[{"quality_controlled":"1","external_id":{"arxiv":["2103.09481"],"isi":["000917225500013"]},"date_created":"2022-07-11T12:19:59Z","status":"public","publication_status":"published","date_updated":"2024-10-21T06:01:47Z","month":"10","publisher":"Elsevier","article_processing_charge":"No","abstract":[{"lang":"eng","text":"We revisit two basic Direct Simulation Monte Carlo Methods to model aggregation kinetics and extend them for aggregation processes with collisional fragmentation (shattering). We test the performance and accuracy of the extended methods and compare their performance with efficient deterministic finite-difference method applied to the same model. We validate the stochastic methods on the test problems and apply them to verify the existence of oscillating regimes in the aggregation-fragmentation kinetics recently detected in deterministic simulations. We confirm the emergence of steady oscillations of densities in such systems and prove the stability of the\r\noscillations with respect to fluctuations and noise."}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2103.09481"}],"department":[{"_id":"GradSch"},{"_id":"ChWo"}],"ddc":["518"],"citation":{"short":"A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).","ista":"Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. 2022. Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics. Journal of Computational Physics. 467, 111439.","mla":"Kalinov, Aleksei, et al. “Direct Simulation Monte Carlo for New Regimes in Aggregation-Fragmentation Kinetics.” <i>Journal of Computational Physics</i>, vol. 467, 111439, Elsevier, 2022, doi:<a href=\"https://doi.org/10.1016/j.jcp.2022.111439\">10.1016/j.jcp.2022.111439</a>.","chicago":"Kalinov, Aleksei, A.I. Osinskiy, S.A. Matveev, W. Otieno, and N.V. Brilliantov. “Direct Simulation Monte Carlo for New Regimes in Aggregation-Fragmentation Kinetics.” <i>Journal of Computational Physics</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.jcp.2022.111439\">https://doi.org/10.1016/j.jcp.2022.111439</a>.","ama":"Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics. <i>Journal of Computational Physics</i>. 2022;467. doi:<a href=\"https://doi.org/10.1016/j.jcp.2022.111439\">10.1016/j.jcp.2022.111439</a>","apa":"Kalinov, A., Osinskiy, A. I., Matveev, S. A., Otieno, W., &#38; Brilliantov, N. V. (2022). Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics. <i>Journal of Computational Physics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcp.2022.111439\">https://doi.org/10.1016/j.jcp.2022.111439</a>","ieee":"A. Kalinov, A. I. Osinskiy, S. A. Matveev, W. Otieno, and N. V. Brilliantov, “Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics,” <i>Journal of Computational Physics</i>, vol. 467. Elsevier, 2022."},"author":[{"first_name":"Aleksei","full_name":"Kalinov, Aleksei","last_name":"Kalinov","orcid":"0000-0003-2189-3904","id":"44b7120e-eb97-11eb-a6c2-e1557aa81d02"},{"last_name":"Osinskiy","full_name":"Osinskiy, A.I.","first_name":"A.I."},{"full_name":"Matveev, S.A.","first_name":"S.A.","last_name":"Matveev"},{"full_name":"Otieno, W.","first_name":"W.","last_name":"Otieno"},{"full_name":"Brilliantov, N.V.","first_name":"N.V.","last_name":"Brilliantov"}],"doi":"10.1016/j.jcp.2022.111439","intvolume":"       467","publication":"Journal of Computational Physics","day":"15","article_number":"111439","title":"Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics","isi":1,"oa":1,"date_published":"2022-10-15T00:00:00Z","fulldoi":"https://doi.org/10.1016/j.jcp.2022.111439","publication_identifier":{"issn":["0021-9991"]},"scopus_import":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_type":"original","keyword":["Computer Science Applications","Physics and Astronomy (miscellaneous)","Applied Mathematics","Computational Mathematics","Modeling and Simulation","Numerical Analysis"],"arxiv":1,"year":"2022","oa_version":"Preprint","_id":"11556","acknowledgement":"Zhores supercomputer of Skolkovo Institute of Science and Technology [68] has been used in the present research. S.A.M. was supported by Moscow Center for Fundamental and Applied Mathematics (the agreement with the Ministry of Education and Science of the Russian Federation No. 075-15-2019-1624). A.I.O. acknowledges RFBR project No. 20-31-90022. N.V.B. acknowledges the support of the Analytical Center (subsidy agreement 000000D730321P5Q0002, Grant No. 70-2021-00145 02.11.2021).","language":[{"iso":"eng"}],"type":"journal_article","volume":467},{"publisher":"AIP Publishing","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","abstract":[{"text":"We consider a gas of N bosons with interactions in the mean-field scaling regime. We review the proof of an asymptotic expansion of its low-energy spectrum, eigenstates, and dynamics, which provides corrections to Bogoliubov theory to all orders in 1/ N. This is based on joint works with Petrat, Pickl, Seiringer, and Soffer. In addition, we derive a full asymptotic expansion of the ground state one-body reduced density matrix.","lang":"eng"}],"department":[{"_id":"RoSe"}],"file_date_updated":"2022-08-11T07:03:02Z","citation":{"short":"L. Bossmann, Journal of Mathematical Physics 63 (2022).","ista":"Bossmann L. 2022. Low-energy spectrum and dynamics of the weakly interacting Bose gas. Journal of Mathematical Physics. 63(6), 061102.","chicago":"Bossmann, Lea. “Low-Energy Spectrum and Dynamics of the Weakly Interacting Bose Gas.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0089983\">https://doi.org/10.1063/5.0089983</a>.","apa":"Bossmann, L. (2022). Low-energy spectrum and dynamics of the weakly interacting Bose gas. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0089983\">https://doi.org/10.1063/5.0089983</a>","ieee":"L. Bossmann, “Low-energy spectrum and dynamics of the weakly interacting Bose gas,” <i>Journal of Mathematical Physics</i>, vol. 63, no. 6. AIP Publishing, 2022.","ama":"Bossmann L. Low-energy spectrum and dynamics of the weakly interacting Bose gas. <i>Journal of Mathematical Physics</i>. 2022;63(6). doi:<a href=\"https://doi.org/10.1063/5.0089983\">10.1063/5.0089983</a>","mla":"Bossmann, Lea. “Low-Energy Spectrum and Dynamics of the Weakly Interacting Bose Gas.” <i>Journal of Mathematical Physics</i>, vol. 63, no. 6, 061102, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0089983\">10.1063/5.0089983</a>."},"ddc":["530"],"author":[{"last_name":"Bossmann","id":"A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425","orcid":"0000-0002-6854-1343","full_name":"Bossmann, Lea","first_name":"Lea"}],"intvolume":"        63","doi":"10.1063/5.0089983","quality_controlled":"1","external_id":{"isi":["000809648100002"],"arxiv":["2203.00730"]},"date_created":"2022-08-11T06:37:52Z","status":"public","publication_status":"published","issue":"6","date_updated":"2025-04-14T07:43:58Z","project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"month":"06","ec_funded":1,"article_type":"original","keyword":["Mathematical Physics","Statistical and Nonlinear Physics"],"oa_version":"Published Version","_id":"11783","year":"2022","arxiv":1,"acknowledgement":"The author thanks Nataˇsa Pavlovic, Sören Petrat, Peter Pickl, Robert Seiringer, and Avy Soffer for the collaboration on Refs. 1, 2 and 21. Funding from the European Union’s Horizon 2020 Research and Innovation Programme under Marie Skℓodowska-Curie Grant Agreement\r\nNo. 754411 is gratefully acknowledged.","language":[{"iso":"eng"}],"file":[{"success":1,"date_created":"2022-08-11T07:03:02Z","file_id":"11784","date_updated":"2022-08-11T07:03:02Z","relation":"main_file","file_name":"2022_JourMathPhysics_Bossmann.pdf","creator":"dernst","file_size":5957888,"content_type":"application/pdf","checksum":"d0d32c338c1896680174be88c70968fa","access_level":"open_access"}],"type":"journal_article","volume":63,"publication":"Journal of Mathematical Physics","day":"10","title":"Low-energy spectrum and dynamics of the weakly interacting Bose gas","article_number":"061102","oa":1,"isi":1,"fulldoi":"https://doi.org/10.1063/5.0089983","date_published":"2022-06-10T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"corr_author":"1","publication_identifier":{"issn":["0022-2488"],"eissn":["1089-7658"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1"},{"scopus_import":"1","publication_identifier":{"eissn":["1572-9613"],"issn":["0022-4715"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","corr_author":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_published":"2022-07-01T00:00:00Z","fulldoi":"https://doi.org/10.1007/s10955-022-02940-4","isi":1,"oa":1,"article_number":"9","title":"Large deviation estimates for weakly interacting bosons","day":"01","publication":"Journal of Statistical Physics","volume":188,"type":"journal_article","file":[{"success":1,"date_created":"2022-08-18T08:09:00Z","file_name":"2022_JournalStatisticalPhysics_Rademacher.pdf","relation":"main_file","date_updated":"2022-08-18T08:09:00Z","file_id":"11922","access_level":"open_access","checksum":"44418cb44f07fa21ed3907f85abf7f39","content_type":"application/pdf","file_size":483481,"creator":"dernst"}],"language":[{"iso":"eng"}],"acknowledgement":"The authors thank Gérard Ben Arous for pointing out the question of a lower bound. Funding from the European Union’s Horizon 2020 research and innovation programme under the ERC Grant Agreement No. 694227 (R.S.) and under the Marie Skłodowska-Curie Grant Agreement No. 754411 (S.R.) is gratefully acknowledged.\r\nOpen access funding provided by IST Austria.","year":"2022","_id":"11917","oa_version":"Published Version","keyword":["Mathematical Physics","Statistical and Nonlinear Physics"],"article_type":"original","ec_funded":1,"month":"07","project":[{"call_identifier":"H2020","grant_number":"694227","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"},{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"date_updated":"2025-04-14T07:26:59Z","publication_status":"published","status":"public","date_created":"2022-08-18T07:23:26Z","external_id":{"isi":["000805175000001"]},"quality_controlled":"1","doi":"10.1007/s10955-022-02940-4","intvolume":"       188","author":[{"orcid":"0000-0001-5059-4466","id":"856966FE-A408-11E9-977E-802DE6697425","last_name":"Rademacher","first_name":"Simone Anna Elvira","full_name":"Rademacher, Simone Anna Elvira"},{"last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","first_name":"Robert"}],"ddc":["510"],"citation":{"mla":"Rademacher, Simone Anna Elvira, and Robert Seiringer. “Large Deviation Estimates for Weakly Interacting Bosons.” <i>Journal of Statistical Physics</i>, vol. 188, 9, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1007/s10955-022-02940-4\">10.1007/s10955-022-02940-4</a>.","chicago":"Rademacher, Simone Anna Elvira, and Robert Seiringer. “Large Deviation Estimates for Weakly Interacting Bosons.” <i>Journal of Statistical Physics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s10955-022-02940-4\">https://doi.org/10.1007/s10955-022-02940-4</a>.","apa":"Rademacher, S. A. E., &#38; Seiringer, R. (2022). Large deviation estimates for weakly interacting bosons. <i>Journal of Statistical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10955-022-02940-4\">https://doi.org/10.1007/s10955-022-02940-4</a>","ieee":"S. A. E. Rademacher and R. Seiringer, “Large deviation estimates for weakly interacting bosons,” <i>Journal of Statistical Physics</i>, vol. 188. Springer Nature, 2022.","ama":"Rademacher SAE, Seiringer R. Large deviation estimates for weakly interacting bosons. <i>Journal of Statistical Physics</i>. 2022;188. doi:<a href=\"https://doi.org/10.1007/s10955-022-02940-4\">10.1007/s10955-022-02940-4</a>","short":"S.A.E. Rademacher, R. Seiringer, Journal of Statistical Physics 188 (2022).","ista":"Rademacher SAE, Seiringer R. 2022. Large deviation estimates for weakly interacting bosons. Journal of Statistical Physics. 188, 9."},"file_date_updated":"2022-08-18T08:09:00Z","department":[{"_id":"RoSe"}],"abstract":[{"text":"We study the many-body dynamics of an initially factorized bosonic wave function in the mean-field regime. We prove large deviation estimates for the fluctuations around the condensate. We derive an upper bound extending a recent result to more general interactions. Furthermore, we derive a new lower bound which agrees with the upper bound in leading order.","lang":"eng"}],"article_processing_charge":"Yes (via OA deal)","publisher":"Springer Nature","has_accepted_license":"1"},{"language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"SSU"}],"pmid":1,"acknowledgement":"We thank F. Marr and A. Schlögl for technical assistance, E. Kralli-Beller for manuscript editing, as well as C. Sommer and the Imaging and Optics Facility of the Institute of Science and Technology Austria (ISTA) for image analysis scripts and microscopy support. We extend our gratitude to J. Wallenschus and D. Rangel Guerrero for technical assistance acquiring single-unit data and I. Gridchyn for help with single-unit clustering. Finally, we also thank B. Suter for discussions, A. Saunders, M. Jösch, and H. Monyer for critically reading earlier versions of the manuscript, C. Petersen for sharing clearing protocols, and the Scientific Service Units of ISTA for efficient support. This project was funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (ERC advanced grant No 692692 to P.J.) and the Fond zur Förderung der Wissenschaftlichen Forschung (Z 312-B27, Wittgenstein award for P.J. and I3600-B27 for J.G.D. and P.V.).","volume":13,"type":"journal_article","file":[{"success":1,"date_created":"2022-08-26T11:51:40Z","date_updated":"2022-08-26T11:51:40Z","file_id":"11990","relation":"main_file","file_name":"2022_NatureCommunications_BenSimon.pdf","file_size":5910357,"creator":"dernst","checksum":"405936d9e4d33625d80c093c9713a91f","access_level":"open_access","content_type":"application/pdf"}],"keyword":["General Physics and Astronomy","General Biochemistry","Genetics and Molecular Biology","General Chemistry","Multidisciplinary"],"article_type":"original","oa_version":"Published Version","_id":"11951","year":"2022","fulldoi":"https://doi.org/10.1038/s41467-022-32559-8","date_published":"2022-08-16T00:00:00Z","oa":1,"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","publication_identifier":{"issn":["2041-1723"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"corr_author":"1","publication":"Nature Communications","article_number":"4826","title":"A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory","day":"16","ddc":["570"],"citation":{"short":"Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas, Nature Communications 13 (2022).","ista":"Ben Simon Y, Käfer K, Velicky P, Csicsvari JL, Danzl JG, Jonas PM. 2022. A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory. Nature Communications. 13, 4826.","mla":"Ben Simon, Yoav, et al. “A Direct Excitatory Projection from Entorhinal Layer 6b Neurons to the Hippocampus Contributes to Spatial Coding and Memory.” <i>Nature Communications</i>, vol. 13, 4826, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41467-022-32559-8\">10.1038/s41467-022-32559-8</a>.","apa":"Ben Simon, Y., Käfer, K., Velicky, P., Csicsvari, J. L., Danzl, J. G., &#38; Jonas, P. M. (2022). A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-022-32559-8\">https://doi.org/10.1038/s41467-022-32559-8</a>","ama":"Ben Simon Y, Käfer K, Velicky P, Csicsvari JL, Danzl JG, Jonas PM. A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory. <i>Nature Communications</i>. 2022;13. doi:<a href=\"https://doi.org/10.1038/s41467-022-32559-8\">10.1038/s41467-022-32559-8</a>","ieee":"Y. Ben Simon, K. Käfer, P. Velicky, J. L. Csicsvari, J. G. Danzl, and P. M. Jonas, “A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022.","chicago":"Ben Simon, Yoav, Karola Käfer, Philipp Velicky, Jozsef L Csicsvari, Johann G Danzl, and Peter M Jonas. “A Direct Excitatory Projection from Entorhinal Layer 6b Neurons to the Hippocampus Contributes to Spatial Coding and Memory.” <i>Nature Communications</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41467-022-32559-8\">https://doi.org/10.1038/s41467-022-32559-8</a>."},"intvolume":"        13","doi":"10.1038/s41467-022-32559-8","author":[{"first_name":"Yoav","full_name":"Ben Simon, Yoav","last_name":"Ben Simon","id":"43DF3136-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Karola","full_name":"Käfer, Karola","id":"2DAA49AA-F248-11E8-B48F-1D18A9856A87","last_name":"Käfer"},{"full_name":"Velicky, Philipp","first_name":"Philipp","last_name":"Velicky","id":"39BDC62C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2340-7431"},{"first_name":"Jozsef L","full_name":"Csicsvari, Jozsef L","orcid":"0000-0002-5193-4036","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","last_name":"Csicsvari"},{"last_name":"Danzl","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","first_name":"Johann G"},{"full_name":"Jonas, Peter M","first_name":"Peter M","last_name":"Jonas","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804"}],"publisher":"Springer Nature","has_accepted_license":"1","department":[{"_id":"JoCs"},{"_id":"PeJo"},{"_id":"JoDa"}],"file_date_updated":"2022-08-26T11:51:40Z","article_processing_charge":"No","abstract":[{"lang":"eng","text":"The mammalian hippocampal formation (HF) plays a key role in several higher brain functions, such as spatial coding, learning and memory. Its simple circuit architecture is often viewed as a trisynaptic loop, processing input originating from the superficial layers of the entorhinal cortex (EC) and sending it back to its deeper layers. Here, we show that excitatory neurons in layer 6b of the mouse EC project to all sub-regions comprising the HF and receive input from the CA1, thalamus and claustrum. Furthermore, their output is characterized by unique slow-decaying excitatory postsynaptic currents capable of driving plateau-like potentials in their postsynaptic targets. Optogenetic inhibition of the EC-6b pathway affects spatial coding in CA1 pyramidal neurons, while cell ablation impairs not only acquisition of new spatial memories, but also degradation of previously acquired ones. Our results provide evidence of a functional role for cortical layer 6b neurons in the adult brain."}],"date_updated":"2025-06-12T06:10:44Z","publication_status":"published","month":"08","ec_funded":1,"project":[{"_id":"25B7EB9E-B435-11E9-9278-68D0E5697425","name":"Biophysics and circuit function of a giant cortical glutamatergic synapse","grant_number":"692692","call_identifier":"H2020"},{"call_identifier":"FWF","grant_number":"I03600","name":"Optical control of synaptic function via adhesion molecules","_id":"265CB4D0-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","_id":"25C5A090-B435-11E9-9278-68D0E5697425","grant_number":"Z00312","name":"Synaptic communication in neuronal microcircuits"}],"external_id":{"pmid":["35974109"],"isi":["000841396400008"]},"quality_controlled":"1","status":"public","date_created":"2022-08-24T08:25:50Z"},{"publication_status":"published","date_updated":"2025-07-08T09:01:02Z","month":"11","quality_controlled":"1","external_id":{"pmid":["36379956"],"isi":["000884426700001"]},"date_created":"2023-01-12T12:02:41Z","status":"public","citation":{"ista":"Huang J, Zhao L, Malik S, Gentile BR, Xiong V, Arazi T, Owen HA, Friml J, Zhao D. 2022. Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis. Nature Communications. 13, 6960.","short":"J. Huang, L. Zhao, S. Malik, B.R. Gentile, V. Xiong, T. Arazi, H.A. Owen, J. Friml, D. Zhao, Nature Communications 13 (2022).","mla":"Huang, Jian, et al. “Specification of Female Germline by MicroRNA Orchestrated Auxin Signaling in Arabidopsis.” <i>Nature Communications</i>, vol. 13, 6960, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41467-022-34723-6\">10.1038/s41467-022-34723-6</a>.","chicago":"Huang, Jian, Lei Zhao, Shikha Malik, Benjamin R. Gentile, Va Xiong, Tzahi Arazi, Heather A. Owen, Jiří Friml, and Dazhong Zhao. “Specification of Female Germline by MicroRNA Orchestrated Auxin Signaling in Arabidopsis.” <i>Nature Communications</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41467-022-34723-6\">https://doi.org/10.1038/s41467-022-34723-6</a>.","ama":"Huang J, Zhao L, Malik S, et al. Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis. <i>Nature Communications</i>. 2022;13. doi:<a href=\"https://doi.org/10.1038/s41467-022-34723-6\">10.1038/s41467-022-34723-6</a>","apa":"Huang, J., Zhao, L., Malik, S., Gentile, B. R., Xiong, V., Arazi, T., … Zhao, D. (2022). Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-022-34723-6\">https://doi.org/10.1038/s41467-022-34723-6</a>","ieee":"J. Huang <i>et al.</i>, “Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022."},"ddc":["580"],"author":[{"first_name":"Jian","full_name":"Huang, Jian","last_name":"Huang"},{"first_name":"Lei","full_name":"Zhao, Lei","last_name":"Zhao"},{"last_name":"Malik","first_name":"Shikha","full_name":"Malik, Shikha"},{"full_name":"Gentile, Benjamin R.","first_name":"Benjamin R.","last_name":"Gentile"},{"full_name":"Xiong, Va","first_name":"Va","last_name":"Xiong"},{"first_name":"Tzahi","full_name":"Arazi, Tzahi","last_name":"Arazi"},{"full_name":"Owen, Heather A.","first_name":"Heather A.","last_name":"Owen"},{"full_name":"Friml, Jiří","first_name":"Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596"},{"full_name":"Zhao, Dazhong","first_name":"Dazhong","last_name":"Zhao"}],"intvolume":"        13","doi":"10.1038/s41467-022-34723-6","has_accepted_license":"1","publisher":"Springer Nature","abstract":[{"lang":"eng","text":"Germline determination is essential for species survival and evolution in multicellular organisms. In most flowering plants, formation of the female germline is initiated with specification of one megaspore mother cell (MMC) in each ovule; however, the molecular mechanism underlying this key event remains unclear. Here we report that spatially restricted auxin signaling promotes MMC fate in Arabidopsis. Our results show that the microRNA160 (miR160) targeted gene ARF17 (AUXIN RESPONSE FACTOR17) is required for promoting MMC specification by genetically interacting with the SPL/NZZ (SPOROCYTELESS/NOZZLE) gene. Alterations of auxin signaling cause formation of supernumerary MMCs in an ARF17- and SPL/NZZ-dependent manner. Furthermore, miR160 and ARF17 are indispensable for attaining a normal auxin maximum at the ovule apex via modulating the expression domain of PIN1 (PIN-FORMED1) auxin transporter. Our findings elucidate the mechanism by which auxin signaling promotes the acquisition of female germline cell fate in plants."}],"article_processing_charge":"No","department":[{"_id":"JiFr"}],"file_date_updated":"2023-01-23T11:17:33Z","oa":1,"isi":1,"fulldoi":"https://doi.org/10.1038/s41467-022-34723-6","date_published":"2022-11-15T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"scopus_import":"1","publication_identifier":{"eissn":["2041-1723"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Nature Communications","day":"15","article_number":"6960","title":"Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis","acknowledgement":"We thank A. Cheung,W. Lukowitz, V.Walbot, D.Weijers, and R. Yadegari for critically reading the manuscript; E. Xiong and G. Zhang for preparing some experiments, T. Schuck, J. Gonnering, and P. Engevold for plant care, the Arabidopsis Biological Resource Center (ABRC) for ARF10,ARF16, ARF17, EMS1,MIR160a BAC clones and cDNAs, the SALK_090804 seed, T. Nakagawa for pGBW vectors, Y. Zhao for the YUC1 cDNA, Q. Chen for the pHEE401E vector, R. Yadegari for pAT5G01860::n1GFP, pAT5G45980:n1GFP, pAT5G50490::n1GFP, pAT5G56200:n1GFP vectors, and D.Weijers for the pGreenII KAN SV40-3×GFP and R2D2 vectors, W. Yang for the splmutant, Y. Qin for the pKNU::KNU-VENUS vector and seed, G. Tang for the STTM160/160-48 vector, and L. Colombo for pPIN1::PIN1-GFP spl and pin1-5 seeds. This work was supported by the US National Science Foundation (NSF)-Israel Binational Science Foundation (BSF) research grant to D.Z. (IOS-1322796) and T.A. (2012756). D.Z. also\r\ngratefully acknowledges supports of the Shaw Scientist Award from the Greater Milwaukee Foundation, USDA National Institute of Food and Agriculture (NIFA, 2022-67013-36294), the UWM Discovery and Innovation Grant, the Bradley Catalyst Award from the UWM Research\r\nFoundation, and WiSys and UW System Applied Research Funding Programs.","pmid":1,"language":[{"iso":"eng"}],"type":"journal_article","file":[{"success":1,"date_created":"2023-01-23T11:17:33Z","file_id":"12346","date_updated":"2023-01-23T11:17:33Z","file_name":"2022_NatureCommunications_Huang.pdf","relation":"main_file","creator":"dernst","file_size":3375249,"content_type":"application/pdf","checksum":"233922a7b9507d9d48591e6799e4526e","access_level":"open_access"}],"volume":13,"article_type":"original","keyword":["General Physics and Astronomy","General Biochemistry","Genetics and Molecular Biology","General Chemistry","Multidisciplinary"],"_id":"12130","oa_version":"Published Version","year":"2022"},{"publication_identifier":{"issn":["0022-1120"],"eissn":["1469-7645"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","fulldoi":"https://doi.org/10.1017/jfm.2022.828","date_published":"2022-11-07T00:00:00Z","oa":1,"isi":1,"article_number":"A21","title":"Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow","day":"07","publication":"Journal of Fluid Mechanics","volume":951,"type":"journal_article","language":[{"iso":"eng"}],"acknowledgement":"K.D.’s research was supported by an Australian Research Council Discovery Early Career\r\nResearcher Award (DE170100171). B.W., R.A., F.M. and A.M. research was supported by the Spanish Ministerio de Economía y Competitivdad (grant numbers FIS2016-77849-R and FIS2017-85794-P) and Ministerio de Ciencia e Innovación (grant number PID2020-114043GB-I00) and the Generalitat de Catalunya (grant 2017-SGR-785). B.W.’s research was also supported by the Chinese Scholarship Council (grant CSC no. 201806440152).","oa_version":"Preprint","_id":"12137","arxiv":1,"year":"2022","keyword":["Mechanical Engineering","Mechanics of Materials","Condensed Matter Physics","Applied Mathematics"],"article_type":"original","month":"11","date_updated":"2023-08-04T08:54:16Z","publication_status":"published","status":"public","date_created":"2023-01-12T12:04:17Z","external_id":{"arxiv":["2207.12990"],"isi":["000879446900001"]},"quality_controlled":"1","intvolume":"       951","doi":"10.1017/jfm.2022.828","author":[{"full_name":"Wang, B.","first_name":"B.","last_name":"Wang"},{"first_name":"Roger","full_name":"Ayats López, Roger","last_name":"Ayats López","orcid":"0000-0001-6572-0621","id":"ab77522d-073b-11ed-8aff-e71b39258362"},{"full_name":"Deguchi, K.","first_name":"K.","last_name":"Deguchi"},{"full_name":"Mellibovsky, F.","first_name":"F.","last_name":"Mellibovsky"},{"last_name":"Meseguer","first_name":"A.","full_name":"Meseguer, A."}],"citation":{"ista":"Wang B, Ayats López R, Deguchi K, Mellibovsky F, Meseguer A. 2022. Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow. Journal of Fluid Mechanics. 951, A21.","short":"B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, A. Meseguer, Journal of Fluid Mechanics 951 (2022).","mla":"Wang, B., et al. “Self-Sustainment of Coherent Structures in Counter-Rotating Taylor–Couette Flow.” <i>Journal of Fluid Mechanics</i>, vol. 951, A21, Cambridge University Press, 2022, doi:<a href=\"https://doi.org/10.1017/jfm.2022.828\">10.1017/jfm.2022.828</a>.","chicago":"Wang, B., Roger Ayats López, K. Deguchi, F. Mellibovsky, and A. Meseguer. “Self-Sustainment of Coherent Structures in Counter-Rotating Taylor–Couette Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2022. <a href=\"https://doi.org/10.1017/jfm.2022.828\">https://doi.org/10.1017/jfm.2022.828</a>.","ama":"Wang B, Ayats López R, Deguchi K, Mellibovsky F, Meseguer A. Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow. <i>Journal of Fluid Mechanics</i>. 2022;951. doi:<a href=\"https://doi.org/10.1017/jfm.2022.828\">10.1017/jfm.2022.828</a>","apa":"Wang, B., Ayats López, R., Deguchi, K., Mellibovsky, F., &#38; Meseguer, A. (2022). Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2022.828\">https://doi.org/10.1017/jfm.2022.828</a>","ieee":"B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, and A. Meseguer, “Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow,” <i>Journal of Fluid Mechanics</i>, vol. 951. Cambridge University Press, 2022."},"department":[{"_id":"BjHo"}],"main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2207.12990"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"We investigate the local self-sustained process underlying spiral turbulence in counter-rotating Taylor–Couette flow using a periodic annular domain, shaped as a parallelogram, two of whose sides are aligned with the cylindrical helix described by the spiral pattern. The primary focus of the study is placed on the emergence of drifting–rotating waves (DRW) that capture, in a relatively small domain, the main features of coherent structures typically observed in developed turbulence. The transitional dynamics of the subcritical region, far below the first instability of the laminar circular Couette flow, is determined by the upper and lower branches of DRW solutions originated at saddle-node bifurcations. The mechanism whereby these solutions self-sustain, and the chaotic dynamics they induce, are conspicuously reminiscent of other subcritical shear flows. Remarkably, the flow properties of DRW persist even as the Reynolds number is increased beyond the linear stability threshold of the base flow. Simulations in a narrow parallelogram domain stretched in the azimuthal direction to revolve around the apparatus a full turn confirm that self-sustained vortices eventually concentrate into a localised pattern. The resulting statistical steady state satisfactorily reproduces qualitatively, and to a certain degree also quantitatively, the topology and properties of spiral turbulence as calculated in a large periodic domain of sufficient aspect ratio that is representative of the real system."}],"publisher":"Cambridge University Press"},{"language":[{"iso":"eng"}],"acknowledgement":"We are grateful to the anonymous referees for their careful reading and valuable remarks and\r\ncomments which helped to improve the paper significantly. We gratefully acknowledge support from the European Research Council (ERC) through the Advanced Grant “SPERIG” (#885707).","volume":27,"type":"journal_article","keyword":["Mechanical Engineering","Applied Mathematics","Mathematical Physics","Modeling and Simulation","Statistical and Nonlinear Physics","Mathematics (miscellaneous)"],"article_type":"original","_id":"12145","oa_version":"Preprint","year":"2022","arxiv":1,"fulldoi":"https://doi.org/10.1134/S1560354722050021","date_published":"2022-10-03T00:00:00Z","oa":1,"isi":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_identifier":{"eissn":["1468-4845"],"issn":["1560-3547"]},"scopus_import":"1","corr_author":"1","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1134/s1560354722060107"}]},"page":"525-537","publication":"Regular and Chaotic Dynamics","title":"On some invariants of Birkhoff billiards under conjugacy","day":"03","citation":{"ista":"Koudjinan E, Kaloshin V. 2022. On some invariants of Birkhoff billiards under conjugacy. Regular and Chaotic Dynamics. 27(6), 525–537.","short":"E. Koudjinan, V. Kaloshin, Regular and Chaotic Dynamics 27 (2022) 525–537.","mla":"Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff Billiards under Conjugacy.” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6, Springer Nature, 2022, pp. 525–37, doi:<a href=\"https://doi.org/10.1134/S1560354722050021\">10.1134/S1560354722050021</a>.","ieee":"E. Koudjinan and V. Kaloshin, “On some invariants of Birkhoff billiards under conjugacy,” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6. Springer Nature, pp. 525–537, 2022.","apa":"Koudjinan, E., &#38; Kaloshin, V. (2022). On some invariants of Birkhoff billiards under conjugacy. <i>Regular and Chaotic Dynamics</i>. Springer Nature. <a href=\"https://doi.org/10.1134/S1560354722050021\">https://doi.org/10.1134/S1560354722050021</a>","ama":"Koudjinan E, Kaloshin V. On some invariants of Birkhoff billiards under conjugacy. <i>Regular and Chaotic Dynamics</i>. 2022;27(6):525-537. doi:<a href=\"https://doi.org/10.1134/S1560354722050021\">10.1134/S1560354722050021</a>","chicago":"Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff Billiards under Conjugacy.” <i>Regular and Chaotic Dynamics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1134/S1560354722050021\">https://doi.org/10.1134/S1560354722050021</a>."},"intvolume":"        27","doi":"10.1134/S1560354722050021","author":[{"full_name":"Koudjinan, Edmond","first_name":"Edmond","id":"52DF3E68-AEFA-11EA-95A4-124A3DDC885E","orcid":"0000-0003-2640-4049","last_name":"Koudjinan"},{"orcid":"0000-0002-6051-2628","id":"FE553552-CDE8-11E9-B324-C0EBE5697425","last_name":"Kaloshin","first_name":"Vadim","full_name":"Kaloshin, Vadim"}],"publisher":"Springer Nature","department":[{"_id":"VaKa"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"In the class of strictly convex smooth boundaries each of which has no strip around its boundary foliated by invariant curves, we prove that the Taylor coefficients of the “normalized” Mather’s β-function are invariant under C∞-conjugacies. In contrast, we prove that any two elliptic billiard maps are C0-conjugate near their respective boundaries, and C∞-conjugate, near the boundary and away from a line passing through the center of the underlying ellipse. We also prove that, if the billiard maps corresponding to two ellipses are topologically conjugate, then the two ellipses are similar."}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2105.14640","open_access":"1"}],"issue":"6","date_updated":"2025-04-14T07:53:45Z","publication_status":"published","month":"10","ec_funded":1,"project":[{"_id":"9B8B92DE-BA93-11EA-9121-9846C619BF3A","name":"Spectral rigidity and integrability for billiards and geodesic flows","grant_number":"885707","call_identifier":"H2020"}],"external_id":{"arxiv":["2105.14640"],"isi":["000865267300002"]},"quality_controlled":"1","status":"public","date_created":"2023-01-12T12:06:49Z"},{"keyword":["Condensed Matter Physics","Fluid Flow and Transfer Processes","Mechanics of Materials","Computational Mechanics","Mechanical Engineering"],"article_type":"original","_id":"12146","oa_version":"Submitted Version","year":"2022","language":[{"iso":"eng"}],"acknowledgement":"This work was supported by the Spanish MINECO under Grant Nos. FIS2017-85794-P and PRX18/00179, the Spanish MICINN through Grant No. PID2020-114043GB-I00, and the\r\nGeneralitat de Catalunya under Grant No. 2017-SGR-785. B.W.’s research was also supported by the Chinese Scholarship Council through Grant CSC No. 201806440152.","volume":34,"type":"journal_article","publication":"Physics of Fluids","article_number":"114111","title":"Phase-locking flows between orthogonally stretching parallel plates","day":"04","fulldoi":"https://doi.org/10.1063/5.0124152","date_published":"2022-11-04T00:00:00Z","oa":1,"isi":1,"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1089-7666"],"issn":["1070-6631"]},"publisher":"AIP Publishing","department":[{"_id":"BjHo"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"In this paper, we explore the stability and dynamical relevance of a wide variety of steady, time-periodic, quasiperiodic, and chaotic flows arising between orthogonally stretching parallel plates. We first explore the stability of all the steady flow solution families formerly identified by Ayats et al. [“Flows between orthogonally stretching parallel plates,” Phys. Fluids 33, 024103 (2021)], concluding that only the one that originates from the Stokesian approximation is actually stable. When both plates are shrinking at identical or nearly the same deceleration rates, this Stokesian flow exhibits a Hopf bifurcation that leads to stable time-periodic regimes. The resulting time-periodic orbits or flows are tracked for different Reynolds numbers and stretching rates while monitoring their Floquet exponents to identify secondary instabilities. It is found that these time-periodic flows also exhibit Neimark–Sacker bifurcations, generating stable quasiperiodic flows (tori) that may sometimes give rise to chaotic dynamics through a Ruelle–Takens–Newhouse scenario. However, chaotic dynamics is unusually observed, as the quasiperiodic flows generally become phase-locked through a resonance mechanism before a strange attractor may arise, thus restoring the time-periodicity of the flow. In this work, we have identified and tracked four different resonance regions, also known as Arnold tongues or horns. In particular, the 1 : 4 strong resonance region is explored in great detail, where the identified scenarios are in very good agreement with normal form theory. "}],"main_file_link":[{"url":"https://upcommons.upc.edu/handle/2117/385635","open_access":"1"}],"citation":{"chicago":"Wang, B., Roger Ayats López, A. Meseguer, and F. Marques. “Phase-Locking Flows between Orthogonally Stretching Parallel Plates.” <i>Physics of Fluids</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0124152\">https://doi.org/10.1063/5.0124152</a>.","ieee":"B. Wang, R. Ayats López, A. Meseguer, and F. Marques, “Phase-locking flows between orthogonally stretching parallel plates,” <i>Physics of Fluids</i>, vol. 34, no. 11. AIP Publishing, 2022.","ama":"Wang B, Ayats López R, Meseguer A, Marques F. Phase-locking flows between orthogonally stretching parallel plates. <i>Physics of Fluids</i>. 2022;34(11). doi:<a href=\"https://doi.org/10.1063/5.0124152\">10.1063/5.0124152</a>","apa":"Wang, B., Ayats López, R., Meseguer, A., &#38; Marques, F. (2022). Phase-locking flows between orthogonally stretching parallel plates. <i>Physics of Fluids</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0124152\">https://doi.org/10.1063/5.0124152</a>","mla":"Wang, B., et al. “Phase-Locking Flows between Orthogonally Stretching Parallel Plates.” <i>Physics of Fluids</i>, vol. 34, no. 11, 114111, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0124152\">10.1063/5.0124152</a>.","ista":"Wang B, Ayats López R, Meseguer A, Marques F. 2022. Phase-locking flows between orthogonally stretching parallel plates. Physics of Fluids. 34(11), 114111.","short":"B. Wang, R. Ayats López, A. Meseguer, F. Marques, Physics of Fluids 34 (2022)."},"intvolume":"        34","doi":"10.1063/5.0124152","author":[{"first_name":"B.","full_name":"Wang, B.","last_name":"Wang"},{"id":"ab77522d-073b-11ed-8aff-e71b39258362","orcid":"0000-0001-6572-0621","last_name":"Ayats López","full_name":"Ayats López, Roger","first_name":"Roger"},{"last_name":"Meseguer","first_name":"A.","full_name":"Meseguer, A."},{"last_name":"Marques","first_name":"F.","full_name":"Marques, F."}],"external_id":{"isi":["000880665300024"]},"quality_controlled":"1","status":"public","date_created":"2023-01-12T12:06:58Z","issue":"11","date_updated":"2023-10-03T11:07:58Z","publication_status":"published","month":"11"},{"status":"public","date_created":"2023-01-12T12:07:30Z","external_id":{"isi":["000873719200001"]},"quality_controlled":"1","ec_funded":1,"month":"10","project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","call_identifier":"H2020"}],"date_updated":"2025-04-14T07:57:18Z","publication_status":"published","file_date_updated":"2023-01-24T10:02:40Z","department":[{"_id":"LaEr"}],"article_processing_charge":"No","abstract":[{"text":"We prove a general local law for Wigner matrices that optimally handles observables of arbitrary rank and thus unifies the well-known averaged and isotropic local laws. As an application, we prove a central limit theorem in quantum unique ergodicity (QUE): that is, we show that the quadratic forms of a general deterministic matrix A on the bulk eigenvectors of a Wigner matrix have approximately Gaussian fluctuation. For the bulk spectrum, we thus generalise our previous result [17] as valid for test matrices A of large rank as well as the result of Benigni and Lopatto [7] as valid for specific small-rank observables.","lang":"eng"}],"publisher":"Cambridge University Press","has_accepted_license":"1","doi":"10.1017/fms.2022.86","intvolume":"        10","author":[{"last_name":"Cipolloni","orcid":"0000-0002-4901-7992","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","first_name":"Giorgio","full_name":"Cipolloni, Giorgio"},{"full_name":"Erdös, László","first_name":"László","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603"},{"full_name":"Schröder, Dominik J","first_name":"Dominik J","last_name":"Schröder","id":"408ED176-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2904-1856"}],"citation":{"short":"G. Cipolloni, L. Erdös, D.J. Schröder, Forum of Mathematics, Sigma 10 (2022).","ista":"Cipolloni G, Erdös L, Schröder DJ. 2022. Rank-uniform local law for Wigner matrices. Forum of Mathematics, Sigma. 10, e96.","ama":"Cipolloni G, Erdös L, Schröder DJ. Rank-uniform local law for Wigner matrices. <i>Forum of Mathematics, Sigma</i>. 2022;10. doi:<a href=\"https://doi.org/10.1017/fms.2022.86\">10.1017/fms.2022.86</a>","apa":"Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2022). Rank-uniform local law for Wigner matrices. <i>Forum of Mathematics, Sigma</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fms.2022.86\">https://doi.org/10.1017/fms.2022.86</a>","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Rank-uniform local law for Wigner matrices,” <i>Forum of Mathematics, Sigma</i>, vol. 10. Cambridge University Press, 2022.","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Rank-Uniform Local Law for Wigner Matrices.” <i>Forum of Mathematics, Sigma</i>. Cambridge University Press, 2022. <a href=\"https://doi.org/10.1017/fms.2022.86\">https://doi.org/10.1017/fms.2022.86</a>.","mla":"Cipolloni, Giorgio, et al. “Rank-Uniform Local Law for Wigner Matrices.” <i>Forum of Mathematics, Sigma</i>, vol. 10, e96, Cambridge University Press, 2022, doi:<a href=\"https://doi.org/10.1017/fms.2022.86\">10.1017/fms.2022.86</a>."},"ddc":["510"],"article_number":"e96","title":"Rank-uniform local law for Wigner matrices","day":"27","publication":"Forum of Mathematics, Sigma","publication_identifier":{"issn":["2050-5094"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","corr_author":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_published":"2022-10-27T00:00:00Z","fulldoi":"https://doi.org/10.1017/fms.2022.86","isi":1,"oa":1,"year":"2022","_id":"12148","oa_version":"Published Version","keyword":["Computational Mathematics","Discrete Mathematics and Combinatorics","Geometry and Topology","Mathematical Physics","Statistics and Probability","Algebra and Number Theory","Theoretical Computer Science","Analysis"],"article_type":"original","volume":10,"file":[{"date_created":"2023-01-24T10:02:40Z","success":1,"creator":"dernst","file_size":817089,"content_type":"application/pdf","checksum":"94a049aeb1eea5497aa097712a73c400","access_level":"open_access","file_id":"12356","date_updated":"2023-01-24T10:02:40Z","file_name":"2022_ForumMath_Cipolloni.pdf","relation":"main_file"}],"type":"journal_article","language":[{"iso":"eng"}],"acknowledgement":"L.E. acknowledges support by ERC Advanced Grant ‘RMTBeyond’ No. 101020331. D.S. acknowledges the support of Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation."},{"date_published":"2022-10-17T00:00:00Z","fulldoi":"https://doi.org/10.3390/sym14102182","isi":1,"oa":1,"publication_identifier":{"issn":["2073-8994"]},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"publication":"Symmetry","article_number":"2182","title":"First and second sound in two-dimensional bosonic and fermionic superfluids","day":"17","language":[{"iso":"eng"}],"acknowledgement":"This research is partially supported by University of Padova, BIRD grant “Ultracold atoms\r\nin curved geometries”. KF is supported by Fondazione CARIPARO with a PhD fellowship. AT is\r\npartially supported by French National Research Agency ANR Grant Droplets N. ANR-19-CE30-0003-02. LS thanks Herwig Ott and Sandro Wimberger for their kind invitation to the\r\nInternational Workshop “Quantum Transport with ultracold atoms” (2022).","volume":14,"file":[{"success":1,"date_created":"2023-01-24T10:56:12Z","file_name":"2022_Symmetry_Salsnich.pdf","relation":"main_file","date_updated":"2023-01-24T10:56:12Z","file_id":"12361","access_level":"open_access","checksum":"9b6bd0e484834dd76d7b26e3c5fba8bd","content_type":"application/pdf","file_size":843723,"creator":"dernst"}],"type":"journal_article","keyword":["Physics and Astronomy (miscellaneous)","General Mathematics","Chemistry (miscellaneous)","Computer Science (miscellaneous)"],"article_type":"original","year":"2022","_id":"12154","oa_version":"Published Version","date_updated":"2023-08-09T10:13:17Z","issue":"10","publication_status":"published","month":"10","external_id":{"isi":["000875039200001"]},"quality_controlled":"1","status":"public","date_created":"2023-01-12T12:08:31Z","citation":{"apa":"Salasnich, L., Cappellaro, A., Furutani, K., Tononi, A., &#38; Bighin, G. (2022). First and second sound in two-dimensional bosonic and fermionic superfluids. <i>Symmetry</i>. MDPI. <a href=\"https://doi.org/10.3390/sym14102182\">https://doi.org/10.3390/sym14102182</a>","ama":"Salasnich L, Cappellaro A, Furutani K, Tononi A, Bighin G. First and second sound in two-dimensional bosonic and fermionic superfluids. <i>Symmetry</i>. 2022;14(10). doi:<a href=\"https://doi.org/10.3390/sym14102182\">10.3390/sym14102182</a>","ieee":"L. Salasnich, A. Cappellaro, K. Furutani, A. Tononi, and G. Bighin, “First and second sound in two-dimensional bosonic and fermionic superfluids,” <i>Symmetry</i>, vol. 14, no. 10. MDPI, 2022.","chicago":"Salasnich, Luca, Alberto Cappellaro, Koichiro Furutani, Andrea Tononi, and Giacomo Bighin. “First and Second Sound in Two-Dimensional Bosonic and Fermionic Superfluids.” <i>Symmetry</i>. MDPI, 2022. <a href=\"https://doi.org/10.3390/sym14102182\">https://doi.org/10.3390/sym14102182</a>.","mla":"Salasnich, Luca, et al. “First and Second Sound in Two-Dimensional Bosonic and Fermionic Superfluids.” <i>Symmetry</i>, vol. 14, no. 10, 2182, MDPI, 2022, doi:<a href=\"https://doi.org/10.3390/sym14102182\">10.3390/sym14102182</a>.","ista":"Salasnich L, Cappellaro A, Furutani K, Tononi A, Bighin G. 2022. First and second sound in two-dimensional bosonic and fermionic superfluids. Symmetry. 14(10), 2182.","short":"L. Salasnich, A. Cappellaro, K. Furutani, A. Tononi, G. Bighin, Symmetry 14 (2022)."},"ddc":["530"],"doi":"10.3390/sym14102182","intvolume":"        14","author":[{"full_name":"Salasnich, Luca","first_name":"Luca","last_name":"Salasnich"},{"first_name":"Alberto","full_name":"Cappellaro, Alberto","last_name":"Cappellaro","orcid":"0000-0001-6110-2359","id":"9d13b3cb-30a2-11eb-80dc-f772505e8660"},{"full_name":"Furutani, Koichiro","first_name":"Koichiro","last_name":"Furutani"},{"first_name":"Andrea","full_name":"Tononi, Andrea","last_name":"Tononi"},{"id":"4CA96FD4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8823-9777","last_name":"Bighin","full_name":"Bighin, Giacomo","first_name":"Giacomo"}],"has_accepted_license":"1","publisher":"MDPI","department":[{"_id":"MiLe"}],"file_date_updated":"2023-01-24T10:56:12Z","article_processing_charge":"Yes","abstract":[{"lang":"eng","text":"We review our theoretical results of the sound propagation in two-dimensional (2D) systems of ultracold fermionic and bosonic atoms. In the superfluid phase, characterized by the spontaneous symmetry breaking of the U(1) symmetry, there is the coexistence of first and second sound. In the case of weakly-interacting repulsive bosons, we model the recent measurements of the sound velocities of 39K atoms in 2D obtained in the weakly-interacting regime and around the Berezinskii–Kosterlitz–Thouless (BKT) superfluid-to-normal transition temperature. In particular, we perform a quite accurate computation of the superfluid density and show that it is reasonably consistent with the experimental results. For superfluid attractive fermions, we calculate the first and second sound velocities across the whole BCS-BEC crossover. In the low-temperature regime, we reproduce the recent measurements of first-sound speed with 6Li atoms. We also predict that there is mixing between sound modes only in the finite-temperature BEC regime."}]},{"doi":"10.1038/s41467-022-33931-4","intvolume":"        13","author":[{"last_name":"Prehal","first_name":"Christian","full_name":"Prehal, Christian"},{"last_name":"von Mentlen","full_name":"von Mentlen, Jean-Marc","first_name":"Jean-Marc"},{"full_name":"Drvarič Talian, Sara","first_name":"Sara","last_name":"Drvarič Talian"},{"last_name":"Vizintin","full_name":"Vizintin, Alen","first_name":"Alen"},{"last_name":"Dominko","first_name":"Robert","full_name":"Dominko, Robert"},{"last_name":"Amenitsch","full_name":"Amenitsch, Heinz","first_name":"Heinz"},{"last_name":"Porcar","full_name":"Porcar, Lionel","first_name":"Lionel"},{"first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","orcid":"0000-0003-2902-5319","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"last_name":"Wood","full_name":"Wood, Vanessa","first_name":"Vanessa"}],"citation":{"short":"C. Prehal, J.-M. von Mentlen, S. Drvarič Talian, A. Vizintin, R. Dominko, H. Amenitsch, L. Porcar, S.A. Freunberger, V. Wood, Nature Communications 13 (2022).","ista":"Prehal C, von Mentlen J-M, Drvarič Talian S, Vizintin A, Dominko R, Amenitsch H, Porcar L, Freunberger SA, Wood V. 2022. On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering. Nature Communications. 13, 6326.","mla":"Prehal, Christian, et al. “On the Nanoscale Structural Evolution of Solid Discharge Products in Lithium-Sulfur Batteries Using Operando Scattering.” <i>Nature Communications</i>, vol. 13, 6326, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41467-022-33931-4\">10.1038/s41467-022-33931-4</a>.","chicago":"Prehal, Christian, Jean-Marc von Mentlen, Sara Drvarič Talian, Alen Vizintin, Robert Dominko, Heinz Amenitsch, Lionel Porcar, Stefan Alexander Freunberger, and Vanessa Wood. “On the Nanoscale Structural Evolution of Solid Discharge Products in Lithium-Sulfur Batteries Using Operando Scattering.” <i>Nature Communications</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41467-022-33931-4\">https://doi.org/10.1038/s41467-022-33931-4</a>.","ieee":"C. Prehal <i>et al.</i>, “On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022.","apa":"Prehal, C., von Mentlen, J.-M., Drvarič Talian, S., Vizintin, A., Dominko, R., Amenitsch, H., … Wood, V. (2022). On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-022-33931-4\">https://doi.org/10.1038/s41467-022-33931-4</a>","ama":"Prehal C, von Mentlen J-M, Drvarič Talian S, et al. On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering. <i>Nature Communications</i>. 2022;13. doi:<a href=\"https://doi.org/10.1038/s41467-022-33931-4\">10.1038/s41467-022-33931-4</a>"},"ddc":["540"],"department":[{"_id":"StFr"}],"file_date_updated":"2023-01-27T07:19:11Z","article_processing_charge":"No","abstract":[{"text":"The inadequate understanding of the mechanisms that reversibly convert molecular sulfur (S) into lithium sulfide (Li<jats:sub>2</jats:sub>S) via soluble polysulfides (PSs) formation impedes the development of high-performance lithium-sulfur (Li-S) batteries with non-aqueous electrolyte solutions. Here, we use operando small and wide angle X-ray scattering and operando small angle neutron scattering (SANS) measurements to track the nucleation, growth and dissolution of solid deposits from atomic to sub-micron scales during real-time Li-S cell operation. In particular, stochastic modelling based on the SANS data allows quantifying the nanoscale phase evolution during battery cycling. We show that next to nano-crystalline Li<jats:sub>2</jats:sub>S the deposit comprises solid short-chain PSs particles. The analysis of the experimental data suggests that initially, Li<jats:sub>2</jats:sub>S<jats:sub>2</jats:sub> precipitates from the solution and then is partially converted via solid-state electroreduction to Li<jats:sub>2</jats:sub>S. We further demonstrate that mass transport, rather than electron transport through a thin passivating film, limits the discharge capacity and rate performance in Li-S cells.","lang":"eng"}],"has_accepted_license":"1","publisher":"Springer Nature","month":"10","date_updated":"2024-10-09T21:03:47Z","publication_status":"published","status":"public","date_created":"2023-01-16T09:45:09Z","external_id":{"pmid":["36280671"],"isi":["000871563700006"]},"quality_controlled":"1","volume":13,"file":[{"date_created":"2023-01-27T07:19:11Z","success":1,"access_level":"open_access","checksum":"5034336dbf0f860030ef745c08df9e0e","content_type":"application/pdf","file_size":4216931,"creator":"dernst","relation":"main_file","file_name":"2022_NatureCommunications_Prehal.pdf","date_updated":"2023-01-27T07:19:11Z","file_id":"12411"}],"type":"journal_article","language":[{"iso":"eng"}],"pmid":1,"acknowledgement":"This project has received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant NanoEvolution, grant agreement No 894042. The authors acknowledge the CERIC-ERIC Consortium for the access to the Austrian SAXS beamline and TU Graz for support through the Lead Project LP-03.\r\nLikewise, the use of SOMAPP Lab, a core facility supported by the Austrian Federal Ministry of Education, Science and Research, the Graz University of Technology, the University of Graz, and Anton Paar GmbH is acknowledged. In addition, the authors acknowledge access to the D-22SANS beamline at the ILL neutron source. Electron microscopy measurements were performed at the Scientific Scenter for Optical and Electron Microscopy (ScopeM) of the Swiss Federal Institute of Technology. C.P. and J.M.M. thank A. Senol for her support with the SANS\r\nbeamtime preparation. S.D.T, A.V. and R.D. acknowledge the financial support by the Slovenian Research Agency (ARRS) research core funding P2-0393 and P2-0423. Furthermore, A.V. acknowledge the funding from the Slovenian Research Agency, research project Z2−1863.\r\nS.A.F. is indebted to IST Austria for support. ","year":"2022","oa_version":"Published Version","_id":"12208","keyword":["General Physics and Astronomy","General Biochemistry","Genetics and Molecular Biology","General Chemistry","Multidisciplinary"],"article_type":"original","scopus_import":"1","publication_identifier":{"issn":["2041-1723"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","corr_author":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_published":"2022-10-24T00:00:00Z","fulldoi":"https://doi.org/10.1038/s41467-022-33931-4","isi":1,"oa":1,"title":"On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering","article_number":"6326","day":"24","publication":"Nature Communications"},{"acknowledgement":"We thank K. Sampath, A. Pauli and Y. Bellaїche for feedback on the manuscript. We also thank the members of the Heisenberg group, in particular A. Schauer and F. Nur Arslan, for help, technical advice and discussions, and the Bioimaging and Life Science facilities at IST\r\nAustria for continuous support. We thank C. Flandoli for the artwork in the figures. This work was supported by postdoctoral fellowships from EMBO (LTF-850-2017) and HFSP (LT000429/2018-L2) to D.P. and the European Union (European Research Council starting grant 851288 to É.H. and European Research Council advanced grant 742573 to C.-P.H.).","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"language":[{"iso":"eng"}],"file":[{"date_created":"2023-01-27T07:32:01Z","success":1,"creator":"dernst","file_size":36703569,"content_type":"application/pdf","access_level":"open_access","checksum":"c86a8e8d80d1bfc46d56a01e88a2526a","file_id":"12412","date_updated":"2023-01-27T07:32:01Z","relation":"main_file","file_name":"2022_NaturePhysics_Pinheiro.pdf"}],"type":"journal_article","volume":18,"article_type":"original","keyword":["General Physics and Astronomy"],"year":"2022","oa_version":"Published Version","_id":"12209","isi":1,"oa":1,"date_published":"2022-12-01T00:00:00Z","fulldoi":"https://doi.org/10.1038/s41567-022-01787-6","page":"1482-1493","corr_author":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"publication":"Nature Physics","day":"01","title":"Morphogen gradient orchestrates pattern-preserving tissue morphogenesis via motility-driven unjamming","ddc":["570"],"citation":{"short":"D.C. Nunes Pinheiro, R. Kardos, E.B. Hannezo, C.-P.J. Heisenberg, Nature Physics 18 (2022) 1482–1493.","ista":"Nunes Pinheiro DC, Kardos R, Hannezo EB, Heisenberg C-PJ. 2022. Morphogen gradient orchestrates pattern-preserving tissue morphogenesis via motility-driven unjamming. Nature Physics. 18(12), 1482–1493.","mla":"Nunes Pinheiro, Diana C., et al. “Morphogen Gradient Orchestrates Pattern-Preserving Tissue Morphogenesis via Motility-Driven Unjamming.” <i>Nature Physics</i>, vol. 18, no. 12, Springer Nature, 2022, pp. 1482–93, doi:<a href=\"https://doi.org/10.1038/s41567-022-01787-6\">10.1038/s41567-022-01787-6</a>.","apa":"Nunes Pinheiro, D. C., Kardos, R., Hannezo, E. B., &#38; Heisenberg, C.-P. J. (2022). Morphogen gradient orchestrates pattern-preserving tissue morphogenesis via motility-driven unjamming. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-022-01787-6\">https://doi.org/10.1038/s41567-022-01787-6</a>","ama":"Nunes Pinheiro DC, Kardos R, Hannezo EB, Heisenberg C-PJ. Morphogen gradient orchestrates pattern-preserving tissue morphogenesis via motility-driven unjamming. <i>Nature Physics</i>. 2022;18(12):1482-1493. doi:<a href=\"https://doi.org/10.1038/s41567-022-01787-6\">10.1038/s41567-022-01787-6</a>","ieee":"D. C. Nunes Pinheiro, R. Kardos, E. B. Hannezo, and C.-P. J. Heisenberg, “Morphogen gradient orchestrates pattern-preserving tissue morphogenesis via motility-driven unjamming,” <i>Nature Physics</i>, vol. 18, no. 12. Springer Nature, pp. 1482–1493, 2022.","chicago":"Nunes Pinheiro, Diana C, Roland Kardos, Edouard B Hannezo, and Carl-Philipp J Heisenberg. “Morphogen Gradient Orchestrates Pattern-Preserving Tissue Morphogenesis via Motility-Driven Unjamming.” <i>Nature Physics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41567-022-01787-6\">https://doi.org/10.1038/s41567-022-01787-6</a>."},"author":[{"orcid":"0000-0003-4333-7503","id":"2E839F16-F248-11E8-B48F-1D18A9856A87","last_name":"Nunes Pinheiro","first_name":"Diana C","full_name":"Nunes Pinheiro, Diana C"},{"first_name":"Roland","full_name":"Kardos, Roland","id":"4039350E-F248-11E8-B48F-1D18A9856A87","last_name":"Kardos"},{"full_name":"Hannezo, Edouard B","first_name":"Edouard B","last_name":"Hannezo","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561"},{"full_name":"Heisenberg, Carl-Philipp J","first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566","last_name":"Heisenberg"}],"doi":"10.1038/s41567-022-01787-6","intvolume":"        18","has_accepted_license":"1","publisher":"Springer Nature","article_processing_charge":"No","abstract":[{"lang":"eng","text":"Embryo development requires biochemical signalling to generate patterns of cell fates and active mechanical forces to drive tissue shape changes. However, how these processes are coordinated, and how tissue patterning is preserved despite the cellular flows occurring during morphogenesis, remains poorly understood. Gastrulation is a crucial embryonic stage that involves both patterning and internalization of the mesendoderm germ layer tissue. Here we show that, in zebrafish embryos, a gradient in Nodal signalling orchestrates pattern-preserving internalization movements by triggering a motility-driven unjamming transition. In addition to its role as a morphogen determining embryo patterning, graded Nodal signalling mechanically subdivides the mesendoderm into a small fraction of highly protrusive leader cells, able to autonomously internalize via local unjamming, and less protrusive followers, which need to be pulled inwards by the leaders. The Nodal gradient further enforces a code of preferential adhesion coupling leaders to their immediate followers, resulting in a collective and ordered mode of internalization that preserves mesendoderm patterning. Integrating this dual mechanical role of Nodal signalling into minimal active particle simulations quantitatively predicts both physiological and experimentally perturbed internalization movements. This provides a quantitative framework for how a morphogen-encoded unjamming transition can bidirectionally couple tissue mechanics with patterning during complex three-dimensional morphogenesis."}],"file_date_updated":"2023-01-27T07:32:01Z","department":[{"_id":"CaHe"},{"_id":"EdHa"}],"publication_status":"published","date_updated":"2025-04-14T07:46:59Z","issue":"12","project":[{"name":"Coordination of mesendoderm cell fate specification and internalization during zebrafish gastrulation","grant_number":"ALTF 850-2017","_id":"26520D1E-B435-11E9-9278-68D0E5697425"},{"grant_number":"ALTF 850-2017","name":"Coordination of mesendoderm cell fate specification and internalization during zebrafish gastrulation","_id":"26520D1E-B435-11E9-9278-68D0E5697425"},{"name":"Design Principles of Branching Morphogenesis","grant_number":"851288","_id":"05943252-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020"},{"name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation","grant_number":"742573","_id":"260F1432-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"month":"12","ec_funded":1,"quality_controlled":"1","external_id":{"isi":["000871319900002"]},"date_created":"2023-01-16T09:45:19Z","status":"public"},{"external_id":{"isi":["000852381200003"]},"quality_controlled":"1","status":"public","date_created":"2023-01-16T09:46:01Z","date_updated":"2025-04-14T07:44:00Z","publication_status":"published","month":"09","ec_funded":1,"project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"}],"publisher":"Springer Nature","has_accepted_license":"1","file_date_updated":"2023-01-27T07:59:27Z","department":[{"_id":"MiLe"}],"article_processing_charge":"No","abstract":[{"text":"Motivated by properties-controlling potential of the strain, we investigate strain dependence of structure, electronic, and magnetic properties of Sr2IrO4 using complementary theoretical tools: ab-initio calculations, analytical approaches (rigid octahedra picture, Slater-Koster integrals), and extended t−J model. We find that strain affects both Ir-Ir distance and Ir-O-Ir angle, and the rigid octahedra picture is not relevant. Second, we find fundamentally different behavior for compressive and tensile strain. One remarkable feature is the formation of two subsets of bond- and orbital-dependent carriers, a compass-like model, under compression. This originates from the strain-induced renormalization of the Ir-O-Ir superexchange and O on-site energy. We also show that under compressive (tensile) strain, Fermi surface becomes highly dispersive (relatively flat). Already at a tensile strain of 1.5%, we observe spectral weight redistribution, with the low-energy band acquiring almost purely singlet character. These results can be directly compared with future experiments.","lang":"eng"}],"citation":{"chicago":"Paerschke, Ekaterina, Wei-Chih Chen, Rajyavardhan Ray, and Cheng-Chien Chen. “Evolution of Electronic and Magnetic Properties of Sr₂IrO₄ under Strain.” <i>Npj Quantum Materials</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41535-022-00496-w\">https://doi.org/10.1038/s41535-022-00496-w</a>.","ama":"Paerschke E, Chen W-C, Ray R, Chen C-C. Evolution of electronic and magnetic properties of Sr₂IrO₄ under strain. <i>npj Quantum Materials</i>. 2022;7. doi:<a href=\"https://doi.org/10.1038/s41535-022-00496-w\">10.1038/s41535-022-00496-w</a>","ieee":"E. Paerschke, W.-C. Chen, R. Ray, and C.-C. Chen, “Evolution of electronic and magnetic properties of Sr₂IrO₄ under strain,” <i>npj Quantum Materials</i>, vol. 7. Springer Nature, 2022.","apa":"Paerschke, E., Chen, W.-C., Ray, R., &#38; Chen, C.-C. (2022). Evolution of electronic and magnetic properties of Sr₂IrO₄ under strain. <i>Npj Quantum Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41535-022-00496-w\">https://doi.org/10.1038/s41535-022-00496-w</a>","mla":"Paerschke, Ekaterina, et al. “Evolution of Electronic and Magnetic Properties of Sr₂IrO₄ under Strain.” <i>Npj Quantum Materials</i>, vol. 7, 90, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41535-022-00496-w\">10.1038/s41535-022-00496-w</a>.","short":"E. Paerschke, W.-C. Chen, R. Ray, C.-C. Chen, Npj Quantum Materials 7 (2022).","ista":"Paerschke E, Chen W-C, Ray R, Chen C-C. 2022. Evolution of electronic and magnetic properties of Sr₂IrO₄ under strain. npj Quantum Materials. 7, 90."},"ddc":["530"],"doi":"10.1038/s41535-022-00496-w","intvolume":"         7","author":[{"last_name":"Paerschke","orcid":"0000-0003-0853-8182","id":"8275014E-6063-11E9-9B7F-6338E6697425","first_name":"Ekaterina","full_name":"Paerschke, Ekaterina"},{"last_name":"Chen","first_name":"Wei-Chih","full_name":"Chen, Wei-Chih"},{"first_name":"Rajyavardhan","full_name":"Ray, Rajyavardhan","last_name":"Ray"},{"full_name":"Chen, Cheng-Chien","first_name":"Cheng-Chien","last_name":"Chen"}],"publication":"npj Quantum Materials","article_number":"90","title":"Evolution of electronic and magnetic properties of Sr₂IrO₄ under strain","day":"10","date_published":"2022-09-10T00:00:00Z","fulldoi":"https://doi.org/10.1038/s41535-022-00496-w","isi":1,"oa":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","publication_identifier":{"eissn":["2397-4648"]},"corr_author":"1","related_material":{"link":[{"url":"https://doi.org/10.1038/s41535-022-00510-1","relation":"erratum"}]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"keyword":["Condensed Matter Physics","Electronic","Optical and Magnetic Materials"],"article_type":"original","year":"2022","_id":"12213","oa_version":"Published Version","language":[{"iso":"eng"}],"acknowledgement":"E.M.P. thanks Eugenio Paris, Thorsten Schmitt, Krzysztof Wohlfeld, and other coauthors for an inspiring previous collaboration23, and is grateful to Gang Cao, Ambrose Seo, and Jungho Kim for insightful discussions. R.R. acknowledges helpful discussion with Sanjeev Kumar and Manuel Richter. This project has received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 754411. C.C.C. acknowledges support from the U.S. National Science Foundation Award No. DMR-2142801.","volume":7,"type":"journal_article","file":[{"success":1,"date_created":"2023-01-27T07:59:27Z","file_id":"12414","date_updated":"2023-01-27T07:59:27Z","relation":"main_file","file_name":"2022_NPJ_Paerschke.pdf","creator":"dernst","file_size":1852598,"content_type":"application/pdf","access_level":"open_access","checksum":"d93b477b5b95c0d1b8f9fef90a81f565"}]},{"oa_version":"Published Version","_id":"12217","year":"2022","keyword":["General Physics and Astronomy","General Biochemistry","Genetics and Molecular Biology","General Chemistry","Multidisciplinary"],"article_type":"original","volume":13,"file":[{"date_created":"2023-01-27T08:14:48Z","success":1,"creator":"dernst","file_size":22645149,"content_type":"application/pdf","checksum":"295261b5172274fd5b8f85a6a6058828","access_level":"open_access","file_id":"12416","date_updated":"2023-01-27T08:14:48Z","file_name":"2022_NatureCommunications_Randriamanantsoa.pdf","relation":"main_file"}],"type":"journal_article","language":[{"iso":"eng"}],"acknowledgement":"A.R.B. acknowledges the financial support of the European Research Council (ERC) through the funding of the grant Principles of Integrin Mechanics and Adhesion (PoINT) and the German Research Foundation (DFG, SFB 1032, project ID 201269156). E.H. was supported by the European Union (European Research Council Starting Grant 851288). D.S., M.R., and R.R. acknowledge the support by the German Research Foundation (DFG, SFB1321 Modeling and Targeting Pancreatic Cancer, Project S01, project ID 329628492). C.S. and M.R. acknowledge the support by the German Research Foundation (DFG, SFB1321 Modeling and Targeting Pancreatic Cancer, Project 12, project ID 329628492). M.R. was supported by the German Research Foundation (DFG RE 3723/4-1). A.P. and M.R. were supported by the German Cancer Aid (Max-Eder Program 111273 and 70114328).\r\nOpen Access funding enabled and organized by Projekt DEAL.","pmid":1,"title":"Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids","article_number":"5219","day":"05","publication":"Nature Communications","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","publication_identifier":{"issn":["2041-1723"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"related_material":{"record":[{"relation":"research_data","id":"13068","status":"public"}]},"fulldoi":"https://doi.org/10.1038/s41467-022-32806-y","date_published":"2022-09-05T00:00:00Z","oa":1,"isi":1,"file_date_updated":"2023-01-27T08:14:48Z","department":[{"_id":"EdHa"}],"abstract":[{"lang":"eng","text":"The development dynamics and self-organization of glandular branched epithelia is of utmost importance for our understanding of diverse processes ranging from normal tissue growth to the growth of cancerous tissues. Using single primary murine pancreatic ductal adenocarcinoma (PDAC) cells embedded in a collagen matrix and adapted media supplementation, we generate organoids that self-organize into highly branched structures displaying a seamless lumen connecting terminal end buds, replicating in vivo PDAC architecture. We identify distinct morphogenesis phases, each characterized by a unique pattern of cell invasion, matrix deformation, protein expression, and respective molecular dependencies. We propose a minimal theoretical model of a branching and proliferating tissue, capturing the dynamics of the first phases. Observing the interaction of morphogenesis, mechanical environment and gene expression in vitro sets a benchmark for the understanding of self-organization processes governing complex organoid structure formation processes and branching morphogenesis."}],"article_processing_charge":"No","publisher":"Springer Nature","has_accepted_license":"1","intvolume":"        13","doi":"10.1038/s41467-022-32806-y","author":[{"full_name":"Randriamanantsoa, S.","first_name":"S.","last_name":"Randriamanantsoa"},{"first_name":"A.","full_name":"Papargyriou, A.","last_name":"Papargyriou"},{"last_name":"Maurer","full_name":"Maurer, H. C.","first_name":"H. C."},{"last_name":"Peschke","first_name":"K.","full_name":"Peschke, K."},{"first_name":"M.","full_name":"Schuster, M.","last_name":"Schuster"},{"first_name":"G.","full_name":"Zecchin, G.","last_name":"Zecchin"},{"first_name":"K.","full_name":"Steiger, K.","last_name":"Steiger"},{"full_name":"Öllinger, R.","first_name":"R.","last_name":"Öllinger"},{"last_name":"Saur","full_name":"Saur, D.","first_name":"D."},{"full_name":"Scheel, C.","first_name":"C.","last_name":"Scheel"},{"last_name":"Rad","first_name":"R.","full_name":"Rad, R."},{"first_name":"Edouard B","full_name":"Hannezo, Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo"},{"last_name":"Reichert","full_name":"Reichert, M.","first_name":"M."},{"full_name":"Bausch, A. R.","first_name":"A. R.","last_name":"Bausch"}],"citation":{"short":"S. Randriamanantsoa, A. Papargyriou, H.C. Maurer, K. Peschke, M. Schuster, G. Zecchin, K. Steiger, R. Öllinger, D. Saur, C. Scheel, R. Rad, E.B. Hannezo, M. Reichert, A.R. Bausch, Nature Communications 13 (2022).","ista":"Randriamanantsoa S, Papargyriou A, Maurer HC, Peschke K, Schuster M, Zecchin G, Steiger K, Öllinger R, Saur D, Scheel C, Rad R, Hannezo EB, Reichert M, Bausch AR. 2022. Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids. Nature Communications. 13, 5219.","chicago":"Randriamanantsoa, S., A. Papargyriou, H. C. Maurer, K. Peschke, M. Schuster, G. Zecchin, K. Steiger, et al. “Spatiotemporal Dynamics of Self-Organized Branching in Pancreas-Derived Organoids.” <i>Nature Communications</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41467-022-32806-y\">https://doi.org/10.1038/s41467-022-32806-y</a>.","ama":"Randriamanantsoa S, Papargyriou A, Maurer HC, et al. Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids. <i>Nature Communications</i>. 2022;13. doi:<a href=\"https://doi.org/10.1038/s41467-022-32806-y\">10.1038/s41467-022-32806-y</a>","ieee":"S. Randriamanantsoa <i>et al.</i>, “Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022.","apa":"Randriamanantsoa, S., Papargyriou, A., Maurer, H. C., Peschke, K., Schuster, M., Zecchin, G., … Bausch, A. R. (2022). Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-022-32806-y\">https://doi.org/10.1038/s41467-022-32806-y</a>","mla":"Randriamanantsoa, S., et al. “Spatiotemporal Dynamics of Self-Organized Branching in Pancreas-Derived Organoids.” <i>Nature Communications</i>, vol. 13, 5219, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41467-022-32806-y\">10.1038/s41467-022-32806-y</a>."},"ddc":["570"],"status":"public","date_created":"2023-01-16T09:46:53Z","external_id":{"pmid":["36064947"],"isi":["000850348400025"]},"quality_controlled":"1","ec_funded":1,"month":"09","project":[{"call_identifier":"H2020","grant_number":"851288","name":"Design Principles of Branching Morphogenesis","_id":"05943252-7A3F-11EA-A408-12923DDC885E"}],"date_updated":"2025-06-11T13:53:55Z","publication_status":"published"},{"publication_status":"published","issue":"11","date_updated":"2023-08-04T09:33:52Z","month":"11","quality_controlled":"1","external_id":{"isi":["000796323500001"]},"date_created":"2023-01-16T09:50:26Z","status":"public","ddc":["510"],"citation":{"ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Density of small singular values of the shifted real Ginibre ensemble,” <i>Annales Henri Poincaré</i>, vol. 23, no. 11. Springer Nature, pp. 3981–4002, 2022.","apa":"Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2022). Density of small singular values of the shifted real Ginibre ensemble. <i>Annales Henri Poincaré</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00023-022-01188-8\">https://doi.org/10.1007/s00023-022-01188-8</a>","ama":"Cipolloni G, Erdös L, Schröder DJ. Density of small singular values of the shifted real Ginibre ensemble. <i>Annales Henri Poincaré</i>. 2022;23(11):3981-4002. doi:<a href=\"https://doi.org/10.1007/s00023-022-01188-8\">10.1007/s00023-022-01188-8</a>","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Density of Small Singular Values of the Shifted Real Ginibre Ensemble.” <i>Annales Henri Poincaré</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00023-022-01188-8\">https://doi.org/10.1007/s00023-022-01188-8</a>.","mla":"Cipolloni, Giorgio, et al. “Density of Small Singular Values of the Shifted Real Ginibre Ensemble.” <i>Annales Henri Poincaré</i>, vol. 23, no. 11, Springer Nature, 2022, pp. 3981–4002, doi:<a href=\"https://doi.org/10.1007/s00023-022-01188-8\">10.1007/s00023-022-01188-8</a>.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Annales Henri Poincaré 23 (2022) 3981–4002.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2022. Density of small singular values of the shifted real Ginibre ensemble. Annales Henri Poincaré. 23(11), 3981–4002."},"author":[{"id":"42198EFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4901-7992","last_name":"Cipolloni","full_name":"Cipolloni, Giorgio","first_name":"Giorgio"},{"orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","last_name":"Erdös","first_name":"László","full_name":"Erdös, László"},{"id":"408ED176-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2904-1856","last_name":"Schröder","full_name":"Schröder, Dominik J","first_name":"Dominik J"}],"intvolume":"        23","doi":"10.1007/s00023-022-01188-8","publisher":"Springer Nature","has_accepted_license":"1","article_processing_charge":"No","abstract":[{"text":"We derive a precise asymptotic formula for the density of the small singular values of the real Ginibre matrix ensemble shifted by a complex parameter z as the dimension tends to infinity. For z away from the real axis the formula coincides with that for the complex Ginibre ensemble we derived earlier in Cipolloni et al. (Prob Math Phys 1:101–146, 2020). On the level of the one-point function of the low lying singular values we thus confirm the transition from real to complex Ginibre ensembles as the shift parameter z becomes genuinely complex; the analogous phenomenon has been well known for eigenvalues. We use the superbosonization formula (Littelmann et al. in Comm Math Phys 283:343–395, 2008) in a regime where the main contribution comes from a three dimensional saddle manifold.","lang":"eng"}],"file_date_updated":"2023-01-27T11:06:47Z","department":[{"_id":"LaEr"}],"oa":1,"isi":1,"fulldoi":"https://doi.org/10.1007/s00023-022-01188-8","date_published":"2022-11-01T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"page":"3981-4002","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_identifier":{"eissn":["1424-0661"],"issn":["1424-0637"]},"scopus_import":"1","publication":"Annales Henri Poincaré","day":"01","title":"Density of small singular values of the shifted real Ginibre ensemble","acknowledgement":"Open access funding provided by Swiss Federal Institute of Technology Zurich. Supported by Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation.","language":[{"iso":"eng"}],"file":[{"success":1,"date_created":"2023-01-27T11:06:47Z","file_id":"12424","date_updated":"2023-01-27T11:06:47Z","relation":"main_file","file_name":"2022_AnnalesHenriP_Cipolloni.pdf","creator":"dernst","file_size":1333638,"content_type":"application/pdf","checksum":"5582f059feeb2f63e2eb68197a34d7dc","access_level":"open_access"}],"type":"journal_article","volume":23,"article_type":"original","keyword":["Mathematical Physics","Nuclear and High Energy Physics","Statistical and Nonlinear Physics"],"_id":"12232","oa_version":"Published Version","year":"2022"},{"quality_controlled":"1","external_id":{"isi":["000869715800001"],"arxiv":["2206.04443"]},"date_created":"2023-01-16T09:52:58Z","status":"public","publication_status":"published","date_updated":"2025-04-14T07:57:18Z","issue":"10","project":[{"grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta","_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020"}],"month":"10","ec_funded":1,"has_accepted_license":"1","publisher":"AIP Publishing","article_processing_charge":"Yes (via OA deal)","abstract":[{"lang":"eng","text":"We consider the eigenvalues of a large dimensional real or complex Ginibre matrix in the region of the complex plane where their real parts reach their maximum value. This maximum follows the Gumbel distribution and that these extreme eigenvalues form a Poisson point process as the dimension asymptotically tends to infinity. In the complex case, these facts have already been established by Bender [Probab. Theory Relat. Fields 147, 241 (2010)] and in the real case by Akemann and Phillips [J. Stat. Phys. 155, 421 (2014)] even for the more general elliptic ensemble with a sophisticated saddle point analysis. The purpose of this article is to give a very short direct proof in the Ginibre case with an effective error term. Moreover, our estimates on the correlation kernel in this regime serve as a key input for accurately locating [Formula: see text] for any large matrix X with i.i.d. entries in the companion paper [G. Cipolloni et al., arXiv:2206.04448 (2022)]. "}],"department":[{"_id":"LaEr"}],"file_date_updated":"2023-01-30T08:01:10Z","citation":{"mla":"Cipolloni, Giorgio, et al. “Directional Extremal Statistics for Ginibre Eigenvalues.” <i>Journal of Mathematical Physics</i>, vol. 63, no. 10, 103303, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0104290\">10.1063/5.0104290</a>.","apa":"Cipolloni, G., Erdös, L., Schröder, D. J., &#38; Xu, Y. (2022). Directional extremal statistics for Ginibre eigenvalues. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0104290\">https://doi.org/10.1063/5.0104290</a>","ieee":"G. Cipolloni, L. Erdös, D. J. Schröder, and Y. Xu, “Directional extremal statistics for Ginibre eigenvalues,” <i>Journal of Mathematical Physics</i>, vol. 63, no. 10. AIP Publishing, 2022.","ama":"Cipolloni G, Erdös L, Schröder DJ, Xu Y. Directional extremal statistics for Ginibre eigenvalues. <i>Journal of Mathematical Physics</i>. 2022;63(10). doi:<a href=\"https://doi.org/10.1063/5.0104290\">10.1063/5.0104290</a>","chicago":"Cipolloni, Giorgio, László Erdös, Dominik J Schröder, and Yuanyuan Xu. “Directional Extremal Statistics for Ginibre Eigenvalues.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0104290\">https://doi.org/10.1063/5.0104290</a>.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Y. Xu, Journal of Mathematical Physics 63 (2022).","ista":"Cipolloni G, Erdös L, Schröder DJ, Xu Y. 2022. Directional extremal statistics for Ginibre eigenvalues. Journal of Mathematical Physics. 63(10), 103303."},"ddc":["510","530"],"author":[{"last_name":"Cipolloni","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4901-7992","full_name":"Cipolloni, Giorgio","first_name":"Giorgio"},{"full_name":"Erdös, László","first_name":"László","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603"},{"full_name":"Schröder, Dominik J","first_name":"Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2904-1856","last_name":"Schröder"},{"last_name":"Xu","id":"7902bdb1-a2a4-11eb-a164-c9216f71aea3","orcid":"0000-0003-1559-1205","full_name":"Xu, Yuanyuan","first_name":"Yuanyuan"}],"doi":"10.1063/5.0104290","intvolume":"        63","publication":"Journal of Mathematical Physics","day":"14","title":"Directional extremal statistics for Ginibre eigenvalues","article_number":"103303","isi":1,"oa":1,"date_published":"2022-10-14T00:00:00Z","fulldoi":"https://doi.org/10.1063/5.0104290","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_identifier":{"eissn":["1089-7658"],"issn":["0022-2488"]},"scopus_import":"1","article_type":"original","keyword":["Mathematical Physics","Statistical and Nonlinear Physics"],"arxiv":1,"year":"2022","oa_version":"Published Version","_id":"12243","acknowledgement":"The authors are grateful to G. Akemann for bringing Refs. 19 and 24–26 to their attention. Discussions with Guillaume Dubach on a preliminary version of this project are acknowledged.\r\nL.E. and Y.X. were supported by the ERC Advanced Grant “RMTBeyond” under Grant No. 101020331. D.S. was supported by Dr. Max Rössler, the Walter Haefner Foundation, and the ETH Zürich Foundation.","language":[{"iso":"eng"}],"file":[{"date_created":"2023-01-30T08:01:10Z","success":1,"file_size":7356807,"creator":"dernst","checksum":"2db278ae5b07f345a7e3fec1f92b5c33","access_level":"open_access","content_type":"application/pdf","date_updated":"2023-01-30T08:01:10Z","file_id":"12436","file_name":"2022_JourMathPhysics_Cipolloni2.pdf","relation":"main_file"}],"type":"journal_article","volume":63},{"isi":1,"oa":1,"date_published":"2022-09-15T00:00:00Z","fulldoi":"https://doi.org/10.1007/s11005-022-01584-5","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication_identifier":{"issn":["0377-9017"],"eissn":["1573-0530"]},"scopus_import":"1","publication":"Letters in Mathematical Physics","day":"15","article_number":"92","title":"Improved Lieb–Oxford bound on the indirect and exchange energies","acknowledgement":"We would like to thank David Gontier for useful advice on the numerical simulations. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreements MDFT No. 725528 of M.L. and AQUAMS No. 694227 of R.S.). We are thankful for the hospitality of the Institut Henri Poincaré in Paris, where part of this work was done.","language":[{"iso":"eng"}],"type":"journal_article","volume":112,"article_type":"original","keyword":["Mathematical Physics","Statistical and Nonlinear Physics"],"year":"2022","arxiv":1,"_id":"12246","oa_version":"Preprint","publication_status":"published","date_updated":"2025-04-14T07:26:59Z","issue":"5","project":[{"call_identifier":"H2020","grant_number":"694227","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"}],"month":"09","ec_funded":1,"quality_controlled":"1","external_id":{"isi":["000854762600001"],"arxiv":["2203.12473"]},"date_created":"2023-01-16T09:53:54Z","status":"public","citation":{"ista":"Lewin M, Lieb EH, Seiringer R. 2022. Improved Lieb–Oxford bound on the indirect and exchange energies. Letters in Mathematical Physics. 112(5), 92.","short":"M. Lewin, E.H. Lieb, R. Seiringer, Letters in Mathematical Physics 112 (2022).","chicago":"Lewin, Mathieu, Elliott H. Lieb, and Robert Seiringer. “Improved Lieb–Oxford Bound on the Indirect and Exchange Energies.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s11005-022-01584-5\">https://doi.org/10.1007/s11005-022-01584-5</a>.","ieee":"M. Lewin, E. H. Lieb, and R. Seiringer, “Improved Lieb–Oxford bound on the indirect and exchange energies,” <i>Letters in Mathematical Physics</i>, vol. 112, no. 5. Springer Nature, 2022.","ama":"Lewin M, Lieb EH, Seiringer R. Improved Lieb–Oxford bound on the indirect and exchange energies. <i>Letters in Mathematical Physics</i>. 2022;112(5). doi:<a href=\"https://doi.org/10.1007/s11005-022-01584-5\">10.1007/s11005-022-01584-5</a>","apa":"Lewin, M., Lieb, E. H., &#38; Seiringer, R. (2022). Improved Lieb–Oxford bound on the indirect and exchange energies. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-022-01584-5\">https://doi.org/10.1007/s11005-022-01584-5</a>","mla":"Lewin, Mathieu, et al. “Improved Lieb–Oxford Bound on the Indirect and Exchange Energies.” <i>Letters in Mathematical Physics</i>, vol. 112, no. 5, 92, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1007/s11005-022-01584-5\">10.1007/s11005-022-01584-5</a>."},"author":[{"first_name":"Mathieu","full_name":"Lewin, Mathieu","last_name":"Lewin"},{"full_name":"Lieb, Elliott H.","first_name":"Elliott H.","last_name":"Lieb"},{"orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","first_name":"Robert","full_name":"Seiringer, Robert"}],"doi":"10.1007/s11005-022-01584-5","intvolume":"       112","publisher":"Springer Nature","article_processing_charge":"No","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2203.12473","open_access":"1"}],"abstract":[{"lang":"eng","text":"The Lieb–Oxford inequality provides a lower bound on the Coulomb energy of a classical system of N identical charges only in terms of their one-particle density. We prove here a new estimate on the best constant in this inequality. Numerical evaluation provides the value 1.58, which is a significant improvement to the previously known value 1.64. The best constant has recently been shown to be larger than 1.44. In a second part, we prove that the constant can be reduced to 1.25 when the inequality is restricted to Hartree–Fock states. This is the first proof that the exchange term is always much lower than the full indirect Coulomb energy."}],"department":[{"_id":"RoSe"}]},{"oa_version":"Published Version","_id":"12259","year":"2022","arxiv":1,"keyword":["Applied Mathematics","General Physics and Astronomy","Mathematical Physics","Statistical and Nonlinear Physics"],"article_type":"original","volume":32,"type":"journal_article","file":[{"relation":"main_file","file_name":"2022_Chaos_Choueiri.pdf","date_updated":"2023-01-30T09:41:12Z","file_id":"12445","checksum":"17881eff8b21969359a2dd64620120ba","access_level":"open_access","content_type":"application/pdf","file_size":3209644,"creator":"dernst","success":1,"date_created":"2023-01-30T09:41:12Z"}],"language":[{"iso":"eng"}],"pmid":1,"acknowledgement":"This work was partially funded by the Institute of Science and Technology Austria Interdisciplinary Project Committee Grant “Pilot-Wave Hydrodynamics: Chaos and Quantum Analogies.”","title":"Crises and chaotic scattering in hydrodynamic pilot-wave experiments","article_number":"093138","day":"26","publication":"Chaos: An Interdisciplinary Journal of Nonlinear Science","scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1089-7682"],"issn":["1054-1500"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"fulldoi":"https://doi.org/10.1063/5.0102904","date_published":"2022-09-26T00:00:00Z","oa":1,"isi":1,"file_date_updated":"2023-01-30T09:41:12Z","department":[{"_id":"MaSe"},{"_id":"BjHo"},{"_id":"NanoFab"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"Theoretical foundations of chaos have been predominantly laid out for finite-dimensional dynamical systems, such as the three-body problem in classical mechanics and the Lorenz model in dissipative systems. In contrast, many real-world chaotic phenomena, e.g., weather, arise in systems with many (formally infinite) degrees of freedom, which limits direct quantitative analysis of such systems using chaos theory. In the present work, we demonstrate that the hydrodynamic pilot-wave systems offer a bridge between low- and high-dimensional chaotic phenomena by allowing for a systematic study of how the former connects to the latter. Specifically, we present experimental results, which show the formation of low-dimensional chaotic attractors upon destabilization of regular dynamics and a final transition to high-dimensional chaos via the merging of distinct chaotic regions through a crisis bifurcation. Moreover, we show that the post-crisis dynamics of the system can be rationalized as consecutive scatterings from the nonattracting chaotic sets with lifetimes following exponential distributions. "}],"publisher":"AIP Publishing","has_accepted_license":"1","intvolume":"        32","doi":"10.1063/5.0102904","author":[{"id":"448BD5BC-F248-11E8-B48F-1D18A9856A87","last_name":"Choueiri","first_name":"George H","full_name":"Choueiri, George H"},{"full_name":"Suri, Balachandra","first_name":"Balachandra","last_name":"Suri","id":"47A5E706-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Merrin","id":"4515C308-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5145-4609","full_name":"Merrin, Jack","first_name":"Jack"},{"full_name":"Serbyn, Maksym","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","last_name":"Serbyn"},{"id":"3A374330-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2057-2754","last_name":"Hof","full_name":"Hof, Björn","first_name":"Björn"},{"first_name":"Nazmi B","full_name":"Budanur, Nazmi B","last_name":"Budanur","orcid":"0000-0003-0423-5010","id":"3EA1010E-F248-11E8-B48F-1D18A9856A87"}],"citation":{"ama":"Choueiri GH, Suri B, Merrin J, Serbyn M, Hof B, Budanur NB. Crises and chaotic scattering in hydrodynamic pilot-wave experiments. <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. 2022;32(9). doi:<a href=\"https://doi.org/10.1063/5.0102904\">10.1063/5.0102904</a>","apa":"Choueiri, G. H., Suri, B., Merrin, J., Serbyn, M., Hof, B., &#38; Budanur, N. B. (2022). Crises and chaotic scattering in hydrodynamic pilot-wave experiments. <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0102904\">https://doi.org/10.1063/5.0102904</a>","ieee":"G. H. Choueiri, B. Suri, J. Merrin, M. Serbyn, B. Hof, and N. B. Budanur, “Crises and chaotic scattering in hydrodynamic pilot-wave experiments,” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>, vol. 32, no. 9. AIP Publishing, 2022.","chicago":"Choueiri, George H, Balachandra Suri, Jack Merrin, Maksym Serbyn, Björn Hof, and Nazmi B Budanur. “Crises and Chaotic Scattering in Hydrodynamic Pilot-Wave Experiments.” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0102904\">https://doi.org/10.1063/5.0102904</a>.","mla":"Choueiri, George H., et al. “Crises and Chaotic Scattering in Hydrodynamic Pilot-Wave Experiments.” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>, vol. 32, no. 9, 093138, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0102904\">10.1063/5.0102904</a>.","ista":"Choueiri GH, Suri B, Merrin J, Serbyn M, Hof B, Budanur NB. 2022. Crises and chaotic scattering in hydrodynamic pilot-wave experiments. Chaos: An Interdisciplinary Journal of Nonlinear Science. 32(9), 093138.","short":"G.H. Choueiri, B. Suri, J. Merrin, M. Serbyn, B. Hof, N.B. Budanur, Chaos: An Interdisciplinary Journal of Nonlinear Science 32 (2022)."},"ddc":["530"],"status":"public","date_created":"2023-01-16T09:58:16Z","external_id":{"pmid":["36182399"],"isi":["000861009600005"],"arxiv":["2206.01531"]},"quality_controlled":"1","month":"09","issue":"9","date_updated":"2025-06-11T13:41:34Z","publication_status":"published"},{"has_accepted_license":"1","publisher":"American Physical Society","article_processing_charge":"No","abstract":[{"text":"Cell migration in confining physiological environments relies on the concerted dynamics of several cellular components, including protrusions, adhesions with the environment, and the cell nucleus. However, it remains poorly understood how the dynamic interplay of these components and the cell polarity determine the emergent migration behavior at the cellular scale. Here, we combine data-driven inference with a mechanistic bottom-up approach to develop a model for protrusion and polarity dynamics in confined cell migration, revealing how the cellular dynamics adapt to confining geometries. Specifically, we use experimental data of joint protrusion-nucleus migration trajectories of cells on confining micropatterns to systematically determine a mechanistic model linking the stochastic dynamics of cell polarity, protrusions, and nucleus. This model indicates that the cellular dynamics adapt to confining constrictions through a switch in the polarity dynamics from a negative to a positive self-reinforcing feedback loop. Our model further reveals how this feedback loop leads to stereotypical cycles of protrusion-nucleus dynamics that drive the migration of the cell through constrictions. These cycles are disrupted upon perturbation of cytoskeletal components, indicating that the positive feedback is controlled by cellular migration mechanisms. Our data-driven theoretical approach therefore identifies polarity feedback adaptation as a key mechanism in confined cell migration.","lang":"eng"}],"department":[{"_id":"EdHa"}],"file_date_updated":"2023-01-30T11:07:27Z","ddc":["530","570"],"citation":{"short":"D. Brückner, M. Schmitt, A. Fink, G. Ladurner, J. Flommersfeld, N. Arlt, E.B. Hannezo, J.O. Rädler, C.P. Broedersz, Physical Review X 12 (2022).","ista":"Brückner D, Schmitt M, Fink A, Ladurner G, Flommersfeld J, Arlt N, Hannezo EB, Rädler JO, Broedersz CP. 2022. Geometry adaptation of protrusion and polarity dynamics in confined cell migration. Physical Review X. 12(3), 031041.","mla":"Brückner, David, et al. “Geometry Adaptation of Protrusion and Polarity Dynamics in Confined Cell Migration.” <i>Physical Review X</i>, vol. 12, no. 3, 031041, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/physrevx.12.031041\">10.1103/physrevx.12.031041</a>.","apa":"Brückner, D., Schmitt, M., Fink, A., Ladurner, G., Flommersfeld, J., Arlt, N., … Broedersz, C. P. (2022). Geometry adaptation of protrusion and polarity dynamics in confined cell migration. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevx.12.031041\">https://doi.org/10.1103/physrevx.12.031041</a>","ama":"Brückner D, Schmitt M, Fink A, et al. Geometry adaptation of protrusion and polarity dynamics in confined cell migration. <i>Physical Review X</i>. 2022;12(3). doi:<a href=\"https://doi.org/10.1103/physrevx.12.031041\">10.1103/physrevx.12.031041</a>","ieee":"D. Brückner <i>et al.</i>, “Geometry adaptation of protrusion and polarity dynamics in confined cell migration,” <i>Physical Review X</i>, vol. 12, no. 3. American Physical Society, 2022.","chicago":"Brückner, David, Matthew Schmitt, Alexandra Fink, Georg Ladurner, Johannes Flommersfeld, Nicolas Arlt, Edouard B Hannezo, Joachim O. Rädler, and Chase P. Broedersz. “Geometry Adaptation of Protrusion and Polarity Dynamics in Confined Cell Migration.” <i>Physical Review X</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/physrevx.12.031041\">https://doi.org/10.1103/physrevx.12.031041</a>."},"author":[{"orcid":"0000-0001-7205-2975","id":"e1e86031-6537-11eb-953a-f7ab92be508d","last_name":"Brückner","first_name":"David","full_name":"Brückner, David"},{"first_name":"Matthew","full_name":"Schmitt, Matthew","last_name":"Schmitt"},{"last_name":"Fink","full_name":"Fink, Alexandra","first_name":"Alexandra"},{"first_name":"Georg","full_name":"Ladurner, Georg","last_name":"Ladurner"},{"first_name":"Johannes","full_name":"Flommersfeld, Johannes","last_name":"Flommersfeld"},{"last_name":"Arlt","full_name":"Arlt, Nicolas","first_name":"Nicolas"},{"first_name":"Edouard B","full_name":"Hannezo, Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo"},{"last_name":"Rädler","first_name":"Joachim O.","full_name":"Rädler, Joachim O."},{"last_name":"Broedersz","full_name":"Broedersz, Chase P.","first_name":"Chase P."}],"intvolume":"        12","doi":"10.1103/physrevx.12.031041","quality_controlled":"1","external_id":{"isi":["000861534700001"],"arxiv":["2106.01014"]},"date_created":"2023-01-16T10:02:06Z","status":"public","publication_status":"published","issue":"3","date_updated":"2023-08-04T10:25:49Z","month":"09","article_type":"original","keyword":["General Physics and Astronomy"],"_id":"12277","oa_version":"Published Version","arxiv":1,"year":"2022","acknowledgement":"We thank Grzegorz Gradziuk, StevenRiedijk, Janni Harju, and M. R. Schnucki for helpful discussions, and Andriy Goychuk for advice on the image segmentation. This project\r\nwas funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation), Project No. 201269156—SFB 1032 (Projects B01 and B12). D. B. B. is supported by the NOMIS Foundation and in part by a DFG fellowship within the Graduate School of Quantitative Biosciences Munich (QBM), as well as by the Joachim Herz Stiftung.","language":[{"iso":"eng"}],"file":[{"creator":"dernst","file_size":4686804,"content_type":"application/pdf","checksum":"40a8fbc3663bf07b37cb80020974d40d","access_level":"open_access","file_id":"12458","date_updated":"2023-01-30T11:07:27Z","relation":"main_file","file_name":"2022_PhysicalReviewX_Brueckner.pdf","date_created":"2023-01-30T11:07:27Z","success":1}],"type":"journal_article","volume":12,"publication":"Physical Review X","day":"20","article_number":"031041","title":"Geometry adaptation of protrusion and polarity dynamics in confined cell migration","oa":1,"isi":1,"fulldoi":"https://doi.org/10.1103/physrevx.12.031041","date_published":"2022-09-20T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","publication_identifier":{"issn":["2160-3308"]}},{"file_date_updated":"2023-02-02T08:35:52Z","department":[{"_id":"MaMo"}],"article_processing_charge":"Yes (via OA deal)","abstract":[{"lang":"eng","text":"We consider the problem of estimating a signal from measurements obtained via a generalized linear model. We focus on estimators based on approximate message passing (AMP), a family of iterative algorithms with many appealing features: the performance of AMP in the high-dimensional limit can be succinctly characterized under suitable model assumptions; AMP can also be tailored to the empirical distribution of the signal entries, and for a wide class of estimation problems, AMP is conjectured to be optimal among all polynomial-time algorithms. However, a major issue of AMP is that in many models (such as phase retrieval), it requires an initialization correlated with the ground-truth signal and independent from the measurement matrix. Assuming that such an initialization is available is typically not realistic. In this paper, we solve this problem by proposing an AMP algorithm initialized with a spectral estimator. With such an initialization, the standard AMP analysis fails since the spectral estimator depends in a complicated way on the design matrix. Our main contribution is a rigorous characterization of the performance of AMP with spectral initialization in the high-dimensional limit. The key technical idea is to define and analyze a two-phase artificial AMP algorithm that first produces the spectral estimator, and then closely approximates the iterates of the true AMP. We also provide numerical results that demonstrate the validity of the proposed approach."}],"has_accepted_license":"1","publisher":"IOP Publishing","intvolume":"      2022","doi":"10.1088/1742-5468/ac9828","author":[{"full_name":"Mondelli, Marco","first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020","last_name":"Mondelli"},{"full_name":"Venkataramanan, Ramji","first_name":"Ramji","last_name":"Venkataramanan"}],"ddc":["510","530"],"citation":{"short":"M. Mondelli, R. Venkataramanan, Journal of Statistical Mechanics: Theory and Experiment 2022 (2022).","ista":"Mondelli M, Venkataramanan R. 2022. Approximate message passing with spectral initialization for generalized linear models. Journal of Statistical Mechanics: Theory and Experiment. 2022(11), 114003.","mla":"Mondelli, Marco, and Ramji Venkataramanan. “Approximate Message Passing with Spectral Initialization for Generalized Linear Models.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2022, no. 11, 114003, IOP Publishing, 2022, doi:<a href=\"https://doi.org/10.1088/1742-5468/ac9828\">10.1088/1742-5468/ac9828</a>.","ama":"Mondelli M, Venkataramanan R. Approximate message passing with spectral initialization for generalized linear models. <i>Journal of Statistical Mechanics: Theory and Experiment</i>. 2022;2022(11). doi:<a href=\"https://doi.org/10.1088/1742-5468/ac9828\">10.1088/1742-5468/ac9828</a>","ieee":"M. Mondelli and R. Venkataramanan, “Approximate message passing with spectral initialization for generalized linear models,” <i>Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2022, no. 11. IOP Publishing, 2022.","apa":"Mondelli, M., &#38; Venkataramanan, R. (2022). Approximate message passing with spectral initialization for generalized linear models. <i>Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1742-5468/ac9828\">https://doi.org/10.1088/1742-5468/ac9828</a>","chicago":"Mondelli, Marco, and Ramji Venkataramanan. “Approximate Message Passing with Spectral Initialization for Generalized Linear Models.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing, 2022. <a href=\"https://doi.org/10.1088/1742-5468/ac9828\">https://doi.org/10.1088/1742-5468/ac9828</a>."},"status":"public","date_created":"2023-02-02T08:31:57Z","external_id":{"isi":["000889589900001"]},"quality_controlled":"1","month":"11","project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"issue":"11","date_updated":"2025-04-15T07:50:16Z","publication_status":"published","oa_version":"Published Version","_id":"12480","year":"2022","keyword":["Statistics","Probability and Uncertainty","Statistics and Probability","Statistical and Nonlinear Physics"],"article_type":"original","volume":2022,"type":"journal_article","file":[{"success":1,"date_created":"2023-02-02T08:35:52Z","relation":"main_file","file_name":"2022_JourStatisticalMechanics_Mondelli.pdf","file_id":"12481","date_updated":"2023-02-02T08:35:52Z","content_type":"application/pdf","checksum":"01411ffa76d3e380a0446baeb89b1ef7","access_level":"open_access","creator":"dernst","file_size":1729997}],"language":[{"iso":"eng"}],"acknowledgement":"The authors would like to thank Andrea Montanari for helpful discussions.\r\nM Mondelli was partially supported by the 2019 Lopez-Loreta Prize. R Venkataramanan was partially supported by the Alan Turing Institute under the EPSRC Grant\r\nEP/N510129/1.","title":"Approximate message passing with spectral initialization for generalized linear models","article_number":"114003","day":"24","publication":"Journal of Statistical Mechanics: Theory and Experiment","publication_identifier":{"issn":["1742-5468"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"corr_author":"1","related_material":{"record":[{"id":"10598","relation":"earlier_version","status":"public"}]},"fulldoi":"https://doi.org/10.1088/1742-5468/ac9828","date_published":"2022-11-24T00:00:00Z","oa":1,"isi":1}]