 162
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19279'
abstract:
- lang: eng
  text: Recent experimental advances in nanofluidics have allowed to explore ion transport
    across molecular-scale pores, in particular, for iontronic applications. Two-dimensional
    nanochannels—in which a single molecular layer of electrolyte is confined between
    solid walls—constitute a unique platform to investigate fluid and ion transport
    in extreme confinement, highlighting unconventional transport properties. In this
    work, we study ionic association in 2D nanochannels, and its consequences on non-linear
    ionic transport, using both molecular dynamics simulations and analytical theory.
    We show that under sufficient confinement, ions assemble into pairs or larger
    clusters in a process analogous to a Kosterlitz–Thouless transition, here modified
    by the dielectric confinement. We further show that the breaking of pairs results
    in an electric-field dependent conduction, a mechanism usually known as the second
    Wien effect. However the 2D nature of the system results in non-universal, temperature-dependent,
    scaling of the conductivity with electric field, leading to ionic coulomb blockade
    in some regimes. A 2D generalization of the Onsager theory fully accounts for
    the non-linear transport. These results suggest ways to exploit electrostatic
    interactions between ions to build new nanofluidic devices.
acknowledgement: The authors thank B. Coquinot and G. Monet for fruitful discussions.
  L.B. acknowledges support from ERC-Synergy Grant Agreement No. 101071937, n-AQUA.
  P.R. acknowledges support from the European Union’s Horizon 2020 research and innovation
  program under Marie Sklodowska-Curie Grant Agreement No. 101034413.
article_number: '064703'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Damien
  full_name: Toquer, Damien
  last_name: Toquer
- first_name: Lydéric
  full_name: Bocquet, Lydéric
  last_name: Bocquet
- first_name: Paul
  full_name: Robin, Paul
  id: 48c58128-57b0-11ee-9095-dc28fd97fc1d
  last_name: Robin
  orcid: 0000-0002-5728-9189
citation:
  ama: Toquer D, Bocquet L, Robin P. Ionic association and Wien effect in 2D confined
    electrolytes. <i>Journal of Chemical Physics</i>. 2025;162(6). doi:<a href="https://doi.org/10.1063/5.0241949">10.1063/5.0241949</a>
  apa: Toquer, D., Bocquet, L., &#38; Robin, P. (2025). Ionic association and Wien
    effect in 2D confined electrolytes. <i>Journal of Chemical Physics</i>. AIP Publishing.
    <a href="https://doi.org/10.1063/5.0241949">https://doi.org/10.1063/5.0241949</a>
  chicago: Toquer, Damien, Lydéric Bocquet, and Paul Robin. “Ionic Association and
    Wien Effect in 2D Confined Electrolytes.” <i>Journal of Chemical Physics</i>.
    AIP Publishing, 2025. <a href="https://doi.org/10.1063/5.0241949">https://doi.org/10.1063/5.0241949</a>.
  ieee: D. Toquer, L. Bocquet, and P. Robin, “Ionic association and Wien effect in
    2D confined electrolytes,” <i>Journal of Chemical Physics</i>, vol. 162, no. 6.
    AIP Publishing, 2025.
  ista: Toquer D, Bocquet L, Robin P. 2025. Ionic association and Wien effect in 2D
    confined electrolytes. Journal of Chemical Physics. 162(6), 064703.
  mla: Toquer, Damien, et al. “Ionic Association and Wien Effect in 2D Confined Electrolytes.”
    <i>Journal of Chemical Physics</i>, vol. 162, no. 6, 064703, AIP Publishing, 2025,
    doi:<a href="https://doi.org/10.1063/5.0241949">10.1063/5.0241949</a>.
  short: D. Toquer, L. Bocquet, P. Robin, Journal of Chemical Physics 162 (2025).
corr_author: '1'
date_created: 2025-03-02T23:01:52Z
date_published: 2025-02-14T00:00:00Z
date_updated: 2025-09-30T10:44:48Z
day: '14'
ddc:
- '540'
department:
- _id: EdHa
doi: 10.1063/5.0241949
ec_funded: 1
external_id:
  arxiv:
  - '2410.03316'
  isi:
  - '001421300300001'
  pmid:
  - '39932241'
file:
- access_level: open_access
  checksum: c9008c2c50c917673aa588f75acbcb40
  content_type: application/pdf
  creator: dernst
  date_created: 2025-03-04T10:29:36Z
  date_updated: 2025-03-04T10:29:36Z
  file_id: '19290'
  file_name: 2025_JourChemicalPhysics_Toquer.pdf
  file_size: 5807062
  relation: main_file
  success: 1
file_date_updated: 2025-03-04T10:29:36Z
has_accepted_license: '1'
intvolume: '       162'
isi: 1
issue: '6'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ionic association and Wien effect in 2D confined electrolytes
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 162
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19595'
abstract:
- lang: eng
  text: We investigate the locality of magnetic response in polycyclic aromatic molecules
    using a novel deep-learning approach. Our method employs graph neural networks
    (GNNs) with a graph-of-rings representation to predict nucleus independent chemical
    shifts (NICS) in the space around the molecule. We train a series of models, each
    time reducing the size of the largest molecules used in training. The accuracy
    of prediction remains high (MAE < 0.5 ppm), even when training the model only
    on molecules with up to four rings, thus providing strong evidence for the locality
    of magnetic response. To overcome the known problem of generalization of GNNs,
    we implement a k-hop expansion strategy and succeed in achieving accurate predictions
    for molecules with up to 15 rings (almost 4 times the size of the largest training
    example). Our findings have implications for understanding the magnetic response
    in complex molecules and demonstrate a promising approach to overcoming GNN scalability
    limitations. Furthermore, the trained models enable rapid characterization, without
    the need for more expensive DFT calculations.
acknowledgement: The authors express their gratitude to Professor Dr. Peter Chen for
  his continued support. The authors acknowledge the Branco Weiss Fellowship for supporting
  this research as part of a Society in Science grant and the Israel Science Foundation
  for financial support (Grant No. 1745/23 to R.G.-P.). R.G.-P. is a Branco Weiss
  Fellow, a Horev Fellow, and an Alon Scholarship recipient. A.M.B. was supported
  by the ERC StG EARS and the Israeli Science Foundation.
article_number: '144101'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Yair
  full_name: Davidson, Yair
  last_name: Davidson
- first_name: Aviad
  full_name: Philipp, Aviad
  last_name: Philipp
- first_name: Sabyasachi
  full_name: Chakraborty, Sabyasachi
  last_name: Chakraborty
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Renana
  full_name: Gershoni-Poranne, Renana
  last_name: Gershoni-Poranne
citation:
  ama: Davidson Y, Philipp A, Chakraborty S, Bronstein AM, Gershoni-Poranne R. How
    local is “local”? Deep learning reveals locality of the induced magnetic field
    of polycyclic aromatic hydrocarbons. <i>Journal of Chemical Physics</i>. 2025;162(14).
    doi:<a href="https://doi.org/10.1063/5.0257558">10.1063/5.0257558</a>
  apa: Davidson, Y., Philipp, A., Chakraborty, S., Bronstein, A. M., &#38; Gershoni-Poranne,
    R. (2025). How local is “local”? Deep learning reveals locality of the induced
    magnetic field of polycyclic aromatic hydrocarbons. <i>Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0257558">https://doi.org/10.1063/5.0257558</a>
  chicago: Davidson, Yair, Aviad Philipp, Sabyasachi Chakraborty, Alex M. Bronstein,
    and Renana Gershoni-Poranne. “How Local Is ‘Local’? Deep Learning Reveals Locality
    of the Induced Magnetic Field of Polycyclic Aromatic Hydrocarbons.” <i>Journal
    of Chemical Physics</i>. AIP Publishing, 2025. <a href="https://doi.org/10.1063/5.0257558">https://doi.org/10.1063/5.0257558</a>.
  ieee: Y. Davidson, A. Philipp, S. Chakraborty, A. M. Bronstein, and R. Gershoni-Poranne,
    “How local is ‘local’? Deep learning reveals locality of the induced magnetic
    field of polycyclic aromatic hydrocarbons,” <i>Journal of Chemical Physics</i>,
    vol. 162, no. 14. AIP Publishing, 2025.
  ista: Davidson Y, Philipp A, Chakraborty S, Bronstein AM, Gershoni-Poranne R. 2025.
    How local is “local”? Deep learning reveals locality of the induced magnetic field
    of polycyclic aromatic hydrocarbons. Journal of Chemical Physics. 162(14), 144101.
  mla: Davidson, Yair, et al. “How Local Is ‘Local’? Deep Learning Reveals Locality
    of the Induced Magnetic Field of Polycyclic Aromatic Hydrocarbons.” <i>Journal
    of Chemical Physics</i>, vol. 162, no. 14, 144101, AIP Publishing, 2025, doi:<a
    href="https://doi.org/10.1063/5.0257558">10.1063/5.0257558</a>.
  short: Y. Davidson, A. Philipp, S. Chakraborty, A.M. Bronstein, R. Gershoni-Poranne,
    Journal of Chemical Physics 162 (2025).
corr_author: '1'
date_created: 2025-04-20T22:01:28Z
date_published: 2025-04-14T00:00:00Z
date_updated: 2025-09-30T12:06:51Z
day: '14'
ddc:
- '000'
department:
- _id: AlBr
doi: 10.1063/5.0257558
external_id:
  isi:
  - '001466311300030'
  pmid:
  - '40197568'
file:
- access_level: open_access
  checksum: 20a31a4c506b52de863bab7d3ff989ef
  content_type: application/pdf
  creator: dernst
  date_created: 2025-04-22T09:27:43Z
  date_updated: 2025-04-22T09:27:43Z
  file_id: '19606'
  file_name: 2025_JourChemicalPhysics_Davidson.pdf
  file_size: 7812182
  relation: main_file
  success: 1
file_date_updated: 2025-04-22T09:27:43Z
has_accepted_license: '1'
intvolume: '       162'
isi: 1
issue: '14'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 92f4a086-16d5-11f0-9cad-c929f5c58b0c
  grant_number: '863839'
  name: Acoustics-based drone navigation and interaction
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://gitlab.com/porannegroup/magnetic_locality
scopus_import: '1'
status: public
title: How local is “local”? Deep learning reveals locality of the induced magnetic
  field of polycyclic aromatic hydrocarbons
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 162
year: '2025'
...
---
_id: '15024'
abstract:
- lang: eng
  text: Electrostatic correlations between ions dissolved in water are known to impact
    their transport properties in numerous ways, from conductivity to ion selectivity.
    The effects of these correlations on the solvent itself remain, however, much
    less clear. In particular, the addition of salt has been consistently reported
    to affect the solution’s viscosity, but most modeling attempts fail to reproduce
    experimental data even at moderate salt concentrations. Here, we use an approach
    based on stochastic density functional theory, which accurately captures charge
    fluctuations and correlations. We derive a simple analytical expression for the
    viscosity correction in concentrated electrolytes, by directly linking it to the
    liquid’s structure factor. Our prediction compares quantitatively to experimental
    data at all temperatures and all salt concentrations up to the saturation limit.
    This universal link between the microscopic structure and viscosity allows us
    to shed light on the nanoscale dynamics of water and ions under highly concentrated
    and correlated conditions.
acknowledgement: The author thanks Lydéric Bocquet, Baptiste Coquinot, and Mathieu
  Lizée for fruitful discussions. This project received funding from the European
  Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie
  Grant Agreement No. 101034413.
article_number: '064503'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Paul
  full_name: Robin, Paul
  id: 48c58128-57b0-11ee-9095-dc28fd97fc1d
  last_name: Robin
  orcid: 0000-0002-5728-9189
citation:
  ama: Robin P. Correlation-induced viscous dissipation in concentrated electrolytes.
    <i>Journal of Chemical Physics</i>. 2024;160(6). doi:<a href="https://doi.org/10.1063/5.0188215">10.1063/5.0188215</a>
  apa: Robin, P. (2024). Correlation-induced viscous dissipation in concentrated electrolytes.
    <i>Journal of Chemical Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/5.0188215">https://doi.org/10.1063/5.0188215</a>
  chicago: Robin, Paul. “Correlation-Induced Viscous Dissipation in Concentrated Electrolytes.”
    <i>Journal of Chemical Physics</i>. AIP Publishing, 2024. <a href="https://doi.org/10.1063/5.0188215">https://doi.org/10.1063/5.0188215</a>.
  ieee: P. Robin, “Correlation-induced viscous dissipation in concentrated electrolytes,”
    <i>Journal of Chemical Physics</i>, vol. 160, no. 6. AIP Publishing, 2024.
  ista: Robin P. 2024. Correlation-induced viscous dissipation in concentrated electrolytes.
    Journal of Chemical Physics. 160(6), 064503.
  mla: Robin, Paul. “Correlation-Induced Viscous Dissipation in Concentrated Electrolytes.”
    <i>Journal of Chemical Physics</i>, vol. 160, no. 6, 064503, AIP Publishing, 2024,
    doi:<a href="https://doi.org/10.1063/5.0188215">10.1063/5.0188215</a>.
  short: P. Robin, Journal of Chemical Physics 160 (2024).
corr_author: '1'
date_created: 2024-02-25T23:00:55Z
date_published: 2024-02-14T00:00:00Z
date_updated: 2025-09-04T12:07:33Z
day: '14'
ddc:
- '540'
department:
- _id: EdHa
doi: 10.1063/5.0188215
ec_funded: 1
external_id:
  arxiv:
  - '2311.11784'
  isi:
  - '001161104900003'
  pmid:
  - '38349632'
file:
- access_level: open_access
  checksum: 0a5e0ae70849bce674466fc054390ec0
  content_type: application/pdf
  creator: dernst
  date_created: 2024-02-27T08:12:52Z
  date_updated: 2024-02-27T08:12:52Z
  file_id: '15034'
  file_name: 2024_JourChemicalPhysics_Robin.pdf
  file_size: 5452738
  relation: main_file
  success: 1
file_date_updated: 2024-02-27T08:12:52Z
has_accepted_license: '1'
intvolume: '       160'
isi: 1
issue: '6'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Correlation-induced viscous dissipation in concentrated electrolytes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 160
year: '2024'
...
---
_id: '17278'
abstract:
- lang: eng
  text: An azeotrope is a constant boiling point mixture, and its behavior is important
    for fluid separation processes. Predicting azeotropes from atomistic simulations
    is difficult due to the complexities and convergence problems of Monte Carlo and
    free-energy perturbation techniques. Here, we present a methodology for predicting
    the azeotropes of binary mixtures, which computes the compositional dependence
    of chemical potentials from molecular dynamics simulations using the S0 method
    and employs experimental boiling point and vaporization enthalpy data. Using this
    methodology, we reproduce the azeotropes, or lack thereof, in five case studies,
    including ethanol/water, ethanol/isooctane, methanol/water, hydrazine/water, and
    acetone/chloroform mixtures. We find that it is crucial to use the experimental
    boiling point and vaporization enthalpy for reliable azeotrope predictions, as
    empirical force fields are not accurate enough for these quantities. Finally,
    we use regular solution models to rationalize the azeotropes and reveal that they
    tend to form when the mixture components have similar boiling points and strong
    interactions.
acknowledgement: B.C. thanks Alessandro Laio, who introduced the phenomenon of azeotrope
  and suggested using the S0 method to compute it. B.C. and X.W. thank Felix Wodaczek
  for the insightful comments and suggestions on the manuscript. B.C. and X.W. acknowledge
  the resources provided by the Cambridge Tier-2 system operated by the University
  of Cambridge Research Computing Service, funded by EPSRC Tier-2 capital (Grant No.
  EP/P020259/1).
article_number: '034111'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Xiaoyu
  full_name: Wang, Xiaoyu
  id: 8dff9c62-32b0-11ee-9fa8-fc73025e10f3
  last_name: Wang
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
citation:
  ama: Wang X, Cheng B. Integrating molecular dynamics simulations and experimental
    data for azeotrope predictions in binary mixtures. <i>Journal of Chemical Physics</i>.
    2024;161(3). doi:<a href="https://doi.org/10.1063/5.0217232">10.1063/5.0217232</a>
  apa: Wang, X., &#38; Cheng, B. (2024). Integrating molecular dynamics simulations
    and experimental data for azeotrope predictions in binary mixtures. <i>Journal
    of Chemical Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/5.0217232">https://doi.org/10.1063/5.0217232</a>
  chicago: Wang, Xiaoyu, and Bingqing Cheng. “Integrating Molecular Dynamics Simulations
    and Experimental Data for Azeotrope Predictions in Binary Mixtures.” <i>Journal
    of Chemical Physics</i>. AIP Publishing, 2024. <a href="https://doi.org/10.1063/5.0217232">https://doi.org/10.1063/5.0217232</a>.
  ieee: X. Wang and B. Cheng, “Integrating molecular dynamics simulations and experimental
    data for azeotrope predictions in binary mixtures,” <i>Journal of Chemical Physics</i>,
    vol. 161, no. 3. AIP Publishing, 2024.
  ista: Wang X, Cheng B. 2024. Integrating molecular dynamics simulations and experimental
    data for azeotrope predictions in binary mixtures. Journal of Chemical Physics.
    161(3), 034111.
  mla: Wang, Xiaoyu, and Bingqing Cheng. “Integrating Molecular Dynamics Simulations
    and Experimental Data for Azeotrope Predictions in Binary Mixtures.” <i>Journal
    of Chemical Physics</i>, vol. 161, no. 3, 034111, AIP Publishing, 2024, doi:<a
    href="https://doi.org/10.1063/5.0217232">10.1063/5.0217232</a>.
  short: X. Wang, B. Cheng, Journal of Chemical Physics 161 (2024).
corr_author: '1'
date_created: 2024-07-21T22:01:00Z
date_published: 2024-07-14T00:00:00Z
date_updated: 2025-09-08T08:26:09Z
day: '14'
department:
- _id: BiCh
- _id: GradSch
doi: 10.1063/5.0217232
external_id:
  arxiv:
  - '2405.02216'
  isi:
  - '001281819100016'
  pmid:
  - '39007379'
intvolume: '       161'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2405.02216
month: '07'
oa: 1
oa_version: Preprint
pmid: 1
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/Xiaoyu-Wang-Stone/Azeotrope_S0
scopus_import: '1'
status: public
title: Integrating molecular dynamics simulations and experimental data for azeotrope
  predictions in binary mixtures
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 161
year: '2024'
...
---
_id: '14321'
abstract:
- lang: eng
  text: We demonstrate the possibility of a coupling between the magnetization direction
    of a ferromagnet and the tilting angle of adsorbed achiral molecules. To illustrate
    the mechanism of the coupling, we analyze a minimal Stoner model that includes
    Rashba spin–orbit coupling due to the electric field on the surface of the ferromagnet.
    The proposed mechanism allows us to study magnetic anisotropy of the system with
    an extended Stoner–Wohlfarth model and argue that adsorbed achiral molecules can
    change magnetocrystalline anisotropy of the substrate. Our research aims to motivate
    further experimental studies of the current-free chirality induced spin selectivity
    effect involving both enantiomers.
acknowledgement: "We thank Zhanybek Alpichshev, Mohammad Reza Safari, Binghai Yan,
  and Yossi Paltiel for enlightening discussions.\r\nM.L. acknowledges support from
  the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). A. C. received
  funding from the European Union’s Horizon Europe research and innovation program
  under the Marie Skłodowska-Curie Grant Agreement No. 101062862 - NeqMolRot."
article_number: '104103'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Ragheed
  full_name: Al Hyder, Ragheed
  id: d1c405be-ae15-11ed-8510-ccf53278162e
  last_name: Al Hyder
- first_name: Alberto
  full_name: Cappellaro, Alberto
  id: 9d13b3cb-30a2-11eb-80dc-f772505e8660
  last_name: Cappellaro
  orcid: 0000-0001-6110-2359
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Artem
  full_name: Volosniev, Artem
  id: 37D278BC-F248-11E8-B48F-1D18A9856A87
  last_name: Volosniev
  orcid: 0000-0003-0393-5525
citation:
  ama: Al Hyder R, Cappellaro A, Lemeshko M, Volosniev A. Achiral dipoles on a ferromagnet
    can affect its magnetization direction. <i>The Journal of Chemical Physics</i>.
    2023;159(10). doi:<a href="https://doi.org/10.1063/5.0165806">10.1063/5.0165806</a>
  apa: Al Hyder, R., Cappellaro, A., Lemeshko, M., &#38; Volosniev, A. (2023). Achiral
    dipoles on a ferromagnet can affect its magnetization direction. <i>The Journal
    of Chemical Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/5.0165806">https://doi.org/10.1063/5.0165806</a>
  chicago: Al Hyder, Ragheed, Alberto Cappellaro, Mikhail Lemeshko, and Artem Volosniev.
    “Achiral Dipoles on a Ferromagnet Can Affect Its Magnetization Direction.” <i>The
    Journal of Chemical Physics</i>. AIP Publishing, 2023. <a href="https://doi.org/10.1063/5.0165806">https://doi.org/10.1063/5.0165806</a>.
  ieee: R. Al Hyder, A. Cappellaro, M. Lemeshko, and A. Volosniev, “Achiral dipoles
    on a ferromagnet can affect its magnetization direction,” <i>The Journal of Chemical
    Physics</i>, vol. 159, no. 10. AIP Publishing, 2023.
  ista: Al Hyder R, Cappellaro A, Lemeshko M, Volosniev A. 2023. Achiral dipoles on
    a ferromagnet can affect its magnetization direction. The Journal of Chemical
    Physics. 159(10), 104103.
  mla: Al Hyder, Ragheed, et al. “Achiral Dipoles on a Ferromagnet Can Affect Its
    Magnetization Direction.” <i>The Journal of Chemical Physics</i>, vol. 159, no.
    10, 104103, AIP Publishing, 2023, doi:<a href="https://doi.org/10.1063/5.0165806">10.1063/5.0165806</a>.
  short: R. Al Hyder, A. Cappellaro, M. Lemeshko, A. Volosniev, The Journal of Chemical
    Physics 159 (2023).
corr_author: '1'
date_created: 2023-09-13T09:25:09Z
date_published: 2023-09-11T00:00:00Z
date_updated: 2025-09-09T12:57:42Z
day: '11'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1063/5.0165806
ec_funded: 1
external_id:
  arxiv:
  - '2306.17592'
  isi:
  - '001133333600011'
  pmid:
  - '37694742'
file:
- access_level: open_access
  checksum: 507ab65ab29e2c987c94cabad7c5370b
  content_type: application/pdf
  creator: acappell
  date_created: 2023-09-13T09:34:20Z
  date_updated: 2023-09-13T09:34:20Z
  file_id: '14322'
  file_name: 104103_1_5.0165806.pdf
  file_size: 5749653
  relation: main_file
  success: 1
file_date_updated: 2023-09-13T09:34:20Z
has_accepted_license: '1'
intvolume: '       159'
isi: 1
issue: '10'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: bd7b5202-d553-11ed-ba76-9b1c1b258338
  grant_number: '101062862'
  name: Non-Equilibrium Field Theory of Molecular Rotations
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Achiral dipoles on a ferromagnet can affect its magnetization direction
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 159
year: '2023'
...
---
_id: '14603'
abstract:
- lang: eng
  text: Computing the solubility of crystals in a solvent using atomistic simulations
    is notoriously challenging due to the complexities and convergence issues associated
    with free-energy methods, as well as the slow equilibration in direct-coexistence
    simulations. This paper introduces a molecular-dynamics workflow that simplifies
    and robustly computes the solubility of molecular or ionic crystals. This method
    is considerably more straightforward than the state-of-the-art, as we have streamlined
    and optimised each step of the process. Specifically, we calculate the chemical
    potential of the crystal using the gas-phase molecule as a reference state, and
    employ the S0 method to determine the concentration dependence of the chemical
    potential of the solute. We use this workflow to predict the solubilities of sodium
    chloride in water, urea polymorphs in water, and paracetamol polymorphs in both
    water and ethanol. Our findings indicate that the predicted solubility is sensitive
    to the chosen potential energy surface. Furthermore, we note that the harmonic
    approximation often fails for both molecular crystals and gas molecules at or
    above room temperature, and that the assumption of an ideal solution becomes less
    valid for highly soluble substances.
acknowledgement: A.R. and B.C. acknowledge resources provided by the Cambridge Tier-2
  system operated by the University of Cambridge Research Computing Service funded
  by EPSRC Tier-2 capital Grant No. EP/P020259/1. P.Y.C. acknowledges support from
  the Ernest Oppenheimer Fund and the Winton Programme for the Physics of Sustainability.
article_number: '184110'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Aleks
  full_name: Reinhardt, Aleks
  last_name: Reinhardt
- first_name: Pin Yu
  full_name: Chew, Pin Yu
  last_name: Chew
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
citation:
  ama: Reinhardt A, Chew PY, Cheng B. A streamlined molecular-dynamics workflow for
    computing solubilities of molecular and ionic crystals. <i>Journal of Chemical
    Physics</i>. 2023;159(18). doi:<a href="https://doi.org/10.1063/5.0173341">10.1063/5.0173341</a>
  apa: Reinhardt, A., Chew, P. Y., &#38; Cheng, B. (2023). A streamlined molecular-dynamics
    workflow for computing solubilities of molecular and ionic crystals. <i>Journal
    of Chemical Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/5.0173341">https://doi.org/10.1063/5.0173341</a>
  chicago: Reinhardt, Aleks, Pin Yu Chew, and Bingqing Cheng. “A Streamlined Molecular-Dynamics
    Workflow for Computing Solubilities of Molecular and Ionic Crystals.” <i>Journal
    of Chemical Physics</i>. AIP Publishing, 2023. <a href="https://doi.org/10.1063/5.0173341">https://doi.org/10.1063/5.0173341</a>.
  ieee: A. Reinhardt, P. Y. Chew, and B. Cheng, “A streamlined molecular-dynamics
    workflow for computing solubilities of molecular and ionic crystals,” <i>Journal
    of Chemical Physics</i>, vol. 159, no. 18. AIP Publishing, 2023.
  ista: Reinhardt A, Chew PY, Cheng B. 2023. A streamlined molecular-dynamics workflow
    for computing solubilities of molecular and ionic crystals. Journal of Chemical
    Physics. 159(18), 184110.
  mla: Reinhardt, Aleks, et al. “A Streamlined Molecular-Dynamics Workflow for Computing
    Solubilities of Molecular and Ionic Crystals.” <i>Journal of Chemical Physics</i>,
    vol. 159, no. 18, 184110, AIP Publishing, 2023, doi:<a href="https://doi.org/10.1063/5.0173341">10.1063/5.0173341</a>.
  short: A. Reinhardt, P.Y. Chew, B. Cheng, Journal of Chemical Physics 159 (2023).
corr_author: '1'
date_created: 2023-11-26T23:00:54Z
date_published: 2023-11-14T00:00:00Z
date_updated: 2025-09-09T13:32:46Z
day: '14'
ddc:
- '530'
- '540'
department:
- _id: BiCh
doi: 10.1063/5.0173341
external_id:
  arxiv:
  - '2308.10886'
  isi:
  - '001137066700001'
  pmid:
  - '37962445'
file:
- access_level: open_access
  checksum: f668ee0d07096eef81159d05bc27aabc
  content_type: application/pdf
  creator: dernst
  date_created: 2023-11-28T08:39:06Z
  date_updated: 2023-11-28T08:39:06Z
  file_id: '14620'
  file_name: 2023_JourChemicalPhysics_Reinhardt.pdf
  file_size: 6276059
  relation: main_file
  success: 1
file_date_updated: 2023-11-28T08:39:06Z
has_accepted_license: '1'
intvolume: '       159'
isi: 1
issue: '18'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
  record:
  - id: '14619'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: A streamlined molecular-dynamics workflow for computing solubilities of molecular
  and ionic crystals
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 159
year: '2023'
...
---
_id: '12705'
abstract:
- lang: eng
  text: The elasticity of disordered and polydisperse polymer networks is a fundamental
    problem of soft matter physics that is still open. Here, we self-assemble polymer
    networks via simulations of a mixture of bivalent and tri- or tetravalent patchy
    particles, which result in an exponential strand length distribution analogous
    to that of experimental randomly cross-linked systems. After assembly, the network
    connectivity and topology are frozen and the resulting system is characterized.
    We find that the fractal structure of the network depends on the number density
    at which the assembly has been carried out, but that systems with the same mean
    valence and same assembly density have the same structural properties. Moreover,
    we compute the long-time limit of the mean-squared displacement, also known as
    the (squared) localization length, of the cross-links and of the middle monomers
    of the strands, showing that the dynamics of long strands is well described by
    the tube model. Finally, we find a relation connecting these two localization
    lengths at high density and connect the cross-link localization length to the
    shear modulus of the system.
acknowledgement: We thank Michael Lang for helpful discussions. We acknowledge financial
  support from the European Research Council (ERC Consolidator Grant No. 681597, MIMIC)
  and from LabEx NUMEV (Grant No. ANR-10-LABX-20) funded by the “Investissements d’Avenir”
  French Government program, managed by the French National Research Agency (ANR).
  W.K. is a senior member of the Institut Universitaire de France.
article_number: '074905'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Valerio
  full_name: Sorichetti, Valerio
  id: ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b
  last_name: Sorichetti
  orcid: 0000-0002-9645-6576
- first_name: Andrea
  full_name: Ninarello, Andrea
  last_name: Ninarello
- first_name: José
  full_name: Ruiz-Franco, José
  last_name: Ruiz-Franco
- first_name: Virginie
  full_name: Hugouvieux, Virginie
  last_name: Hugouvieux
- first_name: Emanuela
  full_name: Zaccarelli, Emanuela
  last_name: Zaccarelli
- first_name: Cristian
  full_name: Micheletti, Cristian
  last_name: Micheletti
- first_name: Walter
  full_name: Kob, Walter
  last_name: Kob
- first_name: Lorenzo
  full_name: Rovigatti, Lorenzo
  last_name: Rovigatti
citation:
  ama: Sorichetti V, Ninarello A, Ruiz-Franco J, et al. Structure and elasticity of
    model disordered, polydisperse, and defect-free polymer networks. <i>Journal of
    Chemical Physics</i>. 2023;158(7). doi:<a href="https://doi.org/10.1063/5.0134271">10.1063/5.0134271</a>
  apa: Sorichetti, V., Ninarello, A., Ruiz-Franco, J., Hugouvieux, V., Zaccarelli,
    E., Micheletti, C., … Rovigatti, L. (2023). Structure and elasticity of model
    disordered, polydisperse, and defect-free polymer networks. <i>Journal of Chemical
    Physics</i>. American Institute of Physics. <a href="https://doi.org/10.1063/5.0134271">https://doi.org/10.1063/5.0134271</a>
  chicago: Sorichetti, Valerio, Andrea Ninarello, José Ruiz-Franco, Virginie Hugouvieux,
    Emanuela Zaccarelli, Cristian Micheletti, Walter Kob, and Lorenzo Rovigatti. “Structure
    and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.”
    <i>Journal of Chemical Physics</i>. American Institute of Physics, 2023. <a href="https://doi.org/10.1063/5.0134271">https://doi.org/10.1063/5.0134271</a>.
  ieee: V. Sorichetti <i>et al.</i>, “Structure and elasticity of model disordered,
    polydisperse, and defect-free polymer networks,” <i>Journal of Chemical Physics</i>,
    vol. 158, no. 7. American Institute of Physics, 2023.
  ista: Sorichetti V, Ninarello A, Ruiz-Franco J, Hugouvieux V, Zaccarelli E, Micheletti
    C, Kob W, Rovigatti L. 2023. Structure and elasticity of model disordered, polydisperse,
    and defect-free polymer networks. Journal of Chemical Physics. 158(7), 074905.
  mla: Sorichetti, Valerio, et al. “Structure and Elasticity of Model Disordered,
    Polydisperse, and Defect-Free Polymer Networks.” <i>Journal of Chemical Physics</i>,
    vol. 158, no. 7, 074905, American Institute of Physics, 2023, doi:<a href="https://doi.org/10.1063/5.0134271">10.1063/5.0134271</a>.
  short: V. Sorichetti, A. Ninarello, J. Ruiz-Franco, V. Hugouvieux, E. Zaccarelli,
    C. Micheletti, W. Kob, L. Rovigatti, Journal of Chemical Physics 158 (2023).
date_created: 2023-03-05T23:01:05Z
date_published: 2023-02-21T00:00:00Z
date_updated: 2023-10-03T11:31:51Z
day: '21'
department:
- _id: AnSa
doi: 10.1063/5.0134271
external_id:
  arxiv:
  - '2211.04810'
  isi:
  - '000936943800002'
  pmid:
  - '36813705'
intvolume: '       158'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2211.04810
month: '02'
oa: 1
oa_version: Preprint
pmid: 1
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: American Institute of Physics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structure and elasticity of model disordered, polydisperse, and defect-free
  polymer networks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 158
year: '2023'
...
---
_id: '12249'
abstract:
- lang: eng
  text: 'The chemical potential of a component in a solution is defined as the free
    energy change as the amount of that component changes. Computing this fundamental
    thermodynamic property from atomistic simulations is notoriously difficult because
    of the convergence issues involved in free energy methods and finite size effects.
    This Communication presents the so-called S0 method, which can be used to obtain
    chemical potentials from static structure factors computed from equilibrium molecular
    dynamics simulations under the isothermal–isobaric ensemble. This new method is
    demonstrated on the systems of binary Lennard-Jones particles, urea–water mixtures,
    a NaCl aqueous solution, and a high-pressure carbon–hydrogen mixture. '
acknowledgement: I thank Daan Frenkel for providing feedback on an early draft and
  for stimulating discussions, Debashish Mukherji and Robinson Cortes-Huerto for sharing
  the trajectories for urea–water mixtures, and Aleks Reinhardt for useful suggestions
  on the manuscript.
article_number: '121101'
article_processing_charge: No
article_type: original
author:
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
citation:
  ama: Cheng B. Computing chemical potentials of solutions from structure factors.
    <i>The Journal of Chemical Physics</i>. 2022;157(12). doi:<a href="https://doi.org/10.1063/5.0107059">10.1063/5.0107059</a>
  apa: Cheng, B. (2022). Computing chemical potentials of solutions from structure
    factors. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/5.0107059">https://doi.org/10.1063/5.0107059</a>
  chicago: Cheng, Bingqing. “Computing Chemical Potentials of Solutions from Structure
    Factors.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2022. <a href="https://doi.org/10.1063/5.0107059">https://doi.org/10.1063/5.0107059</a>.
  ieee: B. Cheng, “Computing chemical potentials of solutions from structure factors,”
    <i>The Journal of Chemical Physics</i>, vol. 157, no. 12. AIP Publishing, 2022.
  ista: Cheng B. 2022. Computing chemical potentials of solutions from structure factors.
    The Journal of Chemical Physics. 157(12), 121101.
  mla: Cheng, Bingqing. “Computing Chemical Potentials of Solutions from Structure
    Factors.” <i>The Journal of Chemical Physics</i>, vol. 157, no. 12, 121101, AIP
    Publishing, 2022, doi:<a href="https://doi.org/10.1063/5.0107059">10.1063/5.0107059</a>.
  short: B. Cheng, The Journal of Chemical Physics 157 (2022).
corr_author: '1'
date_created: 2023-01-16T09:56:20Z
date_published: 2022-09-30T00:00:00Z
date_updated: 2025-06-11T13:41:59Z
day: '30'
ddc:
- '530'
- '540'
department:
- _id: BiCh
doi: 10.1063/5.0107059
external_id:
  isi:
  - '000862856000003'
  pmid:
  - '36182422'
file:
- access_level: open_access
  checksum: b0915b706568a663a9a372fca24adf35
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-30T09:07:00Z
  date_updated: 2023-01-30T09:07:00Z
  file_id: '12441'
  file_name: 2022_JourChemPhysics_Cheng.pdf
  file_size: 4402384
  relation: main_file
  success: 1
file_date_updated: 2023-01-30T09:07:00Z
has_accepted_license: '1'
intvolume: '       157'
isi: 1
issue: '12'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/ BingqingCheng/S0
scopus_import: '1'
status: public
title: Computing chemical potentials of solutions from structure factors
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 157
year: '2022'
...
---
_id: '11400'
abstract:
- lang: eng
  text: By varying the concentration of molecules in the cytoplasm or on the membrane,
    cells can induce the formation of condensates and liquid droplets, similar to
    phase separation. Their thermodynamics, much studied, depends on the mutual interactions
    between microscopic constituents. Here, we focus on the kinetics and size control
    of 2D clusters, forming on membranes. Using molecular dynamics of patchy colloids,
    we model a system of two species of proteins, giving origin to specific heterotypic
    bonds. We find that concentrations, together with valence and bond strength, control
    both the size and the growth time rate of the clusters. In particular, if one
    species is in large excess, it gradually saturates the binding sites of the other
    species; the system then becomes kinetically arrested and cluster coarsening slows
    down or stops, thus yielding effective size selection. This phenomenology is observed
    both in solid and fluid clusters, which feature additional generic homotypic interactions
    and are reminiscent of the ones observed on biological membranes.
acknowledgement: "The authors thank Longhui Zeng and Xiaolei Su (Yale University)
  for bringing the topic to their attention and for useful comments. This work has
  received funding from the European Research Council under the European Union’s Horizon\r\n2020
  research and innovation program (ERC Grant No. 802960 and Marie Skłodowska-Curie
  Grant No. 101034413). The authors are grateful to the UK Materials and Molecular
  Modeling Hub for computational resources, which is partially funded by EPSRC (Grant
  Nos. EP/P020194/1 and EP/T022213/1). The authors acknowledge support from ISTA and
  from the Royal Society (Grant No. UF160266)."
article_number: '194902'
article_processing_charge: No
article_type: original
author:
- first_name: Ivan
  full_name: Palaia, Ivan
  id: 9c805cd2-4b75-11ec-a374-db6dd0ed57fa
  last_name: Palaia
  orcid: ' 0000-0002-8843-9485 '
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
citation:
  ama: Palaia I, Šarić A. Controlling cluster size in 2D phase-separating binary mixtures
    with specific interactions. <i>The Journal of Chemical Physics</i>. 2022;156(19).
    doi:<a href="https://doi.org/10.1063/5.0087769">10.1063/5.0087769</a>
  apa: Palaia, I., &#38; Šarić, A. (2022). Controlling cluster size in 2D phase-separating
    binary mixtures with specific interactions. <i>The Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0087769">https://doi.org/10.1063/5.0087769</a>
  chicago: Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating
    Binary Mixtures with Specific Interactions.” <i>The Journal of Chemical Physics</i>.
    AIP Publishing, 2022. <a href="https://doi.org/10.1063/5.0087769">https://doi.org/10.1063/5.0087769</a>.
  ieee: I. Palaia and A. Šarić, “Controlling cluster size in 2D phase-separating binary
    mixtures with specific interactions,” <i>The Journal of Chemical Physics</i>,
    vol. 156, no. 19. AIP Publishing, 2022.
  ista: Palaia I, Šarić A. 2022. Controlling cluster size in 2D phase-separating binary
    mixtures with specific interactions. The Journal of Chemical Physics. 156(19),
    194902.
  mla: Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating
    Binary Mixtures with Specific Interactions.” <i>The Journal of Chemical Physics</i>,
    vol. 156, no. 19, 194902, AIP Publishing, 2022, doi:<a href="https://doi.org/10.1063/5.0087769">10.1063/5.0087769</a>.
  short: I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
corr_author: '1'
date_created: 2022-05-22T17:04:48Z
date_published: 2022-05-16T00:00:00Z
date_updated: 2025-06-11T14:00:32Z
day: '16'
ddc:
- '540'
department:
- _id: AnSa
doi: 10.1063/5.0087769
ec_funded: 1
external_id:
  isi:
  - '000797236000004'
  pmid:
  - '35597653'
file:
- access_level: open_access
  checksum: 7fada58059676a4bb0944b82247af740
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-23T07:45:33Z
  date_updated: 2022-05-23T07:45:33Z
  file_id: '11405'
  file_name: 2022_JourChemPhysics_Palaia.pdf
  file_size: 6387208
  relation: main_file
  success: 1
file_date_updated: 2022-05-23T07:45:33Z
has_accepted_license: '1'
intvolume: '       156'
isi: 1
issue: '19'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: eba2549b-77a9-11ec-83b8-a81e493eae4e
  call_identifier: H2020
  grant_number: '802960'
  name: 'Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines'
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Controlling cluster size in 2D phase-separating binary mixtures with specific
  interactions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 156
year: '2022'
...
---
OA_type: closed access
_id: '17907'
abstract:
- lang: eng
  text: Carbyne is a linear allotrope of carbon that is composed of a chain of sp-hybridized
    carbon atoms. Through appropriate engineering of the chain termination, carbyne
    can harbor helical states where the π-electron delocalization twists along the
    axis of the chain. Herein, we present a comprehensive analysis of these helical
    states at the tight-binding level. We demonstrate that, in general, the molecular
    orbital coefficients of the helical states trace out an ellipse, in analogy to
    elliptically polarized light. Helical states can be realized in a model, inspired
    by the structure of cumulene, which considers a chain terminated by sp2-hybridized
    atoms oriented at a nontrivial dihedral angle. We provide a complete analytic
    solution for this model. Additionally, we present a variation of the model that
    yields perfect helical states that trace out a circle as opposed to an ellipse.
    Our results provide a deeper understanding of helical states and lay a foundation
    for more advanced levels of theory.
article_number: '124304 '
article_processing_charge: No
article_type: original
author:
- first_name: Suman
  full_name: Gunasekaran, Suman
  last_name: Gunasekaran
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
citation:
  ama: Gunasekaran S, Venkataraman L. Tight-binding analysis of helical states in
    carbyne. <i>The Journal of Chemical Physics</i>. 2020;153(12). doi:<a href="https://doi.org/10.1063/5.0021146">10.1063/5.0021146</a>
  apa: Gunasekaran, S., &#38; Venkataraman, L. (2020). Tight-binding analysis of helical
    states in carbyne. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a
    href="https://doi.org/10.1063/5.0021146">https://doi.org/10.1063/5.0021146</a>
  chicago: Gunasekaran, Suman, and Latha Venkataraman. “Tight-Binding Analysis of
    Helical States in Carbyne.” <i>The Journal of Chemical Physics</i>. AIP Publishing,
    2020. <a href="https://doi.org/10.1063/5.0021146">https://doi.org/10.1063/5.0021146</a>.
  ieee: S. Gunasekaran and L. Venkataraman, “Tight-binding analysis of helical states
    in carbyne,” <i>The Journal of Chemical Physics</i>, vol. 153, no. 12. AIP Publishing,
    2020.
  ista: Gunasekaran S, Venkataraman L. 2020. Tight-binding analysis of helical states
    in carbyne. The Journal of Chemical Physics. 153(12), 124304.
  mla: Gunasekaran, Suman, and Latha Venkataraman. “Tight-Binding Analysis of Helical
    States in Carbyne.” <i>The Journal of Chemical Physics</i>, vol. 153, no. 12,
    124304, AIP Publishing, 2020, doi:<a href="https://doi.org/10.1063/5.0021146">10.1063/5.0021146</a>.
  short: S. Gunasekaran, L. Venkataraman, The Journal of Chemical Physics 153 (2020).
date_created: 2024-09-09T07:17:20Z
date_published: 2020-09-28T00:00:00Z
date_updated: 2024-12-10T10:46:25Z
day: '28'
doi: 10.1063/5.0021146
extern: '1'
external_id:
  pmid:
  - '33003709'
intvolume: '       153'
issue: '12'
language:
- iso: eng
month: '09'
oa_version: None
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tight-binding analysis of helical states in carbyne
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 153
year: '2020'
...
---
_id: '9658'
abstract:
- lang: eng
  text: Macroscopic models of nucleation provide powerful tools for understanding
    activated phase transition processes. These models do not provide atomistic insights
    and can thus sometimes lack material-specific descriptions. Here, we provide a
    comprehensive framework for constructing a continuum picture from an atomistic
    simulation of homogeneous nucleation. We use this framework to determine the equilibrium
    shape of the solid nucleus that forms inside bulk liquid for a Lennard-Jones potential.
    From this shape, we then extract the anisotropy of the solid-liquid interfacial
    free energy, by performing a reverse Wulff construction in the space of spherical
    harmonic expansions. We find that the shape of the nucleus is nearly spherical
    and that its anisotropy can be perfectly described using classical models.
article_number: '044103'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
- first_name: Michele
  full_name: Ceriotti, Michele
  last_name: Ceriotti
- first_name: Gareth A.
  full_name: Tribello, Gareth A.
  last_name: Tribello
citation:
  ama: Cheng B, Ceriotti M, Tribello GA. Classical nucleation theory predicts the
    shape of the nucleus in homogeneous solidification. <i>The Journal of Chemical
    Physics</i>. 2020;152(4). doi:<a href="https://doi.org/10.1063/1.5134461">10.1063/1.5134461</a>
  apa: Cheng, B., Ceriotti, M., &#38; Tribello, G. A. (2020). Classical nucleation
    theory predicts the shape of the nucleus in homogeneous solidification. <i>The
    Journal of Chemical Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/1.5134461">https://doi.org/10.1063/1.5134461</a>
  chicago: Cheng, Bingqing, Michele Ceriotti, and Gareth A. Tribello. “Classical Nucleation
    Theory Predicts the Shape of the Nucleus in Homogeneous Solidification.” <i>The
    Journal of Chemical Physics</i>. AIP Publishing, 2020. <a href="https://doi.org/10.1063/1.5134461">https://doi.org/10.1063/1.5134461</a>.
  ieee: B. Cheng, M. Ceriotti, and G. A. Tribello, “Classical nucleation theory predicts
    the shape of the nucleus in homogeneous solidification,” <i>The Journal of Chemical
    Physics</i>, vol. 152, no. 4. AIP Publishing, 2020.
  ista: Cheng B, Ceriotti M, Tribello GA. 2020. Classical nucleation theory predicts
    the shape of the nucleus in homogeneous solidification. The Journal of Chemical
    Physics. 152(4), 044103.
  mla: Cheng, Bingqing, et al. “Classical Nucleation Theory Predicts the Shape of
    the Nucleus in Homogeneous Solidification.” <i>The Journal of Chemical Physics</i>,
    vol. 152, no. 4, 044103, AIP Publishing, 2020, doi:<a href="https://doi.org/10.1063/1.5134461">10.1063/1.5134461</a>.
  short: B. Cheng, M. Ceriotti, G.A. Tribello, The Journal of Chemical Physics 152
    (2020).
date_created: 2021-07-15T07:22:24Z
date_published: 2020-01-31T00:00:00Z
date_updated: 2023-02-23T14:03:55Z
day: '31'
doi: 10.1063/1.5134461
extern: '1'
external_id:
  arxiv:
  - '1910.13481'
  pmid:
  - '32007057'
intvolume: '       152'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://pure.qub.ac.uk/en/publications/classical-nucleation-theory-predicts-the-shape-of-the-nucleus-in-homogeneous-solidification(56af848b-eee8-4e9b-93cf-667373e4a49b).html
month: '01'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Classical nucleation theory predicts the shape of the nucleus in homogeneous
  solidification
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 152
year: '2020'
...
---
_id: '8587'
abstract:
- lang: eng
  text: Inspired by the possibility to experimentally manipulate and enhance chemical
    reactivity in helium nanodroplets, we investigate the effective interaction and
    the resulting correlations between two diatomic molecules immersed in a bath of
    bosons. By analogy with the bipolaron, we introduce the biangulon quasiparticle
    describing two rotating molecules that align with respect to each other due to
    the effective attractive interaction mediated by the excitations of the bath.
    We study this system in different parameter regimes and apply several theoretical
    approaches to describe its properties. Using a Born–Oppenheimer approximation,
    we investigate the dependence of the effective intermolecular interaction on the
    rotational state of the two molecules. In the strong-coupling regime, a product-state
    ansatz shows that the molecules tend to have a strong alignment in the ground
    state. To investigate the system in the weak-coupling regime, we apply a one-phonon
    excitation variational ansatz, which allows us to access the energy spectrum.
    In comparison to the angulon quasiparticle, the biangulon shows shifted angulon
    instabilities and an additional spectral instability, where resonant angular momentum
    transfer between the molecules and the bath takes place. These features are proposed
    as an experimentally observable signature for the formation of the biangulon quasiparticle.
    Finally, by using products of single angulon and bare impurity wave functions
    as basis states, we introduce a diagonalization scheme that allows us to describe
    the transition from two separated angulons to a biangulon as a function of the
    distance between the two molecules.
acknowledgement: We are grateful to Areg Ghazaryan for valuable discussions. M.L.
  acknowledges support from the Austrian Science Fund (FWF) under Project No. P29902-N27
  and from the European Research Council (ERC) Starting Grant No. 801770 (ANGULON).
  G.B. acknowledges support from the Austrian Science Fund (FWF) under Project No.
  M2461-N27. A.D. acknowledges funding from the European Union’s Horizon 2020 research
  and innovation programme under the European Research Council (ERC) Grant Agreement
  No. 694227 and under the Marie Sklodowska-Curie Grant Agreement No. 836146. R.S.
  was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
  under Germany’s Excellence Strategy – EXC-2111 – 390814868.
article_number: '164302'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Xiang
  full_name: Li, Xiang
  id: 4B7E523C-F248-11E8-B48F-1D18A9856A87
  last_name: Li
- first_name: Enderalp
  full_name: Yakaboylu, Enderalp
  id: 38CB71F6-F248-11E8-B48F-1D18A9856A87
  last_name: Yakaboylu
  orcid: 0000-0001-5973-0874
- first_name: Giacomo
  full_name: Bighin, Giacomo
  id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
  last_name: Bighin
  orcid: 0000-0001-8823-9777
- first_name: Richard
  full_name: Schmidt, Richard
  last_name: Schmidt
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Andreas
  full_name: Deuchert, Andreas
  id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
  last_name: Deuchert
  orcid: 0000-0003-3146-6746
citation:
  ama: Li X, Yakaboylu E, Bighin G, Schmidt R, Lemeshko M, Deuchert A. Intermolecular
    forces and correlations mediated by a phonon bath. <i>The Journal of Chemical
    Physics</i>. 2020;152(16). doi:<a href="https://doi.org/10.1063/1.5144759">10.1063/1.5144759</a>
  apa: Li, X., Yakaboylu, E., Bighin, G., Schmidt, R., Lemeshko, M., &#38; Deuchert,
    A. (2020). Intermolecular forces and correlations mediated by a phonon bath. <i>The
    Journal of Chemical Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/1.5144759">https://doi.org/10.1063/1.5144759</a>
  chicago: Li, Xiang, Enderalp Yakaboylu, Giacomo Bighin, Richard Schmidt, Mikhail
    Lemeshko, and Andreas Deuchert. “Intermolecular Forces and Correlations Mediated
    by a Phonon Bath.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2020.
    <a href="https://doi.org/10.1063/1.5144759">https://doi.org/10.1063/1.5144759</a>.
  ieee: X. Li, E. Yakaboylu, G. Bighin, R. Schmidt, M. Lemeshko, and A. Deuchert,
    “Intermolecular forces and correlations mediated by a phonon bath,” <i>The Journal
    of Chemical Physics</i>, vol. 152, no. 16. AIP Publishing, 2020.
  ista: Li X, Yakaboylu E, Bighin G, Schmidt R, Lemeshko M, Deuchert A. 2020. Intermolecular
    forces and correlations mediated by a phonon bath. The Journal of Chemical Physics.
    152(16), 164302.
  mla: Li, Xiang, et al. “Intermolecular Forces and Correlations Mediated by a Phonon
    Bath.” <i>The Journal of Chemical Physics</i>, vol. 152, no. 16, 164302, AIP Publishing,
    2020, doi:<a href="https://doi.org/10.1063/1.5144759">10.1063/1.5144759</a>.
  short: X. Li, E. Yakaboylu, G. Bighin, R. Schmidt, M. Lemeshko, A. Deuchert, The
    Journal of Chemical Physics 152 (2020).
corr_author: '1'
date_created: 2020-09-30T10:33:17Z
date_published: 2020-04-27T00:00:00Z
date_updated: 2026-04-08T07:26:09Z
day: '27'
department:
- _id: MiLe
- _id: RoSe
doi: 10.1063/1.5144759
ec_funded: 1
external_id:
  arxiv:
  - '1912.02658'
  isi:
  - '000530448300001'
  pmid:
  - '32357791'
intvolume: '       152'
isi: 1
issue: '16'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1912.02658
month: '04'
oa: 1
oa_version: Preprint
pmid: 1
project:
- _id: 26031614-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29902
  name: Quantum rotations in the presence of a many-body environment
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
- _id: 26986C82-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02641
  name: A path-integral approach to composite impurities
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
  record:
  - id: '8958'
    relation: dissertation_contains
    status: public
status: public
title: Intermolecular forces and correlations mediated by a phonon bath
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 152
year: '2020'
...
---
_id: '7422'
abstract:
- lang: eng
  text: Biochemical reactions often occur at low copy numbers but at once in crowded
    and diverse environments. Space and stochasticity therefore play an essential
    role in biochemical networks. Spatial-stochastic simulations have become a prominent
    tool for understanding how stochasticity at the microscopic level influences the
    macroscopic behavior of such systems. While particle-based models guarantee the
    level of detail necessary to accurately describe the microscopic dynamics at very
    low copy numbers, the algorithms used to simulate them typically imply trade-offs
    between computational efficiency and biochemical accuracy. eGFRD (enhanced Green’s
    Function Reaction Dynamics) is an exact algorithm that evades such trade-offs
    by partitioning the N-particle system into M ≤ N analytically tractable one- and
    two-particle systems; the analytical solutions (Green’s functions) then are used
    to implement an event-driven particle-based scheme that allows particles to make
    large jumps in time and space while retaining access to their state variables
    at arbitrary simulation times. Here we present “eGFRD2,” a new eGFRD version that
    implements the principle of eGFRD in all dimensions, thus enabling efficient particle-based
    simulation of biochemical reaction-diffusion processes in the 3D cytoplasm, on
    2D planes representing membranes, and on 1D elongated cylinders representative
    of, e.g., cytoskeletal tracks or DNA; in 1D, it also incorporates convective motion
    used to model active transport. We find that, for low particle densities, eGFRD2
    is up to 6 orders of magnitude faster than conventional Brownian dynamics. We
    exemplify the capabilities of eGFRD2 by simulating an idealized model of Pom1
    gradient formation, which involves 3D diffusion, active transport on microtubules,
    and autophosphorylation on the membrane, confirming recent experimental and theoretical
    results on this system to hold under genuinely stochastic conditions.
article_number: '054108'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Thomas R
  full_name: Sokolowski, Thomas R
  id: 3E999752-F248-11E8-B48F-1D18A9856A87
  last_name: Sokolowski
  orcid: 0000-0002-1287-3779
- first_name: Joris
  full_name: Paijmans, Joris
  last_name: Paijmans
- first_name: Laurens
  full_name: Bossen, Laurens
  last_name: Bossen
- first_name: Thomas
  full_name: Miedema, Thomas
  last_name: Miedema
- first_name: Martijn
  full_name: Wehrens, Martijn
  last_name: Wehrens
- first_name: Nils B.
  full_name: Becker, Nils B.
  last_name: Becker
- first_name: Kazunari
  full_name: Kaizu, Kazunari
  last_name: Kaizu
- first_name: Koichi
  full_name: Takahashi, Koichi
  last_name: Takahashi
- first_name: Marileen
  full_name: Dogterom, Marileen
  last_name: Dogterom
- first_name: Pieter Rein
  full_name: ten Wolde, Pieter Rein
  last_name: ten Wolde
citation:
  ama: Sokolowski TR, Paijmans J, Bossen L, et al. eGFRD in all dimensions. <i>The
    Journal of Chemical Physics</i>. 2019;150(5). doi:<a href="https://doi.org/10.1063/1.5064867">10.1063/1.5064867</a>
  apa: Sokolowski, T. R., Paijmans, J., Bossen, L., Miedema, T., Wehrens, M., Becker,
    N. B., … ten Wolde, P. R. (2019). eGFRD in all dimensions. <i>The Journal of Chemical
    Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/1.5064867">https://doi.org/10.1063/1.5064867</a>
  chicago: Sokolowski, Thomas R, Joris Paijmans, Laurens Bossen, Thomas Miedema, Martijn
    Wehrens, Nils B. Becker, Kazunari Kaizu, Koichi Takahashi, Marileen Dogterom,
    and Pieter Rein ten Wolde. “EGFRD in All Dimensions.” <i>The Journal of Chemical
    Physics</i>. AIP Publishing, 2019. <a href="https://doi.org/10.1063/1.5064867">https://doi.org/10.1063/1.5064867</a>.
  ieee: T. R. Sokolowski <i>et al.</i>, “eGFRD in all dimensions,” <i>The Journal
    of Chemical Physics</i>, vol. 150, no. 5. AIP Publishing, 2019.
  ista: Sokolowski TR, Paijmans J, Bossen L, Miedema T, Wehrens M, Becker NB, Kaizu
    K, Takahashi K, Dogterom M, ten Wolde PR. 2019. eGFRD in all dimensions. The Journal
    of Chemical Physics. 150(5), 054108.
  mla: Sokolowski, Thomas R., et al. “EGFRD in All Dimensions.” <i>The Journal of
    Chemical Physics</i>, vol. 150, no. 5, 054108, AIP Publishing, 2019, doi:<a href="https://doi.org/10.1063/1.5064867">10.1063/1.5064867</a>.
  short: T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker,
    K. Kaizu, K. Takahashi, M. Dogterom, P.R. ten Wolde, The Journal of Chemical Physics
    150 (2019).
date_created: 2020-01-30T10:34:36Z
date_published: 2019-02-07T00:00:00Z
date_updated: 2023-09-06T14:59:28Z
day: '07'
department:
- _id: GaTk
doi: 10.1063/1.5064867
external_id:
  arxiv:
  - '1708.09364'
  isi:
  - '000458109300009'
intvolume: '       150'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1708.09364
month: '02'
oa: 1
oa_version: Preprint
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
status: public
title: eGFRD in all dimensions
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 150
year: '2019'
...
---
_id: '9659'
abstract:
- lang: eng
  text: The curvature dependence of interfacial free energy, which is crucial in quantitatively
    predicting nucleation kinetics and the stability of bubbles and droplets, is quantified
    by the Tolman length δ. For solid-liquid interfaces, however, δ has never been
    computed directly due to various theoretical and practical challenges. Here we
    perform a direct evaluation of the Tolman length from atomistic simulations of
    a solid-liquid planar interface in out-of-equilibrium conditions, by first computing
    the surface tension from the amplitude of thermal capillary fluctuations of a
    localized version of the Gibbs dividing surface and by then calculating how much
    the surface energy changes when it is defined relative to the equimolar dividing
    surface. We computed δ for a model potential, and found a good agreement with
    the values indirectly inferred from nucleation simulations. The agreement not
    only validates our approach but also suggests that the nucleation free energy
    of the system can be perfectly described using classical nucleation theory if
    the Tolman length is taken into account.
article_number: '231102'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
- first_name: Michele
  full_name: Ceriotti, Michele
  last_name: Ceriotti
citation:
  ama: 'Cheng B, Ceriotti M. Communication: Computing the Tolman length for solid-liquid
    interfaces. <i>The Journal of Chemical Physics</i>. 2018;148(23). doi:<a href="https://doi.org/10.1063/1.5038396">10.1063/1.5038396</a>'
  apa: 'Cheng, B., &#38; Ceriotti, M. (2018). Communication: Computing the Tolman
    length for solid-liquid interfaces. <i>The Journal of Chemical Physics</i>. AIP
    Publishing. <a href="https://doi.org/10.1063/1.5038396">https://doi.org/10.1063/1.5038396</a>'
  chicago: 'Cheng, Bingqing, and Michele Ceriotti. “Communication: Computing the Tolman
    Length for Solid-Liquid Interfaces.” <i>The Journal of Chemical Physics</i>. AIP
    Publishing, 2018. <a href="https://doi.org/10.1063/1.5038396">https://doi.org/10.1063/1.5038396</a>.'
  ieee: 'B. Cheng and M. Ceriotti, “Communication: Computing the Tolman length for
    solid-liquid interfaces,” <i>The Journal of Chemical Physics</i>, vol. 148, no.
    23. AIP Publishing, 2018.'
  ista: 'Cheng B, Ceriotti M. 2018. Communication: Computing the Tolman length for
    solid-liquid interfaces. The Journal of Chemical Physics. 148(23), 231102.'
  mla: 'Cheng, Bingqing, and Michele Ceriotti. “Communication: Computing the Tolman
    Length for Solid-Liquid Interfaces.” <i>The Journal of Chemical Physics</i>, vol.
    148, no. 23, 231102, AIP Publishing, 2018, doi:<a href="https://doi.org/10.1063/1.5038396">10.1063/1.5038396</a>.'
  short: B. Cheng, M. Ceriotti, The Journal of Chemical Physics 148 (2018).
date_created: 2021-07-15T07:51:42Z
date_published: 2018-06-21T00:00:00Z
date_updated: 2023-02-23T14:03:57Z
day: '21'
doi: 10.1063/1.5038396
extern: '1'
external_id:
  arxiv:
  - '1803.09140'
  pmid:
  - '29935495'
intvolume: '       148'
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1063/1.5038396
month: '06'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Communication: Computing the Tolman length for solid-liquid interfaces'
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 148
year: '2018'
...
---
_id: '14006'
abstract:
- lang: eng
  text: We present a theoretical formalism for the calculation of attosecond delays
    in molecular photoionization. It is shown how delays relevant to one-photon-ionization,
    also known as Eisenbud-Wigner-Smith delays, can be obtained from the complex dipole
    matrix elements provided by molecular quantum scattering theory. These results
    are used to derive formulae for the delays measured by two-photon attosecond interferometry
    based on an attosecond pulse train and a dressing femtosecond infrared pulse.
    These effective delays are first expressed in the molecular frame where maximal
    information about the molecular photoionization dynamics is available. The effects
    of averaging over the emission direction of the electron and the molecular orientation
    are introduced analytically. We illustrate this general formalism for the case
    of two polyatomic molecules. N2O serves as an example of a polar linear molecule
    characterized by complex photoionization dynamics resulting from the presence
    of molecular shape resonances. H2O illustrates the case of a non-linear molecule
    with comparably simple photoionization dynamics resulting from a flat continuum.
    Our theory establishes the foundation for interpreting measurements of the photoionization
    dynamics of all molecules by attosecond metrology.
article_number: '124306'
article_processing_charge: No
article_type: original
author:
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Hans Jakob
  full_name: Wörner, Hans Jakob
  last_name: Wörner
citation:
  ama: Baykusheva DR, Wörner HJ. Theory of attosecond delays in molecular photoionization.
    <i>The Journal of Chemical Physics</i>. 2017;146(12). doi:<a href="https://doi.org/10.1063/1.4977933">10.1063/1.4977933</a>
  apa: Baykusheva, D. R., &#38; Wörner, H. J. (2017). Theory of attosecond delays
    in molecular photoionization. <i>The Journal of Chemical Physics</i>. AIP Publishing.
    <a href="https://doi.org/10.1063/1.4977933">https://doi.org/10.1063/1.4977933</a>
  chicago: Baykusheva, Denitsa Rangelova, and Hans Jakob Wörner. “Theory of Attosecond
    Delays in Molecular Photoionization.” <i>The Journal of Chemical Physics</i>.
    AIP Publishing, 2017. <a href="https://doi.org/10.1063/1.4977933">https://doi.org/10.1063/1.4977933</a>.
  ieee: D. R. Baykusheva and H. J. Wörner, “Theory of attosecond delays in molecular
    photoionization,” <i>The Journal of Chemical Physics</i>, vol. 146, no. 12. AIP
    Publishing, 2017.
  ista: Baykusheva DR, Wörner HJ. 2017. Theory of attosecond delays in molecular photoionization.
    The Journal of Chemical Physics. 146(12), 124306.
  mla: Baykusheva, Denitsa Rangelova, and Hans Jakob Wörner. “Theory of Attosecond
    Delays in Molecular Photoionization.” <i>The Journal of Chemical Physics</i>,
    vol. 146, no. 12, 124306, AIP Publishing, 2017, doi:<a href="https://doi.org/10.1063/1.4977933">10.1063/1.4977933</a>.
  short: D.R. Baykusheva, H.J. Wörner, The Journal of Chemical Physics 146 (2017).
date_created: 2023-08-10T06:36:19Z
date_published: 2017-03-28T00:00:00Z
date_updated: 2023-08-22T08:30:59Z
day: '28'
doi: 10.1063/1.4977933
extern: '1'
external_id:
  pmid:
  - '28388142'
intvolume: '       146'
issue: '12'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
month: '03'
oa_version: None
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Theory of attosecond delays in molecular photoionization
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 146
year: '2017'
...
