[{"publication_status":"published","language":[{"iso":"eng"}],"volume":13,"department":[{"_id":"MaIb"}],"month":"02","article_processing_charge":"Yes","date_created":"2025-12-21T23:01:35Z","supplementarymaterial":"yes","quality_controlled":"1","project":[{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"scopus_import":"1","author":[{"first_name":"Xingqi","full_name":"Chang, Xingqi","last_name":"Chang"},{"last_name":"Escudero","full_name":"Escudero, Carlos","first_name":"Carlos"},{"first_name":"Ashley P.","full_name":"Black, Ashley P.","last_name":"Black"},{"full_name":"Horta, Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","last_name":"Horta","first_name":"Sharona"},{"first_name":"Elías","last_name":"Martínez","full_name":"Martínez, Elías"},{"first_name":"Xuan","last_name":"Lu","full_name":"Lu, Xuan"},{"full_name":"Llorca, Jordi","last_name":"Llorca","first_name":"Jordi"},{"first_name":"Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria"},{"first_name":"Jordi Jacas","last_name":"Biendicho","full_name":"Biendicho, Jordi Jacas"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"publication":"Advanced Science","type":"journal_article","doi":"10.1002/advs.202515962","oa":1,"title":"Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications","pmid":1,"publication_identifier":{"eissn":["2198-3844"]},"article_number":"e15962","oa_version":"Published Version","status":"public","_id":"20851","researchdata_availability":"upon request","publisher":"Wiley","citation":{"chicago":"Chang, Xingqi, Carlos Escudero, Ashley P. Black, Sharona Horta, Elías Martínez, Xuan Lu, Jordi Llorca, Maria Ibáñez, Jordi Jacas Biendicho, and Andreu Cabot. “Mitigating the Rock-Salt Phase Transformation in Disordered LNMO through Synergetic Solid-State AlF3/LiF Modifications.” <i>Advanced Science</i>. Wiley, 2026. <a href=\"https://doi.org/10.1002/advs.202515962\">https://doi.org/10.1002/advs.202515962</a>.","mla":"Chang, Xingqi, et al. “Mitigating the Rock-Salt Phase Transformation in Disordered LNMO through Synergetic Solid-State AlF3/LiF Modifications.” <i>Advanced Science</i>, vol. 13, no. 11, e15962, Wiley, 2026, doi:<a href=\"https://doi.org/10.1002/advs.202515962\">10.1002/advs.202515962</a>.","short":"X. Chang, C. Escudero, A.P. Black, S. Horta, E. Martínez, X. Lu, J. Llorca, M. Ibáñez, J.J. Biendicho, A. Cabot, Advanced Science 13 (2026).","ama":"Chang X, Escudero C, Black AP, et al. Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications. <i>Advanced Science</i>. 2026;13(11). doi:<a href=\"https://doi.org/10.1002/advs.202515962\">10.1002/advs.202515962</a>","ista":"Chang X, Escudero C, Black AP, Horta S, Martínez E, Lu X, Llorca J, Ibáñez M, Biendicho JJ, Cabot A. 2026. Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications. Advanced Science. 13(11), e15962.","apa":"Chang, X., Escudero, C., Black, A. P., Horta, S., Martínez, E., Lu, X., … Cabot, A. (2026). Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications. <i>Advanced Science</i>. Wiley. <a href=\"https://doi.org/10.1002/advs.202515962\">https://doi.org/10.1002/advs.202515962</a>","ieee":"X. Chang <i>et al.</i>, “Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications,” <i>Advanced Science</i>, vol. 13, no. 11. Wiley, 2026."},"year":"2026","acknowledgement":"This work was supported by the European Commission-financed project IntelLigent (HORIZON-CL5-2021-D2-01-02) with project ID number 101069765. In collaboration with ALBA staff, the operando SXRD and XAS experiments were performed at BL-16-NOTOS beamline at ALBA Synchrotron Light Source (experiment number: 2023097765). This research was supported by the Scientific Service Units (SSU) of the Institute of Science and Technology Austria (ISTA) through resources provided by the Electron Microscopy Facility (EMF) and the Nanofabrication Facility (NFF), and M.I. and S.H. acknowledge financial support from ISTA and the Werner Siemens Foundation. Jordi Jacas Biendicho acknowledges the fellowship RYC2021-034994-I, funded by MICIU/AEI/10.13039/501100011033 and the European Union «NextGenerationEU»/PRTR». Jordi Llorca is a Serra Húnter Fellow and is grateful to projects MICIN/AEI/FEDER PID2021-124572OB-C31 and Maria de Maeztu Units of Excellence Programme CEX2023-001300-M, and GC 2021 SGR 01061.","day":"23","das_tickbox":"1","dataavailabilitystatement":"The data that support the findings of this study are available from the corresponding author upon reasonable request","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NanoFab"}],"intvolume":"        13","file":[{"date_updated":"2026-07-23T06:15:51Z","content_type":"application/pdf","creator":"dernst","relation":"main_file","checksum":"37adc3eff9ad9f8f9b55cfe66883f36d","access_level":"open_access","file_name":"2026_AdvancedScience_Chang.pdf","file_size":6353217,"date_created":"2026-07-23T06:15:51Z","file_id":"22387","success":1}],"issue":"11","external_id":{"pmid":["41388041"]},"date_updated":"2026-07-23T06:18:43Z","file_date_updated":"2026-07-23T06:15:51Z","abstract":[{"text":"High-voltage disordered spinel LiNi0.5Mn1.5O4 is a promising cathode material for high power density in lithium-ion batteries. However, it suffers from poor cycle life associated with the rock-salt phase transformation. This study presents a straightforward synthesis approach to enhance the electrochemical performance of LiNi0.5Mn1.5O4 through a synergistic solid-state modification with LiF and AlF3. This dual modification promotes rapid Li⁺ diffusion, enables near-complete delithiation/lithiation, approaching the theoretical capacity of disordered LiNi0.5Mn1.5O4, and, more importantly, effectively mitigates the formation of the rock-salt phase, thereby enhancing structural stability, as confirmed by operando X-ray absorption spectroscopy (XAS) and synchrotron X-ray diffraction (SXRD). As a result, the optimized LiNi0.5Mn1.5O4 (10 mg AlF3 + 30 mg LiF) delivers high reversible capacities of 142.1, 139.1, 129.2, 121.6, 110.3, 93.5, and 76.1 mAh∙g−1 at 0.2C, 0.5C, 1.0C, 2.0C, 3.0C, 4.0C, and 5.0C, respectively. Full cells using graphite as the anode and a high-loading cathode exhibit excellent cycling performance. They retain 80% of their capacity after 200 cycles at 0.5C within a voltage window of 3.5–4.9 V with cathode loading of 11 mg∙cm−2. The findings of this study will significantly advance high-power LiNi0.5Mn1.5O4 materials, offering improved battery life and thereby enhancing their potential for practical applications.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"keyword":["disordered spinel LiNi0.5Mn1.5O4 (LNMO)","generation 3b batteries","operando SXRD","operando XAS","rock-salt","solid-state synthesis"],"fulldoi":"https://doi.org/10.1002/advs.202515962","article_type":"original","has_accepted_license":"1","OA_type":"gold","PlanS_conform":"1","date_published":"2026-02-23T00:00:00Z","ddc":["540"],"DOAJ_listed":"1","OA_place":"publisher"},{"publication_identifier":{"issn":["0092-8674"],"eissn":["1097-4172"]},"pmid":1,"oa":1,"title":"Multiscale integration of tissue and chromatin context converts cell heterogeneity into stable intestinal patterning","doi":"10.1016/j.cell.2026.06.009","type":"journal_article","corr_author":"1","scopus_import":"1","publication":"Cell","author":[{"first_name":"Cornelia","orcid":"0000-0001-5130-2226","full_name":"Schwayer, Cornelia","id":"3436488C-F248-11E8-B48F-1D18A9856A87","last_name":"Schwayer"},{"first_name":"Silvia","last_name":"Barbiero","full_name":"Barbiero, Silvia"},{"orcid":"0000-0001-7205-2975","first_name":"David","id":"e1e86031-6537-11eb-953a-f7ab92be508d","last_name":"Brückner","full_name":"Brückner, David"},{"last_name":"Oost","full_name":"Oost, Koen C.","first_name":"Koen C."},{"first_name":"Clara","full_name":"Baader, Clara","last_name":"Baader"},{"full_name":"Repina, Nicole A.","last_name":"Repina","first_name":"Nicole A."},{"first_name":"Jinse","full_name":"Kim, Jinse","last_name":"Kim"},{"first_name":"Oscar E.","full_name":"Diaz, Oscar E.","last_name":"Diaz"},{"first_name":"Isa","full_name":"Uccelli, Isa","last_name":"Uccelli"},{"first_name":"Laura","full_name":"Capolupo, Laura","last_name":"Capolupo"},{"first_name":"Ludivine Challet","last_name":"Meylan","full_name":"Meylan, Ludivine Challet"},{"last_name":"Kalck","full_name":"Kalck, Veronique","first_name":"Veronique"},{"first_name":"Franziska","full_name":"Moos, Franziska","last_name":"Moos"},{"last_name":"Suppinger","full_name":"Suppinger, Simon","first_name":"Simon"},{"full_name":"Yang, Qiutan","last_name":"Yang","first_name":"Qiutan"},{"first_name":"Jakob","last_name":"Schnabl","full_name":"Schnabl, Jakob"},{"first_name":"Umut","last_name":"Kilik","full_name":"Kilik, Umut"},{"full_name":"Bourdon, Matthieu","last_name":"Bourdon","first_name":"Matthieu"},{"full_name":"Camp, J. Gray","last_name":"Camp","first_name":"J. Gray"},{"last_name":"Stockinger","full_name":"Stockinger, Brigitta","first_name":"Brigitta"},{"last_name":"Ferrari","full_name":"Ferrari, Alessandra","first_name":"Alessandra"},{"first_name":"Marc","full_name":"Bühler, Marc","last_name":"Bühler"},{"last_name":"Stadler","full_name":"Stadler, Michael B.","first_name":"Michael B."},{"full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo","orcid":"0000-0001-6005-1561","first_name":"Edouard B"},{"last_name":"Liberali","full_name":"Liberali, Prisca","first_name":"Prisca"}],"date_created":"2026-09-17T11:06:12Z","supplementarymaterial":"yes","article_processing_charge":"Yes (in subscription journal)","project":[{"grant_number":"ALTF 343-2022","_id":"34e2a5b5-11ca-11ed-8bc3-b2265616ef0b","name":"A mechano-chemical theory for stem cell fate decisions in organoid development"},{"grant_number":"851288","call_identifier":"H2020","_id":"05943252-7A3F-11EA-A408-12923DDC885E","name":"Design Principles of Branching Morphogenesis"}],"quality_controlled":"1","page":"5266-5282.e17","volume":189,"language":[{"iso":"eng"}],"publication_status":"published","month":"08","ddc":["570"],"OA_type":"hybrid","date_published":"2026-08-20T00:00:00Z","has_accepted_license":"1","fulldoi":"https://doi.org/10.1016/j.cell.2026.06.009","article_type":"original","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"keyword":["tissue patterning","heterogeneity","mechanics","intestinal regeneration","epigenetic competence","multiscale integration","modeling","organoids","image-based phenotyping","Yap1"],"OA_place":"publisher","date_updated":"2026-10-01T08:42:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ec_funded":1,"file_date_updated":"2026-10-01T08:34:11Z","abstract":[{"text":"Tissue regeneration requires de novo patterning, which has been proposed to be facilitated by cellular heterogeneity. Yet how such heterogeneities are integrated with the mechanochemical state of the tissue and stabilized at the chromatin level into stable, spatially organized fates remains poorly understood. Using in vivo mouse intestinal regeneration models and organoids, we identify a critical density regime that produces a permissive window for heterogeneity in the mechanosensor Yes-associated protein 1 (YAP1). We show that YAP1 heterogeneity is coupled to lineage-biased chromatin accessibility and is decoded through FOXA1, which integrates the permissive chromatin state to Delta-Notch supracellular feedback and lineage commitment. This circuit generates fate bistability and preserves a memory of transient YAP1 activity, thereby maintaining spatial patterning as tissues return to homeostasis after injury. Together, our findings establish a multiscale framework in which tissue-scale mechanics tune single-cell competence and, through FOXA1-mediated bistability, convert transient heterogeneity into stable and self-organized tissue architecture.","lang":"eng"}],"dataavailabilitystatement":"All sequencing data have been deposited at the Gene Expression Omnibus (GEO) under accession number GEO: GSE283662.\r\nAnalysis of imaging and sequencing data was developed in the Liberali lab and is available at https://github.com/LiberaliLab/symmetry-breaking-2026. Detailed information on the packages used is provided in the STAR Methods section.\r\nAny additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.","external_id":{"pmid":["42379166"]},"issue":"17","file":[{"relation":"main_file","access_level":"open_access","checksum":"3ff0f4f8be0e79940ba11b18af318ae3","creator":"dernst","content_type":"application/pdf","date_updated":"2026-10-01T08:34:11Z","file_id":"23014","success":1,"date_created":"2026-10-01T08:34:11Z","file_size":15536364,"file_name":"2026_Cell_Schwayer.pdf"}],"intvolume":"       189","_id":"22956","status":"public","researchdata_availability":"yes","oa_version":"Published Version","das_tickbox":"1","day":"20","year":"2026","citation":{"apa":"Schwayer, C., Barbiero, S., Brückner, D., Oost, K. C., Baader, C., Repina, N. A., … Liberali, P. (2026). Multiscale integration of tissue and chromatin context converts cell heterogeneity into stable intestinal patterning. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2026.06.009\">https://doi.org/10.1016/j.cell.2026.06.009</a>","ieee":"C. Schwayer <i>et al.</i>, “Multiscale integration of tissue and chromatin context converts cell heterogeneity into stable intestinal patterning,” <i>Cell</i>, vol. 189, no. 17. Cell Press, p. 5266–5282.e17, 2026.","ama":"Schwayer C, Barbiero S, Brückner D, et al. Multiscale integration of tissue and chromatin context converts cell heterogeneity into stable intestinal patterning. <i>Cell</i>. 2026;189(17):5266-5282.e17. doi:<a href=\"https://doi.org/10.1016/j.cell.2026.06.009\">10.1016/j.cell.2026.06.009</a>","ista":"Schwayer C, Barbiero S, Brückner D, Oost KC, Baader C, Repina NA, Kim J, Diaz OE, Uccelli I, Capolupo L, Meylan LC, Kalck V, Moos F, Suppinger S, Yang Q, Schnabl J, Kilik U, Bourdon M, Camp JG, Stockinger B, Ferrari A, Bühler M, Stadler MB, Hannezo EB, Liberali P. 2026. Multiscale integration of tissue and chromatin context converts cell heterogeneity into stable intestinal patterning. Cell. 189(17), 5266–5282.e17.","short":"C. Schwayer, S. Barbiero, D. Brückner, K.C. Oost, C. Baader, N.A. Repina, J. Kim, O.E. Diaz, I. Uccelli, L. Capolupo, L.C. Meylan, V. Kalck, F. Moos, S. Suppinger, Q. Yang, J. Schnabl, U. Kilik, M. Bourdon, J.G. Camp, B. Stockinger, A. Ferrari, M. Bühler, M.B. Stadler, E.B. Hannezo, P. Liberali, Cell 189 (2026) 5266–5282.e17.","mla":"Schwayer, Cornelia, et al. “Multiscale Integration of Tissue and Chromatin Context Converts Cell Heterogeneity into Stable Intestinal Patterning.” <i>Cell</i>, vol. 189, no. 17, Cell Press, 2026, p. 5266–5282.e17, doi:<a href=\"https://doi.org/10.1016/j.cell.2026.06.009\">10.1016/j.cell.2026.06.009</a>.","chicago":"Schwayer, Cornelia, Silvia Barbiero, David Brückner, Koen C. Oost, Clara Baader, Nicole A. Repina, Jinse Kim, et al. “Multiscale Integration of Tissue and Chromatin Context Converts Cell Heterogeneity into Stable Intestinal Patterning.” <i>Cell</i>. Cell Press, 2026. <a href=\"https://doi.org/10.1016/j.cell.2026.06.009\">https://doi.org/10.1016/j.cell.2026.06.009</a>."},"acknowledgement":"We thank the Liberali group, M. Verbeek, and C. Soneson for fruitful discussions; E. Tagliavini for IT support; J. Lüthi for Fractal support; H. Köhler for FACS sorting; T.O. Buchholz for help on cell segmentation; B. Treutlein and A. Xavier da Silveira dos Santos for help with library preparation of single-cell ATAC-seq; M. Garioni for help with mouse salivary organoids; M. Kahnwald for help with human intestinal organoids; M. Lütolf, M. Nikolaev, and O. Mitrofanova for providing material and initial training for microwell experiments; J. Tchorz and V. Orsini for intestinal tissue sections of the YAP1 activator experiment in homeostasis; R. Kageyama for DLL1-Venus-T2A-mCherry mice; J.-F. Spetz for technical assistance; C. Lambert and N. Accart for help with sample preparation; Claudia Flandoli for graphic design of schemes; and Zuzana Nascakova for the graphical abstract. We thank the Foundation Hubrecht Organoid Technology (now Foundation Hubrecht Organoid Biobank, https://www.hubrechtorganoidbiobank.org/) for the duodenal organoid line used in this study (HUB-04-A2-001). We thank C.P. Heisenberg, M. Lütolf, C. Tsiairis, J. Zaugg, G. D’Angelo, L. Giorgetti, S. Arber, and the Liberali group for reading the manuscript. C.S. was supported by the European Molecular Biology Organization (Postdoctoral Fellowship ALTF 660-2020) and the Human Frontier Science Program (HFSP) LT000746/2021-L. D.B.B. was supported by the NOMIS Foundation as a NOMIS fellow, an EMBO Postdoctoral Fellowship (ALTF 343-2022), and the Austrian Academy of Sciences through an APART-MINT Fellowship. B.S. was supported by the Francis Crick Institute, which receives its core funding from Cancer Research UK, the UK Medical Research Council, and the Wellcome Trust (FC001159). This work received funding from ERC to E.H. (grant number 851288) and to P.L. (grant number 758617) and from SNSF (310030_208162 and SNSF ERC TMCG-3_223263).","publisher":"Cell Press"},{"month":"09","publication_status":"epub_ahead","language":[{"iso":"eng"}],"department":[{"_id":"PaSc"}],"volume":"156-157","quality_controlled":"1","project":[{"name":"AlloSpace. The emergence and mechanisms of allostery","_id":"eb9c82eb-77a9-11ec-83b8-aadd536561cf","grant_number":"I05812"}],"article_processing_charge":"Yes (via OA deal)","date_created":"2026-09-22T05:44:22Z","supplementarymaterial":"yes","author":[{"id":"71cda2f3-e604-11ee-a1df-da10587eda3f","last_name":"Tatman","full_name":"Tatman, Benjamin","first_name":"Benjamin"},{"first_name":"Paul","orcid":"0000-0002-9350-7606","last_name":"Schanda","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","full_name":"Schanda, Paul"}],"publication":"Progress in Nuclear Magnetic Resonance Spectroscopy","scopus_import":"1","corr_author":"1","article_number":"101615","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.pnmrs.2026.101615"}],"doi":"10.1016/j.pnmrs.2026.101615","oa":1,"title":"Quantifying fast protein dynamics by magic-angle spinning NMR: Progress in experimental and analytical approaches","publication_identifier":{"issn":["0079-6565"],"eissn":["1873-3301"]},"publisher":"Elsevier","acknowledgement":"We thank the Austrian Science Fund (FWF, project number 10.55776/I5812) for support. We are grateful to Petra Rovó (ISTA) for many insightful discussions.","year":"2026","citation":{"mla":"Tatman, Benjamin, and Paul Schanda. “Quantifying Fast Protein Dynamics by Magic-Angle Spinning NMR: Progress in Experimental and Analytical Approaches.” <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>, vol. 156–157, 101615, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.pnmrs.2026.101615\">10.1016/j.pnmrs.2026.101615</a>.","short":"B. Tatman, P. Schanda, Progress in Nuclear Magnetic Resonance Spectroscopy 156–157 (2026).","chicago":"Tatman, Benjamin, and Paul Schanda. “Quantifying Fast Protein Dynamics by Magic-Angle Spinning NMR: Progress in Experimental and Analytical Approaches.” <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.pnmrs.2026.101615\">https://doi.org/10.1016/j.pnmrs.2026.101615</a>.","apa":"Tatman, B., &#38; Schanda, P. (2026). Quantifying fast protein dynamics by magic-angle spinning NMR: Progress in experimental and analytical approaches. <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.pnmrs.2026.101615\">https://doi.org/10.1016/j.pnmrs.2026.101615</a>","ieee":"B. Tatman and P. Schanda, “Quantifying fast protein dynamics by magic-angle spinning NMR: Progress in experimental and analytical approaches,” <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>, vol. 156–157. Elsevier, 2026.","ista":"Tatman B, Schanda P. 2026. Quantifying fast protein dynamics by magic-angle spinning NMR: Progress in experimental and analytical approaches. Progress in Nuclear Magnetic Resonance Spectroscopy. 156–157, 101615.","ama":"Tatman B, Schanda P. Quantifying fast protein dynamics by magic-angle spinning NMR: Progress in experimental and analytical approaches. <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>. 2026;156-157. doi:<a href=\"https://doi.org/10.1016/j.pnmrs.2026.101615\">10.1016/j.pnmrs.2026.101615</a>"},"day":"01","das_tickbox":"1","oa_version":"Published Version","_id":"22974","status":"public","researchdata_availability":"no","dataavailabilitystatement":"No data was used for the research described in the article.","abstract":[{"lang":"eng","text":"Far from being static structures, it is now well accepted that proteins are highly dynamic entities even in the solid state. Here, we review recent progress in application of magic-angle spinning (MAS) NMR for studying the site-specific dynamics of proteins, as assessed using spin-relaxation and measurement of anisotropic spin interactions. We focus on the types of experimental data that are available, and how best to access the information which is provided by these experimental measurements; in particular, we provide a retrospective on the field in light of recent advances in analytical methodologies, which have led to a slow paradigm shift in how we interpret relaxation rate constant measurements made in the solid state."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-10-06T13:00:47Z","OA_place":"publisher","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"keyword":["Solid-state NMR","Protein dynamics","Magic-angle spinning"],"article_type":"original","fulldoi":"https://doi.org/10.1016/j.pnmrs.2026.101615","OA_type":"hybrid","has_accepted_license":"1","date_published":"2026-09-01T00:00:00Z","ddc":["540"]},{"alternative_title":["ISTA Thesis"],"date_updated":"2026-10-20T09:03:21Z","file_date_updated":"2026-07-13T14:56:41Z","abstract":[{"lang":"eng","text":"Uncovering the genetic architecture of complex traits and pinpointing causal molecular drivers require the ability to distinguish true signals from noise within massive, high-dimensional omics datasets. To extract meaningful biological insights from these datasets, such as identifying causal genetic variants and proteins, scalable and accurate inference methods are essential. To this end, this thesis develops novel Bayesian inference frameworks based on Vector Approximate Message Passing and demonstrates their effectiveness in the modeling of disease onset times and quantitative physical and clinical measures.\r\n\r\nFirst, we introduce gVAMP, a Bayesian framework tailored for Genome-Wide Association Studies that enables the joint modeling of quantitative complex traits across millions of genetic variants. gVAMP demonstrates superior accuracy in variable selection and out-of-sample polygenic risk prediction compared to state-of-the-art approaches. We model human height using 17 million whole-genome sequence variants from the UK Biobank, incorporating a vast number of rare variants and revealing novel associations. gVAMP achieves a prediction accuracy of approximately 46% for human height, representing the highest reported performance for this trait to date. \r\n\r\nSecond, we present vampW, a Bayesian framework for survival analysis applied to proteomic data. By effectively handling right-censoring and complex protein dependencies within the UK Biobank Pharma Proteomics Project dataset, vampW identifies 219 protein associations across 24 disease outcomes, the majority of which are not among the top marginal discoveries. We further adjust protein levels for exponential age effects, yielding 1,308 associations and highlighting the sensitivity of the analysis to the chosen age-correction methodology. Finally, vampW improves upon the variable selection capabilities of the commonly used (penalized) variants of the Cox proportional hazards model and delivers state-of-the-art out-of-sample prediction of disease onset times.\r\n\r\nCollectively, these methods provide powerful tools for dissecting the genetic architecture of complex traits and the proteomic drivers of disease onset. Furthermore, by delivering accurate polygenic risk scores and precise predictions of onset times, this work advances the capabilities of personalized medicine and clinical risk stratification."}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","fulldoi":"https://doi.org/10.15479/AT-ISTA-22258","keyword":["Approximate Message Passing","GWAS","Genomics","Proteomics","Survival modeling"],"ddc":["576","610","006"],"date_published":"2026-07-11T00:00:00Z","has_accepted_license":"1","OA_place":"publisher","oa_version":"Published Version","status":"public","_id":"22258","year":"2026","citation":{"short":"A. Depope, From Sparse Selection to Risk Prediction: Approximate Message Passing for Proteomic Survival Models and Large-Scale Genomics, Institute of Science and Technology Austria, 2026.","mla":"Depope, Al. <i>From Sparse Selection to Risk Prediction: Approximate Message Passing for Proteomic Survival Models and Large-Scale Genomics</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22258\">10.15479/AT-ISTA-22258</a>.","chicago":"Depope, Al. “From Sparse Selection to Risk Prediction: Approximate Message Passing for Proteomic Survival Models and Large-Scale Genomics.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-22258\">https://doi.org/10.15479/AT-ISTA-22258</a>.","apa":"Depope, A. (2026). <i>From sparse selection to risk prediction: Approximate message passing for proteomic survival models and large-scale genomics</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-22258\">https://doi.org/10.15479/AT-ISTA-22258</a>","ieee":"A. Depope, “From sparse selection to risk prediction: Approximate message passing for proteomic survival models and large-scale genomics,” Institute of Science and Technology Austria, 2026.","ista":"Depope A. 2026. From sparse selection to risk prediction: Approximate message passing for proteomic survival models and large-scale genomics. Institute of Science and Technology Austria.","ama":"Depope A. From sparse selection to risk prediction: Approximate message passing for proteomic survival models and large-scale genomics. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22258\">10.15479/AT-ISTA-22258</a>"},"acknowledgement":"This work was supported in part by the Swiss National Science Foundation through the\r\nEccellenza Grant \"Improving estimation and prediction of common complex disease risk\"\r\n(grant number PCEGP3_181181); the European Research Council through the grant\r\n\"Inference in High Dimensions: Light-speed Algorithms and Information Limits\" (grant\r\nnumber 101161364); and the Fondation Jean-Jacques et Felicia Lopez-Loreta through the\r\nPrix Lopez-Loretta 2019.\r\n","publisher":"Institute of Science and Technology Austria","das_tickbox":"1","day":"11","supervisor":[{"full_name":"Robinson, Matthew Richard","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","last_name":"Robinson","orcid":"0000-0001-8982-8813","first_name":"Matthew Richard"},{"full_name":"Mondelli, Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","last_name":"Mondelli","orcid":"0000-0002-3242-7020","first_name":"Marco"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"file":[{"access_level":"open_access","checksum":"9ab386790515628d957a194f30a7ccb4","relation":"main_file","creator":"adepope","content_type":"application/pdf","date_updated":"2026-07-13T14:52:19Z","file_id":"22316","date_created":"2026-07-13T14:52:19Z","file_size":25109878,"file_name":"2026_Depope_Al_Thesis.pdf"},{"checksum":"8ed8fb63f76a695d5b6fec35343f4b90","access_level":"closed","relation":"source_file","date_updated":"2026-07-13T14:56:41Z","content_type":"application/zip","creator":"adepope","file_id":"22317","file_name":"2026_Depope_Al_Thesis.zip","file_size":1203199939,"date_created":"2026-07-13T14:56:41Z"}],"corr_author":"1","author":[{"id":"0b77531d-dbcd-11ea-9d1d-a8eee0bf3830","last_name":"Depope","full_name":"Depope, Al","first_name":"Al"}],"doi":"10.15479/AT-ISTA-22258","type":"dissertation","publication_identifier":{"issn":["2663-337X"]},"title":"From sparse selection to risk prediction: Approximate message passing for proteomic survival models and large-scale genomics","oa":1,"doi_confirm":"1","department":[{"_id":"GradSch"},{"_id":"MaRo"},{"_id":"MaMo"}],"language":[{"iso":"eng"}],"publication_status":"published","page":"169","month":"07","date_created":"2026-07-10T13:27:20Z","article_processing_charge":"No","related_material":{"record":[{"id":"21488","relation":"part_of_dissertation","status":"public"}]},"degree_awarded":"PhD","project":[{"name":"Prix Lopez-Loretta 2019 - Marco Mondelli","_id":"059876FA-7A3F-11EA-A408-12923DDC885E"},{"grant_number":"101161364","_id":"911e6d1f-16d5-11f0-9cad-c5c68c6a1cdf","name":"Inference in High Dimensions: Light-speed Algorithms and Information Limits"},{"grant_number":"PCEGP3_181181","_id":"9B8D11D6-BA93-11EA-9121-9846C619BF3A","name":"Improving estimation and prediction of common complex disease risk"}]},{"article_type":"original","fulldoi":"https://doi.org/10.1111/gcb.16995","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"keyword":["Aerodynamic effects","Bushfires Australia","Ecohydrological modeling","Eddy covariancemeasurements","Eucalyptus regnans","Forest evapotranspiration","Forest recovery","Mountain Ash","TERN OzFlux","Wildfires"],"OA_type":"hybrid","date_published":"2024-01-01T00:00:00Z","OA_place":"publisher","date_updated":"2026-08-11T05:51:07Z","abstract":[{"lang":"eng","text":"Wildfires are increasing in frequency, intensity, and extent globally due to climate change and they can alter forest composition, structure, and function. The destruction and subsequent regrowth of young vegetation can modify the ecosystem evapotranspiration and downstream water availability. However, the response of forest recovery on hydrology is not well known with even the sign of evapotranspiration and water yield changes following forest fires being uncertain across the globe. Here, we quantify the effects of forest regrowth after catastrophic wildfires on evapotranspiration and runoff in the world's tallest angiosperm forest (Eucalyptus regnans) in Australia. We combine eddy covariance measurements including pre- and post-fire periods, mechanistic ecohydrological modeling and then extend the analysis spatially to multiple fires in eucalypt-dominated forests in south-eastern Australia by utilizing remote sensing. We find a fast recovery of evapotranspiration which reaches and exceeds pre-fire values within 2 years after the bushfire, a result confirmed by eddy covariance data, remote sensing, and modeling. Such a fast evapotranspiration recovery is likely generalizable to tall eucalypt forests in south-eastern Australia as shown by remote sensing. Once climate variability is discounted, ecohydrological modeling shows evapotranspiration rates from the recovering forest which reach peak values of +20% evapotranspiration 3 years post-fire. As a result, modeled runoff decreases substantially. Contrary to previous research, we find that the increase in modeled evapotranspiration is largely caused by the aerodynamic effects of a much shorter forest height leading to higher surface temperature, higher humidity gradients and therefore increased transpiration. However, increases in evapotranspiration as well as decreases in runoff caused by the young forest are constrained by energy and water limitations. Our result of an increase in evapotranspiration due to aerodynamic warming in a shorter forest after wildfires could occur in many parts of the world experiencing forest disturbances."}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","intvolume":"        30","external_id":{"pmid":["37916642"]},"issue":"1","oa_version":"Published Version","status":"public","_id":"22511","citation":{"ama":"Meili N, Beringer J, Zhao J, Fatichi S. Aerodynamic effects cause higher forest evapotranspiration and water yield reductions after wildfires in tall forests. <i>Global Change Biology</i>. 2024;30(1). doi:<a href=\"https://doi.org/10.1111/gcb.16995\">10.1111/gcb.16995</a>","ista":"Meili N, Beringer J, Zhao J, Fatichi S. 2024. Aerodynamic effects cause higher forest evapotranspiration and water yield reductions after wildfires in tall forests. Global Change Biology. 30(1), e16995.","ieee":"N. Meili, J. Beringer, J. Zhao, and S. Fatichi, “Aerodynamic effects cause higher forest evapotranspiration and water yield reductions after wildfires in tall forests,” <i>Global Change Biology</i>, vol. 30, no. 1. Wiley, 2024.","apa":"Meili, N., Beringer, J., Zhao, J., &#38; Fatichi, S. (2024). Aerodynamic effects cause higher forest evapotranspiration and water yield reductions after wildfires in tall forests. <i>Global Change Biology</i>. Wiley. <a href=\"https://doi.org/10.1111/gcb.16995\">https://doi.org/10.1111/gcb.16995</a>","chicago":"Meili, Naika, Jason Beringer, Jiacheng Zhao, and Simone Fatichi. “Aerodynamic Effects Cause Higher Forest Evapotranspiration and Water Yield Reductions after Wildfires in Tall Forests.” <i>Global Change Biology</i>. Wiley, 2024. <a href=\"https://doi.org/10.1111/gcb.16995\">https://doi.org/10.1111/gcb.16995</a>.","short":"N. Meili, J. Beringer, J. Zhao, S. Fatichi, Global Change Biology 30 (2024).","mla":"Meili, Naika, et al. “Aerodynamic Effects Cause Higher Forest Evapotranspiration and Water Yield Reductions after Wildfires in Tall Forests.” <i>Global Change Biology</i>, vol. 30, no. 1, e16995, Wiley, 2024, doi:<a href=\"https://doi.org/10.1111/gcb.16995\">10.1111/gcb.16995</a>."},"year":"2024","publisher":"Wiley","day":"01","das_tickbox":"1","main_file_link":[{"url":"https://doi.org/10.1111/gcb.16995","open_access":"1"}],"doi":"10.1111/gcb.16995","type":"journal_article","publication_identifier":{"eissn":["1365-2486"],"issn":["1354-1013"]},"pmid":1,"title":"Aerodynamic effects cause higher forest evapotranspiration and water yield reductions after wildfires in tall forests","oa":1,"extern":"1","article_number":"e16995","scopus_import":"1","author":[{"last_name":"Meili","full_name":"Meili, Naika","first_name":"Naika"},{"full_name":"Beringer, Jason","last_name":"Beringer","first_name":"Jason"},{"last_name":"Zhao","full_name":"Zhao, Jiacheng","first_name":"Jiacheng"},{"id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","last_name":"Fatichi","full_name":"Fatichi, Simone","first_name":"Simone"}],"publication":"Global Change Biology","date_created":"2026-07-27T12:30:24Z","article_processing_charge":"No","quality_controlled":"1","volume":30,"language":[{"iso":"eng"}],"publication_status":"published","month":"01"},{"isi":1,"das_tickbox":"0","day":"01","publisher":"Association for Computing Machinery","citation":{"short":"P. Synak, A. Kalinov, I.-M. Strugaru, A. Etemadi, H. Yang, C. Wojtan, ACM Transactions on Graphics 43 (2024).","mla":"Synak, Peter, et al. “Multi-Material Mesh-Based Surface Tracking with Implicit Topology Changes.” <i>ACM Transactions on Graphics</i>, vol. 43, no. 4, 54, Association for Computing Machinery, 2024, doi:<a href=\"https://doi.org/10.1145/3658223\">10.1145/3658223</a>.","chicago":"Synak, Peter, Aleksei Kalinov, Irina-Malina Strugaru, Arian Etemadi, Huidong Yang, and Chris Wojtan. “Multi-Material Mesh-Based Surface Tracking with Implicit Topology Changes.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2024. <a href=\"https://doi.org/10.1145/3658223\">https://doi.org/10.1145/3658223</a>.","ieee":"P. Synak, A. Kalinov, I.-M. Strugaru, A. Etemadi, H. Yang, and C. Wojtan, “Multi-material mesh-based surface tracking with implicit topology changes,” <i>ACM Transactions on Graphics</i>, vol. 43, no. 4. Association for Computing Machinery, 2024.","apa":"Synak, P., Kalinov, A., Strugaru, I.-M., Etemadi, A., Yang, H., &#38; Wojtan, C. (2024). Multi-material mesh-based surface tracking with implicit topology changes. <i>ACM Transactions on Graphics</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3658223\">https://doi.org/10.1145/3658223</a>","ista":"Synak P, Kalinov A, Strugaru I-M, Etemadi A, Yang H, Wojtan C. 2024. Multi-material mesh-based surface tracking with implicit topology changes. ACM Transactions on Graphics. 43(4), 54.","ama":"Synak P, Kalinov A, Strugaru I-M, Etemadi A, Yang H, Wojtan C. Multi-material mesh-based surface tracking with implicit topology changes. <i>ACM Transactions on Graphics</i>. 2024;43(4). doi:<a href=\"https://doi.org/10.1145/3658223\">10.1145/3658223</a>"},"year":"2024","acknowledgement":"Peter Heiss-Synak helped conceive the project, helped formulate the algorithm structure, contributed ideas and code to Sections 6 & 8, the mesh data structure, algorithm robustness and benchmarks, helped write the paper, and provided supervision and conceptual solutions throughout the project. Aleksei Kalinov contributed ideas and code to Sections 7, 8.5, and 5, the sparse grid data structure, algorithm robustness and benchmarks, optimized the performance, produced all results, most figures, and the supplementary video, helped write the text, and provided conceptual solutions throughout the project. Malina Strugaru helped implement the mesh data structure and designed re-meshing operations for non-manifold triangle meshes. Arian Etemadi developed early prototypes for ideas in Sections 8.1 and 8.3 and helped write the paper. Huidong Yang developed early prototypes for isosurface extraction and visualization. Chris Wojtan helped conceive the project, helped write the paper, and provided supervision, prototype grid data structure code, and conceptual solutions throughout the project. We thank the anonymous reviewers for their helpful comments, the members of the Visual Computing Group at ISTA for their feedback, Christopher Batty for discussions about LosTopos, and SideFX for the Houdini Education software licenses.  This research was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA).","_id":"17219","status":"public","researchdata_availability":"no","oa_version":"Published Version","issue":"4","external_id":{"isi":["001289270900021"]},"intvolume":"        43","file":[{"relation":"main_file","checksum":"1917067d4b52d7729019b03560004e43","access_level":"open_access","content_type":"application/pdf","date_updated":"2024-07-23T06:35:15Z","creator":"dernst","file_id":"17317","success":1,"file_name":"2024_ACMToG_HeissSynak.pdf","file_size":48763368,"date_created":"2024-07-23T06:35:15Z"},{"relation":"main_file","checksum":"a4f0e293184bfa034c0c585848806b17","access_level":"open_access","content_type":"video/mp4","date_updated":"2024-07-10T12:23:44Z","creator":"akalinov","file_id":"17221","success":1,"file_name":"sdtopofixer_final.mp4","date_created":"2024-07-10T12:23:44Z","file_size":48021463},{"file_name":"SuperDuperTopoFixer.pdf","title":"Authors' version of the text","file_size":48639581,"date_created":"2025-11-11T09:50:52Z","file_id":"20633","content_type":"application/pdf","date_updated":"2025-11-11T09:50:52Z","creator":"akalinov","relation":"preprint","checksum":"18fc310a78ec91651148c45a8b89fa44","access_level":"open_access"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file_date_updated":"2025-11-11T09:50:52Z","abstract":[{"text":"We introduce a multi-material non-manifold mesh-based surface tracking algorithm that converts self-intersections into topological changes. Our algorithm generalizes prior work on manifold surface tracking with topological changes: it preserves surface features like mesh-based methods, and it robustly handles topological changes like level set methods. Our method also offers improved efficiency and robustness over the state of the art. We demonstrate the effectiveness of the approach on a range of examples, including complex soap film simulations with thousands of interacting bubbles, and boolean unions of non-manifold meshes consisting of millions of triangles.","lang":"eng"}],"date_updated":"2026-10-02T11:19:25Z","OA_place":"publisher","has_accepted_license":"1","OA_type":"hybrid","date_published":"2024-07-01T00:00:00Z","ddc":["004"],"keyword":["surface tracking","topology change","non- manifold meshes","multi-material flows","solid modeling"],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png"},"fulldoi":"https://doi.org/10.1145/3658223","article_type":"original","month":"07","publication_status":"published","volume":43,"department":[{"_id":"GradSch"},{"_id":"ChWo"}],"language":[{"iso":"eng"}],"project":[{"grant_number":"101045083","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088"}],"quality_controlled":"1","related_material":{"record":[{"id":"19630","relation":"dissertation_contains","status":"public"},{"relation":"dissertation_contains","id":"18301","status":"public"}]},"article_processing_charge":"Yes (via OA deal)","date_created":"2024-07-10T12:24:00Z","supplementarymaterial":"no","publication":"ACM Transactions on Graphics","author":[{"last_name":"Synak","id":"331776E2-F248-11E8-B48F-1D18A9856A87","full_name":"Synak, Peter","first_name":"Peter"},{"orcid":"0000-0003-2189-3904","first_name":"Aleksei","full_name":"Kalinov, Aleksei","last_name":"Kalinov","id":"44b7120e-eb97-11eb-a6c2-e1557aa81d02"},{"last_name":"Strugaru","id":"2afc607f-f128-11eb-9611-8f2a0dfcf074","full_name":"Strugaru, Irina-Malina","first_name":"Irina-Malina"},{"first_name":"Arian","full_name":"Etemadihaghighi, Arian","last_name":"Etemadihaghighi","id":"36cea3aa-f38e-11ec-8ae0-c65ae6f6098f"},{"last_name":"Yang","full_name":"Yang, Huidong","first_name":"Huidong"},{"full_name":"Wojtan, Christopher J","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","last_name":"Wojtan","orcid":"0000-0001-6646-5546","first_name":"Christopher J"}],"corr_author":"1","scopus_import":"1","article_number":"54","title":"Multi-material mesh-based surface tracking with implicit topology changes","oa":1,"publication_identifier":{"issn":["0730-0301"],"eissn":["1557-7368"]},"type":"journal_article","doi":"10.1145/3658223"},{"author":[{"first_name":"Arian","last_name":"Etemadihaghighi","id":"36cea3aa-f38e-11ec-8ae0-c65ae6f6098f","full_name":"Etemadihaghighi, Arian"}],"corr_author":"1","doi_confirm":"1","doi":"10.15479/at:ista:18301","type":"dissertation","publication_identifier":{"issn":["2791-4585"]},"oa":1,"title":"Filling the holes of non-manifold self-intersecting meshes for implicit topology changes in surface tracking","month":"10","language":[{"iso":"eng"}],"department":[{"_id":"GradSch"},{"_id":"ChWo"}],"publication_status":"published","page":"39","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"17219"}]},"degree_awarded":"MS","supplementarymaterial":"no","date_created":"2024-10-11T19:52:20Z","article_processing_charge":"No","file_date_updated":"2024-10-24T14:34:54Z","abstract":[{"text":"Physics simulation in computer graphics can bring triangle meshes into topologically invalid states. The method in this thesis contributed to Heiss-Synak* and Kalinov* et al. [2024] who devised a non-manifold hybrid surface tracker—a surface tracker that repairs explicit non-manifold triangle meshes with the help of the implicit domain. Specifically, this thesis provides an algorithm for filling the holes that are left after removing problematic parts of the mesh.","lang":"eng"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_updated":"2026-10-02T11:19:26Z","alternative_title":["ISTA Master's Thesis"],"OA_place":"publisher","fulldoi":"https://doi.org/10.15479/at:ista:18301","tmp":{"name":"Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0)","short":"CC BY-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","image":"/images/cc_by_sa.png"},"keyword":["surface tracking","non-manifold","hole-filling","topology change","multi-material","solid-modeling"],"ddc":["000"],"has_accepted_license":"1","date_published":"2024-10-15T00:00:00Z","citation":{"ama":"Etemadi A. Filling the holes of non-manifold self-intersecting meshes for implicit topology changes in surface tracking. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:18301\">10.15479/at:ista:18301</a>","ista":"Etemadi A. 2024. Filling the holes of non-manifold self-intersecting meshes for implicit topology changes in surface tracking. Institute of Science and Technology Austria.","ieee":"A. Etemadi, “Filling the holes of non-manifold self-intersecting meshes for implicit topology changes in surface tracking,” Institute of Science and Technology Austria, 2024.","apa":"Etemadi, A. (2024). <i>Filling the holes of non-manifold self-intersecting meshes for implicit topology changes in surface tracking</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:18301\">https://doi.org/10.15479/at:ista:18301</a>","chicago":"Etemadi, Arian. “Filling the Holes of Non-Manifold Self-Intersecting Meshes for Implicit Topology Changes in Surface Tracking.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:18301\">https://doi.org/10.15479/at:ista:18301</a>.","short":"A. Etemadi, Filling the Holes of Non-Manifold Self-Intersecting Meshes for Implicit Topology Changes in Surface Tracking, Institute of Science and Technology Austria, 2024.","mla":"Etemadi, Arian. <i>Filling the Holes of Non-Manifold Self-Intersecting Meshes for Implicit Topology Changes in Surface Tracking</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:18301\">10.15479/at:ista:18301</a>."},"year":"2024","publisher":"Institute of Science and Technology Austria","das_tickbox":"0","day":"15","supervisor":[{"full_name":"Wojtan, Christopher J","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","last_name":"Wojtan","first_name":"Christopher J","orcid":"0000-0001-6646-5546"}],"oa_version":"Published Version","researchdata_availability":"no","_id":"18301","status":"public","file":[{"date_created":"2024-10-24T14:34:42Z","file_size":8914218,"file_name":"thesis-arian-etemadi.pdf","file_id":"18469","success":1,"creator":"aetemadi","date_updated":"2024-10-24T14:34:42Z","content_type":"application/pdf","relation":"main_file","access_level":"open_access","checksum":"80fb7923e229ad9d39253d7c8a8083d0"},{"relation":"source_file","access_level":"closed","checksum":"1c02586ed7d441d5ec441867650568d1","creator":"aetemadi","content_type":"application/x-zip-compressed","date_updated":"2024-10-24T14:34:54Z","file_id":"18470","file_size":9802650,"date_created":"2024-10-24T14:34:54Z","file_name":"thesis-arian-etemadi-latex-source.zip"}]},{"oa_version":"Published Version","_id":"12178","status":"public","researchdata_availability":"not applicable","year":"2024","citation":{"ama":"Agresti A, Hieber M, Hussein A, Saal M. The stochastic primitive equations with transport noise and turbulent pressure. <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. 2024;12:53-133. doi:<a href=\"https://doi.org/10.1007/s40072-022-00277-3\">10.1007/s40072-022-00277-3</a>","ista":"Agresti A, Hieber M, Hussein A, Saal M. 2024. The stochastic primitive equations with transport noise and turbulent pressure. Stochastics and Partial Differential Equations: Analysis and Computations. 12, 53–133.","ieee":"A. Agresti, M. Hieber, A. Hussein, and M. Saal, “The stochastic primitive equations with transport noise and turbulent pressure,” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>, vol. 12. Springer Nature, pp. 53–133, 2024.","apa":"Agresti, A., Hieber, M., Hussein, A., &#38; Saal, M. (2024). The stochastic primitive equations with transport noise and turbulent pressure. <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40072-022-00277-3\">https://doi.org/10.1007/s40072-022-00277-3</a>","chicago":"Agresti, Antonio, Matthias Hieber, Amru Hussein, and Martin Saal. “The Stochastic Primitive Equations with Transport Noise and Turbulent Pressure.” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s40072-022-00277-3\">https://doi.org/10.1007/s40072-022-00277-3</a>.","short":"A. Agresti, M. Hieber, A. Hussein, M. Saal, Stochastics and Partial Differential Equations: Analysis and Computations 12 (2024) 53–133.","mla":"Agresti, Antonio, et al. “The Stochastic Primitive Equations with Transport Noise and Turbulent Pressure.” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>, vol. 12, Springer Nature, 2024, pp. 53–133, doi:<a href=\"https://doi.org/10.1007/s40072-022-00277-3\">10.1007/s40072-022-00277-3</a>."},"acknowledgement":"The authors thank the anonymous referees for their helpful comments and suggestions. Open Access funding enabled and organized by Projekt DEAL.","publisher":"Springer Nature","day":"01","arxiv":1,"das_tickbox":"1","isi":1,"dataavailabilitystatement":"This manuscript has no associated data.","file":[{"file_name":"2024_StochasticsEquations_Agresti.pdf","date_created":"2024-07-22T09:29:48Z","file_size":1206413,"file_id":"17297","success":1,"content_type":"application/pdf","date_updated":"2024-07-22T09:29:48Z","creator":"dernst","relation":"main_file","checksum":"59c9000761134d681bdf9d482664044c","access_level":"open_access"}],"intvolume":"        12","external_id":{"arxiv":["2109.09561"],"isi":["000874389000001"]},"date_updated":"2026-10-15T09:44:54Z","file_date_updated":"2024-07-22T09:29:48Z","abstract":[{"lang":"eng","text":"In this paper we consider the stochastic primitive equation for geophysical flows subject to transport noise and turbulent pressure. Admitting very rough noise terms, the global existence and uniqueness of solutions to this stochastic partial differential equation are proven using stochastic maximal L² regularity, the theory of critical spaces for stochastic evolution equations, and global a priori bounds. Compared to other results in this direction, we do not need any smallness assumption on the transport noise which acts directly on the velocity field and we also allow rougher noise terms. The adaptation to Stratonovich type noise and, more generally, to variable viscosity and/or conductivity are discussed as well."}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_type":"original","fulldoi":"https://doi.org/10.1007/s40072-022-00277-3","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"keyword":["Applied Mathematics","Modeling and Simulation","Statistics and Probability"],"ddc":["510"],"has_accepted_license":"1","date_published":"2024-03-01T00:00:00Z","volume":12,"department":[{"_id":"JuFi"}],"language":[{"iso":"eng"}],"publication_status":"published","page":"53-133","month":"03","date_created":"2023-01-12T12:12:29Z","supplementarymaterial":"yes","article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","scopus_import":"1","author":[{"first_name":"Antonio","orcid":"0000-0002-9573-2962","full_name":"Agresti, Antonio","id":"673cd0cc-9b9a-11eb-b144-88f30e1fbb72","last_name":"Agresti"},{"first_name":"Matthias","last_name":"Hieber","full_name":"Hieber, Matthias"},{"full_name":"Hussein, Amru","last_name":"Hussein","first_name":"Amru"},{"first_name":"Martin","last_name":"Saal","full_name":"Saal, Martin"}],"publication":"Stochastics and Partial Differential Equations: Analysis and Computations","doi":"10.1007/s40072-022-00277-3","type":"journal_article","publication_identifier":{"issn":["2194-0401"],"eissn":["2194-041X"]},"title":"The stochastic primitive equations with transport noise and turbulent pressure","oa":1},{"date_updated":"2025-04-15T06:44:30Z","file_date_updated":"2023-05-12T08:04:08Z","abstract":[{"text":"basic data for use in code for experimental data analysis for manuscript under revision: \r\nDynamic pathogen detection and social feedback shape collective hygiene in ants\r\nCasillas-Pérez B, Boďová K, Grasse AV, Tkačik G, Cremer S","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","fulldoi":"https://doi.org/10.15479/AT:ISTA:12945","keyword":["collective behavior","host-pathogen interactions","social immunity","epidemiology","social insects","probabilistic modeling"],"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"ddc":["570"],"has_accepted_license":"1","date_published":"2023-05-12T00:00:00Z","oa_version":"None","status":"public","_id":"12945","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant No. 771402; EPIDEMICSonCHIP) to SC, from the Scientific Grant Agency of the Slovak Republic (Grant No. 1/0521/20) to KB, and the Human Frontier Science Program (Grant No. RGP0065/2012) to GT.","year":"2023","citation":{"chicago":"Cremer, Sylvia. “Data from: ‘Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants’ .” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/AT:ISTA:12945\">https://doi.org/10.15479/AT:ISTA:12945</a>.","mla":"Cremer, Sylvia. <i>Data from: “Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants” </i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:12945\">10.15479/AT:ISTA:12945</a>.","short":"S. Cremer, (2023).","ama":"Cremer S. Data from: “Dynamic pathogen detection and social feedback shape collective hygiene in ants” . 2023. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:12945\">10.15479/AT:ISTA:12945</a>","ista":"Cremer S. 2023. Data from: ‘Dynamic pathogen detection and social feedback shape collective hygiene in ants’ , Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:12945\">10.15479/AT:ISTA:12945</a>.","apa":"Cremer, S. (2023). Data from: “Dynamic pathogen detection and social feedback shape collective hygiene in ants” . Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:12945\">https://doi.org/10.15479/AT:ISTA:12945</a>","ieee":"S. Cremer, “Data from: ‘Dynamic pathogen detection and social feedback shape collective hygiene in ants’ .” Institute of Science and Technology Austria, 2023."},"publisher":"Institute of Science and Technology Austria","day":"12","acknowledged_ssus":[{"_id":"LifeSc"}],"file":[{"date_updated":"2023-05-12T08:04:04Z","content_type":"application/zip","creator":"scremer","relation":"main_file","access_level":"open_access","checksum":"3eadf17fd59ad8c98bf10bf63061863c","file_name":"Experimental_data.zip","file_size":3414674,"date_created":"2023-05-12T08:04:04Z","file_id":"12947","success":1},{"access_level":"open_access","checksum":"1b5e8e01a0989154a76b44e6d8d68f89","relation":"main_file","creator":"scremer","content_type":"application/octet-stream","date_updated":"2023-05-12T08:04:08Z","success":1,"file_id":"12948","file_size":2113,"date_created":"2023-05-12T08:04:08Z","file_name":"README_Experimental_Data.md"}],"corr_author":"1","author":[{"full_name":"Cremer, Sylvia","last_name":"Cremer","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia","orcid":"0000-0002-2193-3868"}],"doi":"10.15479/AT:ISTA:12945","type":"research_data","oa":1,"title":"Data from: \"Dynamic pathogen detection and social feedback shape collective hygiene in ants\" ","contributor":[{"last_name":"Casillas Perez","id":"351ED2AA-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara E","contributor_type":"data_collector"},{"first_name":"Anna V","contributor_type":"data_collector","id":"406F989C-F248-11E8-B48F-1D18A9856A87","last_name":"Grasse"},{"contributor_type":"researcher","first_name":"Katarina","last_name":"Bodova"},{"first_name":"Gašper","contributor_type":"supervisor","orcid":"0000-0002-6699-1455","last_name":"Tkačik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"SyCr"}],"month":"05","date_created":"2023-05-11T21:35:17Z","article_processing_charge":"No","related_material":{"record":[{"id":"13127","relation":"used_in_publication","status":"public"}]}},{"article_processing_charge":"Yes (via OA deal)","date_created":"2023-05-16T09:39:14Z","project":[{"grant_number":"M03319","_id":"eb901961-77a9-11ec-83b8-f5c883a62027","name":"Perception-Aware Appearance Fabrication"}],"quality_controlled":"1","publication_status":"published","volume":42,"language":[{"iso":"eng"}],"department":[{"_id":"BeBi"}],"month":"07","oa":1,"title":"Skin-Screen: A computational fabrication framework for color tattoos","publication_identifier":{"eissn":["1557-7368"],"issn":["0730-0301"]},"type":"journal_article","doi":"10.1145/3592432","article_number":"67","conference":{"location":"Los Angeles, CA, United States","name":"SIGGRAPH: Computer Graphics and Interactive Techniques Conference","end_date":"2023-08-10","start_date":"2023-08-06"},"corr_author":"1","scopus_import":"1","publication":"ACM Transactions on Graphics","author":[{"full_name":"Piovarci, Michael","id":"62E473F4-5C99-11EA-A40E-AF823DDC885E","last_name":"Piovarci","first_name":"Michael","orcid":"0000-0002-5062-4474"},{"full_name":"Chapiro, Alexandre","last_name":"Chapiro","first_name":"Alexandre"},{"id":"49876194-F248-11E8-B48F-1D18A9856A87","last_name":"Bickel","full_name":"Bickel, Bernd","orcid":"0000-0001-6511-9385","first_name":"Bernd"}],"acknowledged_ssus":[{"_id":"M-Shop"}],"issue":"4","external_id":{"isi":["001044671300033"]},"intvolume":"        42","file":[{"file_size":30817343,"date_created":"2023-05-16T09:38:25Z","file_name":"Piovarci2023.pdf","file_id":"12985","success":1,"creator":"mpiovarc","content_type":"application/pdf","date_updated":"2023-05-16T09:38:25Z","relation":"main_file","access_level":"open_access","checksum":"5f0a6867689e025a661bd0b4fd90b821"},{"success":1,"file_id":"15324","date_created":"2024-04-16T05:52:18Z","file_size":30281676,"file_name":"2023_ACM_Piovarci.pdf","access_level":"open_access","checksum":"6dd371de5b517e5f184f9c2cbea4b8b3","relation":"main_file","creator":"dernst","content_type":"application/pdf","date_updated":"2024-04-16T05:52:18Z"}],"_id":"12984","status":"public","oa_version":"Published Version","isi":1,"day":"26","publisher":"Association for Computing Machinery","acknowledgement":"We thank Todor Asenov and the Miba Machine Shop for their help in assembling the tattoo machine and manufacturing the substrates. We thank Geysler Rodrigues for the insightful discussions on tattooing practices from a professional artist's perspective. We thank Maria Fernanda Portugal for sharing a doctor's perspective on medical applications of tattoos. This work is graciously supported by the FWF Lise Meitner (Grant M 3319).","year":"2023","citation":{"ista":"Piovarci M, Chapiro A, Bickel B. 2023. Skin-Screen: A computational fabrication framework for color tattoos. ACM Transactions on Graphics. 42(4), 67.","ama":"Piovarci M, Chapiro A, Bickel B. Skin-Screen: A computational fabrication framework for color tattoos. <i>ACM Transactions on Graphics</i>. 2023;42(4). doi:<a href=\"https://doi.org/10.1145/3592432\">10.1145/3592432</a>","apa":"Piovarci, M., Chapiro, A., &#38; Bickel, B. (2023). Skin-Screen: A computational fabrication framework for color tattoos. <i>ACM Transactions on Graphics</i>. Los Angeles, CA, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3592432\">https://doi.org/10.1145/3592432</a>","ieee":"M. Piovarci, A. Chapiro, and B. Bickel, “Skin-Screen: A computational fabrication framework for color tattoos,” <i>ACM Transactions on Graphics</i>, vol. 42, no. 4. Association for Computing Machinery, 2023.","chicago":"Piovarci, Michael, Alexandre Chapiro, and Bernd Bickel. “Skin-Screen: A Computational Fabrication Framework for Color Tattoos.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3592432\">https://doi.org/10.1145/3592432</a>.","short":"M. Piovarci, A. Chapiro, B. Bickel, ACM Transactions on Graphics 42 (2023).","mla":"Piovarci, Michael, et al. “Skin-Screen: A Computational Fabrication Framework for Color Tattoos.” <i>ACM Transactions on Graphics</i>, vol. 42, no. 4, 67, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3592432\">10.1145/3592432</a>."},"date_published":"2023-07-26T00:00:00Z","has_accepted_license":"1","ddc":["004"],"keyword":["appearance","modeling","reproduction","tattoo","skin color","gamut mapping","ink-optimization","prosthetic"],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"fulldoi":"https://doi.org/10.1145/3592432","article_type":"original","date_updated":"2025-04-15T07:43:53Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2024-04-16T05:52:18Z","abstract":[{"text":"Tattoos are a highly popular medium, with both artistic and medical applications. Although the mechanical process of tattoo application has evolved historically, the results are reliant on the artisanal skill of the artist. This can be especially challenging for some skin tones, or in cases where artists lack experience. We provide the first systematic overview of tattooing as a computational fabrication technique. We built an automated tattooing rig and a recipe for the creation of silicone sheets mimicking realistic skin tones, which allowed us to create an accurate model predicting tattoo appearance. This enables several exciting applications including tattoo previewing, color retargeting, novel ink spectra optimization, color-accurate prosthetics, and more.","lang":"eng"}]},{"scopus_import":"1","author":[{"full_name":"Andersen, Benjamin H.","last_name":"Andersen","first_name":"Benjamin H."},{"first_name":"Julian B","full_name":"Renaud, Julian B","last_name":"Renaud","id":"7af6767d-14eb-11ed-b536-a32449ae867c"},{"first_name":"Jonas","full_name":"Rønning, Jonas","last_name":"Rønning"},{"first_name":"Luiza","last_name":"Angheluta","full_name":"Angheluta, Luiza"},{"first_name":"Amin","last_name":"Doostmohammadi","full_name":"Doostmohammadi, Amin"}],"publication":"Physical Review Fluids","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2209.10916"}],"doi":"10.1103/physrevfluids.8.063101","type":"journal_article","publication_identifier":{"issn":["2469-990X"]},"oa":1,"title":"Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter","extern":"1","article_number":"063101","language":[{"iso":"eng"}],"volume":8,"publication_status":"published","month":"06","date_created":"2023-09-29T08:46:47Z","article_processing_charge":"No","quality_controlled":"1","date_updated":"2023-10-03T07:25:39Z","abstract":[{"text":"Coherent flows of self-propelled particles are characterized by vortices and jets that sustain chaotic flows, referred to as active turbulence. Here, we reveal a crossover between defect-free active turbulence and active turbulence laden with topological defects. Interestingly, we show that concurrent to the crossover from defect-free to defect-laden active turbulence is the restoration of the previously broken SO(2) symmetry signaled by the fast decay of the two-point correlations. By stability analyses of the topological charge density field, we provide theoretical insights on the criterion for the crossover to the defect-laden active turbulent state. Despite the distinct symmetry features between these two active turbulence regimes, the flow fluctuations exhibit universal statistical scaling behaviors at large scales, while the spectrum of polarity fluctuations decays exponentially at small length scales compared to the active energy injection length. These findings reveal a dynamical crossover between distinct spatiotemporal organization patterns in polar active matter.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","fulldoi":"https://doi.org/10.1103/physrevfluids.8.063101","article_type":"original","keyword":["Fluid Flow and Transfer Processes","Modeling and Simulation","Computational Mechanics"],"date_published":"2023-06-14T00:00:00Z","oa_version":"Preprint","status":"public","_id":"14377","citation":{"chicago":"Andersen, Benjamin H., Julian B Renaud, Jonas Rønning, Luiza Angheluta, and Amin Doostmohammadi. “Symmetry-Restoring Crossover from Defect-Free to Defect-Laden Turbulence in Polar Active Matter.” <i>Physical Review Fluids</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/physrevfluids.8.063101\">https://doi.org/10.1103/physrevfluids.8.063101</a>.","short":"B.H. Andersen, J.B. Renaud, J. Rønning, L. Angheluta, A. Doostmohammadi, Physical Review Fluids 8 (2023).","mla":"Andersen, Benjamin H., et al. “Symmetry-Restoring Crossover from Defect-Free to Defect-Laden Turbulence in Polar Active Matter.” <i>Physical Review Fluids</i>, vol. 8, no. 6, 063101, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/physrevfluids.8.063101\">10.1103/physrevfluids.8.063101</a>.","ama":"Andersen BH, Renaud JB, Rønning J, Angheluta L, Doostmohammadi A. Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. <i>Physical Review Fluids</i>. 2023;8(6). doi:<a href=\"https://doi.org/10.1103/physrevfluids.8.063101\">10.1103/physrevfluids.8.063101</a>","ista":"Andersen BH, Renaud JB, Rønning J, Angheluta L, Doostmohammadi A. 2023. Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. Physical Review Fluids. 8(6), 063101.","apa":"Andersen, B. H., Renaud, J. B., Rønning, J., Angheluta, L., &#38; Doostmohammadi, A. (2023). Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. <i>Physical Review Fluids</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevfluids.8.063101\">https://doi.org/10.1103/physrevfluids.8.063101</a>","ieee":"B. H. Andersen, J. B. Renaud, J. Rønning, L. Angheluta, and A. Doostmohammadi, “Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter,” <i>Physical Review Fluids</i>, vol. 8, no. 6. American Physical Society, 2023."},"year":"2023","publisher":"American Physical Society","day":"14","arxiv":1,"intvolume":"         8","external_id":{"arxiv":["2209.10916"]},"issue":"6"},{"oa":1,"title":"Spiked multiplicative random matrices and principal components","publication_identifier":{"issn":["0304-4149"],"eissn":["1879-209X"]},"type":"journal_article","doi":"10.1016/j.spa.2023.05.009","publication":"Stochastic Processes and their Applications","author":[{"full_name":"Ding, Xiucai","last_name":"Ding","first_name":"Xiucai"},{"full_name":"Ji, Hong Chang","last_name":"Ji","id":"dd216c0a-c1f9-11eb-beaf-e9ea9d2de76d","first_name":"Hong Chang"}],"scopus_import":"1","project":[{"grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020"}],"quality_controlled":"1","article_processing_charge":"Yes (in subscription journal)","date_created":"2024-01-10T09:29:25Z","month":"09","page":"25-60","publication_status":"published","volume":163,"language":[{"iso":"eng"}],"department":[{"_id":"LaEr"}],"has_accepted_license":"1","date_published":"2023-09-01T00:00:00Z","ddc":["510"],"keyword":["Applied Mathematics","Modeling and Simulation","Statistics and Probability"],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"fulldoi":"https://doi.org/10.1016/j.spa.2023.05.009","article_type":"original","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"In this paper, we study the eigenvalues and eigenvectors of the spiked invariant multiplicative models when the randomness is from Haar matrices. We establish the limits of the outlier eigenvalues λˆi and the generalized components (⟨v,uˆi⟩ for any deterministic vector v) of the outlier eigenvectors uˆi with optimal convergence rates. Moreover, we prove that the non-outlier eigenvalues stick with those of the unspiked matrices and the non-outlier eigenvectors are delocalized. The results also hold near the so-called BBP transition and for degenerate spikes. On one hand, our results can be regarded as a refinement of the counterparts of [12] under additional regularity conditions. On the other hand, they can be viewed as an analog of [34] by replacing the random matrix with i.i.d. entries with Haar random matrix."}],"file_date_updated":"2024-01-16T08:47:31Z","ec_funded":1,"date_updated":"2025-07-16T08:01:03Z","external_id":{"arxiv":["2302.13502"],"isi":["001113615900001"]},"intvolume":"       163","file":[{"creator":"dernst","date_updated":"2024-01-16T08:47:31Z","content_type":"application/pdf","relation":"main_file","checksum":"46a708b0cd5569a73d0f3d6c3e0a44dc","access_level":"open_access","file_size":1870349,"date_created":"2024-01-16T08:47:31Z","file_name":"2023_StochasticProcAppl_Ding.pdf","file_id":"14806","success":1}],"isi":1,"arxiv":1,"day":"01","publisher":"Elsevier","citation":{"chicago":"Ding, Xiucai, and Hong Chang Ji. “Spiked Multiplicative Random Matrices and Principal Components.” <i>Stochastic Processes and Their Applications</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">https://doi.org/10.1016/j.spa.2023.05.009</a>.","short":"X. Ding, H.C. Ji, Stochastic Processes and Their Applications 163 (2023) 25–60.","mla":"Ding, Xiucai, and Hong Chang Ji. “Spiked Multiplicative Random Matrices and Principal Components.” <i>Stochastic Processes and Their Applications</i>, vol. 163, Elsevier, 2023, pp. 25–60, doi:<a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">10.1016/j.spa.2023.05.009</a>.","ista":"Ding X, Ji HC. 2023. Spiked multiplicative random matrices and principal components. Stochastic Processes and their Applications. 163, 25–60.","ama":"Ding X, Ji HC. Spiked multiplicative random matrices and principal components. <i>Stochastic Processes and their Applications</i>. 2023;163:25-60. doi:<a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">10.1016/j.spa.2023.05.009</a>","ieee":"X. Ding and H. C. Ji, “Spiked multiplicative random matrices and principal components,” <i>Stochastic Processes and their Applications</i>, vol. 163. Elsevier, pp. 25–60, 2023.","apa":"Ding, X., &#38; Ji, H. C. (2023). Spiked multiplicative random matrices and principal components. <i>Stochastic Processes and Their Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">https://doi.org/10.1016/j.spa.2023.05.009</a>"},"acknowledgement":"The authors would like to thank the editor, the associated editor and two anonymous referees for their many critical suggestions which have significantly improved the paper. The authors are also grateful to Zhigang Bao and Ji Oon Lee for many helpful discussions. The first author also wants to thank Hari Bercovici for many useful comments. The first author is partially supported by National Science Foundation DMS-2113489 and the second author is supported by ERC Advanced Grant “RMTBeyond” No. 101020331.","year":"2023","_id":"14780","status":"public","oa_version":"Published Version"},{"acknowledged_ssus":[{"_id":"M-Shop"}],"issue":"5","external_id":{"isi":["001086833300010"]},"intvolume":"        42","file":[{"checksum":"4954c1cfa487725bc156dcfec872478a","access_level":"open_access","relation":"main_file","date_updated":"2023-07-04T08:11:28Z","content_type":"application/pdf","creator":"chafner","success":1,"file_id":"13194","file_name":"kirchhoff-rods.pdf","date_created":"2023-07-04T08:11:28Z","file_size":19635168},{"file_size":420909,"date_created":"2023-07-04T07:46:28Z","file_name":"supp-main.pdf","title":"Supplemental Material with Proofs","file_id":"13190","creator":"chafner","content_type":"application/pdf","date_updated":"2023-07-04T07:46:28Z","checksum":"79c9975fbc82ff71f1767331d2204cca","access_level":"open_access","relation":"supplementary_material"},{"file_id":"13191","file_name":"supp-cheat.pdf","title":"Cheat Sheet for Notation","file_size":430086,"date_created":"2023-07-04T07:46:30Z","relation":"supplementary_material","access_level":"open_access","checksum":"4ab647e4f03c711e1e6a5fc1eb8684db","date_updated":"2023-07-04T07:46:30Z","content_type":"application/pdf","creator":"chafner"},{"relation":"supplementary_material","checksum":"c0fd9a57d012046de90c185ffa904b76","access_level":"open_access","creator":"chafner","date_updated":"2023-07-04T07:46:39Z","content_type":"video/mp4","file_id":"13192","file_size":268088064,"date_created":"2023-07-04T07:46:39Z","title":"Supplemental Video","file_name":"kirchhoff-video-final.mp4"},{"file_size":25790,"date_created":"2023-07-04T07:47:10Z","file_name":"matlab-submission.zip","title":"Matlab Source Code with Example","file_id":"13193","creator":"chafner","date_updated":"2023-07-04T07:47:10Z","content_type":"application/x-zip-compressed","relation":"supplementary_material","checksum":"71b00712b489ada2cd9815910ee180a9","access_level":"open_access"}],"_id":"13188","status":"public","oa_version":"Submitted Version","isi":1,"day":"20","publisher":"Association for Computing Machinery","year":"2023","citation":{"chicago":"Hafner, Christian, and Bernd Bickel. “The Design Space of Kirchhoff Rods.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3606033\">https://doi.org/10.1145/3606033</a>.","mla":"Hafner, Christian, and Bernd Bickel. “The Design Space of Kirchhoff Rods.” <i>ACM Transactions on Graphics</i>, vol. 42, no. 5, 171, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3606033\">10.1145/3606033</a>.","short":"C. Hafner, B. Bickel, ACM Transactions on Graphics 42 (2023).","ama":"Hafner C, Bickel B. The design space of Kirchhoff rods. <i>ACM Transactions on Graphics</i>. 2023;42(5). doi:<a href=\"https://doi.org/10.1145/3606033\">10.1145/3606033</a>","ista":"Hafner C, Bickel B. 2023. The design space of Kirchhoff rods. ACM Transactions on Graphics. 42(5), 171.","apa":"Hafner, C., &#38; Bickel, B. (2023). The design space of Kirchhoff rods. <i>ACM Transactions on Graphics</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3606033\">https://doi.org/10.1145/3606033</a>","ieee":"C. Hafner and B. Bickel, “The design space of Kirchhoff rods,” <i>ACM Transactions on Graphics</i>, vol. 42, no. 5. Association for Computing Machinery, 2023."},"acknowledgement":"We thank the anonymous reviewers for their generous feedback, and Julian Fischer for his help in proving Proposition 1. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No. 715767).","has_accepted_license":"1","date_published":"2023-09-20T00:00:00Z","ddc":["516"],"keyword":["Computer Graphics","Computational Design","Computational Geometry","Shape Modeling"],"fulldoi":"https://doi.org/10.1145/3606033","article_type":"original","date_updated":"2026-10-26T23:30:05Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2023-07-04T08:11:28Z","abstract":[{"text":"The Kirchhoff rod model describes the bending and twisting of slender elastic rods in three dimensions, and has been widely studied to enable the prediction of how a rod will deform, given its geometry and boundary conditions. In this work, we study a number of inverse problems with the goal of computing the geometry of a straight rod that will automatically deform to match a curved target shape after attaching its endpoints to a support structure. Our solution lets us finely control the static equilibrium state of a rod by varying the cross-sectional profiles along its length.\r\nWe also show that the set of physically realizable equilibrium states admits a concise geometric description in terms of linear line complexes, which leads to very efficient computational design algorithms. Implemented in an interactive software tool, they allow us to convert three-dimensional hand-drawn spline curves to elastic rods, and give feedback about the feasibility and practicality of a design in real time. We demonstrate the efficacy of our method by designing and manufacturing several physical prototypes with applications to interior design and soft robotics.","lang":"eng"}],"ec_funded":1,"article_processing_charge":"No","date_created":"2023-07-04T07:41:30Z","project":[{"call_identifier":"H2020","_id":"24F9549A-B435-11E9-9278-68D0E5697425","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","grant_number":"715767"}],"related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"12897"}]},"quality_controlled":"1","publication_status":"published","volume":42,"department":[{"_id":"BeBi"}],"language":[{"iso":"eng"}],"month":"09","oa":1,"title":"The design space of Kirchhoff rods","publication_identifier":{"issn":["0730-0301"],"eissn":["1557-7368"]},"type":"journal_article","doi":"10.1145/3606033","article_number":"171","corr_author":"1","scopus_import":"1","publication":"ACM Transactions on Graphics","author":[{"first_name":"Christian","id":"400429CC-F248-11E8-B48F-1D18A9856A87","last_name":"Hafner","full_name":"Hafner, Christian"},{"full_name":"Bickel, Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","last_name":"Bickel","first_name":"Bernd","orcid":"0000-0001-6511-9385"}]},{"quality_controlled":"1","date_created":"2022-07-11T12:19:59Z","article_processing_charge":"No","month":"10","language":[{"iso":"eng"}],"department":[{"_id":"GradSch"},{"_id":"ChWo"}],"volume":467,"publication_status":"published","article_number":"111439","doi":"10.1016/j.jcp.2022.111439","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2103.09481","open_access":"1"}],"type":"journal_article","publication_identifier":{"issn":["0021-9991"]},"oa":1,"title":"Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics","author":[{"full_name":"Kalinov, Aleksei","last_name":"Kalinov","id":"44b7120e-eb97-11eb-a6c2-e1557aa81d02","first_name":"Aleksei","orcid":"0000-0003-2189-3904"},{"first_name":"A.I.","last_name":"Osinskiy","full_name":"Osinskiy, A.I."},{"full_name":"Matveev, S.A.","last_name":"Matveev","first_name":"S.A."},{"first_name":"W.","full_name":"Otieno, W.","last_name":"Otieno"},{"last_name":"Brilliantov","full_name":"Brilliantov, N.V.","first_name":"N.V."}],"publication":"Journal of Computational Physics","scopus_import":"1","intvolume":"       467","external_id":{"arxiv":["2103.09481"],"isi":["000917225500013"]},"year":"2022","citation":{"chicago":"Kalinov, Aleksei, A.I. Osinskiy, S.A. Matveev, W. Otieno, and N.V. Brilliantov. “Direct Simulation Monte Carlo for New Regimes in Aggregation-Fragmentation Kinetics.” <i>Journal of Computational Physics</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.jcp.2022.111439\">https://doi.org/10.1016/j.jcp.2022.111439</a>.","short":"A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).","mla":"Kalinov, Aleksei, et al. “Direct Simulation Monte Carlo for New Regimes in Aggregation-Fragmentation Kinetics.” <i>Journal of Computational Physics</i>, vol. 467, 111439, Elsevier, 2022, doi:<a href=\"https://doi.org/10.1016/j.jcp.2022.111439\">10.1016/j.jcp.2022.111439</a>.","ama":"Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics. <i>Journal of Computational Physics</i>. 2022;467. doi:<a href=\"https://doi.org/10.1016/j.jcp.2022.111439\">10.1016/j.jcp.2022.111439</a>","ista":"Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. 2022. Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics. Journal of Computational Physics. 467, 111439.","ieee":"A. Kalinov, A. I. Osinskiy, S. A. Matveev, W. Otieno, and N. V. Brilliantov, “Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics,” <i>Journal of Computational Physics</i>, vol. 467. Elsevier, 2022.","apa":"Kalinov, A., Osinskiy, A. I., Matveev, S. A., Otieno, W., &#38; Brilliantov, N. V. (2022). Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics. <i>Journal of Computational Physics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcp.2022.111439\">https://doi.org/10.1016/j.jcp.2022.111439</a>"},"acknowledgement":"Zhores supercomputer of Skolkovo Institute of Science and Technology [68] has been used in the present research. S.A.M. was supported by Moscow Center for Fundamental and Applied Mathematics (the agreement with the Ministry of Education and Science of the Russian Federation No. 075-15-2019-1624). A.I.O. acknowledges RFBR project No. 20-31-90022. N.V.B. acknowledges the support of the Analytical Center (subsidy agreement 000000D730321P5Q0002, Grant No. 70-2021-00145 02.11.2021).","publisher":"Elsevier","day":"15","arxiv":1,"isi":1,"oa_version":"Preprint","status":"public","_id":"11556","fulldoi":"https://doi.org/10.1016/j.jcp.2022.111439","article_type":"original","keyword":["Computer Science Applications","Physics and Astronomy (miscellaneous)","Applied Mathematics","Computational Mathematics","Modeling and Simulation","Numerical Analysis"],"ddc":["518"],"date_published":"2022-10-15T00:00:00Z","abstract":[{"text":"We revisit two basic Direct Simulation Monte Carlo Methods to model aggregation kinetics and extend them for aggregation processes with collisional fragmentation (shattering). We test the performance and accuracy of the extended methods and compare their performance with efficient deterministic finite-difference method applied to the same model. We validate the stochastic methods on the test problems and apply them to verify the existence of oscillating regimes in the aggregation-fragmentation kinetics recently detected in deterministic simulations. We confirm the emergence of steady oscillations of densities in such systems and prove the stability of the\r\noscillations with respect to fluctuations and noise.","lang":"eng"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_updated":"2024-10-21T06:01:47Z"},{"author":[{"full_name":"Koudjinan, Edmond","id":"52DF3E68-AEFA-11EA-95A4-124A3DDC885E","last_name":"Koudjinan","first_name":"Edmond","orcid":"0000-0003-2640-4049"},{"full_name":"Kaloshin, Vadim","last_name":"Kaloshin","id":"FE553552-CDE8-11E9-B324-C0EBE5697425","first_name":"Vadim","orcid":"0000-0002-6051-2628"}],"publication":"Regular and Chaotic Dynamics","scopus_import":"1","corr_author":"1","doi":"10.1134/S1560354722050021","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2105.14640","open_access":"1"}],"type":"journal_article","publication_identifier":{"issn":["1560-3547"],"eissn":["1468-4845"]},"oa":1,"title":"On some invariants of Birkhoff billiards under conjugacy","month":"10","language":[{"iso":"eng"}],"department":[{"_id":"VaKa"}],"volume":27,"publication_status":"published","page":"525-537","quality_controlled":"1","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1134/s1560354722060107"}]},"project":[{"call_identifier":"H2020","_id":"9B8B92DE-BA93-11EA-9121-9846C619BF3A","name":"Spectral rigidity and integrability for billiards and geodesic flows","grant_number":"885707"}],"date_created":"2023-01-12T12:06:49Z","article_processing_charge":"No","ec_funded":1,"abstract":[{"text":"In the class of strictly convex smooth boundaries each of which has no strip around its boundary foliated by invariant curves, we prove that the Taylor coefficients of the “normalized” Mather’s β-function are invariant under C∞-conjugacies. In contrast, we prove that any two elliptic billiard maps are C0-conjugate near their respective boundaries, and C∞-conjugate, near the boundary and away from a line passing through the center of the underlying ellipse. We also prove that, if the billiard maps corresponding to two ellipses are topologically conjugate, then the two ellipses are similar.","lang":"eng"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_updated":"2025-04-14T07:53:45Z","fulldoi":"https://doi.org/10.1134/S1560354722050021","article_type":"original","keyword":["Mechanical Engineering","Applied Mathematics","Mathematical Physics","Modeling and Simulation","Statistical and Nonlinear Physics","Mathematics (miscellaneous)"],"date_published":"2022-10-03T00:00:00Z","citation":{"mla":"Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff Billiards under Conjugacy.” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6, Springer Nature, 2022, pp. 525–37, doi:<a href=\"https://doi.org/10.1134/S1560354722050021\">10.1134/S1560354722050021</a>.","short":"E. Koudjinan, V. Kaloshin, Regular and Chaotic Dynamics 27 (2022) 525–537.","chicago":"Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff Billiards under Conjugacy.” <i>Regular and Chaotic Dynamics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1134/S1560354722050021\">https://doi.org/10.1134/S1560354722050021</a>.","apa":"Koudjinan, E., &#38; Kaloshin, V. (2022). On some invariants of Birkhoff billiards under conjugacy. <i>Regular and Chaotic Dynamics</i>. Springer Nature. <a href=\"https://doi.org/10.1134/S1560354722050021\">https://doi.org/10.1134/S1560354722050021</a>","ieee":"E. Koudjinan and V. Kaloshin, “On some invariants of Birkhoff billiards under conjugacy,” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6. Springer Nature, pp. 525–537, 2022.","ista":"Koudjinan E, Kaloshin V. 2022. On some invariants of Birkhoff billiards under conjugacy. Regular and Chaotic Dynamics. 27(6), 525–537.","ama":"Koudjinan E, Kaloshin V. On some invariants of Birkhoff billiards under conjugacy. <i>Regular and Chaotic Dynamics</i>. 2022;27(6):525-537. doi:<a href=\"https://doi.org/10.1134/S1560354722050021\">10.1134/S1560354722050021</a>"},"acknowledgement":"We are grateful to the anonymous referees for their careful reading and valuable remarks and\r\ncomments which helped to improve the paper significantly. We gratefully acknowledge support from the European Research Council (ERC) through the Advanced Grant “SPERIG” (#885707).","year":"2022","publisher":"Springer Nature","day":"03","arxiv":1,"isi":1,"oa_version":"Preprint","_id":"12145","status":"public","intvolume":"        27","external_id":{"arxiv":["2105.14640"],"isi":["000865267300002"]},"issue":"6"},{"issue":"10","external_id":{"isi":["000924885500005"],"pmid":["36251703"]},"intvolume":"        18","file":[{"creator":"dernst","content_type":"application/pdf","date_updated":"2023-01-24T10:45:01Z","checksum":"bada6a7865e470cf42bbdfa67dd471d2","access_level":"open_access","relation":"main_file","file_size":2641067,"date_created":"2023-01-24T10:45:01Z","file_name":"2022_PLoSCompBio_Jiang.pdf","success":1,"file_id":"12359"}],"isi":1,"day":"17","publisher":"Public Library of Science","year":"2022","acknowledgement":"A.S . received an award from European Research Council (https://erc.europa.eu, “NEPA\"\r\n802960), and an award from the Royal Society (https://royalsociety.org, UF160266). L. H.-K.\r\nreceived an award from the Biotechnology and Biological Sciences Research Council (https://\r\nwww.ukri.org/councils/bbsrc/). E. L. received an award from the University College London (https://www.ucl.ac.uk/biophysics/news/2022/feb/applications-biop-brian-duff-and-ipls-summerundergraduate-studentships-now-open, Brian Duff Undergraduate Summer Research Studentship). B.B. and A.S. received an award from Volkswagen Foundation https://www.volkswagenstiftung.de/en/foundation, Az 96727), and an award from Medical Research Council (https://www.ukri.org/councils/mrc, MC_CF1226). A. R. received an\r\naward from the Swiss National Fund for Research (https://www.snf.ch/en, 31003A_130520,\r\n31003A_149975, and 31003A_173087) and an award from the European Research Council\r\nConsolidator (https://erc.europa.eu, 311536). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","citation":{"short":"X. Jiang, L. Harker-Kirschneck, C.E. Vanhille-Campos, A.-K. Pfitzner, E. Lominadze, A. Roux, B. Baum, A. Šarić, PLOS Computational Biology 18 (2022).","mla":"Jiang, Xiuyun, et al. “Modelling Membrane Reshaping by Staged Polymerization of ESCRT-III Filaments.” <i>PLOS Computational Biology</i>, vol. 18, no. 10, e1010586, Public Library of Science, 2022, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1010586\">10.1371/journal.pcbi.1010586</a>.","chicago":"Jiang, Xiuyun, Lena Harker-Kirschneck, Christian Eduardo Vanhille-Campos, Anna-Katharina Pfitzner, Elene Lominadze, Aurélien Roux, Buzz Baum, and Anđela Šarić. “Modelling Membrane Reshaping by Staged Polymerization of ESCRT-III Filaments.” <i>PLOS Computational Biology</i>. Public Library of Science, 2022. <a href=\"https://doi.org/10.1371/journal.pcbi.1010586\">https://doi.org/10.1371/journal.pcbi.1010586</a>.","ieee":"X. Jiang <i>et al.</i>, “Modelling membrane reshaping by staged polymerization of ESCRT-III filaments,” <i>PLOS Computational Biology</i>, vol. 18, no. 10. Public Library of Science, 2022.","apa":"Jiang, X., Harker-Kirschneck, L., Vanhille-Campos, C. E., Pfitzner, A.-K., Lominadze, E., Roux, A., … Šarić, A. (2022). Modelling membrane reshaping by staged polymerization of ESCRT-III filaments. <i>PLOS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1010586\">https://doi.org/10.1371/journal.pcbi.1010586</a>","ista":"Jiang X, Harker-Kirschneck L, Vanhille-Campos CE, Pfitzner A-K, Lominadze E, Roux A, Baum B, Šarić A. 2022. Modelling membrane reshaping by staged polymerization of ESCRT-III filaments. PLOS Computational Biology. 18(10), e1010586.","ama":"Jiang X, Harker-Kirschneck L, Vanhille-Campos CE, et al. Modelling membrane reshaping by staged polymerization of ESCRT-III filaments. <i>PLOS Computational Biology</i>. 2022;18(10). doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1010586\">10.1371/journal.pcbi.1010586</a>"},"_id":"12152","status":"public","oa_version":"Published Version","has_accepted_license":"1","date_published":"2022-10-17T00:00:00Z","ddc":["570"],"keyword":["Computational Theory and Mathematics","Cellular and Molecular Neuroscience","Genetics","Molecular Biology","Ecology","Modeling and Simulation","Ecology","Evolution","Behavior and Systematics"],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"fulldoi":"https://doi.org/10.1371/journal.pcbi.1010586","article_type":"original","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2023-01-24T10:45:01Z","ec_funded":1,"abstract":[{"text":"ESCRT-III filaments are composite cytoskeletal polymers that can constrict and cut cell membranes from the inside of the membrane neck. Membrane-bound ESCRT-III filaments undergo a series of dramatic composition and geometry changes in the presence of an ATP-consuming Vps4 enzyme, which causes stepwise changes in the membrane morphology. We set out to understand the physical mechanisms involved in translating the changes in ESCRT-III polymer composition into membrane deformation. We have built a coarse-grained model in which ESCRT-III polymers of different geometries and mechanical properties are allowed to copolymerise and bind to a deformable membrane. By modelling ATP-driven stepwise depolymerisation of specific polymers, we identify mechanical regimes in which changes in filament composition trigger the associated membrane transition from a flat to a buckled state, and then to a tubule state that eventually undergoes scission to release a small cargo-loaded vesicle. We then characterise how the location and kinetics of polymer loss affects the extent of membrane deformation and the efficiency of membrane neck scission. Our results identify the near-minimal mechanical conditions for the operation of shape-shifting composite polymers that sever membrane necks.","lang":"eng"}],"date_updated":"2025-06-12T06:19:28Z","project":[{"grant_number":"802960","call_identifier":"H2020","name":"Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines","_id":"eba2549b-77a9-11ec-83b8-a81e493eae4e"},{"name":"The evolution of trafficking: from archaea to eukaryotes","_id":"eba0f67c-77a9-11ec-83b8-cc8501b3e222","grant_number":"96752"}],"related_material":{"link":[{"url":"https://github.com/sharonJXY/3-filament-model","relation":"software"}]},"quality_controlled":"1","article_processing_charge":"No","date_created":"2023-01-12T12:08:10Z","month":"10","publication_status":"published","department":[{"_id":"AnSa"}],"volume":18,"language":[{"iso":"eng"}],"article_number":"e1010586","oa":1,"title":"Modelling membrane reshaping by staged polymerization of ESCRT-III filaments","publication_identifier":{"issn":["1553-7358"]},"pmid":1,"type":"journal_article","doi":"10.1371/journal.pcbi.1010586","publication":"PLOS Computational Biology","author":[{"first_name":"Xiuyun","last_name":"Jiang","full_name":"Jiang, Xiuyun"},{"first_name":"Lena","last_name":"Harker-Kirschneck","full_name":"Harker-Kirschneck, Lena"},{"first_name":"Christian Eduardo","id":"3adeca52-9313-11ed-b1ac-c170b2505714","last_name":"Vanhille-Campos","full_name":"Vanhille-Campos, Christian Eduardo"},{"full_name":"Pfitzner, Anna-Katharina","last_name":"Pfitzner","first_name":"Anna-Katharina"},{"first_name":"Elene","full_name":"Lominadze, Elene","last_name":"Lominadze"},{"last_name":"Roux","full_name":"Roux, Aurélien","first_name":"Aurélien"},{"first_name":"Buzz","last_name":"Baum","full_name":"Baum, Buzz"},{"first_name":"Anđela","orcid":"0000-0002-7854-2139","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","last_name":"Šarić","full_name":"Šarić, Anđela"}],"corr_author":"1","scopus_import":"1"},{"month":"09","department":[{"_id":"GaTk"}],"language":[{"iso":"eng"}],"volume":31,"publication_status":"published","quality_controlled":"1","project":[{"name":"Biophysics of information processing in gene regulation","_id":"254E9036-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"P28844-B27"}],"date_created":"2023-01-12T12:08:51Z","article_processing_charge":"Yes (via OA deal)","author":[{"first_name":"Benjamin","last_name":"Zoller","full_name":"Zoller, Benjamin"},{"first_name":"Thomas","full_name":"Gregor, Thomas","last_name":"Gregor"},{"full_name":"Tkačik, Gašper","last_name":"Tkačik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gašper","orcid":"1"}],"publication":"Current Opinion in Systems Biology","scopus_import":"1","corr_author":"1","article_number":"100435","doi":"10.1016/j.coisb.2022.100435","type":"journal_article","pmid":1,"publication_identifier":{"issn":["2452-3100"]},"oa":1,"title":"Eukaryotic gene regulation at equilibrium, or non?","year":"2022","acknowledgement":"This work was supported through the Center for the Physics of Biological Function (PHYe1734030) and by National Institutes of Health Grants R01GM097275 and U01DK127429 (TG). GT acknowledges the support of the Austrian Science Fund grant FWF P28844 and the Human Frontiers Science Program. ","citation":{"ieee":"B. Zoller, T. Gregor, and G. Tkačik, “Eukaryotic gene regulation at equilibrium, or non?,” <i>Current Opinion in Systems Biology</i>, vol. 31, no. 9. Elsevier, 2022.","apa":"Zoller, B., Gregor, T., &#38; Tkačik, G. (2022). Eukaryotic gene regulation at equilibrium, or non? <i>Current Opinion in Systems Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.coisb.2022.100435\">https://doi.org/10.1016/j.coisb.2022.100435</a>","ama":"Zoller B, Gregor T, Tkačik G. Eukaryotic gene regulation at equilibrium, or non? <i>Current Opinion in Systems Biology</i>. 2022;31(9). doi:<a href=\"https://doi.org/10.1016/j.coisb.2022.100435\">10.1016/j.coisb.2022.100435</a>","ista":"Zoller B, Gregor T, Tkačik G. 2022. Eukaryotic gene regulation at equilibrium, or non? Current Opinion in Systems Biology. 31(9), 100435.","mla":"Zoller, Benjamin, et al. “Eukaryotic Gene Regulation at Equilibrium, or Non?” <i>Current Opinion in Systems Biology</i>, vol. 31, no. 9, 100435, Elsevier, 2022, doi:<a href=\"https://doi.org/10.1016/j.coisb.2022.100435\">10.1016/j.coisb.2022.100435</a>.","short":"B. Zoller, T. Gregor, G. Tkačik, Current Opinion in Systems Biology 31 (2022).","chicago":"Zoller, Benjamin, Thomas Gregor, and Gašper Tkačik. “Eukaryotic Gene Regulation at Equilibrium, or Non?” <i>Current Opinion in Systems Biology</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.coisb.2022.100435\">https://doi.org/10.1016/j.coisb.2022.100435</a>."},"publisher":"Elsevier","day":"01","oa_version":"Published Version","_id":"12156","status":"public","file":[{"access_level":"open_access","checksum":"97ef01e0cc60cdc84f45640a0f248fb0","relation":"main_file","date_updated":"2023-01-24T12:14:10Z","content_type":"application/pdf","creator":"dernst","success":1,"file_id":"12362","file_name":"2022_CurrentBiology_Zoller.pdf","date_created":"2023-01-24T12:14:10Z","file_size":2214944}],"intvolume":"        31","external_id":{"pmid":["36590072"]},"issue":"9","abstract":[{"lang":"eng","text":"Models of transcriptional regulation that assume equilibrium binding of transcription factors have been less successful at predicting gene expression from sequence in eukaryotes than in bacteria. This could be due to the non-equilibrium nature of eukaryotic regulation. Unfortunately, the space of possible non-equilibrium mechanisms is vast and predominantly uninteresting. The key question is therefore how this space can be navigated efficiently, to focus on mechanisms and models that are biologically relevant. In this review, we advocate for the normative role of theory—theory that prescribes rather than just describes—in providing such a focus. Theory should expand its remit beyond inferring mechanistic models from data, towards identifying non-equilibrium gene regulatory schemes that may have been evolutionarily selected, despite their energy consumption, because they are precise, reliable, fast, or otherwise outperform regulation at equilibrium. We illustrate our reasoning by toy examples for which we provide simulation code."}],"file_date_updated":"2023-01-24T12:14:10Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-06-11T13:47:43Z","fulldoi":"https://doi.org/10.1016/j.coisb.2022.100435","article_type":"original","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"keyword":["Applied Mathematics","Computer Science Applications","Drug Discovery","General Biochemistry","Genetics and Molecular Biology","Modeling and Simulation"],"ddc":["570"],"has_accepted_license":"1","date_published":"2022-09-01T00:00:00Z"},{"date_published":"2022-08-03T00:00:00Z","fulldoi":"https://doi.org/10.1103/physrevfluids.7.l081301","article_type":"original","keyword":["Fluid Flow and Transfer Processes","Modeling and Simulation","Computational Mechanics"],"date_updated":"2024-10-09T21:03:55Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"text":"We report frictional drag reduction and a complete flow relaminarization of elastic turbulence (ET) at vanishing inertia in a viscoelastic channel flow past an obstacle. We show that the intensity of the observed elastic waves and wall-normal vorticity correlate well with the measured drag above the onset of ET. Moreover, we find that the elastic wave frequency grows with the Weissenberg number, and at sufficiently high frequency it causes a decay of the elastic waves, resulting in ET attenuation and drag reduction. Thus, this allows us to substantiate a physical mechanism, involving the interaction of elastic waves with wall-normal vorticity fluctuations, leading to the drag reduction and relaminarization phenomena at low Reynolds number.","lang":"eng"}],"external_id":{"arxiv":["2205.12871"],"isi":["000836397000001"]},"issue":"8","intvolume":"         7","_id":"12279","status":"public","oa_version":"Preprint","arxiv":1,"day":"03","isi":1,"acknowledgement":"We thank G. Falkovich for discussion and Guy Han for technical support. We are grateful to N. Jha for his help in µPIV measurements. This work is partially supported by the grants from\r\nIsrael Science Foundation (ISF; grant #882/15 and grant #784/19) and Binational USA-Israel Foundation (BSF;grant #2016145). ","year":"2022","citation":{"mla":"Kumar, M. Vijay, et al. “Relaminarization of Elastic Turbulence.” <i>Physical Review Fluids</i>, vol. 7, no. 8, L081301, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/physrevfluids.7.l081301\">10.1103/physrevfluids.7.l081301</a>.","short":"M.V. Kumar, A. Varshney, D. Li, V. Steinberg, Physical Review Fluids 7 (2022).","chicago":"Kumar, M. Vijay, Atul Varshney, Dongyang Li, and Victor Steinberg. “Relaminarization of Elastic Turbulence.” <i>Physical Review Fluids</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/physrevfluids.7.l081301\">https://doi.org/10.1103/physrevfluids.7.l081301</a>.","ieee":"M. V. Kumar, A. Varshney, D. Li, and V. Steinberg, “Relaminarization of elastic turbulence,” <i>Physical Review Fluids</i>, vol. 7, no. 8. American Physical Society, 2022.","apa":"Kumar, M. V., Varshney, A., Li, D., &#38; Steinberg, V. (2022). Relaminarization of elastic turbulence. <i>Physical Review Fluids</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevfluids.7.l081301\">https://doi.org/10.1103/physrevfluids.7.l081301</a>","ama":"Kumar MV, Varshney A, Li D, Steinberg V. Relaminarization of elastic turbulence. <i>Physical Review Fluids</i>. 2022;7(8). doi:<a href=\"https://doi.org/10.1103/physrevfluids.7.l081301\">10.1103/physrevfluids.7.l081301</a>","ista":"Kumar MV, Varshney A, Li D, Steinberg V. 2022. Relaminarization of elastic turbulence. Physical Review Fluids. 7(8), L081301."},"publisher":"American Physical Society","publication_identifier":{"issn":["2469-990X"]},"oa":1,"title":"Relaminarization of elastic turbulence","doi":"10.1103/physrevfluids.7.l081301","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2205.12871"}],"type":"journal_article","article_number":"L081301","corr_author":"1","scopus_import":"1","publication":"Physical Review Fluids","author":[{"full_name":"Kumar, M. Vijay","last_name":"Kumar","first_name":"M. Vijay"},{"last_name":"Varshney","id":"2A2006B2-F248-11E8-B48F-1D18A9856A87","full_name":"Varshney, Atul","first_name":"Atul","orcid":"0000-0002-3072-5999"},{"first_name":"Dongyang","last_name":"Li","full_name":"Li, Dongyang"},{"last_name":"Steinberg","full_name":"Steinberg, Victor","first_name":"Victor"}],"date_created":"2023-01-16T10:02:40Z","article_processing_charge":"No","quality_controlled":"1","department":[{"_id":"BjHo"}],"volume":7,"language":[{"iso":"eng"}],"publication_status":"published","month":"08"},{"status":"public","_id":"12280","oa_version":"Published Version","day":"14","isi":1,"acknowledgement":"This work was supported by the European Research Council (https://erc.europa.eu/)\r\nCoG 863818 (ForM-SMArt) (to K.C.), and the European Research Council Starting Grant 850529: E-DIRECT (to C.H.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","year":"2022","citation":{"ieee":"L. Schmid, C. Hilbe, K. Chatterjee, and M. Nowak, “Direct reciprocity between individuals that use different strategy spaces,” <i>PLOS Computational Biology</i>, vol. 18, no. 6. Public Library of Science, 2022.","apa":"Schmid, L., Hilbe, C., Chatterjee, K., &#38; Nowak, M. (2022). Direct reciprocity between individuals that use different strategy spaces. <i>PLOS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1010149\">https://doi.org/10.1371/journal.pcbi.1010149</a>","ista":"Schmid L, Hilbe C, Chatterjee K, Nowak M. 2022. Direct reciprocity between individuals that use different strategy spaces. PLOS Computational Biology. 18(6), e1010149.","ama":"Schmid L, Hilbe C, Chatterjee K, Nowak M. Direct reciprocity between individuals that use different strategy spaces. <i>PLOS Computational Biology</i>. 2022;18(6). doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1010149\">10.1371/journal.pcbi.1010149</a>","mla":"Schmid, Laura, et al. “Direct Reciprocity between Individuals That Use Different Strategy Spaces.” <i>PLOS Computational Biology</i>, vol. 18, no. 6, e1010149, Public Library of Science, 2022, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1010149\">10.1371/journal.pcbi.1010149</a>.","short":"L. Schmid, C. Hilbe, K. Chatterjee, M. Nowak, PLOS Computational Biology 18 (2022).","chicago":"Schmid, Laura, Christian Hilbe, Krishnendu Chatterjee, and Martin Nowak. “Direct Reciprocity between Individuals That Use Different Strategy Spaces.” <i>PLOS Computational Biology</i>. Public Library of Science, 2022. <a href=\"https://doi.org/10.1371/journal.pcbi.1010149\">https://doi.org/10.1371/journal.pcbi.1010149</a>."},"publisher":"Public Library of Science","external_id":{"isi":["000843626800031"],"pmid":["35700167"]},"issue":"6","file":[{"checksum":"31b6b311b6731f1658277a9dfff6632c","access_level":"open_access","relation":"main_file","date_updated":"2023-01-30T11:28:13Z","content_type":"application/pdf","creator":"dernst","success":1,"file_id":"12460","file_name":"2022_PlosCompBio_Schmid.pdf","date_created":"2023-01-30T11:28:13Z","file_size":3143222}],"intvolume":"        18","date_updated":"2025-04-14T07:52:47Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file_date_updated":"2023-01-30T11:28:13Z","abstract":[{"lang":"eng","text":"In repeated interactions, players can use strategies that respond to the outcome of previous rounds. Much of the existing literature on direct reciprocity assumes that all competing individuals use the same strategy space. Here, we study both learning and evolutionary dynamics of players that differ in the strategy space they explore. We focus on the infinitely repeated donation game and compare three natural strategy spaces: memory-1 strategies, which consider the last moves of both players, reactive strategies, which respond to the last move of the co-player, and unconditional strategies. These three strategy spaces differ in the memory capacity that is needed. We compute the long term average payoff that is achieved in a pairwise learning process. We find that smaller strategy spaces can dominate larger ones. For weak selection, unconditional players dominate both reactive and memory-1 players. For intermediate selection, reactive players dominate memory-1 players. Only for strong selection and low cost-to-benefit ratio, memory-1 players dominate the others. We observe that the supergame between strategy spaces can be a social dilemma: maximum payoff is achieved if both players explore a larger strategy space, but smaller strategy spaces dominate."}],"ec_funded":1,"ddc":["000","570"],"has_accepted_license":"1","date_published":"2022-06-14T00:00:00Z","fulldoi":"https://doi.org/10.1371/journal.pcbi.1010149","article_type":"original","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"keyword":["Computational Theory and Mathematics","Cellular and Molecular Neuroscience","Genetics","Molecular Biology","Ecology","Modeling and Simulation","Ecology","Evolution","Behavior and Systematics"],"department":[{"_id":"KrCh"}],"volume":18,"language":[{"iso":"eng"}],"publication_status":"published","month":"06","date_created":"2023-01-16T10:02:51Z","article_processing_charge":"No","project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","grant_number":"863818"}],"quality_controlled":"1","corr_author":"1","scopus_import":"1","publication":"PLOS Computational Biology","author":[{"last_name":"Schmid","id":"38B437DE-F248-11E8-B48F-1D18A9856A87","full_name":"Schmid, Laura","first_name":"Laura","orcid":"0000-0002-6978-7329"},{"orcid":"0000-0001-5116-955X","first_name":"Christian","full_name":"Hilbe, Christian","last_name":"Hilbe","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","first_name":"Krishnendu"},{"first_name":"Martin","full_name":"Nowak, Martin","last_name":"Nowak"}],"pmid":1,"publication_identifier":{"eissn":["1553-7358"]},"oa":1,"title":"Direct reciprocity between individuals that use different strategy spaces","doi":"10.1371/journal.pcbi.1010149","type":"journal_article","article_number":"e1010149"},{"month":"08","page":"21","language":[{"iso":"eng"}],"department":[{"_id":"StFr"}],"publication_status":"submitted","related_material":{"record":[{"status":"public","relation":"later_version","id":"10813"}]},"date_created":"2021-08-31T12:54:16Z","article_processing_charge":"No","publication":"Research Square","author":[{"full_name":"Cao, Deqing","last_name":"Cao","first_name":"Deqing"},{"last_name":"Shen","full_name":"Shen, Xiaoxiao","first_name":"Xiaoxiao"},{"first_name":"Aiping","full_name":"Wang, Aiping","last_name":"Wang"},{"full_name":"Yu, Fengjiao","last_name":"Yu","first_name":"Fengjiao"},{"last_name":"Wu","full_name":"Wu, Yuping","first_name":"Yuping"},{"first_name":"Siqi","full_name":"Shi, Siqi","last_name":"Shi"},{"first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"first_name":"Yuhui","last_name":"Chen","full_name":"Chen, Yuhui"}],"corr_author":"1","publication_identifier":{"eissn":["2693-5015"]},"title":"Sharp kinetic acceleration potentials during mediated redox catalysis of insulators","oa":1,"doi":"10.21203/rs.3.rs-750965/v1","type":"preprint","day":"18","citation":{"chicago":"Cao, Deqing, Xiaoxiao Shen, Aiping Wang, Fengjiao Yu, Yuping Wu, Siqi Shi, Stefan Alexander Freunberger, and Yuhui Chen. “Sharp Kinetic Acceleration Potentials during Mediated Redox Catalysis of Insulators.” <i>Research Square</i>. Research Square, n.d. <a href=\"https://doi.org/10.21203/rs.3.rs-750965/v1\">https://doi.org/10.21203/rs.3.rs-750965/v1</a>.","mla":"Cao, Deqing, et al. “Sharp Kinetic Acceleration Potentials during Mediated Redox Catalysis of Insulators.” <i>Research Square</i>, Research Square, doi:<a href=\"https://doi.org/10.21203/rs.3.rs-750965/v1\">10.21203/rs.3.rs-750965/v1</a>.","short":"D. Cao, X. Shen, A. Wang, F. Yu, Y. Wu, S. Shi, S.A. Freunberger, Y. Chen, Research Square (n.d.).","ista":"Cao D, Shen X, Wang A, Yu F, Wu Y, Shi S, Freunberger SA, Chen Y. Sharp kinetic acceleration potentials during mediated redox catalysis of insulators. Research Square, <a href=\"https://doi.org/10.21203/rs.3.rs-750965/v1\">10.21203/rs.3.rs-750965/v1</a>.","ama":"Cao D, Shen X, Wang A, et al. Sharp kinetic acceleration potentials during mediated redox catalysis of insulators. <i>Research Square</i>. doi:<a href=\"https://doi.org/10.21203/rs.3.rs-750965/v1\">10.21203/rs.3.rs-750965/v1</a>","apa":"Cao, D., Shen, X., Wang, A., Yu, F., Wu, Y., Shi, S., … Chen, Y. (n.d.). Sharp kinetic acceleration potentials during mediated redox catalysis of insulators. <i>Research Square</i>. Research Square. <a href=\"https://doi.org/10.21203/rs.3.rs-750965/v1\">https://doi.org/10.21203/rs.3.rs-750965/v1</a>","ieee":"D. Cao <i>et al.</i>, “Sharp kinetic acceleration potentials during mediated redox catalysis of insulators,” <i>Research Square</i>. Research Square."},"acknowledgement":"This work was financially supported by the National Natural Science Foundation of China (51773092, 21975124, 11874254, 51802187, U2030206). S.A.F. is indebted to IST Austria for support. ","year":"2021","publisher":"Research Square","status":"public","_id":"9978","oa_version":"Preprint","file":[{"success":1,"file_id":"9979","date_created":"2021-08-31T14:02:19Z","file_size":1019662,"file_name":"2021_ResearchSquare_Cao.pdf","checksum":"1878e91c29d5769ed5a827b0b7addf00","access_level":"open_access","relation":"main_file","creator":"cchlebak","date_updated":"2021-08-31T14:02:19Z","content_type":"application/pdf"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"Redox mediators could catalyse otherwise slow and energy-inefficient cycling of Li-S and Li-O 2 batteries by shuttling electrons/holes between the electrode and the solid insulating storage materials. For mediators to work efficiently they need to oxidize the solid with fast kinetics yet the lowest possible overpotential. Here, we found that when the redox potentials of mediators are tuned via, e.g., Li + concentration in the electrolyte, they exhibit distinct threshold potentials, where the kinetics accelerate several-fold within a range as small as 10 mV. This phenomenon is independent of types of mediators and electrolyte. The acceleration originates from the overpotentials required to activate fast Li + /e – extraction and the following chemical step at specific abundant surface facets. Efficient redox catalysis at insulating solids requires therefore carefully considering the surface conditions of the storage materials and electrolyte-dependent redox potentials, which may be tuned by salt concentrations or solvents.","lang":"eng"}],"file_date_updated":"2021-08-31T14:02:19Z","date_updated":"2024-10-09T21:01:46Z","ddc":["541"],"date_published":"2021-08-18T00:00:00Z","has_accepted_license":"1","fulldoi":"https://doi.org/10.21203/rs.3.rs-750965/v1","keyword":["Catalysis","Energy engineering","Materials theory and modeling"],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"}}]