[{"ddc":["580"],"publication":"Trends in Plant Science","researchdata_availability":"no","abstract":[{"lang":"eng","text":"Auxin and calcium (Ca2+) are central plant signals that coordinate growth, development, and responses to environmental cues. Typically studied as largely parallel pathways, they are now increasingly recognized as interconnected networks whose activities converge at multiple regulatory levels. Recent advances in live imaging, biosensors, optogenetics, and structural approaches have revealed that auxin can rapidly trigger Ca2+ influx from the apoplast via TRANSPORT INHIBITOR RESPONSE1 (TIR1)/AUXIN-SIGNALING F-BOX (AFB)-dependent signaling mechanisms and Ca2+ channels, presumably involving cyclic nucleotides produced by TIR1/AFB auxin receptors. Conversely, Ca2+ signals arising from mechanosensing, wounding, and environmental stress can modulate auxin transport, signaling, and transcriptional outputs. Together, these discoveries highlight a dynamic, reciprocal signaling axis where Ca2+ acts both downstream and upstream of auxin to shape growth, development, tropisms, and regeneration."}],"supplementarymaterial":"no","scopus_import":"1","day":"04","article_type":"original","citation":{"ieee":"M. Zupunski, G. Grossmann, and J. Friml, “Decoding dialog: The auxin–calcium signaling crosstalk in plants,” <i>Trends in Plant Science</i>. Cell Press, 2026.","chicago":"Zupunski, Milan, Guido Grossmann, and Jiří Friml. “Decoding Dialog: The Auxin–Calcium Signaling Crosstalk in Plants.” <i>Trends in Plant Science</i>. Cell Press, 2026. <a href=\"https://doi.org/10.1016/j.tplants.2026.08.002\">https://doi.org/10.1016/j.tplants.2026.08.002</a>.","apa":"Zupunski, M., Grossmann, G., &#38; Friml, J. (2026). Decoding dialog: The auxin–calcium signaling crosstalk in plants. <i>Trends in Plant Science</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.tplants.2026.08.002\">https://doi.org/10.1016/j.tplants.2026.08.002</a>","short":"M. Zupunski, G. Grossmann, J. Friml, Trends in Plant Science (2026).","ista":"Zupunski M, Grossmann G, Friml J. 2026. Decoding dialog: The auxin–calcium signaling crosstalk in plants. Trends in Plant Science.","mla":"Zupunski, Milan, et al. “Decoding Dialog: The Auxin–Calcium Signaling Crosstalk in Plants.” <i>Trends in Plant Science</i>, Cell Press, 2026, doi:<a href=\"https://doi.org/10.1016/j.tplants.2026.08.002\">10.1016/j.tplants.2026.08.002</a>.","ama":"Zupunski M, Grossmann G, Friml J. Decoding dialog: The auxin–calcium signaling crosstalk in plants. <i>Trends in Plant Science</i>. 2026. doi:<a href=\"https://doi.org/10.1016/j.tplants.2026.08.002\">10.1016/j.tplants.2026.08.002</a>"},"keyword":["auxin","calcium","rapid signaling","crosstalk","growth regulation","cyclic nucleotides"],"publication_identifier":{"eissn":["1878-4372"],"issn":["1360-1385"]},"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"language":[{"iso":"eng"}],"acknowledgement":"The authors would like to acknowledge many colleagues whose valuable contributions to the field could not be included in this review due to space limitations and reference constraints.","publisher":"Cell Press","oa":1,"corr_author":"1","author":[{"first_name":"Milan","id":"f6a21fce-573e-11f0-a150-a8d96aee2539","last_name":"Zupunski","full_name":"Zupunski, Milan"},{"full_name":"Grossmann, Guido","last_name":"Grossmann","first_name":"Guido"},{"last_name":"Friml","full_name":"Friml, Jiří","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596"}],"_id":"22927","year":"2026","date_updated":"2026-09-17T07:42:27Z","title":"Decoding dialog: The auxin–calcium signaling crosstalk in plants","doi":"10.1016/j.tplants.2026.08.002","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","status":"public","article_processing_charge":"No","OA_place":"publisher","month":"09","OA_type":"hybrid","department":[{"_id":"JiFr"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.tplants.2026.08.002"}],"publication_status":"epub_ahead","date_created":"2026-09-13T22:01:56Z","external_id":{"pmid":["42692943"]},"type":"journal_article","date_published":"2026-09-04T00:00:00Z","pmid":1,"das_tickbox":"0","fulldoi":"https://doi.org/10.1016/j.tplants.2026.08.002"},{"author":[{"first_name":"Tilman","last_name":"Jacob","full_name":"Jacob, Tilman"},{"last_name":"Ai","full_name":"Ai, Haiyue","id":"71a6871f-c08f-11ee-886c-c975579c368c","first_name":"Haiyue"},{"first_name":"Marcel","full_name":"Quint, Marcel","last_name":"Quint"}],"publisher":"Springer","intvolume":"      3086","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","quality_controlled":"1","year":"2026","title":"EdU-Based Quantitative Analysis of Cell Proliferation in Arabidopsis Root Meristems","date_updated":"2026-10-12T09:13:28Z","doi":"10.1007/978-1-0716-5603-7_13","_id":"23086","place":"New York","external_id":{"pmid":["42814359"]},"date_created":"2026-10-11T22:02:03Z","publication_status":"published","month":"10","article_processing_charge":"No","OA_type":"closed access","department":[{"_id":"JiFr"}],"fulldoi":"https://doi.org/10.1007/978-1-0716-5603-7_13","pmid":1,"date_published":"2026-10-01T00:00:00Z","type":"book_chapter","page":"165-176","publication":"Root Development","scopus_import":"1","day":"01","abstract":[{"lang":"eng","text":"The division of a mother cell into two daughter cells is a fundamental process in biology, involving the transfer of genomic information to the next generation of cells. In plant roots, cell divisions occur in the root apical meristem, a specialized tissue located at the plant’s root tip. Cell proliferation rates in the root apical meristem shape root growth, thereby contributing to general development as well as the acclimatization to stressful environmental conditions through phenotypic plasticity. Here, we present a protocol for the microscopical analysis of cell proliferation in Arabidopsis thaliana root meristems by 5-ethynyl-2ʹ-deoxyuridine (EdU) staining. EdU, a thymine-analog, is incorporated into newly synthesized DNA of proliferative cells during the S-phase of the cell cycle. Subsequently, EdU-containing nuclei can be labeled with a fluorophore and detected by confocal laser scanning microscopy. The combination of the EdU assay with cell wall staining enables the quantification of root meristem architecture parameters and cell division activity from microscopic images. Together, this can elucidate how root meristems respond to changes in environmental conditions or address fundamental questions of developmental plant biology."}],"alternative_title":["Methods in Molecular Biology"],"volume":3086,"series_title":"MIMB","publication_identifier":{"eisbn":["9781071656037"],"eissn":["1940-6029"]},"citation":{"ama":"Jacob T, Ai H, Quint M. EdU-Based Quantitative Analysis of Cell Proliferation in Arabidopsis Root Meristems. In: <i>Root Development</i>. Vol 3086. MIMB. New York: Springer; 2026:165-176. doi:<a href=\"https://doi.org/10.1007/978-1-0716-5603-7_13\">10.1007/978-1-0716-5603-7_13</a>","ista":"Jacob T, Ai H, Quint M. 2026.EdU-Based Quantitative Analysis of Cell Proliferation in Arabidopsis Root Meristems. In: Root Development. Methods in Molecular Biology, vol. 3086, 165–176.","mla":"Jacob, Tilman, et al. “EdU-Based Quantitative Analysis of Cell Proliferation in Arabidopsis Root Meristems.” <i>Root Development</i>, vol. 3086, Springer, 2026, pp. 165–76, doi:<a href=\"https://doi.org/10.1007/978-1-0716-5603-7_13\">10.1007/978-1-0716-5603-7_13</a>.","apa":"Jacob, T., Ai, H., &#38; Quint, M. (2026). EdU-Based Quantitative Analysis of Cell Proliferation in Arabidopsis Root Meristems. In <i>Root Development</i> (Vol. 3086, pp. 165–176). New York: Springer. <a href=\"https://doi.org/10.1007/978-1-0716-5603-7_13\">https://doi.org/10.1007/978-1-0716-5603-7_13</a>","short":"T. Jacob, H. Ai, M. Quint, in:, Root Development, Springer, New York, 2026, pp. 165–176.","chicago":"Jacob, Tilman, Haiyue Ai, and Marcel Quint. “EdU-Based Quantitative Analysis of Cell Proliferation in Arabidopsis Root Meristems.” In <i>Root Development</i>, 3086:165–76. MIMB. New York: Springer, 2026. <a href=\"https://doi.org/10.1007/978-1-0716-5603-7_13\">https://doi.org/10.1007/978-1-0716-5603-7_13</a>.","ieee":"T. Jacob, H. Ai, and M. Quint, “EdU-Based Quantitative Analysis of Cell Proliferation in Arabidopsis Root Meristems,” in <i>Root Development</i>, vol. 3086, New York: Springer, 2026, pp. 165–176."},"keyword":["Root growth","Root development","Root meristem","Cell cycle","Cell division","S-phase","EdU","Arabidopsis thaliana","Microscopy"],"language":[{"iso":"eng"}],"oa_version":"None"},{"issue":"3","acknowledgement":"L.P. gratefully acknowledges fundings from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – GZ 2047/1, Projekt-ID 390685813. F.Q. gratefully acknowledges support from the Austrian Science Fund (FWF) project 10.55776/F65.","language":[{"iso":"eng"}],"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","publication_identifier":{"eissn":["1469-4425"],"issn":["0956-7925"]},"keyword":["optimal transport","discrete-to-continuum","homogenisation","linear growth","gamma-convergence"],"citation":{"ama":"Portinale L, Quattrocchi F. Discrete-to-continuum limits of optimal transport with linear growth on periodic graphs. <i>European Journal of Applied Mathematics</i>. 2026;37(3):614-642. doi:<a href=\"https://doi.org/10.1017/s0956792524000810\">10.1017/s0956792524000810</a>","mla":"Portinale, Lorenzo, and Filippo Quattrocchi. “Discrete-to-Continuum Limits of Optimal Transport with Linear Growth on Periodic Graphs.” <i>European Journal of Applied Mathematics</i>, vol. 37, no. 3, Cambridge University Press, 2026, pp. 614–42, doi:<a href=\"https://doi.org/10.1017/s0956792524000810\">10.1017/s0956792524000810</a>.","ista":"Portinale L, Quattrocchi F. 2026. Discrete-to-continuum limits of optimal transport with linear growth on periodic graphs. European Journal of Applied Mathematics. 37(3), 614–642.","short":"L. Portinale, F. Quattrocchi, European Journal of Applied Mathematics 37 (2026) 614–642.","apa":"Portinale, L., &#38; Quattrocchi, F. (2026). Discrete-to-continuum limits of optimal transport with linear growth on periodic graphs. <i>European Journal of Applied Mathematics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/s0956792524000810\">https://doi.org/10.1017/s0956792524000810</a>","ieee":"L. Portinale and F. Quattrocchi, “Discrete-to-continuum limits of optimal transport with linear growth on periodic graphs,” <i>European Journal of Applied Mathematics</i>, vol. 37, no. 3. Cambridge University Press, pp. 614–642, 2026.","chicago":"Portinale, Lorenzo, and Filippo Quattrocchi. “Discrete-to-Continuum Limits of Optimal Transport with Linear Growth on Periodic Graphs.” <i>European Journal of Applied Mathematics</i>. Cambridge University Press, 2026. <a href=\"https://doi.org/10.1017/s0956792524000810\">https://doi.org/10.1017/s0956792524000810</a>."},"file_date_updated":"2026-07-23T05:55:03Z","file":[{"file_id":"22386","relation":"main_file","file_size":612317,"creator":"dernst","success":1,"access_level":"open_access","date_updated":"2026-07-23T05:55:03Z","content_type":"application/pdf","checksum":"d038f4d00cbfbde2672c17138eab21c9","file_name":"2026_EuropJourAppliedMath_Portinale.pdf","date_created":"2026-07-23T05:55:03Z"}],"day":"01","article_type":"original","scopus_import":"1","supplementarymaterial":"no","volume":37,"abstract":[{"lang":"eng","text":"We prove discrete-to-continuum convergence for dynamical optimal transport on  Zd\r\n -periodic graphs with cost functional having linear growth at infinity. This result provides an answer to a problem left open by Gladbach, Kopfer, Maas, and Portinale (Calc Var Partial Differential Equations 62(5), 2023), where the convergence behaviour of discrete boundary-value dynamical transport problems is proved under the stronger assumption of superlinear growth. Our result extends the known literature to some important classes of examples, such as scaling limits of  1 -Wasserstein transport problems. Similarly to what happens in the quadratic case, the geometry of the graph plays a crucial role in the structure of the limit cost function, as we discuss in the final part of this work, which includes some visual representations."}],"project":[{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems"}],"researchdata_availability":"no","page":"614-642","ddc":["500"],"publication":"European Journal of Applied Mathematics","fulldoi":"https://doi.org/10.1017/s0956792524000810","das_tickbox":"0","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"20563"}]},"date_published":"2026-06-01T00:00:00Z","type":"journal_article","DOAJ_listed":"1","external_id":{"isi":["001381435800001"]},"date_created":"2024-12-23T11:03:59Z","publication_status":"published","department":[{"_id":"GradSch"},{"_id":"JaMa"}],"OA_type":"gold","OA_place":"publisher","article_processing_charge":"Yes","month":"06","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","has_accepted_license":"1","status":"public","quality_controlled":"1","doi":"10.1017/s0956792524000810","title":"Discrete-to-continuum limits of optimal transport with linear growth on periodic graphs","date_updated":"2026-11-09T23:31:08Z","year":"2026","_id":"18706","isi":1,"PlanS_conform":"1","author":[{"id":"30AD2CBC-F248-11E8-B48F-1D18A9856A87","first_name":"Lorenzo","last_name":"Portinale","full_name":"Portinale, Lorenzo"},{"full_name":"Quattrocchi, Filippo","last_name":"Quattrocchi","orcid":"0009-0000-9773-1931","first_name":"Filippo","id":"3ebd6ba8-edfb-11eb-afb5-91a9745ba308"}],"oa":1,"intvolume":"        37","publisher":"Cambridge University Press"},{"publication":"ACS Nano","ddc":["540"],"page":"78-88","ec_funded":1,"abstract":[{"text":"SnSe has emerged as one of the most promising materials for thermoelectric energy conversion due to its extraordinary performance in its single-crystal form and its low-cost constituent elements. However, to achieve an economic impact, the polycrystalline counterpart needs to replicate the performance of the single crystal. Herein, we optimize the thermoelectric performance of polycrystalline SnSe produced by consolidating solution-processed and surface-engineered SnSe particles. In particular, the SnSe particles are coated with CdSe molecular complexes that crystallize during the sintering process, forming CdSe nanoparticles. The presence of CdSe nanoparticles inhibits SnSe grain growth during the consolidation step due to Zener pinning, yielding a material with a high density of grain boundaries. Moreover, the resulting SnSe–CdSe nanocomposites present a large number of defects at different length scales, which significantly reduce the thermal conductivity. The produced SnSe–CdSe nanocomposites exhibit thermoelectric figures of merit up to 2.2 at 786 K, which is among the highest reported for solution-processed SnSe.","lang":"eng"}],"volume":16,"scopus_import":"1","day":"25","article_type":"original","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"grant_number":"665385","name":"International IST Doctoral Program","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"},{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"},{"_id":"9B8804FC-BA93-11EA-9121-9846C619BF3A","name":"Bottom-up Engineering for Thermoelectric Applications","grant_number":"M02889"}],"citation":{"chicago":"Liu, Yu, Mariano Calcabrini, Yuan Yu, Seungho Lee, Cheng Chang, Jérémy David, Tanmoy Ghosh, et al. “Defect Engineering in Solution-Processed Polycrystalline SnSe Leads to High Thermoelectric Performance.” <i>ACS Nano</i>. American Chemical Society, 2022. <a href=\"https://doi.org/10.1021/acsnano.1c06720\">https://doi.org/10.1021/acsnano.1c06720</a>.","ieee":"Y. Liu <i>et al.</i>, “Defect engineering in solution-processed polycrystalline SnSe leads to high thermoelectric performance,” <i>ACS Nano</i>, vol. 16, no. 1. American Chemical Society, pp. 78–88, 2022.","apa":"Liu, Y., Calcabrini, M., Yu, Y., Lee, S., Chang, C., David, J., … Ibáñez, M. (2022). Defect engineering in solution-processed polycrystalline SnSe leads to high thermoelectric performance. <i>ACS Nano</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsnano.1c06720\">https://doi.org/10.1021/acsnano.1c06720</a>","short":"Y. Liu, M. Calcabrini, Y. Yu, S. Lee, C. Chang, J. David, T. Ghosh, M.C. Spadaro, C. Xie, O. Cojocaru-Mirédin, J. Arbiol, M. Ibáñez, ACS Nano 16 (2022) 78–88.","ista":"Liu Y, Calcabrini M, Yu Y, Lee S, Chang C, David J, Ghosh T, Spadaro MC, Xie C, Cojocaru-Mirédin O, Arbiol J, Ibáñez M. 2022. Defect engineering in solution-processed polycrystalline SnSe leads to high thermoelectric performance. ACS Nano. 16(1), 78–88.","mla":"Liu, Yu, et al. “Defect Engineering in Solution-Processed Polycrystalline SnSe Leads to High Thermoelectric Performance.” <i>ACS Nano</i>, vol. 16, no. 1, American Chemical Society, 2022, pp. 78–88, doi:<a href=\"https://doi.org/10.1021/acsnano.1c06720\">10.1021/acsnano.1c06720</a>.","ama":"Liu Y, Calcabrini M, Yu Y, et al. Defect engineering in solution-processed polycrystalline SnSe leads to high thermoelectric performance. <i>ACS Nano</i>. 2022;16(1):78-88. doi:<a href=\"https://doi.org/10.1021/acsnano.1c06720\">10.1021/acsnano.1c06720</a>"},"keyword":["tin selenide","nanocomposite","grain growth","Zener pinning","thermoelectricity","annealing","solution processing"],"publication_identifier":{"eissn":["1936-086X"],"issn":["1936-0851"]},"file":[{"date_updated":"2022-03-02T16:17:29Z","success":1,"access_level":"open_access","creator":"cchlebak","relation":"main_file","file_id":"10808","file_size":9050764,"date_created":"2022-03-02T16:17:29Z","checksum":"74f9c1aa5f95c0b992a4328e8e0247b4","file_name":"2022_ACSNano_Liu.pdf","content_type":"application/pdf"}],"file_date_updated":"2022-03-02T16:17:29Z","language":[{"iso":"eng"}],"acknowledgement":"This work was financially supported by IST Austria and the Werner Siemens Foundation. Y.L. acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411. S.L. and M.C. received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 665385. J.D. acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement no. 665919 (P-SPHERE) cofunded by Severo Ochoa Programme. C.C. acknowledges funding from the FWF “Lise Meitner Fellowship” grant agreement M 2889-N. Y.Y. and O.C.-M. acknowledge the financial support from DFG within the project SFB 917: Nanoswitches. M.C.S. received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 754510 (PROBIST) and the Severo Ochoa programme. J.D. received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No. 665919 (P-SPHERE) cofunded by Severo Ochoa Programme. The ICN2 is funded by the CERCA Program/Generalitat de Catalunya and by the Severo Ochoa program of the Spanish Ministry of Economy, Industry, and Competitiveness (MINECO, grant no. SEV-2017-0706). ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO project NANOGEN (PID2020-116093RB-C43). This project received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement No. 823717-ESTEEM3. The FIB sample preparation was conducted in the LMA-INA-Universidad de Zaragoza.","issue":"1","oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"intvolume":"        16","publisher":"American Chemical Society","author":[{"orcid":"0000-0001-7313-6740","first_name":"Yu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","full_name":"Liu, Yu","last_name":"Liu"},{"first_name":"Mariano","id":"45D7531A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4566-5877","last_name":"Calcabrini","full_name":"Calcabrini, Mariano"},{"first_name":"Yuan","last_name":"Yu","full_name":"Yu, Yuan"},{"orcid":"0000-0002-6962-8598","id":"BB243B88-D767-11E9-B658-BC13E6697425","first_name":"Seungho","full_name":"Lee, Seungho","last_name":"Lee"},{"orcid":"0000-0002-9515-4277","first_name":"Cheng","id":"9E331C2E-9F27-11E9-AE48-5033E6697425","full_name":"Chang, Cheng","last_name":"Chang"},{"first_name":"Jérémy","last_name":"David","full_name":"David, Jérémy"},{"first_name":"Tanmoy","id":"a5fc9bc3-feff-11ea-93fe-e8015a3c7e9d","full_name":"Ghosh, Tanmoy","last_name":"Ghosh"},{"full_name":"Spadaro, Maria Chiara","last_name":"Spadaro","first_name":"Maria Chiara"},{"first_name":"Chenyang","last_name":"Xie","full_name":"Xie, Chenyang"},{"first_name":"Oana","full_name":"Cojocaru-Mirédin, Oana","last_name":"Cojocaru-Mirédin"},{"first_name":"Jordi","full_name":"Arbiol, Jordi","last_name":"Arbiol"},{"full_name":"Ibáñez, Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria"}],"corr_author":"1","oa":1,"year":"2022","title":"Defect engineering in solution-processed polycrystalline SnSe leads to high thermoelectric performance","date_updated":"2026-07-06T12:16:06Z","doi":"10.1021/acsnano.1c06720","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","has_accepted_license":"1","isi":1,"_id":"10042","date_created":"2021-09-24T07:55:12Z","external_id":{"isi":["000767223400008"],"pmid":["34549956"]},"month":"01","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"MaIb"}],"publication_status":"published","das_tickbox":"1","fulldoi":"https://doi.org/10.1021/acsnano.1c06720","date_published":"2022-01-25T00:00:00Z","type":"journal_article","pmid":1,"related_material":{"record":[{"relation":"dissertation_contains","id":"12885","status":"public"}]}},{"pmid":1,"type":"journal_article","date_published":"2021-08-26T00:00:00Z","fulldoi":"https://doi.org/10.3390/ijms22179222","publication_status":"published","department":[{"_id":"EvBe"}],"article_processing_charge":"Yes","month":"08","article_number":"9222","external_id":{"pmid":["34502129"],"isi":["000694347100001"]},"date_created":"2021-09-05T22:01:24Z","_id":"9986","isi":1,"quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","status":"public","doi":"10.3390/ijms22179222","date_updated":"2024-10-09T21:00:50Z","year":"2021","title":"Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants","oa":1,"author":[{"first_name":"Silvia Melina","last_name":"Velasquez","full_name":"Velasquez, Silvia Melina"},{"last_name":"Guo","full_name":"Guo, Xiaoyuan","first_name":"Xiaoyuan"},{"first_name":"Marçal","id":"460C6802-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4675-6893","last_name":"Gallemi","full_name":"Gallemi, Marçal"},{"full_name":"Aryal, Bibek","last_name":"Aryal","first_name":"Bibek"},{"full_name":"Venhuizen, Peter","last_name":"Venhuizen","first_name":"Peter"},{"last_name":"Barbez","full_name":"Barbez, Elke","first_name":"Elke"},{"last_name":"Dünser","full_name":"Dünser, Kai Alexander","first_name":"Kai Alexander"},{"full_name":"Darino, Martin","last_name":"Darino","first_name":"Martin"},{"first_name":"Aleš","full_name":"Pӗnčík, Aleš","last_name":"Pӗnčík"},{"full_name":"Novák, Ondřej","last_name":"Novák","first_name":"Ondřej"},{"first_name":"Maria","full_name":"Kalyna, Maria","last_name":"Kalyna"},{"full_name":"Mouille, Gregory","last_name":"Mouille","first_name":"Gregory"},{"orcid":"0000-0002-8510-9739","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","full_name":"Benková, Eva","last_name":"Benková"},{"last_name":"Bhalerao","full_name":"Bhalerao, Rishikesh P.","first_name":"Rishikesh P."},{"full_name":"Mravec, Jozef","last_name":"Mravec","first_name":"Jozef"},{"first_name":"Jürgen","last_name":"Kleine-Vehn","full_name":"Kleine-Vehn, Jürgen"}],"corr_author":"1","intvolume":"        22","publisher":"MDPI","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","issue":"17","acknowledgement":"We are grateful to Paul Knox, Markus Pauly, Malcom O’Neill, and Ignacio Zarra for providing published material; the BOKU-VIBT Imaging Center for access and M. Debreczeny for expertise; J.I. Thaker and Georg Seifert for critical reading.\r\n","language":[{"iso":"eng"}],"file_date_updated":"2021-09-07T09:04:53Z","file":[{"content_type":"application/pdf","checksum":"6b7055cf89f1b7ed8594c3fdf56f000b","file_name":"2021_IntJMolecularSciences_Velasquez.pdf","date_created":"2021-09-06T12:50:19Z","file_id":"9988","relation":"main_file","file_size":2162247,"creator":"cchlebak","access_level":"open_access","date_updated":"2021-09-07T09:04:53Z"}],"publication_identifier":{"issn":["1661-6596"],"eissn":["1422-0067"]},"keyword":["auxin","growth","cell wall","xyloglucans","hypocotyls","gravitropism"],"citation":{"chicago":"Velasquez, Silvia Melina, Xiaoyuan Guo, Marçal Gallemi, Bibek Aryal, Peter Venhuizen, Elke Barbez, Kai Alexander Dünser, et al. “Xyloglucan Remodeling Defines Auxin-Dependent Differential Tissue Expansion in Plants.” <i>International Journal of Molecular Sciences</i>. MDPI, 2021. <a href=\"https://doi.org/10.3390/ijms22179222\">https://doi.org/10.3390/ijms22179222</a>.","ieee":"S. M. Velasquez <i>et al.</i>, “Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants,” <i>International Journal of Molecular Sciences</i>, vol. 22, no. 17. MDPI, 2021.","short":"S.M. Velasquez, X. Guo, M. Gallemi, B. Aryal, P. Venhuizen, E. Barbez, K.A. Dünser, M. Darino, A. Pӗnčík, O. Novák, M. Kalyna, G. Mouille, E. Benková, R.P. Bhalerao, J. Mravec, J. Kleine-Vehn, International Journal of Molecular Sciences 22 (2021).","apa":"Velasquez, S. M., Guo, X., Gallemi, M., Aryal, B., Venhuizen, P., Barbez, E., … Kleine-Vehn, J. (2021). Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants. <i>International Journal of Molecular Sciences</i>. MDPI. <a href=\"https://doi.org/10.3390/ijms22179222\">https://doi.org/10.3390/ijms22179222</a>","mla":"Velasquez, Silvia Melina, et al. “Xyloglucan Remodeling Defines Auxin-Dependent Differential Tissue Expansion in Plants.” <i>International Journal of Molecular Sciences</i>, vol. 22, no. 17, 9222, MDPI, 2021, doi:<a href=\"https://doi.org/10.3390/ijms22179222\">10.3390/ijms22179222</a>.","ista":"Velasquez SM, Guo X, Gallemi M, Aryal B, Venhuizen P, Barbez E, Dünser KA, Darino M, Pӗnčík A, Novák O, Kalyna M, Mouille G, Benková E, Bhalerao RP, Mravec J, Kleine-Vehn J. 2021. Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants. International Journal of Molecular Sciences. 22(17), 9222.","ama":"Velasquez SM, Guo X, Gallemi M, et al. Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants. <i>International Journal of Molecular Sciences</i>. 2021;22(17). doi:<a href=\"https://doi.org/10.3390/ijms22179222\">10.3390/ijms22179222</a>"},"article_type":"original","day":"26","scopus_import":"1","volume":22,"abstract":[{"text":"Size control is a fundamental question in biology, showing incremental complexity in plants, whose cells possess a rigid cell wall. The phytohormone auxin is a vital growth regulator with central importance for differential growth control. Our results indicate that auxin-reliant growth programs affect the molecular complexity of xyloglucans, the major type of cell wall hemicellulose in eudicots. Auxin-dependent induction and repression of growth coincide with reduced and enhanced molecular complexity of xyloglucans, respectively. In agreement with a proposed function in growth control, genetic interference with xyloglucan side decorations distinctly modulates auxin-dependent differential growth rates. Our work proposes that auxin-dependent growth programs have a spatially defined effect on xyloglucan’s molecular structure, which in turn affects cell wall mechanics and specifies differential, gravitropic hypocotyl growth.","lang":"eng"}],"publication":"International Journal of Molecular Sciences","ddc":["575"]},{"file_date_updated":"2020-07-14T12:48:09Z","file":[{"content_type":"application/zip","file_name":"natComm_2020_scripts.zip","checksum":"5c321dbbb6d4b3c85da786fd3ebbdc98","date_created":"2020-07-06T20:38:27Z","file_size":255770756,"file_id":"8098","relation":"main_file","creator":"bkavcic","access_level":"open_access","date_updated":"2020-07-14T12:48:09Z"}],"month":"07","article_processing_charge":"No","department":[{"_id":"GaTk"}],"date_created":"2020-07-06T20:40:19Z","citation":{"apa":"Kavcic, B. (2020). Analysis scripts and research data for the paper “Mechanisms of drug interactions between translation-inhibiting antibiotics.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:8097\">https://doi.org/10.15479/AT:ISTA:8097</a>","short":"B. Kavcic, (2020).","chicago":"Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics.’” Institute of Science and Technology Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:8097\">https://doi.org/10.15479/AT:ISTA:8097</a>.","ieee":"B. Kavcic, “Analysis scripts and research data for the paper ‘Mechanisms of drug interactions between translation-inhibiting antibiotics.’” Institute of Science and Technology Austria, 2020.","ama":"Kavcic B. Analysis scripts and research data for the paper “Mechanisms of drug interactions between translation-inhibiting antibiotics.” 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:8097\">10.15479/AT:ISTA:8097</a>","ista":"Kavcic B. 2020. Analysis scripts and research data for the paper ‘Mechanisms of drug interactions between translation-inhibiting antibiotics’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:8097\">10.15479/AT:ISTA:8097</a>.","mla":"Kavcic, Bor. <i>Analysis Scripts and Research Data for the Paper “Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics.”</i> Institute of Science and Technology Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:8097\">10.15479/AT:ISTA:8097</a>."},"keyword":["Escherichia coli","antibiotic combinations","translation","growth laws","drug interactions","bacterial physiology","translation inhibitors"],"oa_version":"Published Version","date_published":"2020-07-15T00:00:00Z","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"type":"research_data","fulldoi":"https://doi.org/10.15479/AT:ISTA:8097","oa":1,"author":[{"orcid":"0000-0001-6041-254X","id":"350F91D2-F248-11E8-B48F-1D18A9856A87","first_name":"Bor","full_name":"Kavcic, Bor","last_name":"Kavcic"}],"publisher":"Institute of Science and Technology Austria","contributor":[{"first_name":"Gašper","contributor_type":"research_group","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455","last_name":"Tkačik"},{"contributor_type":"research_group","first_name":"Tobias","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","last_name":"Bollenbach"}],"_id":"8097","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","status":"public","day":"15","acknowledged_ssus":[{"_id":"LifeSc"}],"year":"2020","title":"Analysis scripts and research data for the paper \"Mechanisms of drug interactions between translation-inhibiting antibiotics\"","date_updated":"2024-02-21T12:40:51Z","abstract":[{"lang":"eng","text":"Antibiotics that interfere with translation, when combined, interact in diverse and difficult-to-predict ways. Here, we explain these interactions by \"translation bottlenecks\": points in the translation cycle where antibiotics block ribosomal progression. To elucidate the underlying mechanisms of drug interactions between translation inhibitors, we generate translation bottlenecks genetically using inducible control of translation factors that regulate well-defined translation cycle steps. These perturbations accurately mimic antibiotic action and drug interactions, supporting that the interplay of different translation bottlenecks causes these interactions. We further show that growth laws, combined with drug uptake and binding kinetics, enable the direct prediction of a large fraction of observed interactions, yet fail to predict suppression. However, varying two translation bottlenecks simultaneously supports that dense traffic of ribosomes and competition for translation factors account for the previously unexplained suppression. These results highlight the importance of \"continuous epistasis\" in bacterial physiology."}],"doi":"10.15479/AT:ISTA:8097"},{"doi":"10.15479/AT:ISTA:8930","year":"2020","title":"Analysis scripts and research data for the paper \"Minimal biophysical model of combined antibiotic action\"","date_updated":"2025-06-12T06:33:18Z","abstract":[{"lang":"eng","text":"Phenomenological relations such as Ohm’s or Fourier’s law have a venerable history in physics but are still scarce in biology. This situation restrains predictive theory. Here, we build on bacterial “growth laws,” which capture physiological feedback between translation and cell growth, to construct a minimal biophysical model for the combined action of ribosome-targeting antibiotics. Our model predicts drug interactions like antagonism or synergy solely from responses to individual drugs. We provide analytical results for limiting cases, which agree well with numerical results. We systematically refine the model by including direct physical interactions of different antibiotics on the ribosome. In a limiting case, our model provides a mechanistic underpinning for recent predictions of higher-order interactions that were derived using entropy maximization. We further refine the model to include the effects of antibiotics that mimic starvation and the presence of resistance genes. We describe the impact of a starvation-mimicking antibiotic on drug interactions analytically and verify it experimentally. Our extended model suggests a change in the type of drug interaction that depends on the strength of resistance, which challenges established rescaling paradigms. We experimentally show that the presence of unregulated resistance genes can lead to altered drug interaction, which agrees with the prediction of the model. While minimal, the model is readily adaptable and opens the door to predicting interactions of second and higher-order in a broad range of biological systems."}],"day":"10","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","_id":"8930","contributor":[{"last_name":"Tkačik","orcid":"0000-0002-6699-1455","contributor_type":"supervisor","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gašper"},{"last_name":"Bollenbach","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","first_name":"Tobias","contributor_type":"supervisor"}],"ddc":["570"],"publisher":"Institute of Science and Technology Austria","author":[{"orcid":"0000-0001-6041-254X","first_name":"Bor","id":"350F91D2-F248-11E8-B48F-1D18A9856A87","full_name":"Kavcic, Bor","last_name":"Kavcic"}],"corr_author":"1","oa":1,"fulldoi":"https://doi.org/10.15479/AT:ISTA:8930","date_published":"2020-12-10T00:00:00Z","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"type":"research_data","oa_version":"Published Version","related_material":{"record":[{"status":"public","id":"8997","relation":"used_in_publication"}]},"keyword":["Escherichia coli","antibiotic combinations","translation","growth laws","drug interactions","bacterial physiology","translation inhibitors"],"citation":{"ama":"Kavcic B. Analysis scripts and research data for the paper “Minimal biophysical model of combined antibiotic action.” 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:8930\">10.15479/AT:ISTA:8930</a>","mla":"Kavcic, Bor. <i>Analysis Scripts and Research Data for the Paper “Minimal Biophysical Model of Combined Antibiotic Action.”</i> Institute of Science and Technology Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:8930\">10.15479/AT:ISTA:8930</a>.","ista":"Kavcic B. 2020. Analysis scripts and research data for the paper ‘Minimal biophysical model of combined antibiotic action’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:8930\">10.15479/AT:ISTA:8930</a>.","short":"B. Kavcic, (2020).","apa":"Kavcic, B. (2020). Analysis scripts and research data for the paper “Minimal biophysical model of combined antibiotic action.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:8930\">https://doi.org/10.15479/AT:ISTA:8930</a>","ieee":"B. Kavcic, “Analysis scripts and research data for the paper ‘Minimal biophysical model of combined antibiotic action.’” Institute of Science and Technology Austria, 2020.","chicago":"Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Minimal Biophysical Model of Combined Antibiotic Action.’” Institute of Science and Technology Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:8930\">https://doi.org/10.15479/AT:ISTA:8930</a>."},"date_created":"2020-12-09T15:04:02Z","department":[{"_id":"GaTk"}],"month":"12","file":[{"file_name":"PLoSCompBiol2020_datarep.zip","checksum":"60a818edeffaa7da1ebf5f8fbea9ba18","date_created":"2020-12-09T15:00:19Z","content_type":"application/zip","access_level":"open_access","success":1,"date_updated":"2020-12-09T15:00:19Z","file_size":315494370,"file_id":"8932","relation":"main_file","creator":"bkavcic"}],"article_processing_charge":"No","file_date_updated":"2020-12-09T15:00:19Z"},{"issue":"6","language":[{"iso":"eng"}],"oa_version":"Published Version","publication_identifier":{"issn":["1936-0851"],"eissn":["1936-086X"]},"keyword":["colloidal nanoparticles","asymmetric nanoparticles","inorganic ligands","heterostructures","catalyst assisted growth","nanocomposites","thermoelectrics"],"citation":{"ista":"Ibáñez M, Genç A, Hasler R, Liu Y, Dobrozhan O, Nazarenko O, Mata M de la, Arbiol J, Cabot A, Kovalenko MV. 2019. Tuning transport properties in thermoelectric nanocomposites through inorganic ligands and heterostructured building blocks. ACS Nano. 13(6), 6572–6580.","mla":"Ibáñez, Maria, et al. “Tuning Transport Properties in Thermoelectric Nanocomposites through Inorganic Ligands and Heterostructured Building Blocks.” <i>ACS Nano</i>, vol. 13, no. 6, American Chemical Society, 2019, pp. 6572–80, doi:<a href=\"https://doi.org/10.1021/acsnano.9b00346\">10.1021/acsnano.9b00346</a>.","ama":"Ibáñez M, Genç A, Hasler R, et al. Tuning transport properties in thermoelectric nanocomposites through inorganic ligands and heterostructured building blocks. <i>ACS Nano</i>. 2019;13(6):6572-6580. doi:<a href=\"https://doi.org/10.1021/acsnano.9b00346\">10.1021/acsnano.9b00346</a>","ieee":"M. Ibáñez <i>et al.</i>, “Tuning transport properties in thermoelectric nanocomposites through inorganic ligands and heterostructured building blocks,” <i>ACS Nano</i>, vol. 13, no. 6. American Chemical Society, pp. 6572–6580, 2019.","chicago":"Ibáñez, Maria, Aziz Genç, Roger Hasler, Yu Liu, Oleksandr Dobrozhan, Olga Nazarenko, María de la Mata, Jordi Arbiol, Andreu Cabot, and Maksym V. Kovalenko. “Tuning Transport Properties in Thermoelectric Nanocomposites through Inorganic Ligands and Heterostructured Building Blocks.” <i>ACS Nano</i>. American Chemical Society, 2019. <a href=\"https://doi.org/10.1021/acsnano.9b00346\">https://doi.org/10.1021/acsnano.9b00346</a>.","apa":"Ibáñez, M., Genç, A., Hasler, R., Liu, Y., Dobrozhan, O., Nazarenko, O., … Kovalenko, M. V. (2019). Tuning transport properties in thermoelectric nanocomposites through inorganic ligands and heterostructured building blocks. <i>ACS Nano</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsnano.9b00346\">https://doi.org/10.1021/acsnano.9b00346</a>","short":"M. Ibáñez, A. Genç, R. Hasler, Y. Liu, O. Dobrozhan, O. Nazarenko, M. de la Mata, J. Arbiol, A. Cabot, M.V. Kovalenko, ACS Nano 13 (2019) 6572–6580."},"file_date_updated":"2020-07-14T12:47:33Z","file":[{"file_name":"2019_ACSNano_Ibanez.pdf","date_created":"2019-07-16T14:17:09Z","content_type":"application/pdf","access_level":"open_access","date_updated":"2020-07-14T12:47:33Z","file_size":8628690,"file_id":"6644","relation":"main_file","creator":"dernst"}],"article_type":"original","day":"25","scopus_import":"1","volume":13,"abstract":[{"text":"Methodologies that involve the use of nanoparticles as “artificial atoms” to rationally build materials in a bottom-up fashion are particularly well-suited to control the matter at the nanoscale. Colloidal synthetic routes allow for an exquisite control over such “artificial atoms” in terms of size, shape, and crystal phase as well as core and surface compositions. We present here a bottom-up approach to produce Pb–Ag–K–S–Te nanocomposites, which is a highly promising system for thermoelectric energy conversion. First, we developed a high-yield and scalable colloidal synthesis route to uniform lead sulfide (PbS) nanorods, whose tips are made of silver sulfide (Ag2S). We then took advantage of the large surface-to-volume ratio to introduce a p-type dopant (K) by replacing native organic ligands with K2Te. Upon thermal consolidation, K2Te-surface modified PbS–Ag2S nanorods yield p-type doped nanocomposites with PbTe and PbS as major phases and Ag2S and Ag2Te as embedded nanoinclusions. Thermoelectric characterization of such consolidated nanosolids showed a high thermoelectric figure-of-merit of 1 at 620 K.","lang":"eng"}],"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"}],"page":"6572-6580","publication":"ACS Nano","ddc":["540"],"ec_funded":1,"fulldoi":"https://doi.org/10.1021/acsnano.9b00346","pmid":1,"date_published":"2019-06-25T00:00:00Z","type":"journal_article","external_id":{"isi":["000473248300043"],"pmid":["31185159"]},"date_created":"2019-06-18T13:54:34Z","publication_status":"published","department":[{"_id":"MaIb"}],"article_processing_charge":"Yes (in subscription journal)","month":"06","has_accepted_license":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","quality_controlled":"1","doi":"10.1021/acsnano.9b00346","year":"2019","title":"Tuning transport properties in thermoelectric nanocomposites through inorganic ligands and heterostructured building blocks","date_updated":"2025-04-14T07:44:06Z","_id":"6566","isi":1,"author":[{"first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","full_name":"Ibáñez, Maria"},{"full_name":"Genç, Aziz","last_name":"Genç","first_name":"Aziz"},{"first_name":"Roger","full_name":"Hasler, Roger","last_name":"Hasler"},{"first_name":"Yu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7313-6740","last_name":"Liu","full_name":"Liu, Yu"},{"last_name":"Dobrozhan","full_name":"Dobrozhan, Oleksandr","first_name":"Oleksandr"},{"full_name":"Nazarenko, Olga","last_name":"Nazarenko","first_name":"Olga"},{"full_name":"Mata, María de la","last_name":"Mata","first_name":"María de la"},{"full_name":"Arbiol, Jordi","last_name":"Arbiol","first_name":"Jordi"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"},{"last_name":"Kovalenko","full_name":"Kovalenko, Maksym V.","first_name":"Maksym V."}],"oa":1,"intvolume":"        13","publisher":"American Chemical Society"},{"citation":{"ama":"Fatichi S, Pappas C, Zscheischler J, Leuzinger S. Modelling carbon sources and sinks in terrestrial vegetation. <i>New Phytologist</i>. 2019;221(2):652-668. doi:<a href=\"https://doi.org/10.1111/nph.15451\">10.1111/nph.15451</a>","ista":"Fatichi S, Pappas C, Zscheischler J, Leuzinger S. 2019. Modelling carbon sources and sinks in terrestrial vegetation. New Phytologist. 221(2), 652–668.","mla":"Fatichi, Simone, et al. “Modelling Carbon Sources and Sinks in Terrestrial Vegetation.” <i>New Phytologist</i>, vol. 221, no. 2, Wiley, 2019, pp. 652–68, doi:<a href=\"https://doi.org/10.1111/nph.15451\">10.1111/nph.15451</a>.","apa":"Fatichi, S., Pappas, C., Zscheischler, J., &#38; Leuzinger, S. (2019). Modelling carbon sources and sinks in terrestrial vegetation. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.15451\">https://doi.org/10.1111/nph.15451</a>","short":"S. Fatichi, C. Pappas, J. Zscheischler, S. Leuzinger, New Phytologist 221 (2019) 652–668.","ieee":"S. Fatichi, C. Pappas, J. Zscheischler, and S. Leuzinger, “Modelling carbon sources and sinks in terrestrial vegetation,” <i>New Phytologist</i>, vol. 221, no. 2. Wiley, pp. 652–668, 2019.","chicago":"Fatichi, Simone, Christoforos Pappas, Jakob Zscheischler, and Sebastian Leuzinger. “Modelling Carbon Sources and Sinks in Terrestrial Vegetation.” <i>New Phytologist</i>. Wiley, 2019. <a href=\"https://doi.org/10.1111/nph.15451\">https://doi.org/10.1111/nph.15451</a>."},"keyword":["Ecosystem modelling","Nonstructural carbohydrates","Carbon cycle","Photosynthesis","Plant growth","respiration"],"publication_identifier":{"issn":["0028-646X"],"eissn":["1469-8137"]},"oa_version":"Published Version","language":[{"iso":"eng"}],"issue":"2","publication":"New Phytologist","page":"652-668","abstract":[{"text":"The increase in atmospheric CO2 in the future is one of the most certain projections in environmental sciences. Understanding whether vegetation carbon assimilation, growth, and changes in vegetation carbon stocks are affected by higher atmospheric CO2 and translating this understanding in mechanistic vegetation models is of utmost importance. This is highlighted by inconsistencies between global-scale studies that attribute terrestrial carbon sinks to CO2 stimulation of gross and net primary production on the one hand, and forest inventories, tree-scale studies, and plant physiological evidence showing a much less pronounced CO2 fertilization effect on the other hand. Here, we review how plant carbon sources and sinks are currently described in terrestrial biosphere models. We highlight an uneven representation of complexity between the modelling of photosynthesis and other processes, such as plant respiration, direct carbon sinks, and carbon allocation, largely driven by available observations. Despite a general lack of data on carbon sink dynamics to drive model improvements, ways forward toward a mechanistic representation of plant carbon sinks are discussed, leveraging on results obtained from plant-scale models and on observations geared toward model developments.","lang":"eng"}],"volume":221,"scopus_import":"1","article_type":"review","day":"01","OA_place":"publisher","month":"01","article_processing_charge":"No","OA_type":"free access","publication_status":"published","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1111/nph.15451"}],"date_created":"2026-07-27T12:30:24Z","external_id":{"pmid":["30339280"]},"type":"journal_article","date_published":"2019-01-01T00:00:00Z","pmid":1,"das_tickbox":"1","fulldoi":"https://doi.org/10.1111/nph.15451","extern":"1","intvolume":"       221","publisher":"Wiley","oa":1,"author":[{"full_name":"Fatichi, Simone","last_name":"Fatichi","first_name":"Simone","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6"},{"full_name":"Pappas, Christoforos","last_name":"Pappas","first_name":"Christoforos"},{"full_name":"Zscheischler, Jakob","last_name":"Zscheischler","first_name":"Jakob"},{"first_name":"Sebastian","full_name":"Leuzinger, Sebastian","last_name":"Leuzinger"}],"_id":"22522","date_updated":"2026-08-06T07:39:23Z","year":"2019","title":"Modelling carbon sources and sinks in terrestrial vegetation","doi":"10.1111/nph.15451","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","status":"public"}]