---
OA_type: closed access
_id: '20972'
abstract:
- lang: eng
  text: Small amounts of stress are thought to have beneficial effects. A new study
    reports a mechanism by which the psychedelic drug, psilocybin, causes acute release
    of stress hormones, despite its known long-term anti-anxiety effects.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Hakan
  full_name: Kücükdereli, Hakan
  id: 5d5f6ea4-ef9e-11f0-a10a-85e12a3552af
  last_name: Kücükdereli
- first_name: Amelia May Barnett
  full_name: Douglass, Amelia May Barnett
  id: de5f6fda-80fb-11ef-996f-a8c4ecd8e289
  last_name: Douglass
  orcid: 0000-0001-5398-6473
citation:
  ama: 'Kücükdereli H, Douglass AM. Neuroscience: What doesn’t kill you makes you
    stronger. <i>Current Biology</i>. 2026;36(1):R27-R29. doi:<a href="https://doi.org/10.1016/j.cub.2025.11.056">10.1016/j.cub.2025.11.056</a>'
  apa: 'Kücükdereli, H., &#38; Douglass, A. M. (2026). Neuroscience: What doesn’t
    kill you makes you stronger. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2025.11.056">https://doi.org/10.1016/j.cub.2025.11.056</a>'
  chicago: 'Kücükdereli, Hakan, and Amelia M. Douglass. “Neuroscience: What Doesn’t
    Kill You Makes You Stronger.” <i>Current Biology</i>. Elsevier, 2026. <a href="https://doi.org/10.1016/j.cub.2025.11.056">https://doi.org/10.1016/j.cub.2025.11.056</a>.'
  ieee: 'H. Kücükdereli and A. M. Douglass, “Neuroscience: What doesn’t kill you makes
    you stronger,” <i>Current Biology</i>, vol. 36, no. 1. Elsevier, pp. R27–R29,
    2026.'
  ista: 'Kücükdereli H, Douglass AM. 2026. Neuroscience: What doesn’t kill you makes
    you stronger. Current Biology. 36(1), R27–R29.'
  mla: 'Kücükdereli, Hakan, and Amelia M. Douglass. “Neuroscience: What Doesn’t Kill
    You Makes You Stronger.” <i>Current Biology</i>, vol. 36, no. 1, Elsevier, 2026,
    pp. R27–29, doi:<a href="https://doi.org/10.1016/j.cub.2025.11.056">10.1016/j.cub.2025.11.056</a>.'
  short: H. Kücükdereli, A.M. Douglass, Current Biology 36 (2026) R27–R29.
corr_author: '1'
date_created: 2026-01-11T23:01:33Z
date_published: 2026-01-05T00:00:00Z
date_updated: 2026-01-12T10:09:13Z
day: '05'
department:
- _id: AmDo
- _id: SiHi
doi: 10.1016/j.cub.2025.11.056
external_id:
  pmid:
  - '41494523'
intvolume: '        36'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: R27-R29
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Neuroscience: What doesn’t kill you makes you stronger'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20986'
abstract:
- lang: eng
  text: During complex vocal interactions, different features of acoustic stimuli
    are integrated to produce appropriate vocal responses,1 such as copying sounds
    during vocal matching behavior in some animals.2,3,4,5,6,7,8,9,10,11,12 However,
    little is known about the interplay and possible trade-offs between the different
    temporal and spectral acoustic features during these vocal exchanges.2,13,14 Nightingales
    can flexibly match the pitch of their tonal “whistle songs” in real time during
    counter-singing duels.15,16 Here, we show that the syllable duration of whistle
    playbacks could alter the song responses of wild nightingales, causing their whistle
    duration distribution to shift toward the presented stimulus duration. When exposed
    to whistle playbacks featuring unnatural combinations of pitch and duration, nightingales
    demonstrate a flexible trade-off between pitch matching and temporal imitation,
    yet they are constrained by their vocal repertoire. They selectively adapted their
    vocal responses to approximate these novel stimuli, aligning them with their natural
    whistle repertoire. We developed a computational model of nightingale whistle-matching
    behavior that revealed a hierarchical organization of acoustic feature production.
    During whistle matching, the feature integration process is constrained by the
    duration of syllables, and pitch matching follows within this temporal framework,
    forcing a trade-off between the two features. Our findings reveal a complex interplay
    between the spectral and temporal domains that shapes song-matching behavior.
acknowledgement: 'We would like to thank J. Benichov and N. Hein for their help with
  fieldwork; M. Ramadas for helping with the segmentation analysis; T. Eliav, C. Chintaluri,
  G. Tkacik, and A. Navas for providing helpful comments to the project and manuscript;
  and A. Costalunga for the drawings of nightingales. Funding sources: The Joachim
  Herz Stiftung Add-on Fellowships for Interdisciplinary Life Science, awarded to
  G.C.; the ERC Consolidator Grant 819603 SYNAPSEEK, awarded to T.P.V.; and DFG Research
  Unit 5768–532521431, DFG Research Grant-547921981, DFG SFB 1315–327654276, and the
  ERC Starting Grant 757459 MIDNIGHT, awarded to D.V.'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Juan Sebastian
  full_name: Calderon Garcia, Juan Sebastian
  id: 1271b54b-dbcd-11ea-9d1d-d92da838fe2c
  last_name: Calderon Garcia
- first_name: Giacomo
  full_name: Costalunga, Giacomo
  last_name: Costalunga
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: Daniela
  full_name: Vallentin, Daniela
  last_name: Vallentin
citation:
  ama: Calderon Garcia JS, Costalunga G, Vogels TP, Vallentin D. Interplay between
    syllable duration and pitch during whistle matching in wild nightingales. <i>Current
    Biology</i>. 2026. doi:<a href="https://doi.org/10.1016/j.cub.2025.12.025">10.1016/j.cub.2025.12.025</a>
  apa: Calderon Garcia, J. S., Costalunga, G., Vogels, T. P., &#38; Vallentin, D.
    (2026). Interplay between syllable duration and pitch during whistle matching
    in wild nightingales. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2025.12.025">https://doi.org/10.1016/j.cub.2025.12.025</a>
  chicago: Calderon Garcia, Juan Sebastian, Giacomo Costalunga, Tim P Vogels, and
    Daniela Vallentin. “Interplay between Syllable Duration and Pitch during Whistle
    Matching in Wild Nightingales.” <i>Current Biology</i>. Elsevier, 2026. <a href="https://doi.org/10.1016/j.cub.2025.12.025">https://doi.org/10.1016/j.cub.2025.12.025</a>.
  ieee: J. S. Calderon Garcia, G. Costalunga, T. P. Vogels, and D. Vallentin, “Interplay
    between syllable duration and pitch during whistle matching in wild nightingales,”
    <i>Current Biology</i>. Elsevier, 2026.
  ista: Calderon Garcia JS, Costalunga G, Vogels TP, Vallentin D. 2026. Interplay
    between syllable duration and pitch during whistle matching in wild nightingales.
    Current Biology.
  mla: Calderon Garcia, Juan Sebastian, et al. “Interplay between Syllable Duration
    and Pitch during Whistle Matching in Wild Nightingales.” <i>Current Biology</i>,
    Elsevier, 2026, doi:<a href="https://doi.org/10.1016/j.cub.2025.12.025">10.1016/j.cub.2025.12.025</a>.
  short: J.S. Calderon Garcia, G. Costalunga, T.P. Vogels, D. Vallentin, Current Biology
    (2026).
date_created: 2026-01-14T12:00:29Z
date_published: 2026-01-12T00:00:00Z
date_updated: 2026-01-20T07:33:32Z
day: '12'
ddc:
- '570'
- '577'
department:
- _id: GradSch
- _id: TiVo
doi: 10.1016/j.cub.2025.12.025
ec_funded: 1
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cub.2025.12.025
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 0aacfa84-070f-11eb-9043-d7eb2c709234
  call_identifier: H2020
  grant_number: '819603'
  name: Learning the shape of synaptic plasticity rules for neuronal architectures
    and function through machine learning.
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Interplay between syllable duration and pitch during whistle matching in wild
  nightingales
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21490'
abstract:
- lang: eng
  text: Auxin canalization is a self-organizing process that governs the flexible
    formation of vasculature by reinforcing the formation of auxin transport channels.
    A key prerequisite is the feedback between auxin signaling and directional auxin
    transport, mediated by PIN transporters. Despite the developmental importance
    of canalization, the molecular components linking auxin perception to the regulation
    of PIN auxin transporters remain poorly understood. Here, we identify TOW, a novel
    and essential component of auxin canalization that links intracellular auxin signaling
    with cell surface auxin perception. TOW is regulated downstream of TIR1/AFB-Aux/IAA-WRKY23
    transcriptional auxin signaling. tow mutants exhibit defects in regeneration and
    de novo vasculature formation, along with impaired formation of polarized, PIN-expressing
    auxin channels. At the subcellular level, these mutants display disrupted auxin-induced
    PIN polarization and altered PIN endocytic trafficking dynamics. TOW localizes
    predominantly to the plasma membrane, where it interacts with receptor-like kinases
    involved in auxin canalization, including the TMK1 auxin co-receptor and the CAMEL-CANAR
    complex. TOW promotes PIN interaction with these kinases and stabilizes PINs at
    the cell surface. Together, our findings identify TOW as a molecular link between
    intracellular and cell surface auxin signaling mechanisms that converge on PIN
    trafficking and polarity, providing new insights into how auxin signaling regulates
    directional auxin transport for the self-organizing formation of vasculature during
    flexible plant development.
acknowledged_ssus:
- _id: MassSpec
- _id: Bio
- _id: LifeSc
acknowledgement: We thank Dr. Z. Ge (ISTA) for providing vectors for the CRISPR-Cas9
  system, Dr. Armel Nicolas and Dr. Bella Bruszel for phosphoproteomic analysis, Prof.
  Michael Wrzaczek (Czech Academy of Sciences, Czechia) for valuable suggestions,
  and Prof. Maciek Adamowski (University of Gdańsk) for technical assistance. We also
  acknowledge the support of the Mass Spectrometry and Proteomics Facility, the Imaging
  & Optics Facility, and the Lab Support Facility at the Institute of Science and
  Technology Austria. This research was supported by the Scientific Service Units
  (SSU) of ISTA, utilizing resources provided by the Imaging & Optics Facility (IOF)
  and the Lab Support Facility (LSF). The work conducted by the Friml group was funded
  by the European Research Council (ERC) under grant agreement no. 101142681 (CYNIPS)
  and by the Austrian Science Fund (FWF) under project ESP271. We acknowledge the
  core facility CELLIM supported by MEYS CR (LM2023050 Czech-BioImaging) and the Plant
  Sciences Core Facility of CEITEC Masaryk University. E.M. received support from
  the National Science Centre (NCN), Poland, through the OPUS call within the Weave
  programme (grant no. 2021/43/I/NZ1/01835). T.N. received support from TowArds Next
  GENeration Crops, reg. no. CZ.02.01.01/00/22_008/0004581 of the ERDF Programme Johannes
  Amos Comenius.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Mingyue
  full_name: Li, Mingyue
  id: 01f96916-0235-11eb-9379-a323192643b7
  last_name: Li
- first_name: Nikola
  full_name: Rydza, Nikola
  last_name: Rydza
- first_name: Ewa
  full_name: Mazur, Ewa
  last_name: Mazur
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Tomasz
  full_name: Nodzyński, Tomasz
  last_name: Nodzyński
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Li M, Rydza N, Mazur E, Molnar G, Nodzyński T, Friml J. Receptor-like-kinase-interacting
    protein TOW stabilizes PIN transporters for auxin canalization. <i>Current Biology</i>.
    2026;36(6):1468-1480.e6. doi:<a href="https://doi.org/10.1016/j.cub.2026.02.023">10.1016/j.cub.2026.02.023</a>
  apa: Li, M., Rydza, N., Mazur, E., Molnar, G., Nodzyński, T., &#38; Friml, J. (2026).
    Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for auxin
    canalization. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2026.02.023">https://doi.org/10.1016/j.cub.2026.02.023</a>
  chicago: Li, Mingyue, Nikola Rydza, Ewa Mazur, Gergely Molnar, Tomasz Nodzyński,
    and Jiří Friml. “Receptor-like-Kinase-Interacting Protein TOW Stabilizes PIN Transporters
    for Auxin Canalization.” <i>Current Biology</i>. Elsevier, 2026. <a href="https://doi.org/10.1016/j.cub.2026.02.023">https://doi.org/10.1016/j.cub.2026.02.023</a>.
  ieee: M. Li, N. Rydza, E. Mazur, G. Molnar, T. Nodzyński, and J. Friml, “Receptor-like-kinase-interacting
    protein TOW stabilizes PIN transporters for auxin canalization,” <i>Current Biology</i>,
    vol. 36, no. 6. Elsevier, p. 1468–1480.e6, 2026.
  ista: Li M, Rydza N, Mazur E, Molnar G, Nodzyński T, Friml J. 2026. Receptor-like-kinase-interacting
    protein TOW stabilizes PIN transporters for auxin canalization. Current Biology.
    36(6), 1468–1480.e6.
  mla: Li, Mingyue, et al. “Receptor-like-Kinase-Interacting Protein TOW Stabilizes
    PIN Transporters for Auxin Canalization.” <i>Current Biology</i>, vol. 36, no.
    6, Elsevier, 2026, p. 1468–1480.e6, doi:<a href="https://doi.org/10.1016/j.cub.2026.02.023">10.1016/j.cub.2026.02.023</a>.
  short: M. Li, N. Rydza, E. Mazur, G. Molnar, T. Nodzyński, J. Friml, Current Biology
    36 (2026) 1468–1480.e6.
corr_author: '1'
date_created: 2026-03-23T15:11:16Z
date_published: 2026-03-23T00:00:00Z
date_updated: 2026-03-24T08:36:40Z
day: '23'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.cub.2026.02.023
external_id:
  pmid:
  - '41831441'
file:
- access_level: open_access
  checksum: fe6c41fdab58a55df5f2a5860c02acdc
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-24T08:34:37Z
  date_updated: 2026-03-24T08:34:37Z
  file_id: '21496'
  file_name: 2026_CurrentBiology_Li.pdf
  file_size: 12986894
  relation: main_file
  success: 1
file_date_updated: 2026-03-24T08:34:37Z
has_accepted_license: '1'
intvolume: '        36'
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1468-1480.e6
pmid: 1
project:
- _id: 8f347782-16d5-11f0-9cad-8c19706ee739
  grant_number: '101142681'
  name: Cyclic nucleotides as second messengers in plants
- _id: bd906599-d553-11ed-ba76-abf8547645d7
  grant_number: E271
  name: Identification of a novel regulator in auxin canalization
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for
  auxin canalization
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21761'
abstract:
- lang: eng
  text: Neural tube closure is a critical morphogenetic process in vertebrate development,
    and failure to close cranial regions such as the hindbrain neuropore (HNP) leads
    to severe congenital malformations. While mechanical forces such as actomyosin
    purse-string contraction and directional cell crawling have been implicated in
    driving HNP closure, how these forces organize local cell shape and motion to
    produce large-scale tissue remodeling remains poorly understood. Using live and
    fixed imaging of mouse embryos combined with cell-based biophysical modeling,
    we show that these force-generating mechanisms are insufficient to explain the
    reproducible patterns of cell elongation and nematic alignment observed at the
    HNP border. Instead, we show that local anisotropic stress and cytoskeletal organization
    are required to generate these patterns and promote midline cell motion. Our model
    captures key features of cell shape dynamics and emergent nematic order, which
    we confirm experimentally, including the alignment of actin fibers with cell shape
    and enhanced midline cell speed. Comparative analysis with chick embryos, which
    lack supracellular purse strings, supports a conserved link between tension generation
    and cellular patterning. These findings establish a physical framework connecting
    force generation, cell shape anisotropy, and tissue morphodynamics during epithelial
    gap closure.
acknowledgement: S.B. acknowledges support from the National Institutes of Health
  (NIH R35 GM143042) and the National Science Foundation (NSF MCB-2203601). G.L.G.
  acknowledges support from the Wellcome Trust (211112/Z/18/Z), the Royal Society
  (RG\R2\232082), and the Leverhulme Trust (RPG-2024-147). E.M. acknowledges support
  from European Union’s Horizon 2021 Marie Sklodowska-Curie grant agreement no. 101067028.
  F.P.-V. acknowledges support from the NOMIS foundation. The surface subtraction
  macro is courtesy of Dr. Dale Moulding and available on GitHub (https://github.com/DaleMoulding/Fiji-Macros).
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Fernanda L
  full_name: Perez Verdugo, Fernanda L
  id: 4ecec223-9070-11ef-a0a9-bc76077bea8d
  last_name: Perez Verdugo
- first_name: Eirini
  full_name: Maniou, Eirini
  last_name: Maniou
- first_name: Gabriel L.
  full_name: Galea, Gabriel L.
  last_name: Galea
- first_name: Shiladitya
  full_name: Banerjee, Shiladitya
  last_name: Banerjee
citation:
  ama: Perez Verdugo FL, Maniou E, Galea GL, Banerjee S. Mechanosensitive feedback
    organizes cell shape and motion during hindbrain neuropore morphogenesis. <i>Current
    Biology</i>. 2026;36(8):1903-1917.e5. doi:<a href="https://doi.org/10.1016/j.cub.2026.02.068">10.1016/j.cub.2026.02.068</a>
  apa: Perez Verdugo, F. L., Maniou, E., Galea, G. L., &#38; Banerjee, S. (2026).
    Mechanosensitive feedback organizes cell shape and motion during hindbrain neuropore
    morphogenesis. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2026.02.068">https://doi.org/10.1016/j.cub.2026.02.068</a>
  chicago: Perez Verdugo, Fernanda L, Eirini Maniou, Gabriel L. Galea, and Shiladitya
    Banerjee. “Mechanosensitive Feedback Organizes Cell Shape and Motion during Hindbrain
    Neuropore Morphogenesis.” <i>Current Biology</i>. Elsevier, 2026. <a href="https://doi.org/10.1016/j.cub.2026.02.068">https://doi.org/10.1016/j.cub.2026.02.068</a>.
  ieee: F. L. Perez Verdugo, E. Maniou, G. L. Galea, and S. Banerjee, “Mechanosensitive
    feedback organizes cell shape and motion during hindbrain neuropore morphogenesis,”
    <i>Current Biology</i>, vol. 36, no. 8. Elsevier, p. 1903–1917.e5, 2026.
  ista: Perez Verdugo FL, Maniou E, Galea GL, Banerjee S. 2026. Mechanosensitive feedback
    organizes cell shape and motion during hindbrain neuropore morphogenesis. Current
    Biology. 36(8), 1903–1917.e5.
  mla: Perez Verdugo, Fernanda L., et al. “Mechanosensitive Feedback Organizes Cell
    Shape and Motion during Hindbrain Neuropore Morphogenesis.” <i>Current Biology</i>,
    vol. 36, no. 8, Elsevier, 2026, p. 1903–1917.e5, doi:<a href="https://doi.org/10.1016/j.cub.2026.02.068">10.1016/j.cub.2026.02.068</a>.
  short: F.L. Perez Verdugo, E. Maniou, G.L. Galea, S. Banerjee, Current Biology 36
    (2026) 1903–1917.e5.
date_created: 2026-04-26T22:01:46Z
date_published: 2026-04-20T00:00:00Z
date_updated: 2026-04-28T13:15:42Z
day: '20'
ddc:
- '570'
department:
- _id: AnSa
doi: 10.1016/j.cub.2026.02.068
external_id:
  pmid:
  - '41881011'
file:
- access_level: open_access
  checksum: 80ae45457b4682c50c84f54de15aa9a8
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-28T13:13:40Z
  date_updated: 2026-04-28T13:13:40Z
  file_id: '21774'
  file_name: 2026_CurrentBiology_PerezVerdugo.pdf
  file_size: 13402043
  relation: main_file
  success: 1
file_date_updated: 2026-04-28T13:13:40Z
has_accepted_license: '1'
intvolume: '        36'
issue: '8'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1903-1917.e5
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanosensitive feedback organizes cell shape and motion during hindbrain
  neuropore morphogenesis
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2026'
...
---
_id: '14479'
abstract:
- lang: eng
  text: 'In animals, parasitic infections impose significant fitness costs.1,2,3,4,5,6
    Infected animals can alter their feeding behavior to resist infection,7,8,9,10,11,12
    but parasites can manipulate animal foraging behavior to their own benefits.13,14,15,16
    How nutrition influences host-parasite interactions is not well understood, as
    studies have mainly focused on the host and less on the parasite.9,12,17,18,19,20,21,22,23
    We used the nutritional geometry framework24 to investigate the role of amino
    acids (AA) and carbohydrates (C) in a host-parasite system: the Argentine ant,
    Linepithema humile, and the entomopathogenic fungus, Metarhizium brunneum. First,
    using 18 diets varying in AA:C composition, we established that the fungus performed
    best on the high-amino-acid diet 1:4. Second, we found that the fungus reached
    this optimal diet when given various diet pairings, revealing its ability to cope
    with nutritional challenges. Third, we showed that the optimal fungal diet reduced
    the lifespan of healthy ants when compared with a high-carbohydrate diet but had
    no effect on infected ants. Fourth, we revealed that infected ant colonies, given
    a choice between the optimal fungal diet and a high-carbohydrate diet, chose the
    optimal fungal diet, whereas healthy colonies avoided it. Lastly, by disentangling
    fungal infection from host immune response, we demonstrated that infected ants
    foraged on the optimal fungal diet in response to immune activation and not as
    a result of parasite manipulation. Therefore, we revealed that infected ant colonies
    chose a diet that is costly for survival in the long term but beneficial in the
    short term—a form of collective self-medication.'
acknowledgement: We are sincerely grateful to the referees for their valuable comments
  and suggestions, which helped us to improve the paper. We are thankful to Jorgen
  Eilenberg and Nicolai V. Meyling for the fungal strain, to Simon Tragust, Abel Bernadou,
  and Brian Lazarro for insightful discussions, to Iago Sanmartín-Villar, Léa Briard,
  Céline Maitrel, and Nolwenn Rissen for their help with the experiments. Furthermore,
  we thank Anna V. Grasse for help with the immune gene expression analyses. We thank
  Sergio Ibarra for creating the graphical abstract. E.C. was supported by a Fyssen
  Foundation grant and the Alexander von Humboldt Foundation. A.D. was supported by
  the CNRS.
article_processing_charge: No
article_type: original
author:
- first_name: Eniko
  full_name: Csata, Eniko
  last_name: Csata
- first_name: Alfonso
  full_name: Perez-Escudero, Alfonso
  last_name: Perez-Escudero
- first_name: Emmanuel
  full_name: Laury, Emmanuel
  last_name: Laury
- first_name: Hanna
  full_name: Leitner, Hanna
  id: 8fc5c6f6-5903-11ec-abad-c83f046253e7
  last_name: Leitner
- first_name: Gerard
  full_name: Latil, Gerard
  last_name: Latil
- first_name: Juerge
  full_name: Heinze, Juerge
  last_name: Heinze
- first_name: Stephen
  full_name: Simpson, Stephen
  last_name: Simpson
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
- first_name: Audrey
  full_name: Dussutour, Audrey
  last_name: Dussutour
citation:
  ama: Csata E, Perez-Escudero A, Laury E, et al. Fungal infection alters collective
    nutritional intake of ant colonies. <i>Current Biology</i>. 2024;34(4):902-909.e6.
    doi:<a href="https://doi.org/10.1016/j.cub.2024.01.017">10.1016/j.cub.2024.01.017</a>
  apa: Csata, E., Perez-Escudero, A., Laury, E., Leitner, H., Latil, G., Heinze, J.,
    … Dussutour, A. (2024). Fungal infection alters collective nutritional intake
    of ant colonies. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2024.01.017">https://doi.org/10.1016/j.cub.2024.01.017</a>
  chicago: Csata, Eniko, Alfonso Perez-Escudero, Emmanuel Laury, Hanna Leitner, Gerard
    Latil, Juerge Heinze, Stephen Simpson, Sylvia Cremer, and Audrey Dussutour. “Fungal
    Infection Alters Collective Nutritional Intake of Ant Colonies.” <i>Current Biology</i>.
    Elsevier, 2024. <a href="https://doi.org/10.1016/j.cub.2024.01.017">https://doi.org/10.1016/j.cub.2024.01.017</a>.
  ieee: E. Csata <i>et al.</i>, “Fungal infection alters collective nutritional intake
    of ant colonies,” <i>Current Biology</i>, vol. 34, no. 4. Elsevier, p. 902–909.e6,
    2024.
  ista: Csata E, Perez-Escudero A, Laury E, Leitner H, Latil G, Heinze J, Simpson
    S, Cremer S, Dussutour A. 2024. Fungal infection alters collective nutritional
    intake of ant colonies. Current Biology. 34(4), 902–909.e6.
  mla: Csata, Eniko, et al. “Fungal Infection Alters Collective Nutritional Intake
    of Ant Colonies.” <i>Current Biology</i>, vol. 34, no. 4, Elsevier, 2024, p. 902–909.e6,
    doi:<a href="https://doi.org/10.1016/j.cub.2024.01.017">10.1016/j.cub.2024.01.017</a>.
  short: E. Csata, A. Perez-Escudero, E. Laury, H. Leitner, G. Latil, J. Heinze, S.
    Simpson, S. Cremer, A. Dussutour, Current Biology 34 (2024) 902–909.e6.
date_created: 2023-10-31T13:30:20Z
date_published: 2024-02-26T00:00:00Z
date_updated: 2025-08-05T13:29:38Z
day: '26'
department:
- _id: SyCr
doi: 10.1016/j.cub.2024.01.017
external_id:
  isi:
  - '001195884300001'
  pmid:
  - '38307022'
intvolume: '        34'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2023.10.26.564092
month: '02'
oa: 1
oa_version: Preprint
page: 902-909.e6
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fungal infection alters collective nutritional intake of ant colonies
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2024'
...
---
OA_type: closed access
_id: '18651'
abstract:
- lang: eng
  text: Embryo axis formation begins with the localized expression of biochemical
    signals, which organize cell movements and determine cell fate. A quail study
    finds that tissue contraction and resulting long-range changes in tissue tension
    restrict the area where these biochemical signals are expressed.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Naoya
  full_name: Hino, Naoya
  id: 5299a9ce-7679-11eb-a7bc-d1e62b936307
  last_name: Hino
- first_name: Carolina
  full_name: Santos Fernandes Lasbarrères Camelo, Carolina
  id: 6347dca5-074c-11ed-af92-a80f860d9d5b
  last_name: Santos Fernandes Lasbarrères Camelo
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: 'Hino N, Santos Fernandes Lasbarrères Camelo C, Heisenberg C-PJ. Development:
    Turing mechanics. <i>Current Biology</i>. 2024;34(24):R1230-R1232. doi:<a href="https://doi.org/10.1016/j.cub.2024.10.065">10.1016/j.cub.2024.10.065</a>'
  apa: 'Hino, N., Santos Fernandes Lasbarrères Camelo, C., &#38; Heisenberg, C.-P.
    J. (2024). Development: Turing mechanics. <i>Current Biology</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.cub.2024.10.065">https://doi.org/10.1016/j.cub.2024.10.065</a>'
  chicago: 'Hino, Naoya, Carolina Santos Fernandes Lasbarrères Camelo, and Carl-Philipp
    J Heisenberg. “Development: Turing Mechanics.” <i>Current Biology</i>. Elsevier,
    2024. <a href="https://doi.org/10.1016/j.cub.2024.10.065">https://doi.org/10.1016/j.cub.2024.10.065</a>.'
  ieee: 'N. Hino, C. Santos Fernandes Lasbarrères Camelo, and C.-P. J. Heisenberg,
    “Development: Turing mechanics,” <i>Current Biology</i>, vol. 34, no. 24. Elsevier,
    pp. R1230–R1232, 2024.'
  ista: 'Hino N, Santos Fernandes Lasbarrères Camelo C, Heisenberg C-PJ. 2024. Development:
    Turing mechanics. Current Biology. 34(24), R1230–R1232.'
  mla: 'Hino, Naoya, et al. “Development: Turing Mechanics.” <i>Current Biology</i>,
    vol. 34, no. 24, Elsevier, 2024, pp. R1230–32, doi:<a href="https://doi.org/10.1016/j.cub.2024.10.065">10.1016/j.cub.2024.10.065</a>.'
  short: N. Hino, C. Santos Fernandes Lasbarrères Camelo, C.-P.J. Heisenberg, Current
    Biology 34 (2024) R1230–R1232.
corr_author: '1'
date_created: 2024-12-15T23:01:49Z
date_published: 2024-12-16T00:00:00Z
date_updated: 2025-09-09T11:51:15Z
day: '16'
department:
- _id: CaHe
doi: 10.1016/j.cub.2024.10.065
external_id:
  isi:
  - '001392077000001'
  pmid:
  - '39689690'
intvolume: '        34'
isi: 1
issue: '24'
language:
- iso: eng
month: '12'
oa_version: None
page: R1230-R1232
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Development: Turing mechanics'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 34
year: '2024'
...
---
_id: '14795'
abstract:
- lang: eng
  text: Metazoan development relies on the formation and remodeling of cell-cell contacts.
    Dynamic reorganization of adhesion receptors and the actomyosin cell cortex in
    space and time plays a central role in cell-cell contact formation and maturation.
    Nevertheless, how this process is mechanistically achieved when new contacts are
    formed remains unclear. Here, by building a biomimetic assay composed of progenitor
    cells adhering to supported lipid bilayers functionalized with E-cadherin ectodomains,
    we show that cortical F-actin flows, driven by the depletion of myosin-2 at the
    cell contact center, mediate the dynamic reorganization of adhesion receptors
    and cell cortex at the contact. E-cadherin-dependent downregulation of the small
    GTPase RhoA at the forming contact leads to both a depletion of myosin-2 and a
    decrease of F-actin at the contact center. At the contact rim, in contrast, myosin-2
    becomes enriched by the retraction of bleb-like protrusions, resulting in a cortical
    tension gradient from the contact rim to its center. This tension gradient, in
    turn, triggers centrifugal F-actin flows, leading to further accumulation of F-actin
    at the contact rim and the progressive redistribution of E-cadherin from the contact
    center to the rim. Eventually, this combination of actomyosin downregulation and
    flows at the contact determines the characteristic molecular organization, with
    E-cadherin and F-actin accumulating at the contact rim, where they are needed
    to mechanically link the contractile cortices of the adhering cells.
acknowledged_ssus:
- _id: Bio
- _id: PreCl
acknowledgement: "We are grateful to Edwin Munro for their feedback and help with
  the single particle analysis. We thank members of the Heisenberg and Loose labs
  for their help and feedback on the manuscript, notably Xin Tong for making the PCS2-mCherry-AHPH
  plasmid. Finally, we thank the Aquatics and Imaging & Optics facilities of ISTA
  for their continuous support, especially Yann Cesbron for assistance with the laser
  cutter. This work was supported by an ERC\r\nAdvanced Grant (MECSPEC) to C.-P.H."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Feyza N
  full_name: Arslan, Feyza N
  id: 49DA7910-F248-11E8-B48F-1D18A9856A87
  last_name: Arslan
  orcid: 0000-0001-5809-9566
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: Arslan FN, Hannezo EB, Merrin J, Loose M, Heisenberg C-PJ. Adhesion-induced
    cortical flows pattern E-cadherin-mediated cell contacts. <i>Current Biology</i>.
    2024;34(1):171-182.e8. doi:<a href="https://doi.org/10.1016/j.cub.2023.11.067">10.1016/j.cub.2023.11.067</a>
  apa: Arslan, F. N., Hannezo, E. B., Merrin, J., Loose, M., &#38; Heisenberg, C.-P.
    J. (2024). Adhesion-induced cortical flows pattern E-cadherin-mediated cell contacts.
    <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2023.11.067">https://doi.org/10.1016/j.cub.2023.11.067</a>
  chicago: Arslan, Feyza N, Edouard B Hannezo, Jack Merrin, Martin Loose, and Carl-Philipp
    J Heisenberg. “Adhesion-Induced Cortical Flows Pattern E-Cadherin-Mediated Cell
    Contacts.” <i>Current Biology</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.cub.2023.11.067">https://doi.org/10.1016/j.cub.2023.11.067</a>.
  ieee: F. N. Arslan, E. B. Hannezo, J. Merrin, M. Loose, and C.-P. J. Heisenberg,
    “Adhesion-induced cortical flows pattern E-cadherin-mediated cell contacts,” <i>Current
    Biology</i>, vol. 34, no. 1. Elsevier, p. 171–182.e8, 2024.
  ista: Arslan FN, Hannezo EB, Merrin J, Loose M, Heisenberg C-PJ. 2024. Adhesion-induced
    cortical flows pattern E-cadherin-mediated cell contacts. Current Biology. 34(1),
    171–182.e8.
  mla: Arslan, Feyza N., et al. “Adhesion-Induced Cortical Flows Pattern E-Cadherin-Mediated
    Cell Contacts.” <i>Current Biology</i>, vol. 34, no. 1, Elsevier, 2024, p. 171–182.e8,
    doi:<a href="https://doi.org/10.1016/j.cub.2023.11.067">10.1016/j.cub.2023.11.067</a>.
  short: F.N. Arslan, E.B. Hannezo, J. Merrin, M. Loose, C.-P.J. Heisenberg, Current
    Biology 34 (2024) 171–182.e8.
corr_author: '1'
date_created: 2024-01-14T23:00:56Z
date_published: 2024-01-08T00:00:00Z
date_updated: 2025-09-04T11:39:10Z
day: '08'
ddc:
- '570'
department:
- _id: CaHe
- _id: EdHa
- _id: MaLo
- _id: NanoFab
doi: 10.1016/j.cub.2023.11.067
ec_funded: 1
external_id:
  isi:
  - '001154500400001'
  pmid:
  - '38134934'
file:
- access_level: open_access
  checksum: 51220b76d72a614208f84bdbfbaf9b72
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T10:53:31Z
  date_updated: 2024-01-16T10:53:31Z
  file_id: '14813'
  file_name: 2024_CurrentBiology_Arslan.pdf
  file_size: 5183861
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T10:53:31Z
has_accepted_license: '1'
intvolume: '        34'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 171-182.e8
pmid: 1
project:
- _id: 260F1432-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742573'
  name: Interaction and feedback between cell mechanics and fate specification in
    vertebrate gastrulation
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Adhesion-induced cortical flows pattern E-cadherin-mediated cell contacts
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 34
year: '2024'
...
---
_id: '11351'
abstract:
- lang: eng
  text: 'One hallmark of plant cells is their cell wall. They protect cells against
    the environment and high turgor and mediate morphogenesis through the dynamics
    of their mechanical and chemical properties. The walls are a complex polysaccharidic
    structure. Although their biochemical composition is well known, how the different
    components organize in the volume of the cell wall and interact with each other
    is not well understood and yet is key to the wall’s mechanical properties. To
    investigate the ultrastructure of the plant cell wall, we imaged the walls of
    onion (Allium cepa) bulbs in a near-native state via cryo-focused ion beam milling
    (cryo-FIB milling) and cryo-electron tomography (cryo-ET). This allowed the high-resolution
    visualization of cellulose fibers in situ. We reveal the coexistence of dense
    fiber fields bathed in a reticulated matrix we termed “meshing,” which is more
    abundant at the inner surface of the cell wall. The fibers adopted a regular bimodal
    angular distribution at all depths in the cell wall and bundled according to their
    orientation, creating layers within the cell wall. Concomitantly, employing homogalacturonan
    (HG)-specific enzymatic digestion, we observed changes in the meshing, suggesting
    that it is—at least in part—composed of HG pectins. We propose the following model
    for the construction of the abaxial epidermal primary cell wall: the cell deposits
    successive layers of cellulose fibers at −45° and +45° relative to the cell’s
    long axis and secretes the surrounding HG-rich meshing proximal to the plasma
    membrane, which then migrates to more distal regions of the cell wall.'
acknowledgement: This work was supported by the Howard Hughes Medical Institute (HHMI)
  and grant R35 GM122588 to G.J. and the Austrian Science Fund (FWF) P33367 to F.K.M.S.
  We thank Noé Cochetel for his guidance and great help in data analysis, discovery,
  and representation with the R software. We thank Hans-Ulrich Endress for graciously
  providing us with the purified citrus pectin and Jozef Mravec for generating and
  providing the COS488 probe. Cryo-EM work was done in the Beckman Institute Resource
  Center for Transmission Electron Microscopy at Caltech. This article is subject
  to HHMI’s Open Access to Publications policy. HHMI lab heads have previously granted
  a nonexclusive CC BY 4.0 license to the public and a sublicensable license to HHMI
  in their research articles. Pursuant to those licenses, the author accepted manuscript
  of this article can be made freely available under a CC BY 4.0 license immediately
  upon publication.
article_processing_charge: No
article_type: original
author:
- first_name: William J.
  full_name: Nicolas, William J.
  last_name: Nicolas
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Przemysław
  full_name: Dutka, Przemysław
  last_name: Dutka
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
- first_name: Grant
  full_name: Jensen, Grant
  last_name: Jensen
- first_name: Elliot
  full_name: Meyerowitz, Elliot
  last_name: Meyerowitz
citation:
  ama: Nicolas WJ, Fäßler F, Dutka P, Schur FK, Jensen G, Meyerowitz E. Cryo-electron
    tomography of the onion cell wall shows bimodally oriented cellulose fibers and
    reticulated homogalacturonan networks. <i>Current Biology</i>. 2022;32(11):P2375-2389.
    doi:<a href="https://doi.org/10.1016/j.cub.2022.04.024">10.1016/j.cub.2022.04.024</a>
  apa: Nicolas, W. J., Fäßler, F., Dutka, P., Schur, F. K., Jensen, G., &#38; Meyerowitz,
    E. (2022). Cryo-electron tomography of the onion cell wall shows bimodally oriented
    cellulose fibers and reticulated homogalacturonan networks. <i>Current Biology</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.cub.2022.04.024">https://doi.org/10.1016/j.cub.2022.04.024</a>
  chicago: Nicolas, William J., Florian Fäßler, Przemysław Dutka, Florian KM Schur,
    Grant Jensen, and Elliot Meyerowitz. “Cryo-Electron Tomography of the Onion Cell
    Wall Shows Bimodally Oriented Cellulose Fibers and Reticulated Homogalacturonan
    Networks.” <i>Current Biology</i>. Elsevier, 2022. <a href="https://doi.org/10.1016/j.cub.2022.04.024">https://doi.org/10.1016/j.cub.2022.04.024</a>.
  ieee: W. J. Nicolas, F. Fäßler, P. Dutka, F. K. Schur, G. Jensen, and E. Meyerowitz,
    “Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose
    fibers and reticulated homogalacturonan networks,” <i>Current Biology</i>, vol.
    32, no. 11. Elsevier, pp. P2375-2389, 2022.
  ista: Nicolas WJ, Fäßler F, Dutka P, Schur FK, Jensen G, Meyerowitz E. 2022. Cryo-electron
    tomography of the onion cell wall shows bimodally oriented cellulose fibers and
    reticulated homogalacturonan networks. Current Biology. 32(11), P2375-2389.
  mla: Nicolas, William J., et al. “Cryo-Electron Tomography of the Onion Cell Wall
    Shows Bimodally Oriented Cellulose Fibers and Reticulated Homogalacturonan Networks.”
    <i>Current Biology</i>, vol. 32, no. 11, Elsevier, 2022, pp. P2375-2389, doi:<a
    href="https://doi.org/10.1016/j.cub.2022.04.024">10.1016/j.cub.2022.04.024</a>.
  short: W.J. Nicolas, F. Fäßler, P. Dutka, F.K. Schur, G. Jensen, E. Meyerowitz,
    Current Biology 32 (2022) P2375-2389.
date_created: 2022-05-04T06:22:06Z
date_published: 2022-06-06T00:00:00Z
date_updated: 2025-04-15T08:25:40Z
day: '06'
ddc:
- '570'
department:
- _id: FlSc
doi: 10.1016/j.cub.2022.04.024
external_id:
  isi:
  - '000822399200019'
  pmid:
  - '35508170'
file:
- access_level: open_access
  checksum: af3f24d97c016d844df237abef987639
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-05T06:29:18Z
  date_updated: 2022-08-05T06:29:18Z
  file_id: '11730'
  file_name: 2022_CurrentBiology_Nicolas.pdf
  file_size: 12827717
  relation: main_file
  success: 1
file_date_updated: 2022-08-05T06:29:18Z
has_accepted_license: '1'
intvolume: '        32'
isi: 1
issue: '11'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: P2375-2389
pmid: 1
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
  grant_number: P33367
  name: Structure and isoform diversity of the Arp2/3 complex
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose
  fibers and reticulated homogalacturonan networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 32
year: '2022'
...
---
_id: '10834'
abstract:
- lang: eng
  text: Hematopoietic-specific protein 1 (Hem1) is an essential subunit of the WAVE
    regulatory complex (WRC) in immune cells. WRC is crucial for Arp2/3 complex activation
    and the protrusion of branched actin filament networks. Moreover, Hem1 loss of
    function in immune cells causes autoimmune diseases in humans. Here, we show that
    genetic removal of Hem1 in macrophages diminishes frequency and efficacy of phagocytosis
    as well as phagocytic cup formation in addition to defects in lamellipodial protrusion
    and migration. Moreover, Hem1-null macrophages displayed strong defects in cell
    adhesion despite unaltered podosome formation and concomitant extracellular matrix
    degradation. Specifically, dynamics of both adhesion and de-adhesion as well as
    concomitant phosphorylation of paxillin and focal adhesion kinase (FAK) were significantly
    compromised. Accordingly, disruption of WRC function in non-hematopoietic cells
    coincided with both defects in adhesion turnover and altered FAK and paxillin
    phosphorylation. Consistently, platelets exhibited reduced adhesion and diminished
    integrin αIIbβ3 activation upon WRC removal. Interestingly, adhesion phenotypes,
    but not lamellipodia formation, were partially rescued by small molecule activation
    of FAK. A full rescue of the phenotype, including lamellipodia formation, required
    not only the presence of WRCs but also their binding to and activation by Rac.
    Collectively, our results uncover that WRC impacts on integrin-dependent processes
    in a FAK-dependent manner, controlling formation and dismantling of adhesions,
    relevant for properly grabbing onto extracellular surfaces and particles during
    cell edge expansion, like in migration or phagocytosis.
acknowledgement: We are grateful to Silvia Prettin, Ina Schleicher, and Petra Hagendorff
  for expert technical assistance; David Dettbarn for animal keeping and breeding;
  and Lothar Gröbe and Maria Höxter for cell sorting. We also thank Werner Tegge for
  peptides and Giorgio Scita for antibodies. This work was supported, in part, by
  the Deutsche Forschungsgemeinschaft (DFG), Priority Programm SPP1150 (to T.E.B.S.,
  K.R., and M. Sixt), and by DFG grant GRK2223/1 (to K.R.). T.E.B.S. acknowledges
  support by the Helmholtz Society through HGF impulse fund W2/W3-066 and M. Schnoor
  by the Mexican Council for Science and Technology (CONACyT, 284292 ), Fund SEP-Cinvestav
  ( 108 ), and the Royal Society, UK (Newton Advanced Fellowship, NAF/R1/180017 ).
article_processing_charge: No
article_type: original
author:
- first_name: Stephanie
  full_name: Stahnke, Stephanie
  last_name: Stahnke
- first_name: Hermann
  full_name: Döring, Hermann
  last_name: Döring
- first_name: Charly
  full_name: Kusch, Charly
  last_name: Kusch
- first_name: David J.J.
  full_name: de Gorter, David J.J.
  last_name: de Gorter
- first_name: Sebastian
  full_name: Dütting, Sebastian
  last_name: Dütting
- first_name: Aleks
  full_name: Guledani, Aleks
  last_name: Guledani
- first_name: Irina
  full_name: Pleines, Irina
  last_name: Pleines
- first_name: Michael
  full_name: Schnoor, Michael
  last_name: Schnoor
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Robert
  full_name: Geffers, Robert
  last_name: Geffers
- first_name: Manfred
  full_name: Rohde, Manfred
  last_name: Rohde
- first_name: Mathias
  full_name: Müsken, Mathias
  last_name: Müsken
- first_name: Frieda
  full_name: Kage, Frieda
  last_name: Kage
- first_name: Anika
  full_name: Steffen, Anika
  last_name: Steffen
- first_name: Jan
  full_name: Faix, Jan
  last_name: Faix
- first_name: Bernhard
  full_name: Nieswandt, Bernhard
  last_name: Nieswandt
- first_name: Klemens
  full_name: Rottner, Klemens
  last_name: Rottner
- first_name: Theresia E.B.
  full_name: Stradal, Theresia E.B.
  last_name: Stradal
citation:
  ama: Stahnke S, Döring H, Kusch C, et al. Loss of Hem1 disrupts macrophage function
    and impacts migration, phagocytosis, and integrin-mediated adhesion. <i>Current
    Biology</i>. 2021;31(10):2051-2064.e8. doi:<a href="https://doi.org/10.1016/j.cub.2021.02.043">10.1016/j.cub.2021.02.043</a>
  apa: Stahnke, S., Döring, H., Kusch, C., de Gorter, D. J. J., Dütting, S., Guledani,
    A., … Stradal, T. E. B. (2021). Loss of Hem1 disrupts macrophage function and
    impacts migration, phagocytosis, and integrin-mediated adhesion. <i>Current Biology</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.cub.2021.02.043">https://doi.org/10.1016/j.cub.2021.02.043</a>
  chicago: Stahnke, Stephanie, Hermann Döring, Charly Kusch, David J.J. de Gorter,
    Sebastian Dütting, Aleks Guledani, Irina Pleines, et al. “Loss of Hem1 Disrupts
    Macrophage Function and Impacts Migration, Phagocytosis, and Integrin-Mediated
    Adhesion.” <i>Current Biology</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.cub.2021.02.043">https://doi.org/10.1016/j.cub.2021.02.043</a>.
  ieee: S. Stahnke <i>et al.</i>, “Loss of Hem1 disrupts macrophage function and impacts
    migration, phagocytosis, and integrin-mediated adhesion,” <i>Current Biology</i>,
    vol. 31, no. 10. Elsevier, p. 2051–2064.e8, 2021.
  ista: Stahnke S, Döring H, Kusch C, de Gorter DJJ, Dütting S, Guledani A, Pleines
    I, Schnoor M, Sixt MK, Geffers R, Rohde M, Müsken M, Kage F, Steffen A, Faix J,
    Nieswandt B, Rottner K, Stradal TEB. 2021. Loss of Hem1 disrupts macrophage function
    and impacts migration, phagocytosis, and integrin-mediated adhesion. Current Biology.
    31(10), 2051–2064.e8.
  mla: Stahnke, Stephanie, et al. “Loss of Hem1 Disrupts Macrophage Function and Impacts
    Migration, Phagocytosis, and Integrin-Mediated Adhesion.” <i>Current Biology</i>,
    vol. 31, no. 10, Elsevier, 2021, p. 2051–2064.e8, doi:<a href="https://doi.org/10.1016/j.cub.2021.02.043">10.1016/j.cub.2021.02.043</a>.
  short: S. Stahnke, H. Döring, C. Kusch, D.J.J. de Gorter, S. Dütting, A. Guledani,
    I. Pleines, M. Schnoor, M.K. Sixt, R. Geffers, M. Rohde, M. Müsken, F. Kage, A.
    Steffen, J. Faix, B. Nieswandt, K. Rottner, T.E.B. Stradal, Current Biology 31
    (2021) 2051–2064.e8.
date_created: 2022-03-08T07:51:04Z
date_published: 2021-05-24T00:00:00Z
date_updated: 2023-08-17T07:01:14Z
day: '24'
department:
- _id: MiSi
doi: 10.1016/j.cub.2021.02.043
external_id:
  isi:
  - '000654652200002'
  pmid:
  - '33711252'
intvolume: '        31'
isi: 1
issue: '10'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2020.03.24.005835
month: '05'
oa: 1
oa_version: Preprint
page: 2051-2064.e8
pmid: 1
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Loss of Hem1 disrupts macrophage function and impacts migration, phagocytosis,
  and integrin-mediated adhesion
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 31
year: '2021'
...
---
_id: '8824'
abstract:
- lang: eng
  text: Plants are able to orient their growth according to gravity, which ultimately
    controls both shoot and root architecture.1 Gravitropism is a dynamic process
    whereby gravistimulation induces the asymmetric distribution of the plant hormone
    auxin, leading to asymmetric growth, organ bending, and subsequent reset of auxin
    distribution back to the original pre-gravistimulation situation.1,  2,  3 Differential
    auxin accumulation during the gravitropic response depends on the activity of
    polarly localized PIN-FORMED (PIN) auxin-efflux carriers.1,  2,  3,  4 In particular,
    the timing of this dynamic response is regulated by PIN2,5,6 but the underlying
    molecular mechanisms are poorly understood. Here, we show that MEMBRANE ASSOCIATED
    KINASE REGULATOR2 (MAKR2) controls the pace of the root gravitropic response.
    We found that MAKR2 is required for the PIN2 asymmetry during gravitropism by
    acting as a negative regulator of the cell-surface signaling mediated by the receptor-like
    kinase TRANSMEMBRANE KINASE1 (TMK1).2,7,  8,  9,  10 Furthermore, we show that
    the MAKR2 inhibitory effect on TMK1 signaling is antagonized by auxin itself,
    which triggers rapid MAKR2 membrane dissociation in a TMK1-dependent manner. Our
    findings suggest that the timing of the root gravitropic response is orchestrated
    by the reversible inhibition of the TMK1 signaling pathway at the cell surface.
acknowledgement: "We thank the SiCE group for discussions and comments; S. Yalovsky,
  B. Scheres, and the NASC/ABRC collection for providing transgenic Arabidopsis lines
  and plasmids; L. Kalmbach and M. Barberon for the gift of pLOK180_pFR7m34GW; A.
  Lacroix, J. Berger, and P. Bolland for plant care; and M. Fendrych for help with
  microfluidics in the J.F. lab. We acknowledge\r\nthe contribution of the SFR Biosciences
  (UMS3444/CNRS, US8/Inser m, ENS de Lyon, UCBL) facilities: C. Lionet, E. Chatre,
  and J. Brocard at LBIPLATIM-MICROSCOPY for assistance with imaging, and V. GuegenChaignon
  and A. Page at the Protein Science Facility (PSF) for assistance with protein purification
  and mass spectrometry. Y.J. was funded by ERC\r\ngrant 3363360-APPL under FP/2007–2013.
  Y.J. and Z.L.N. were funded by an ANR- and NSF-supported ERA-CAPS project (SICOPID:
  ANR-17-CAPS0003-01/NSF PGRP IOS-1841917). A.I.C.-D. is funded by an ERC consolidator
  grant (ERC-2015-CoG–683163) and BIO2016-78955 grant from the Spanish Ministry of
  Economy and Competitiveness. Exchanges between the Y.J. and T.B. laboratories were
  funded by Tournesol grant 35656NB. B.K.M. was\r\nfunded by the Omics@vib Marie Curie
  COFUND and Research Foundation Flanders for a postdoctoral fellowship."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: MM
  full_name: Marquès-Bueno, MM
  last_name: Marquès-Bueno
- first_name: L
  full_name: Armengot, L
  last_name: Armengot
- first_name: LC
  full_name: Noack, LC
  last_name: Noack
- first_name: J
  full_name: Bareille, J
  last_name: Bareille
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: MP
  full_name: Platre, MP
  last_name: Platre
- first_name: V
  full_name: Bayle, V
  last_name: Bayle
- first_name: M
  full_name: Liu, M
  last_name: Liu
- first_name: D
  full_name: Opdenacker, D
  last_name: Opdenacker
- first_name: S
  full_name: Vanneste, S
  last_name: Vanneste
- first_name: BK
  full_name: Möller, BK
  last_name: Möller
- first_name: ZL
  full_name: Nimchuk, ZL
  last_name: Nimchuk
- first_name: T
  full_name: Beeckman, T
  last_name: Beeckman
- first_name: AI
  full_name: Caño-Delgado, AI
  last_name: Caño-Delgado
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Y
  full_name: Jaillais, Y
  last_name: Jaillais
citation:
  ama: Marquès-Bueno M, Armengot L, Noack L, et al. Auxin-regulated reversible inhibition
    of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. <i>Current
    Biology</i>. 2021;31(1). doi:<a href="https://doi.org/10.1016/j.cub.2020.10.011">10.1016/j.cub.2020.10.011</a>
  apa: Marquès-Bueno, M., Armengot, L., Noack, L., Bareille, J., Rodriguez Solovey,
    L., Platre, M., … Jaillais, Y. (2021). Auxin-regulated reversible inhibition of
    TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. <i>Current
    Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2020.10.011">https://doi.org/10.1016/j.cub.2020.10.011</a>
  chicago: Marquès-Bueno, MM, L Armengot, LC Noack, J Bareille, Lesia Rodriguez Solovey,
    MP Platre, V Bayle, et al. “Auxin-Regulated Reversible Inhibition of TMK1 Signaling
    by MAKR2 Modulates the Dynamics of Root Gravitropism.” <i>Current Biology</i>.
    Elsevier, 2021. <a href="https://doi.org/10.1016/j.cub.2020.10.011">https://doi.org/10.1016/j.cub.2020.10.011</a>.
  ieee: M. Marquès-Bueno <i>et al.</i>, “Auxin-regulated reversible inhibition of
    TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism,” <i>Current
    Biology</i>, vol. 31, no. 1. Elsevier, 2021.
  ista: Marquès-Bueno M, Armengot L, Noack L, Bareille J, Rodriguez Solovey L, Platre
    M, Bayle V, Liu M, Opdenacker D, Vanneste S, Möller B, Nimchuk Z, Beeckman T,
    Caño-Delgado A, Friml J, Jaillais Y. 2021. Auxin-regulated reversible inhibition
    of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. Current
    Biology. 31(1).
  mla: Marquès-Bueno, MM, et al. “Auxin-Regulated Reversible Inhibition of TMK1 Signaling
    by MAKR2 Modulates the Dynamics of Root Gravitropism.” <i>Current Biology</i>,
    vol. 31, no. 1, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.cub.2020.10.011">10.1016/j.cub.2020.10.011</a>.
  short: M. Marquès-Bueno, L. Armengot, L. Noack, J. Bareille, L. Rodriguez Solovey,
    M. Platre, V. Bayle, M. Liu, D. Opdenacker, S. Vanneste, B. Möller, Z. Nimchuk,
    T. Beeckman, A. Caño-Delgado, J. Friml, Y. Jaillais, Current Biology 31 (2021).
date_created: 2020-12-01T13:39:46Z
date_published: 2021-01-11T00:00:00Z
date_updated: 2024-10-21T06:02:09Z
day: '11'
ddc:
- '570'
department:
- _id: JiFr
doi: 10.1016/j.cub.2020.10.011
external_id:
  isi:
  - '000614361000039'
  pmid:
  - '33157019'
file:
- access_level: open_access
  checksum: 30b3393d841fb2b1e2b22fb42b5c8fff
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-04T11:37:50Z
  date_updated: 2021-02-04T11:37:50Z
  file_id: '9090'
  file_name: 2021_CurrentBiology_MarquesBueno.pdf
  file_size: 3458646
  relation: main_file
  success: 1
file_date_updated: 2021-02-04T11:37:50Z
has_accepted_license: '1'
intvolume: '        31'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates
  the dynamics of root gravitropism
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 31
year: '2021'
...
---
_id: '9290'
abstract:
- lang: eng
  text: Polar subcellular localization of the PIN exporters of the phytohormone auxin
    is a key determinant of directional, intercellular auxin transport and thus a
    central topic of both plant cell and developmental biology. Arabidopsis mutants
    lacking PID, a kinase that phosphorylates PINs, or the MAB4/MEL proteins of unknown
    molecular function display PIN polarity defects and phenocopy pin mutants, but
    mechanistic insights into how these factors convey PIN polarity are missing. Here,
    by combining protein biochemistry with quantitative live-cell imaging, we demonstrate
    that PINs, MAB4/MELs, and AGC kinases interact in the same complex at the plasma
    membrane. MAB4/MELs are recruited to the plasma membrane by the PINs and in concert
    with the AGC kinases maintain PIN polarity through limiting lateral diffusion-based
    escape of PINs from the polar domain. The PIN-MAB4/MEL-PID protein complex has
    self-reinforcing properties thanks to positive feedback between AGC kinase-mediated
    PIN phosphorylation and MAB4/MEL recruitment. We thus uncover the molecular mechanism
    by which AGC kinases and MAB4/MEL proteins regulate PIN localization and plant
    development.
acknowledged_ssus:
- _id: Bio
acknowledgement: We acknowledge Ben Scheres, Christian Luschnig, and Claus Schwechheimer
  for sharing published material. We thank Monika Hrtyan and Dorota Jaworska at IST
  Austria and Gerda Lamers and Ward de Winter at IBL Netherlands for technical assistance;
  Corinna Hartinger, Jakub Hajný, Lesia Rodriguez, Mingyue Li, and Lindy Abas for
  experimental support; and the Bioimaging Facility at IST Austria and the Bioimaging
  Core at VIB for imaging support. We are grateful to Christian Luschnig, Lindy Abas,
  and Roman Pleskot for valuable discussions. We also acknowledge the EMBO for supporting
  M.G. with a long-term fellowship ( ALTF 1005-2019 ) during the finalization and
  revision of this manuscript in the laboratory of B.D.R., and we thank R. Pierik
  for allowing K.V.G. to work on this manuscript during a postdoc in his laboratory
  at Utrecht University. This work was supported by grants from the European Research
  Council under the European Union’s Seventh Framework Programme (ERC grant agreements
  742985 to J.F., 714055 to B.D.R., and 803048 to M.F.), the Austrian Science Fund
  (FWF; I 3630-B25 to J.F.), Chemical Sciences (partly) financed by the Dutch Research
  Council (NWO-CW TOP 700.58.301 to R.O.), the Dutch Research Council (NWO-VICI 865.17.002
  to R. Pierik), Grants-in-Aid from the Ministry of Education, Culture, Sports, Science
  and Technology, Japan (KAKENHI grant 17K17595 to S.N.), the Ministry of Education,
  Youth and Sports of the Czech Republic (MŠMT project NPUI-LO1417 ), and a China
  Scholarship Council (to X.W.).
article_processing_charge: No
article_type: original
author:
- first_name: Matous
  full_name: Glanc, Matous
  id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
  last_name: Glanc
  orcid: 0000-0003-0619-7783
- first_name: K
  full_name: Van Gelderen, K
  last_name: Van Gelderen
- first_name: Lukas
  full_name: Hörmayer, Lukas
  id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Hörmayer
  orcid: 0000-0001-8295-2926
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: S
  full_name: Naramoto, S
  last_name: Naramoto
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: David
  full_name: Domjan, David
  id: C684CD7A-257E-11EA-9B6F-D8588B4F947F
  last_name: Domjan
  orcid: 0000-0003-2267-106X
- first_name: L
  full_name: Vcelarova, L
  last_name: Vcelarova
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: E
  full_name: de Koning, E
  last_name: de Koning
- first_name: M
  full_name: van Dop, M
  last_name: van Dop
- first_name: E
  full_name: Rademacher, E
  last_name: Rademacher
- first_name: S
  full_name: Janson, S
  last_name: Janson
- first_name: X
  full_name: Wei, X
  last_name: Wei
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Matyas
  full_name: Fendrych, Matyas
  id: 43905548-F248-11E8-B48F-1D18A9856A87
  last_name: Fendrych
  orcid: 0000-0002-9767-8699
- first_name: B
  full_name: De Rybel, B
  last_name: De Rybel
- first_name: R
  full_name: Offringa, R
  last_name: Offringa
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Glanc M, Van Gelderen K, Hörmayer L, et al. AGC kinases and MAB4/MEL proteins
    maintain PIN polarity by limiting lateral diffusion in plant cells. <i>Current
    Biology</i>. 2021;31(9):1918-1930. doi:<a href="https://doi.org/10.1016/j.cub.2021.02.028">10.1016/j.cub.2021.02.028</a>
  apa: Glanc, M., Van Gelderen, K., Hörmayer, L., Tan, S., Naramoto, S., Zhang, X.,
    … Friml, J. (2021). AGC kinases and MAB4/MEL proteins maintain PIN polarity by
    limiting lateral diffusion in plant cells. <i>Current Biology</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.cub.2021.02.028">https://doi.org/10.1016/j.cub.2021.02.028</a>
  chicago: Glanc, Matous, K Van Gelderen, Lukas Hörmayer, Shutang Tan, S Naramoto,
    Xixi Zhang, David Domjan, et al. “AGC Kinases and MAB4/MEL Proteins Maintain PIN
    Polarity by Limiting Lateral Diffusion in Plant Cells.” <i>Current Biology</i>.
    Elsevier, 2021. <a href="https://doi.org/10.1016/j.cub.2021.02.028">https://doi.org/10.1016/j.cub.2021.02.028</a>.
  ieee: M. Glanc <i>et al.</i>, “AGC kinases and MAB4/MEL proteins maintain PIN polarity
    by limiting lateral diffusion in plant cells,” <i>Current Biology</i>, vol. 31,
    no. 9. Elsevier, pp. 1918–1930, 2021.
  ista: Glanc M, Van Gelderen K, Hörmayer L, Tan S, Naramoto S, Zhang X, Domjan D,
    Vcelarova L, Hauschild R, Johnson AJ, de Koning E, van Dop M, Rademacher E, Janson
    S, Wei X, Molnar G, Fendrych M, De Rybel B, Offringa R, Friml J. 2021. AGC kinases
    and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant
    cells. Current Biology. 31(9), 1918–1930.
  mla: Glanc, Matous, et al. “AGC Kinases and MAB4/MEL Proteins Maintain PIN Polarity
    by Limiting Lateral Diffusion in Plant Cells.” <i>Current Biology</i>, vol. 31,
    no. 9, Elsevier, 2021, pp. 1918–30, doi:<a href="https://doi.org/10.1016/j.cub.2021.02.028">10.1016/j.cub.2021.02.028</a>.
  short: M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D.
    Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E.
    Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa,
    J. Friml, Current Biology 31 (2021) 1918–1930.
corr_author: '1'
date_created: 2021-03-26T12:09:33Z
date_published: 2021-03-10T00:00:00Z
date_updated: 2025-04-14T07:45:00Z
day: '10'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.cub.2021.02.028
ec_funded: 1
external_id:
  isi:
  - '000653077800004'
  pmid:
  - '33705718'
file:
- access_level: open_access
  checksum: b1723040ecfd8c81194185472eb62546
  content_type: application/pdf
  creator: dernst
  date_created: 2021-04-01T10:53:42Z
  date_updated: 2021-04-01T10:53:42Z
  file_id: '9303'
  file_name: 2021_CurrentBiology_Glanc.pdf
  file_size: 4324371
  relation: main_file
  success: 1
file_date_updated: 2021-04-01T10:53:42Z
has_accepted_license: '1'
intvolume: '        31'
isi: 1
issue: '9'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1918-1930
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral
  diffusion in plant cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 31
year: '2021'
...
---
_id: '9392'
abstract:
- lang: eng
  text: 'Humans conceptualize the diversity of life by classifying individuals into
    types we call ‘species’1. The species we recognize influence political and financial
    decisions and guide our understanding of how units of diversity evolve and interact.
    Although the idea of species may seem intuitive, a debate about the best way to
    define them has raged even before Darwin2. So much energy has been devoted to
    the so-called ‘species problem’ that no amount of discourse will ever likely solve
    it2,3. Dozens of species concepts are currently recognized3, but we lack a concrete
    understanding of how much researchers actually disagree and the factors that cause
    them to think differently1,2. To address this, we used a survey to quantify the
    species problem for the first time. The results indicate that the disagreement
    is extensive: two randomly chosen respondents will most likely disagree on the
    nature of species. The probability of disagreement is not predicted by researcher
    experience or broad study system, but tended to be lower among researchers with
    similar focus, training and who study the same organism. Should we see this diversity
    of perspectives as a problem? We argue that we should not.'
acknowledgement: We thank Christopher Cooney, Martin Garlovsky, Anja M. Westram, Carina
  Baskett, Stefanie Belohlavy, Michal Hledik, Arka Pal, Nicholas H. Barton, Roger
  K. Butlin and members of the University of Sheffield Speciation Journal Club for
  feedback on draft survey questions and/or comments on a draft manuscript. Three
  anonymous reviewers gave thoughtful feedback that improved the manuscript. We thank
  Ahmad Nadeem, who was paid to build the Shiny app. We are especially grateful to
  everyone who took part in the survey. Ethical approval for the survey was obtained
  through the University of Sheffield Ethics Review Procedure (Application 029768).
  S.S. was supported by a NERC grant awarded to Roger K. Butlin.
article_processing_charge: No
article_type: original
author:
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Mark
  full_name: Ravinet, Mark
  last_name: Ravinet
citation:
  ama: Stankowski S, Ravinet M. Quantifying the use of species concepts. <i>Current
    Biology</i>. 2021;31(9):R428-R429. doi:<a href="https://doi.org/10.1016/j.cub.2021.03.060">10.1016/j.cub.2021.03.060</a>
  apa: Stankowski, S., &#38; Ravinet, M. (2021). Quantifying the use of species concepts.
    <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2021.03.060">https://doi.org/10.1016/j.cub.2021.03.060</a>
  chicago: Stankowski, Sean, and Mark Ravinet. “Quantifying the Use of Species Concepts.”
    <i>Current Biology</i>. Cell Press, 2021. <a href="https://doi.org/10.1016/j.cub.2021.03.060">https://doi.org/10.1016/j.cub.2021.03.060</a>.
  ieee: S. Stankowski and M. Ravinet, “Quantifying the use of species concepts,” <i>Current
    Biology</i>, vol. 31, no. 9. Cell Press, pp. R428–R429, 2021.
  ista: Stankowski S, Ravinet M. 2021. Quantifying the use of species concepts. Current
    Biology. 31(9), R428–R429.
  mla: Stankowski, Sean, and Mark Ravinet. “Quantifying the Use of Species Concepts.”
    <i>Current Biology</i>, vol. 31, no. 9, Cell Press, 2021, pp. R428–29, doi:<a
    href="https://doi.org/10.1016/j.cub.2021.03.060">10.1016/j.cub.2021.03.060</a>.
  short: S. Stankowski, M. Ravinet, Current Biology 31 (2021) R428–R429.
corr_author: '1'
date_created: 2021-05-16T22:01:46Z
date_published: 2021-05-10T00:00:00Z
date_updated: 2026-06-18T19:49:12Z
day: '10'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1016/j.cub.2021.03.060
external_id:
  isi:
  - '000654741200004'
  pmid:
  - '33974865'
intvolume: '        31'
isi: 1
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cub.2021.03.060
month: '05'
oa: 1
oa_version: Published Version
page: R428-R429
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Cell Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantifying the use of species concepts
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2021'
...
---
_id: '12190'
abstract:
- lang: eng
  text: Meiotic crossover frequency varies within genomes, which influences genetic
    diversity and adaptation. In turn, genetic variation within populations can act
    to modify crossover frequency in cis and trans. To identify genetic variation
    that controls meiotic crossover frequency, we screened Arabidopsis accessions
    using fluorescent recombination reporters. We mapped a genetic modifier of crossover
    frequency in Col × Bur populations of Arabidopsis to a premature stop codon within
    TBP-ASSOCIATED FACTOR 4b (TAF4b), which encodes a subunit of the RNA polymerase
    II general transcription factor TFIID. The Arabidopsis taf4b mutation is a rare
    variant found in the British Isles, originating in South-West Ireland. Using genetics,
    genomics, and immunocytology, we demonstrate a genome-wide decrease in taf4b crossovers,
    with strongest reduction in the sub-telomeric regions. Using RNA sequencing (RNA-seq)
    from purified meiocytes, we show that TAF4b expression is meiocyte enriched, whereas
    its paralog TAF4 is broadly expressed. Consistent with the role of TFIID in promoting
    gene expression, RNA-seq of wild-type and taf4b meiocytes identified widespread
    transcriptional changes, including in genes that regulate the meiotic cell cycle
    and recombination. Therefore, TAF4b duplication is associated with acquisition
    of meiocyte-specific expression and promotion of germline transcription, which
    act directly or indirectly to elevate crossovers. This identifies a novel mode
    of meiotic recombination control via a general transcription factor.
acknowledgement: "We thank Gregory Copenhaver (University of North Carolina), Avraham
  Levy (The Weizmann Institute), and Scott Poethig (University of Pennsylvania) for
  FTLs; Piotr Ziolkowski for Col-420/Bur seed; Sureshkumar Balasubramanian\r\n(Monash
  University) for providing British and Irish Arabidopsis accessions; Mathilde Grelon
  (INRA, Versailles) for providing the MLH1 antibody; and the Gurdon Institute for
  access to microscopes. This work was supported by a BBSRC DTP studentship (E.J.L.),
  European Research Area Network for Coordinating Action in Plant Sciences/BBSRC ‘‘DeCOP’’
  (BB/M004937/1; C.L.), a BBSRC David Phillips Fellowship (BB/L025043/1; H.G. and
  X.F.), the European Research Council (CoG ‘‘SynthHotspot,’’ A.J.T., C.L., and I.R.H.;
  StG ‘‘SexMeth,’’ X.F.), and a Sainsbury Charitable Foundation Studentship (A.R.B.)."
article_processing_charge: No
article_type: original
author:
- first_name: Emma J.
  full_name: Lawrence, Emma J.
  last_name: Lawrence
- first_name: Hongbo
  full_name: Gao, Hongbo
  last_name: Gao
- first_name: Andrew J.
  full_name: Tock, Andrew J.
  last_name: Tock
- first_name: Christophe
  full_name: Lambing, Christophe
  last_name: Lambing
- first_name: Alexander R.
  full_name: Blackwell, Alexander R.
  last_name: Blackwell
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
- first_name: Ian R.
  full_name: Henderson, Ian R.
  last_name: Henderson
citation:
  ama: Lawrence EJ, Gao H, Tock AJ, et al. Natural variation in TBP-ASSOCIATED FACTOR
    4b controls meiotic crossover and germline transcription in Arabidopsis. <i>Current
    Biology</i>. 2019;29(16):2676-2686.e3. doi:<a href="https://doi.org/10.1016/j.cub.2019.06.084">10.1016/j.cub.2019.06.084</a>
  apa: Lawrence, E. J., Gao, H., Tock, A. J., Lambing, C., Blackwell, A. R., Feng,
    X., &#38; Henderson, I. R. (2019). Natural variation in TBP-ASSOCIATED FACTOR
    4b controls meiotic crossover and germline transcription in Arabidopsis. <i>Current
    Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2019.06.084">https://doi.org/10.1016/j.cub.2019.06.084</a>
  chicago: Lawrence, Emma J., Hongbo Gao, Andrew J. Tock, Christophe Lambing, Alexander
    R. Blackwell, Xiaoqi Feng, and Ian R. Henderson. “Natural Variation in TBP-ASSOCIATED
    FACTOR 4b Controls Meiotic Crossover and Germline Transcription in Arabidopsis.”
    <i>Current Biology</i>. Elsevier, 2019. <a href="https://doi.org/10.1016/j.cub.2019.06.084">https://doi.org/10.1016/j.cub.2019.06.084</a>.
  ieee: E. J. Lawrence <i>et al.</i>, “Natural variation in TBP-ASSOCIATED FACTOR
    4b controls meiotic crossover and germline transcription in Arabidopsis,” <i>Current
    Biology</i>, vol. 29, no. 16. Elsevier, p. 2676–2686.e3, 2019.
  ista: Lawrence EJ, Gao H, Tock AJ, Lambing C, Blackwell AR, Feng X, Henderson IR.
    2019. Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover
    and germline transcription in Arabidopsis. Current Biology. 29(16), 2676–2686.e3.
  mla: Lawrence, Emma J., et al. “Natural Variation in TBP-ASSOCIATED FACTOR 4b Controls
    Meiotic Crossover and Germline Transcription in Arabidopsis.” <i>Current Biology</i>,
    vol. 29, no. 16, Elsevier, 2019, p. 2676–2686.e3, doi:<a href="https://doi.org/10.1016/j.cub.2019.06.084">10.1016/j.cub.2019.06.084</a>.
  short: E.J. Lawrence, H. Gao, A.J. Tock, C. Lambing, A.R. Blackwell, X. Feng, I.R.
    Henderson, Current Biology 29 (2019) 2676–2686.e3.
date_created: 2023-01-16T09:16:33Z
date_published: 2019-08-19T00:00:00Z
date_updated: 2025-01-14T14:31:02Z
day: '19'
department:
- _id: XiFe
doi: 10.1016/j.cub.2019.06.084
extern: '1'
external_id:
  pmid:
  - '31378616'
intvolume: '        29'
issue: '16'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
month: '08'
oa_version: None
page: 2676-2686.e3
pmid: 1
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and
  germline transcription in Arabidopsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2019'
...
---
_id: '6979'
article_processing_charge: No
article_type: original
author:
- first_name: Aglaja
  full_name: Kopf, Aglaja
  id: 31DAC7B6-F248-11E8-B48F-1D18A9856A87
  last_name: Kopf
  orcid: 0000-0002-2187-6656
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: 'Kopf A, Sixt MK. Gut homeostasis: Active migration of intestinal epithelial
    cells in tissue renewal. <i>Current Biology</i>. 2019;29(20):R1091-R1093. doi:<a
    href="https://doi.org/10.1016/j.cub.2019.08.068">10.1016/j.cub.2019.08.068</a>'
  apa: 'Kopf, A., &#38; Sixt, M. K. (2019). Gut homeostasis: Active migration of intestinal
    epithelial cells in tissue renewal. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2019.08.068">https://doi.org/10.1016/j.cub.2019.08.068</a>'
  chicago: 'Kopf, Aglaja, and Michael K Sixt. “Gut Homeostasis: Active Migration of
    Intestinal Epithelial Cells in Tissue Renewal.” <i>Current Biology</i>. Cell Press,
    2019. <a href="https://doi.org/10.1016/j.cub.2019.08.068">https://doi.org/10.1016/j.cub.2019.08.068</a>.'
  ieee: 'A. Kopf and M. K. Sixt, “Gut homeostasis: Active migration of intestinal
    epithelial cells in tissue renewal,” <i>Current Biology</i>, vol. 29, no. 20.
    Cell Press, pp. R1091–R1093, 2019.'
  ista: 'Kopf A, Sixt MK. 2019. Gut homeostasis: Active migration of intestinal epithelial
    cells in tissue renewal. Current Biology. 29(20), R1091–R1093.'
  mla: 'Kopf, Aglaja, and Michael K. Sixt. “Gut Homeostasis: Active Migration of Intestinal
    Epithelial Cells in Tissue Renewal.” <i>Current Biology</i>, vol. 29, no. 20,
    Cell Press, 2019, pp. R1091–93, doi:<a href="https://doi.org/10.1016/j.cub.2019.08.068">10.1016/j.cub.2019.08.068</a>.'
  short: A. Kopf, M.K. Sixt, Current Biology 29 (2019) R1091–R1093.
date_created: 2019-11-04T15:18:29Z
date_published: 2019-10-21T00:00:00Z
date_updated: 2023-09-05T12:43:43Z
day: '21'
department:
- _id: MiSi
doi: 10.1016/j.cub.2019.08.068
external_id:
  isi:
  - '000491286200016'
  pmid:
  - '31639357'
intvolume: '        29'
isi: 1
issue: '20'
language:
- iso: eng
month: '10'
oa_version: None
page: R1091-R1093
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Cell Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Gut homeostasis: Active migration of intestinal epithelial cells in tissue
  renewal'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 29
year: '2019'
...
---
OA_place: publisher
OA_type: free access
_id: '526'
abstract:
- lang: eng
  text: Plants form new organs with patterned tissue organization throughout their
    lifespan. It is unknown whether this robust post-embryonic organ formation results
    from stereotypic dynamic processes, in which the arrangement of cells follows
    rigid rules. Here, we combine modeling with empirical observations of whole-organ
    development to identify the principles governing lateral root formation in Arabidopsis.
    Lateral roots derive from a small pool of founder cells in which some take a dominant
    role as seen by lineage tracing. The first division of the founders is asymmetric,
    tightly regulated, and determines the formation of a layered structure. Whereas
    the pattern of subsequent cell divisions is not stereotypic between different
    samples, it is characterized by a regular switch in division plane orientation.
    This switch is also necessary for the appearance of patterned layers as a result
    of the apical growth of the primordium. Our data suggest that lateral root morphogenesis
    is based on a limited set of rules. They determine cell growth and division orientation.
    The organ-level coupling of the cell behavior ensures the emergence of the lateral
    root's characteristic features. We propose that self-organizing, non-deterministic
    modes of development account for the robustness of plant organ morphogenesis.
acknowledgement: "We thank M.J. Bennett, L. Laplaze, and S. Lemke for their helpful
  comments.\r\nThis work was supported by the Land Baden-Württemberg, the Chica und
  Heinz Schaller Stiftung, the CellNetworks cluster of excellence, and the Boehringer
  Ingelheim Fond (to J.F. and A.M.) and the Cluster of Excellence “Macromolecular
  Complexes” at the Goethe University Frankfurt am Main (CEF-MC II; DFG Project EXC
  115; to D.v.W., A.S., and E.H.K.S.).\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
  full_name: Von Wangenheim, Daniel
  id: 49E91952-F248-11E8-B48F-1D18A9856A87
  last_name: Von Wangenheim
  orcid: 0000-0002-6862-1247
- first_name: Jens
  full_name: Fangerau, Jens
  last_name: Fangerau
- first_name: Alexander
  full_name: Schmitz, Alexander
  last_name: Schmitz
- first_name: Richard
  full_name: Smith, Richard
  last_name: Smith
- first_name: Heike
  full_name: Leitte, Heike
  last_name: Leitte
- first_name: Ernst
  full_name: Stelzer, Ernst
  last_name: Stelzer
- first_name: Alexis
  full_name: Maizel, Alexis
  last_name: Maizel
citation:
  ama: von Wangenheim D, Fangerau J, Schmitz A, et al. Rules and self-organizing properties
    of post-embryonic plant organ cell division patterns. <i>Current Biology</i>.
    2016;26(4):439-449. doi:<a href="https://doi.org/10.1016/j.cub.2015.12.047">10.1016/j.cub.2015.12.047</a>
  apa: von Wangenheim, D., Fangerau, J., Schmitz, A., Smith, R., Leitte, H., Stelzer,
    E., &#38; Maizel, A. (2016). Rules and self-organizing properties of post-embryonic
    plant organ cell division patterns. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2015.12.047">https://doi.org/10.1016/j.cub.2015.12.047</a>
  chicago: Wangenheim, Daniel von, Jens Fangerau, Alexander Schmitz, Richard Smith,
    Heike Leitte, Ernst Stelzer, and Alexis Maizel. “Rules and Self-Organizing Properties
    of Post-Embryonic Plant Organ Cell Division Patterns.” <i>Current Biology</i>.
    Cell Press, 2016. <a href="https://doi.org/10.1016/j.cub.2015.12.047">https://doi.org/10.1016/j.cub.2015.12.047</a>.
  ieee: D. von Wangenheim <i>et al.</i>, “Rules and self-organizing properties of
    post-embryonic plant organ cell division patterns,” <i>Current Biology</i>, vol.
    26, no. 4. Cell Press, pp. 439–449, 2016.
  ista: von Wangenheim D, Fangerau J, Schmitz A, Smith R, Leitte H, Stelzer E, Maizel
    A. 2016. Rules and self-organizing properties of post-embryonic plant organ cell
    division patterns. Current Biology. 26(4), 439–449.
  mla: von Wangenheim, Daniel, et al. “Rules and Self-Organizing Properties of Post-Embryonic
    Plant Organ Cell Division Patterns.” <i>Current Biology</i>, vol. 26, no. 4, Cell
    Press, 2016, pp. 439–49, doi:<a href="https://doi.org/10.1016/j.cub.2015.12.047">10.1016/j.cub.2015.12.047</a>.
  short: D. von Wangenheim, J. Fangerau, A. Schmitz, R. Smith, H. Leitte, E. Stelzer,
    A. Maizel, Current Biology 26 (2016) 439–449.
date_created: 2018-12-11T11:46:58Z
date_published: 2016-02-22T00:00:00Z
date_updated: 2026-06-02T09:03:03Z
day: '22'
doi: 10.1016/j.cub.2015.12.047
extern: '1'
external_id:
  pmid:
  - '26832441'
intvolume: '        26'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cub.2015.12.047
month: '02'
oa: 1
oa_version: Published Version
page: 439 - 449
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Cell Press
publist_id: '7293'
quality_controlled: '1'
status: public
title: Rules and self-organizing properties of post-embryonic plant organ cell division
  patterns
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2016'
...
---
_id: '11074'
article_processing_charge: No
article_type: original
author:
- first_name: Emily M.
  full_name: Hatch, Emily M.
  last_name: Hatch
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Hatch EM, Hetzer M. Chromothripsis. <i>Current Biology</i>. 2015;25(10):PR397-R399.
    doi:<a href="https://doi.org/10.1016/j.cub.2015.02.033">10.1016/j.cub.2015.02.033</a>
  apa: Hatch, E. M., &#38; Hetzer, M. (2015). Chromothripsis. <i>Current Biology</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.cub.2015.02.033">https://doi.org/10.1016/j.cub.2015.02.033</a>
  chicago: Hatch, Emily M., and Martin Hetzer. “Chromothripsis.” <i>Current Biology</i>.
    Elsevier, 2015. <a href="https://doi.org/10.1016/j.cub.2015.02.033">https://doi.org/10.1016/j.cub.2015.02.033</a>.
  ieee: E. M. Hatch and M. Hetzer, “Chromothripsis,” <i>Current Biology</i>, vol.
    25, no. 10. Elsevier, pp. PR397-R399, 2015.
  ista: Hatch EM, Hetzer M. 2015. Chromothripsis. Current Biology. 25(10), PR397-R399.
  mla: Hatch, Emily M., and Martin Hetzer. “Chromothripsis.” <i>Current Biology</i>,
    vol. 25, no. 10, Elsevier, 2015, pp. PR397-R399, doi:<a href="https://doi.org/10.1016/j.cub.2015.02.033">10.1016/j.cub.2015.02.033</a>.
  short: E.M. Hatch, M. Hetzer, Current Biology 25 (2015) PR397-R399.
date_created: 2022-04-07T07:49:00Z
date_published: 2015-05-18T00:00:00Z
date_updated: 2024-10-14T11:22:15Z
day: '18'
doi: 10.1016/j.cub.2015.02.033
extern: '1'
external_id:
  pmid:
  - '25989073'
intvolume: '        25'
issue: '10'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cub.2015.02.033
month: '05'
oa: 1
oa_version: Published Version
page: PR397-R399
pmid: 1
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Chromothripsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2015'
...
---
_id: '9489'
abstract:
- lang: eng
  text: Cytosine methylation is an ancient process with conserved enzymology but diverse
    biological functions that include defense against transposable elements and regulation
    of gene expression. Here we will discuss the evolution and biological significance
    of eukaryotic DNA methylation, the likely drivers of that evolution, and major
    remaining mysteries.
article_processing_charge: No
article_type: review
author:
- first_name: Assaf
  full_name: Zemach, Assaf
  last_name: Zemach
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Zemach A, Zilberman D. Evolution of eukaryotic DNA methylation and the pursuit
    of safer sex. <i>Current Biology</i>. 2010;20(17):R780-R785. doi:<a href="https://doi.org/10.1016/j.cub.2010.07.007">10.1016/j.cub.2010.07.007</a>
  apa: Zemach, A., &#38; Zilberman, D. (2010). Evolution of eukaryotic DNA methylation
    and the pursuit of safer sex. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2010.07.007">https://doi.org/10.1016/j.cub.2010.07.007</a>
  chicago: Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation
    and the Pursuit of Safer Sex.” <i>Current Biology</i>. Elsevier, 2010. <a href="https://doi.org/10.1016/j.cub.2010.07.007">https://doi.org/10.1016/j.cub.2010.07.007</a>.
  ieee: A. Zemach and D. Zilberman, “Evolution of eukaryotic DNA methylation and the
    pursuit of safer sex,” <i>Current Biology</i>, vol. 20, no. 17. Elsevier, pp.
    R780–R785, 2010.
  ista: Zemach A, Zilberman D. 2010. Evolution of eukaryotic DNA methylation and the
    pursuit of safer sex. Current Biology. 20(17), R780–R785.
  mla: Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation
    and the Pursuit of Safer Sex.” <i>Current Biology</i>, vol. 20, no. 17, Elsevier,
    2010, pp. R780–85, doi:<a href="https://doi.org/10.1016/j.cub.2010.07.007">10.1016/j.cub.2010.07.007</a>.
  short: A. Zemach, D. Zilberman, Current Biology 20 (2010) R780–R785.
date_created: 2021-06-07T09:45:27Z
date_published: 2010-09-14T00:00:00Z
date_updated: 2021-12-14T08:52:34Z
day: '14'
department:
- _id: DaZi
doi: 10.1016/j.cub.2010.07.007
extern: '1'
external_id:
  pmid:
  - '20833323'
intvolume: '        20'
issue: '17'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cub.2010.07.007
month: '09'
oa: 1
oa_version: Published Version
page: R780-R785
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evolution of eukaryotic DNA methylation and the pursuit of safer sex
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2010'
...
---
_id: '7752'
article_processing_charge: No
article_type: original
author:
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: Jill G.
  full_name: Pilkington, Jill G.
  last_name: Pilkington
- first_name: Tim H.
  full_name: Clutton-Brock, Tim H.
  last_name: Clutton-Brock
- first_name: Josephine M.
  full_name: Pemberton, Josephine M.
  last_name: Pemberton
- first_name: Loeske. E.B.
  full_name: Kruuk, Loeske. E.B.
  last_name: Kruuk
citation:
  ama: Robinson MR, Pilkington JG, Clutton-Brock TH, Pemberton JM, Kruuk LEB. Environmental
    heterogeneity generates fluctuating selection on a secondary sexual trait. <i>Current
    Biology</i>. 2008;18(10):751-757. doi:<a href="https://doi.org/10.1016/j.cub.2008.04.059">10.1016/j.cub.2008.04.059</a>
  apa: Robinson, M. R., Pilkington, J. G., Clutton-Brock, T. H., Pemberton, J. M.,
    &#38; Kruuk, L. E. B. (2008). Environmental heterogeneity generates fluctuating
    selection on a secondary sexual trait. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2008.04.059">https://doi.org/10.1016/j.cub.2008.04.059</a>
  chicago: Robinson, Matthew Richard, Jill G. Pilkington, Tim H. Clutton-Brock, Josephine
    M. Pemberton, and Loeske. E.B. Kruuk. “Environmental Heterogeneity Generates Fluctuating
    Selection on a Secondary Sexual Trait.” <i>Current Biology</i>. Elsevier, 2008.
    <a href="https://doi.org/10.1016/j.cub.2008.04.059">https://doi.org/10.1016/j.cub.2008.04.059</a>.
  ieee: M. R. Robinson, J. G. Pilkington, T. H. Clutton-Brock, J. M. Pemberton, and
    L. E. B. Kruuk, “Environmental heterogeneity generates fluctuating selection on
    a secondary sexual trait,” <i>Current Biology</i>, vol. 18, no. 10. Elsevier,
    pp. 751–757, 2008.
  ista: Robinson MR, Pilkington JG, Clutton-Brock TH, Pemberton JM, Kruuk LEB. 2008.
    Environmental heterogeneity generates fluctuating selection on a secondary sexual
    trait. Current Biology. 18(10), 751–757.
  mla: Robinson, Matthew Richard, et al. “Environmental Heterogeneity Generates Fluctuating
    Selection on a Secondary Sexual Trait.” <i>Current Biology</i>, vol. 18, no. 10,
    Elsevier, 2008, pp. 751–57, doi:<a href="https://doi.org/10.1016/j.cub.2008.04.059">10.1016/j.cub.2008.04.059</a>.
  short: M.R. Robinson, J.G. Pilkington, T.H. Clutton-Brock, J.M. Pemberton, L.E.B.
    Kruuk, Current Biology 18 (2008) 751–757.
date_created: 2020-04-30T11:02:13Z
date_published: 2008-05-20T00:00:00Z
date_updated: 2021-01-12T08:15:17Z
day: '20'
doi: 10.1016/j.cub.2008.04.059
extern: '1'
intvolume: '        18'
issue: '10'
language:
- iso: eng
month: '05'
oa_version: None
page: 751-757
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Environmental heterogeneity generates fluctuating selection on a secondary
  sexual trait
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2008'
...
---
_id: '6149'
article_processing_charge: No
author:
- first_name: Birgitta
  full_name: Olofsson, Birgitta
  last_name: Olofsson
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: 'Olofsson B, de Bono M. Sleep: dozy worms and sleepy flies. <i>Current Biology</i>.
    2008;18(5):R204-R206. doi:<a href="https://doi.org/10.1016/j.cub.2008.01.002">10.1016/j.cub.2008.01.002</a>'
  apa: 'Olofsson, B., &#38; de Bono, M. (2008). Sleep: dozy worms and sleepy flies.
    <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2008.01.002">https://doi.org/10.1016/j.cub.2008.01.002</a>'
  chicago: 'Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.”
    <i>Current Biology</i>. Elsevier, 2008. <a href="https://doi.org/10.1016/j.cub.2008.01.002">https://doi.org/10.1016/j.cub.2008.01.002</a>.'
  ieee: 'B. Olofsson and M. de Bono, “Sleep: dozy worms and sleepy flies,” <i>Current
    Biology</i>, vol. 18, no. 5. Elsevier, pp. R204–R206, 2008.'
  ista: 'Olofsson B, de Bono M. 2008. Sleep: dozy worms and sleepy flies. Current
    Biology. 18(5), R204–R206.'
  mla: 'Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.”
    <i>Current Biology</i>, vol. 18, no. 5, Elsevier, 2008, pp. R204–06, doi:<a href="https://doi.org/10.1016/j.cub.2008.01.002">10.1016/j.cub.2008.01.002</a>.'
  short: B. Olofsson, M. de Bono, Current Biology 18 (2008) R204–R206.
date_created: 2019-03-21T08:23:24Z
date_published: 2008-03-11T00:00:00Z
date_updated: 2022-08-25T15:03:41Z
day: '11'
doi: 10.1016/j.cub.2008.01.002
extern: '1'
external_id:
  pmid:
  - '18334193'
intvolume: '        18'
issue: '5'
language:
- iso: eng
month: '03'
oa_version: None
page: R204-R206
pmid: 1
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Sleep: dozy worms and sleepy flies'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2008'
...
---
_id: '6150'
author:
- first_name: Tina L.
  full_name: Gumienny, Tina L.
  last_name: Gumienny
- first_name: Lesley T.
  full_name: MacNeil, Lesley T.
  last_name: MacNeil
- first_name: Huang
  full_name: Wang, Huang
  last_name: Wang
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: Jeffrey L.
  full_name: Wrana, Jeffrey L.
  last_name: Wrana
- first_name: Richard W.
  full_name: Padgett, Richard W.
  last_name: Padgett
citation:
  ama: Gumienny TL, MacNeil LT, Wang H, de Bono M, Wrana JL, Padgett RW. Glypican
    LON-2 is a conserved negative regulator of BMP-like signaling in Caenorhabditis
    elegans. <i>Current Biology</i>. 2007;17(2):159-164. doi:<a href="https://doi.org/10.1016/j.cub.2006.11.065">10.1016/j.cub.2006.11.065</a>
  apa: Gumienny, T. L., MacNeil, L. T., Wang, H., de Bono, M., Wrana, J. L., &#38;
    Padgett, R. W. (2007). Glypican LON-2 is a conserved negative regulator of BMP-like
    signaling in Caenorhabditis elegans. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2006.11.065">https://doi.org/10.1016/j.cub.2006.11.065</a>
  chicago: Gumienny, Tina L., Lesley T. MacNeil, Huang Wang, Mario de Bono, Jeffrey
    L. Wrana, and Richard W. Padgett. “Glypican LON-2 Is a Conserved Negative Regulator
    of BMP-like Signaling in Caenorhabditis Elegans.” <i>Current Biology</i>. Elsevier,
    2007. <a href="https://doi.org/10.1016/j.cub.2006.11.065">https://doi.org/10.1016/j.cub.2006.11.065</a>.
  ieee: T. L. Gumienny, L. T. MacNeil, H. Wang, M. de Bono, J. L. Wrana, and R. W.
    Padgett, “Glypican LON-2 is a conserved negative regulator of BMP-like signaling
    in Caenorhabditis elegans,” <i>Current Biology</i>, vol. 17, no. 2. Elsevier,
    pp. 159–164, 2007.
  ista: Gumienny TL, MacNeil LT, Wang H, de Bono M, Wrana JL, Padgett RW. 2007. Glypican
    LON-2 is a conserved negative regulator of BMP-like signaling in Caenorhabditis
    elegans. Current Biology. 17(2), 159–164.
  mla: Gumienny, Tina L., et al. “Glypican LON-2 Is a Conserved Negative Regulator
    of BMP-like Signaling in Caenorhabditis Elegans.” <i>Current Biology</i>, vol.
    17, no. 2, Elsevier, 2007, pp. 159–64, doi:<a href="https://doi.org/10.1016/j.cub.2006.11.065">10.1016/j.cub.2006.11.065</a>.
  short: T.L. Gumienny, L.T. MacNeil, H. Wang, M. de Bono, J.L. Wrana, R.W. Padgett,
    Current Biology 17 (2007) 159–164.
date_created: 2019-03-21T08:44:44Z
date_published: 2007-01-23T00:00:00Z
date_updated: 2021-01-12T08:06:22Z
day: '23'
doi: 10.1016/j.cub.2006.11.065
extern: '1'
external_id:
  pmid:
  - '17240342'
intvolume: '        17'
issue: '2'
language:
- iso: eng
month: '01'
oa_version: None
page: 159-164
pmid: 1
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Glypican LON-2 is a conserved negative regulator of BMP-like signaling in Caenorhabditis
  elegans
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2007'
...
