@article{20725,
  abstract     = {The canonical mechanism by which the phytohormone auxin regulates transcription has been one of the cornerstones of plant signaling. The recent unexpected discovery of cyclic AMP (cAMP) as a second messenger in this pathway has revised its foundations while leaving many open questions and gaps in our understanding; these will be discussed in this forum article.},
  author       = {Friml, Jiří},
  issn         = {1878-4372},
  journal      = {Trends in Plant Science},
  pages        = {S1360--1385(25)00300--0},
  publisher    = {Elsevier},
  title        = {{Role of cAMP in TIR1/AFB auxin signaling: Open issues}},
  doi          = {10.1016/j.tplants.2025.10.018},
  year         = {2025},
}

@article{17377,
  abstract     = {Lateral root (LR) formation, that is vital for plant development, is one of many auxin-modulated processes, but the underlying regulatory mechanism is not yet fully known. Recently, 
González-García et al. discovered the BiAux compound and showed that it is involved in LR development via regulating specific auxin coreceptors.},
  author       = {Wójcikowska, Barbara and Friml, Jiří and Mazur, Ewa},
  issn         = {1360-1385},
  journal      = {Trends in Plant Science},
  number       = {12},
  pages        = {1279--1281},
  publisher    = {Elsevier},
  title        = {{BiAux, a newly discovered compound triggering auxin signaling}},
  doi          = {10.1016/j.tplants.2024.07.008},
  volume       = {29},
  year         = {2024},
}

@article{10411,
  abstract     = {The phytohormone auxin is the major growth regulator governing tropic responses including gravitropism. Auxin build-up at the lower side of stimulated shoots promotes cell expansion, whereas in roots it inhibits growth, leading to upward shoot bending and downward root bending, respectively. Yet it remains an enigma how the same signal can trigger such opposite cellular responses. In this review, we discuss several recent unexpected insights into the mechanisms underlying auxin regulation of growth, challenging several existing models. We focus on the divergent mechanisms of apoplastic pH regulation in shoots and roots revisiting the classical Acid Growth Theory and discuss coordinated involvement of multiple auxin signaling pathways. From this emerges a more comprehensive, updated picture how auxin regulates growth.},
  author       = {Li, Lanxin and Gallei, Michelle C and Friml, Jiří},
  issn         = {1360-1385},
  journal      = {Trends in Plant Science},
  number       = {5},
  pages        = {440--449},
  publisher    = {Cell Press},
  title        = {{Bending to auxin: Fast acid growth for tropisms}},
  doi          = {10.1016/j.tplants.2021.11.006},
  volume       = {27},
  year         = {2022},
}

@article{7219,
  abstract     = {Root system architecture (RSA), governed by the phytohormone auxin, endows plants with an adaptive advantage in particular environments. Using geographically representative arabidopsis (Arabidopsis thaliana) accessions as a resource for GWA mapping, Waidmann et al. and Ogura et al. recently identified two novel components involved in modulating auxin-mediated RSA and conferring plant fitness in particular habitats.},
  author       = {Xiao, Guanghui and Zhang, Yuzhou},
  issn         = {1360-1385},
  journal      = {Trends in Plant Science},
  number       = {2},
  pages        = {P121--123},
  publisher    = {Elsevier},
  title        = {{Adaptive growth: Shaping auxin-mediated root system architecture}},
  doi          = {10.1016/j.tplants.2019.12.001},
  volume       = {25},
  year         = {2020},
}

@article{7686,
  abstract     = {The agricultural green revolution spectacularly enhanced crop yield and lodging resistance with modified DELLA-mediated gibberellin signaling. However, this was achieved at the expense of reduced nitrogen-use efficiency (NUE). Recently, Wu et al. revealed novel gibberellin signaling that provides a blueprint for improving tillering and NUE in Green Revolution varieties (GRVs). },
  author       = {Xue, Huidan and Zhang, Yuzhou and Xiao, Guanghui},
  issn         = {1360-1385},
  journal      = {Trends in Plant Science},
  number       = {6},
  pages        = {520--522},
  publisher    = {Elsevier},
  title        = {{Neo-gibberellin signaling: Guiding the next generation of the green revolution}},
  doi          = {10.1016/j.tplants.2020.04.001},
  volume       = {25},
  year         = {2020},
}

@article{9519,
  abstract     = {Transposons are selfish genetic sequences that can increase their copy number and inflict substantial damage on their hosts. To combat these genomic parasites, plants have evolved multiple pathways to identify and silence transposons by methylating their DNA. Plants have also evolved mechanisms to limit the collateral damage from the antitransposon machinery. In this review, we examine recent developments that have elucidated many of the molecular workings of these pathways. We also highlight the evidence that the methylation and demethylation pathways interact, indicating that plants have a highly sophisticated, integrated system of transposon defense that has an important role in the regulation of gene expression.},
  author       = {Kim, M. Yvonne and Zilberman, Daniel},
  issn         = {1878-4372},
  journal      = {Trends in Plant Science},
  number       = {5},
  pages        = {320--326},
  publisher    = {Elsevier},
  title        = {{DNA methylation as a system of plant genomic immunity}},
  doi          = {10.1016/j.tplants.2014.01.014},
  volume       = {19},
  year         = {2014},
}