[{"tmp":{"image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"citation":{"ama":"Weinert S, Gimber N, Deuschel D, et al. Uncoupling endosomal CLC chloride/proton exchange causes severe neurodegeneration. <i>EMBO Journal</i>. 2020;39. doi:<a href=\"https://doi.org/10.15252/embj.2019103358\">10.15252/embj.2019103358</a>","apa":"Weinert, S., Gimber, N., Deuschel, D., Stuhlmann, T., Puchkov, D., Farsi, Z., … Jentsch, T. J. (2020). Uncoupling endosomal CLC chloride/proton exchange causes severe neurodegeneration. <i>EMBO Journal</i>. EMBO Press. <a href=\"https://doi.org/10.15252/embj.2019103358\">https://doi.org/10.15252/embj.2019103358</a>","ista":"Weinert S, Gimber N, Deuschel D, Stuhlmann T, Puchkov D, Farsi Z, Ludwig CF, Novarino G, López-Cayuqueo KI, Planells-Cases R, Jentsch TJ. 2020. Uncoupling endosomal CLC chloride/proton exchange causes severe neurodegeneration. EMBO Journal. 39, e103358.","ieee":"S. Weinert <i>et al.</i>, “Uncoupling endosomal CLC chloride/proton exchange causes severe neurodegeneration,” <i>EMBO Journal</i>, vol. 39. EMBO Press, 2020.","mla":"Weinert, Stefanie, et al. “Uncoupling Endosomal CLC Chloride/Proton Exchange Causes Severe Neurodegeneration.” <i>EMBO Journal</i>, vol. 39, e103358, EMBO Press, 2020, doi:<a href=\"https://doi.org/10.15252/embj.2019103358\">10.15252/embj.2019103358</a>.","short":"S. Weinert, N. Gimber, D. Deuschel, T. Stuhlmann, D. Puchkov, Z. Farsi, C.F. Ludwig, G. Novarino, K.I. López-Cayuqueo, R. Planells-Cases, T.J. Jentsch, EMBO Journal 39 (2020).","chicago":"Weinert, Stefanie, Niclas Gimber, Dorothea Deuschel, Till Stuhlmann, Dmytro Puchkov, Zohreh Farsi, Carmen F. Ludwig, et al. “Uncoupling Endosomal CLC Chloride/Proton Exchange Causes Severe Neurodegeneration.” <i>EMBO Journal</i>. EMBO Press, 2020. <a href=\"https://doi.org/10.15252/embj.2019103358\">https://doi.org/10.15252/embj.2019103358</a>."},"doi":"10.15252/embj.2019103358","scopus_import":"1","department":[{"_id":"GaNo"}],"volume":39,"_id":"7586","oa_version":"Published Version","quality_controlled":"1","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","external_id":{"pmid":["32118314"],"isi":["000517335000001"]},"day":"02","acknowledgement":"We thank T. Stauber and T. Breiderhoff for cloning expression constructs; K. Räbel, S. Hohensee, and C. Backhaus for technical assistance; R. Jahn (MPIbpc, Göttingen) for providing the equipment required for SV purification; and A\r\nWoehler (MDC, Berlin) for assistance with SV imaging. Supported, in part, by grants from the Deutsche Forschungsgemeinschaft (JE164/9-2, SFB740 TP C5, FOR 2625 (JE164/14-1), NeuroCure Cluster of Excellence), the European Research Council Advanced Grant CYTOVOLION (ERC 294435) and the Prix Louis-Jeantet de Médecine to TJJ, and Peter and Traudl Engelhorn fellowship to ZF.","file_date_updated":"2020-07-14T12:48:00Z","article_type":"original","publication_identifier":{"eissn":["1460-2075"],"issn":["0261-4189"]},"title":"Uncoupling endosomal CLC chloride/proton exchange causes severe neurodegeneration","date_updated":"2026-04-16T09:35:48Z","author":[{"first_name":"Stefanie","last_name":"Weinert","full_name":"Weinert, Stefanie"},{"full_name":"Gimber, Niclas","last_name":"Gimber","first_name":"Niclas"},{"full_name":"Deuschel, Dorothea","first_name":"Dorothea","last_name":"Deuschel"},{"full_name":"Stuhlmann, Till","last_name":"Stuhlmann","first_name":"Till"},{"full_name":"Puchkov, Dmytro","last_name":"Puchkov","first_name":"Dmytro"},{"last_name":"Farsi","first_name":"Zohreh","full_name":"Farsi, Zohreh"},{"first_name":"Carmen F.","last_name":"Ludwig","full_name":"Ludwig, Carmen F."},{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","full_name":"Novarino, Gaia","first_name":"Gaia","orcid":"0000-0002-7673-7178","last_name":"Novarino"},{"full_name":"López-Cayuqueo, Karen I.","first_name":"Karen I.","last_name":"López-Cayuqueo"},{"first_name":"Rosa","last_name":"Planells-Cases","full_name":"Planells-Cases, Rosa"},{"full_name":"Jentsch, Thomas J.","last_name":"Jentsch","first_name":"Thomas J."}],"language":[{"iso":"eng"}],"intvolume":"        39","abstract":[{"text":"CLC chloride/proton exchangers may support acidification of endolysosomes and raise their luminal Cl− concentration. Disruption of endosomal ClC‐3 causes severe neurodegeneration. To assess the importance of ClC‐3 Cl−/H+ exchange, we now generate Clcn3unc/unc mice in which ClC‐3 is converted into a Cl− channel. Unlike Clcn3−/− mice, Clcn3unc/unc mice appear normal owing to compensation by ClC‐4 with which ClC‐3 forms heteromers. ClC‐4 protein levels are strongly reduced in Clcn3−/−, but not in Clcn3unc/unc mice because ClC‐3unc binds and stabilizes ClC‐4 like wild‐type ClC‐3. Although mice lacking ClC‐4 appear healthy, its absence in Clcn3unc/unc/Clcn4−/− mice entails even stronger neurodegeneration than observed in Clcn3−/− mice. A fraction of ClC‐3 is found on synaptic vesicles, but miniature postsynaptic currents and synaptic vesicle acidification are not affected in Clcn3unc/unc or Clcn3−/− mice before neurodegeneration sets in. Both, Cl−/H+‐exchange activity and the stabilizing effect on ClC‐4, are central to the biological function of ClC‐3.","lang":"eng"}],"date_created":"2020-03-15T23:00:55Z","pmid":1,"has_accepted_license":"1","publisher":"EMBO Press","publication":"EMBO Journal","status":"public","month":"03","ddc":["570"],"isi":1,"type":"journal_article","oa":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","article_number":"e103358","date_published":"2020-03-02T00:00:00Z","publication_status":"published","article_processing_charge":"No","year":"2020","file":[{"file_size":12243278,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","date_created":"2020-03-23T13:51:11Z","file_name":"2020_EMBO_Weinert.pdf","creator":"dernst","checksum":"82750a7a93e3740decbce8474004111a","date_updated":"2020-07-14T12:48:00Z","file_id":"7615"}]},{"_id":"7593","oa_version":"Published Version","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.1101/751958","open_access":"1"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.7554/elife.51512","citation":{"chicago":"Moon, Hyang Mi, Simon Hippenmeyer, Liqun Luo, and Anthony Wynshaw-Boris. “LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated Cell Membrane Contractility.” <i>ELife</i>. eLife Sciences Publications, 2020. <a href=\"https://doi.org/10.7554/elife.51512\">https://doi.org/10.7554/elife.51512</a>.","short":"H.M. Moon, S. Hippenmeyer, L. Luo, A. Wynshaw-Boris, ELife 9 (2020).","mla":"Moon, Hyang Mi, et al. “LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated Cell Membrane Contractility.” <i>ELife</i>, vol. 9, 51512, eLife Sciences Publications, 2020, doi:<a href=\"https://doi.org/10.7554/elife.51512\">10.7554/elife.51512</a>.","ieee":"H. M. Moon, S. Hippenmeyer, L. Luo, and A. Wynshaw-Boris, “LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility,” <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.","apa":"Moon, H. M., Hippenmeyer, S., Luo, L., &#38; Wynshaw-Boris, A. (2020). LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.51512\">https://doi.org/10.7554/elife.51512</a>","ista":"Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. 2020. LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. eLife. 9, 51512.","ama":"Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. <i>eLife</i>. 2020;9. doi:<a href=\"https://doi.org/10.7554/elife.51512\">10.7554/elife.51512</a>"},"department":[{"_id":"SiHi"}],"scopus_import":"1","volume":9,"title":"LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility","date_updated":"2023-08-18T07:06:31Z","author":[{"full_name":"Moon, Hyang Mi","first_name":"Hyang Mi","last_name":"Moon"},{"id":"37B36620-F248-11E8-B48F-1D18A9856A87","full_name":"Hippenmeyer, Simon","first_name":"Simon","orcid":"0000-0003-2279-1061","last_name":"Hippenmeyer"},{"last_name":"Luo","first_name":"Liqun","full_name":"Luo, Liqun"},{"full_name":"Wynshaw-Boris, Anthony","first_name":"Anthony","last_name":"Wynshaw-Boris"}],"external_id":{"isi":["000522835800001"],"pmid":["32159512"]},"day":"11","article_type":"original","file_date_updated":"2020-09-24T07:03:20Z","publication_identifier":{"issn":["2050-084X"]},"month":"03","ddc":["570"],"status":"public","publication":"eLife","language":[{"iso":"eng"}],"intvolume":"         9","has_accepted_license":"1","date_created":"2020-03-20T13:16:41Z","abstract":[{"lang":"eng","text":"Heterozygous loss of human PAFAH1B1 (coding for LIS1) results in the disruption of neurogenesis and neuronal migration via dysregulation of microtubule (MT) stability and dynein motor function/localization that alters mitotic spindle orientation, chromosomal segregation, and nuclear migration. Recently, human induced pluripotent stem cell (iPSC) models revealed an important role for LIS1 in controlling the length of terminal cell divisions of outer radial glial (oRG) progenitors, suggesting cellular functions of LIS1 in regulating neural progenitor cell (NPC) daughter cell separation. Here we examined the late mitotic stages NPCs in vivo and mouse embryonic fibroblasts (MEFs) in vitro from Pafah1b1-deficient mutants. Pafah1b1-deficient neocortical NPCs and MEFs similarly exhibited cleavage plane displacement with mislocalization of furrow-associated markers, associated with actomyosin dysfunction and cell membrane hyper-contractility. Thus, it suggests LIS1 acts as a key molecular link connecting MTs/dynein and actomyosin, ensuring that cell membrane contractility is tightly controlled to execute proper daughter cell separation."}],"pmid":1,"publisher":"eLife Sciences Publications","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_published":"2020-03-11T00:00:00Z","article_number":"51512","publication_status":"published","article_processing_charge":"No","year":"2020","file":[{"date_updated":"2020-09-24T07:03:20Z","file_id":"8567","success":1,"file_size":15089438,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","date_created":"2020-09-24T07:03:20Z","creator":"dernst","checksum":"396ceb2dd10b102ef4e699666b9342c3","file_name":"2020_elife_Moon.pdf"}],"isi":1,"type":"journal_article","oa":1},{"type":"journal_article","ec_funded":1,"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2020-03-20T00:00:00Z","article_number":"013353","publication_status":"published","year":"2020","article_processing_charge":"No","file":[{"access_level":"open_access","content_type":"application/pdf","file_size":1436735,"file_name":"2020_PhysRevResearch_Gotfryd.pdf","creator":"dernst","checksum":"1be551fd5f5583635076017d7391ffdc","date_created":"2020-03-23T10:18:38Z","relation":"main_file","date_updated":"2020-07-14T12:48:00Z","file_id":"7610"}],"language":[{"iso":"eng"}],"intvolume":"         2","abstract":[{"text":"The concept of the entanglement between spin and orbital degrees of freedom plays a crucial role in our understanding of various phases and exotic ground states in a broad class of materials, including orbitally ordered materials and spin liquids. We investigate how the spin-orbital entanglement in a Mott insulator depends on the value of the spin-orbit coupling of the relativistic origin. To this end, we numerically diagonalize a one-dimensional spin-orbital model with Kugel-Khomskii exchange interactions between spins and orbitals on different sites supplemented by the on-site spin-orbit coupling. In the regime of small spin-orbit coupling with regard to the spin-orbital exchange, the ground state to a large extent resembles the one obtained in the limit of vanishing spin-orbit coupling. On the other hand, for large spin-orbit coupling the ground state can, depending on the model parameters, either still show negligible spin-orbital entanglement or evolve to a highly spin-orbitally-entangled phase with completely distinct properties that are described by an effective XXZ model. The presented results suggest that (i) the spin-orbital entanglement may be induced by large on-site spin-orbit coupling, as found in the 5d transition metal oxides, such as the iridates; (ii) for Mott insulators with weak spin-orbit coupling of Ising type, such as, e.g., the alkali hyperoxides, the effects of the spin-orbit coupling on the ground state can, in the first order of perturbation theory, be neglected.","lang":"eng"}],"date_created":"2020-03-20T15:21:10Z","has_accepted_license":"1","publisher":"American Physical Society","publication":"Physical Review Research","status":"public","month":"03","ddc":["530"],"issue":"1","day":"20","article_type":"original","file_date_updated":"2020-07-14T12:48:00Z","title":"How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator","date_updated":"2024-10-21T06:02:21Z","author":[{"full_name":"Gotfryd, Dorota","last_name":"Gotfryd","first_name":"Dorota"},{"full_name":"Paerschke, Ekaterina","id":"8275014E-6063-11E9-9B7F-6338E6697425","last_name":"Paerschke","orcid":"0000-0003-0853-8182","first_name":"Ekaterina"},{"full_name":"Chaloupka, Jiri","last_name":"Chaloupka","first_name":"Jiri"},{"last_name":"Oles","first_name":"Andrzej M.","full_name":"Oles, Andrzej M."},{"first_name":"Krzysztof","last_name":"Wohlfeld","full_name":"Wohlfeld, Krzysztof"}],"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"mla":"Gotfryd, Dorota, et al. “How Spin-Orbital Entanglement Depends on the Spin-Orbit Coupling in a Mott Insulator.” <i>Physical Review Research</i>, vol. 2, no. 1, 013353, American Physical Society, 2020, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.2.013353\">10.1103/PhysRevResearch.2.013353</a>.","ieee":"D. Gotfryd, E. Paerschke, J. Chaloupka, A. M. Oles, and K. Wohlfeld, “How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator,” <i>Physical Review Research</i>, vol. 2, no. 1. American Physical Society, 2020.","apa":"Gotfryd, D., Paerschke, E., Chaloupka, J., Oles, A. M., &#38; Wohlfeld, K. (2020). How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.2.013353\">https://doi.org/10.1103/PhysRevResearch.2.013353</a>","ista":"Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. 2020. How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator. Physical Review Research. 2(1), 013353.","ama":"Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator. <i>Physical Review Research</i>. 2020;2(1). doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.2.013353\">10.1103/PhysRevResearch.2.013353</a>","chicago":"Gotfryd, Dorota, Ekaterina Paerschke, Jiri Chaloupka, Andrzej M. Oles, and Krzysztof Wohlfeld. “How Spin-Orbital Entanglement Depends on the Spin-Orbit Coupling in a Mott Insulator.” <i>Physical Review Research</i>. American Physical Society, 2020. <a href=\"https://doi.org/10.1103/PhysRevResearch.2.013353\">https://doi.org/10.1103/PhysRevResearch.2.013353</a>.","short":"D. Gotfryd, E. Paerschke, J. Chaloupka, A.M. Oles, K. Wohlfeld, Physical Review Research 2 (2020)."},"doi":"10.1103/PhysRevResearch.2.013353","department":[{"_id":"MiLe"}],"scopus_import":"1","volume":2,"_id":"7594","oa_version":"Published Version","quality_controlled":"1"},{"quality_controlled":"1","oa_version":"Preprint","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/755504"}],"_id":"7600","volume":6,"scopus_import":"1","department":[{"_id":"JiFr"}],"citation":{"chicago":"Tan, Shutang, Xixi Zhang, Wei Kong, Xiao-Li Yang, Gergely Molnar, Zuzana Vondráková, Roberta Filepová, Jan Petrášek, Jiří Friml, and Hong-Wei Xue. “The Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates PIN-Mediated Auxin Efflux in Arabidopsis.” <i>Nature Plants</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41477-020-0648-9\">https://doi.org/10.1038/s41477-020-0648-9</a>.","short":"S. Tan, X. Zhang, W. Kong, X.-L. Yang, G. Molnar, Z. Vondráková, R. Filepová, J. Petrášek, J. Friml, H.-W. Xue, Nature Plants 6 (2020) 556–569.","ieee":"S. Tan <i>et al.</i>, “The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis,” <i>Nature Plants</i>, vol. 6. Springer Nature, pp. 556–569, 2020.","mla":"Tan, Shutang, et al. “The Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates PIN-Mediated Auxin Efflux in Arabidopsis.” <i>Nature Plants</i>, vol. 6, Springer Nature, 2020, pp. 556–69, doi:<a href=\"https://doi.org/10.1038/s41477-020-0648-9\">10.1038/s41477-020-0648-9</a>.","apa":"Tan, S., Zhang, X., Kong, W., Yang, X.-L., Molnar, G., Vondráková, Z., … Xue, H.-W. (2020). The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. <i>Nature Plants</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41477-020-0648-9\">https://doi.org/10.1038/s41477-020-0648-9</a>","ista":"Tan S, Zhang X, Kong W, Yang X-L, Molnar G, Vondráková Z, Filepová R, Petrášek J, Friml J, Xue H-W. 2020. The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 6, 556–569.","ama":"Tan S, Zhang X, Kong W, et al. The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. <i>Nature Plants</i>. 2020;6:556-569. doi:<a href=\"https://doi.org/10.1038/s41477-020-0648-9\">10.1038/s41477-020-0648-9</a>"},"doi":"10.1038/s41477-020-0648-9","project":[{"call_identifier":"H2020","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985"},{"grant_number":"723-2015","name":"Molecular Mechanism underlying Salicylic Acid Regulation of Endocytic Trafficking in Arabidopsis","_id":"256FEF10-B435-11E9-9278-68D0E5697425"}],"author":[{"id":"2DE75584-F248-11E8-B48F-1D18A9856A87","full_name":"Tan, Shutang","first_name":"Shutang","orcid":"0000-0002-0471-8285","last_name":"Tan"},{"full_name":"Zhang, Xixi","id":"61A66458-47E9-11EA-85BA-8AEAAF14E49A","last_name":"Zhang","orcid":"0000-0001-7048-4627","first_name":"Xixi"},{"last_name":"Kong","first_name":"Wei","full_name":"Kong, Wei"},{"last_name":"Yang","first_name":"Xiao-Li","full_name":"Yang, Xiao-Li"},{"id":"34F1AF46-F248-11E8-B48F-1D18A9856A87","full_name":"Molnar, Gergely","first_name":"Gergely","last_name":"Molnar"},{"full_name":"Vondráková, Zuzana","first_name":"Zuzana","last_name":"Vondráková"},{"full_name":"Filepová, Roberta","first_name":"Roberta","last_name":"Filepová"},{"last_name":"Petrášek","first_name":"Jan","full_name":"Petrášek, Jan"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří"},{"full_name":"Xue, Hong-Wei","first_name":"Hong-Wei","last_name":"Xue"}],"title":"The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis","date_updated":"2026-04-02T11:50:26Z","day":"01","related_material":{"link":[{"url":"https://doi.org/10.1038/s41477-020-0719-y","relation":"erratum"}]},"article_type":"original","publication_identifier":{"eissn":["2055-0278"]},"external_id":{"isi":["000531787500006"],"pmid":["32393881"]},"status":"public","month":"05","publication":"Nature Plants","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"publisher":"Springer Nature","pmid":1,"date_created":"2020-03-21T16:34:16Z","abstract":[{"text":"Directional intercellular transport of the phytohormone auxin mediated by PIN FORMED (PIN) efflux carriers plays essential roles in both coordinating patterning processes and integrating multiple external cues by rapidly redirecting auxin fluxes. Multilevel regulations of PIN activity under internal and external cues are complicated; however, the underlying molecular mechanism remains elusive. Here we demonstrate that 3’-Phosphoinositide-Dependent Protein Kinase1 (PDK1), which is conserved in plants and mammals, functions as a molecular hub integrating the upstream lipid signalling and the downstream substrate activity through phosphorylation. Genetic analysis uncovers that loss-of-function Arabidopsis mutant pdk1.1 pdk1.2 exhibits a plethora of abnormalities in organogenesis and growth, due to the defective PIN-dependent auxin transport. Further cellular and biochemical analyses reveal that PDK1 phosphorylates D6 Protein Kinase to facilitate its activity towards PIN proteins. Our studies establish a lipid-dependent phosphorylation cascade connecting membrane composition-based cellular signalling with plant growth and patterning by regulating morphogenetic auxin fluxes.","lang":"eng"}],"intvolume":"         6","language":[{"iso":"eng"}],"publication_status":"published","article_processing_charge":"No","year":"2020","date_published":"2020-05-01T00:00:00Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","page":"556-569","oa":1,"ec_funded":1,"isi":1,"type":"journal_article"},{"file":[{"checksum":"57c37209f7b6712ced86c0f11b2be74e","creator":"dernst","file_name":"2020_FrontiersPlants_Nimeth.pdf","relation":"main_file","date_created":"2020-03-23T09:03:40Z","content_type":"application/pdf","access_level":"open_access","file_size":507414,"file_id":"7607","date_updated":"2020-07-14T12:48:01Z"}],"publication_status":"published","article_processing_charge":"No","year":"2020","article_number":"91","date_published":"2020-02-19T00:00:00Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","oa":1,"isi":1,"type":"journal_article","month":"02","ddc":["580"],"publication":"Frontiers in Plant Science","status":"public","publisher":"Frontiers","abstract":[{"lang":"eng","text":"Plants are exposed to a variety of abiotic and biotic stresses that may result in DNA damage. Endogenous processes - such as DNA replication, DNA recombination, respiration, or photosynthesis - are also a threat to DNA integrity. It is therefore essential to understand the strategies plants have developed for DNA damage detection, signaling, and repair. Alternative splicing (AS) is a key post-transcriptional process with a role in regulation of gene expression. Recent studies demonstrate that the majority of intron-containing genes in plants are alternatively spliced, highlighting the importance of AS in plant development and stress response. Not only does AS ensure a versatile proteome and influence the abundance and availability of proteins greatly, it has also emerged as an important player in the DNA damage response (DDR) in animals. Despite extensive studies of DDR carried out in plants, its regulation at the level of AS has not been comprehensively addressed. Here, we provide some insights into the interplay between AS and DDR in plants."}],"has_accepted_license":"1","date_created":"2020-03-22T23:00:46Z","intvolume":"        11","language":[{"iso":"eng"}],"author":[{"full_name":"Nimeth, Barbara Anna","last_name":"Nimeth","first_name":"Barbara Anna"},{"full_name":"Riegler, Stefan","id":"FF6018E0-D806-11E9-8E43-0B14E6697425","first_name":"Stefan","last_name":"Riegler","orcid":"0000-0003-3413-1343"},{"last_name":"Kalyna","first_name":"Maria","full_name":"Kalyna, Maria"}],"title":"Alternative splicing and DNA damage response in plants","date_updated":"2026-04-16T08:28:17Z","day":"19","article_type":"original","file_date_updated":"2020-07-14T12:48:01Z","publication_identifier":{"eissn":["1664-462X"]},"external_id":{"isi":["000518903600001"]},"quality_controlled":"1","oa_version":"Published Version","_id":"7603","volume":11,"scopus_import":"1","department":[{"_id":"FyKo"}],"doi":"10.3389/fpls.2020.00091","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"apa":"Nimeth, B. A., Riegler, S., &#38; Kalyna, M. (2020). Alternative splicing and DNA damage response in plants. <i>Frontiers in Plant Science</i>. Frontiers. <a href=\"https://doi.org/10.3389/fpls.2020.00091\">https://doi.org/10.3389/fpls.2020.00091</a>","ama":"Nimeth BA, Riegler S, Kalyna M. Alternative splicing and DNA damage response in plants. <i>Frontiers in Plant Science</i>. 2020;11. doi:<a href=\"https://doi.org/10.3389/fpls.2020.00091\">10.3389/fpls.2020.00091</a>","ista":"Nimeth BA, Riegler S, Kalyna M. 2020. Alternative splicing and DNA damage response in plants. Frontiers in Plant Science. 11, 91.","mla":"Nimeth, Barbara Anna, et al. “Alternative Splicing and DNA Damage Response in Plants.” <i>Frontiers in Plant Science</i>, vol. 11, 91, Frontiers, 2020, doi:<a href=\"https://doi.org/10.3389/fpls.2020.00091\">10.3389/fpls.2020.00091</a>.","ieee":"B. A. Nimeth, S. Riegler, and M. Kalyna, “Alternative splicing and DNA damage response in plants,” <i>Frontiers in Plant Science</i>, vol. 11. Frontiers, 2020.","short":"B.A. Nimeth, S. Riegler, M. Kalyna, Frontiers in Plant Science 11 (2020).","chicago":"Nimeth, Barbara Anna, Stefan Riegler, and Maria Kalyna. “Alternative Splicing and DNA Damage Response in Plants.” <i>Frontiers in Plant Science</i>. Frontiers, 2020. <a href=\"https://doi.org/10.3389/fpls.2020.00091\">https://doi.org/10.3389/fpls.2020.00091</a>."}},{"page":"15:1-15:16","type":"conference","oa":1,"article_processing_charge":"No","year":"2020","publication_status":"published","file":[{"date_updated":"2020-07-14T12:48:01Z","file_id":"7609","content_type":"application/pdf","access_level":"open_access","file_size":13074131,"checksum":"d66f07ecb609d9f02433e39f80a447e9","creator":"dernst","file_name":"2019_LIPIcs_Alistarh.pdf","relation":"main_file","date_created":"2020-03-23T09:22:48Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2020-02-01T00:00:00Z","alternative_title":["LIPIcs"],"abstract":[{"lang":"eng","text":"Union-Find (or Disjoint-Set Union) is one of the fundamental problems in computer science; it has been well-studied from both theoretical and practical perspectives in the sequential case. Recently, there has been mounting interest in analyzing this problem in the concurrent scenario, and several asymptotically-efficient algorithms have been proposed. Yet, to date, there is very little known about the practical performance of concurrent Union-Find. This work addresses this gap. We evaluate and analyze the performance of several concurrent Union-Find algorithms and optimization strategies across a wide range of platforms (Intel, AMD, and ARM) and workloads (social, random, and road networks, as well as integrations into more complex algorithms). We first observe that, due to the limited computational cost, the number of induced cache misses is the critical determining factor for the performance of existing algorithms. We introduce new techniques to reduce this cost by storing node priorities implicitly and by using plain reads and writes in a way that does not affect the correctness of the algorithms. Finally, we show that Union-Find implementations are an interesting application for Transactional Memory (TM): one of the fastest algorithm variants we discovered is a sequential one that uses coarse-grained locking with the lock elision optimization to reduce synchronization cost and increase scalability. "}],"date_created":"2020-03-22T23:00:46Z","has_accepted_license":"1","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","language":[{"iso":"eng"}],"intvolume":"       153","publication":"23rd International Conference on Principles of Distributed Systems","ddc":["000"],"month":"02","corr_author":"1","status":"public","file_date_updated":"2020-07-14T12:48:01Z","publication_identifier":{"issn":["1868-8969"],"isbn":["9783959771337"]},"day":"01","arxiv":1,"license":"https://creativecommons.org/licenses/by/3.0/","conference":{"end_date":"2019-12-19","start_date":"2019-12-17","name":"OPODIS: International Conference on Principles of Distributed Systems","location":"Neuchatal, Switzerland"},"external_id":{"arxiv":["1911.06347"]},"author":[{"first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X","last_name":"Alistarh","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian"},{"full_name":"Fedorov, Alexander","first_name":"Alexander","last_name":"Fedorov"},{"full_name":"Koval, Nikita","id":"2F4DB10C-F248-11E8-B48F-1D18A9856A87","first_name":"Nikita","last_name":"Koval"}],"date_updated":"2025-07-10T11:54:46Z","title":"In search of the fastest concurrent union-find algorithm","scopus_import":"1","department":[{"_id":"DaAl"}],"volume":153,"tmp":{"name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)","legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode","short":"CC BY (3.0)","image":"/images/cc_by.png"},"doi":"10.4230/LIPIcs.OPODIS.2019.15","citation":{"ama":"Alistarh D-A, Fedorov A, Koval N. In search of the fastest concurrent union-find algorithm. In: <i>23rd International Conference on Principles of Distributed Systems</i>. Vol 153. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020:15:1-15:16. doi:<a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2019.15\">10.4230/LIPIcs.OPODIS.2019.15</a>","ista":"Alistarh D-A, Fedorov A, Koval N. 2020. In search of the fastest concurrent union-find algorithm. 23rd International Conference on Principles of Distributed Systems. OPODIS: International Conference on Principles of Distributed Systems, LIPIcs, vol. 153, 15:1-15:16.","apa":"Alistarh, D.-A., Fedorov, A., &#38; Koval, N. (2020). In search of the fastest concurrent union-find algorithm. In <i>23rd International Conference on Principles of Distributed Systems</i> (Vol. 153, p. 15:1-15:16). Neuchatal, Switzerland: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2019.15\">https://doi.org/10.4230/LIPIcs.OPODIS.2019.15</a>","ieee":"D.-A. Alistarh, A. Fedorov, and N. Koval, “In search of the fastest concurrent union-find algorithm,” in <i>23rd International Conference on Principles of Distributed Systems</i>, Neuchatal, Switzerland, 2020, vol. 153, p. 15:1-15:16.","mla":"Alistarh, Dan-Adrian, et al. “In Search of the Fastest Concurrent Union-Find Algorithm.” <i>23rd International Conference on Principles of Distributed Systems</i>, vol. 153, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, p. 15:1-15:16, doi:<a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2019.15\">10.4230/LIPIcs.OPODIS.2019.15</a>.","short":"D.-A. Alistarh, A. Fedorov, N. Koval, in:, 23rd International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, p. 15:1-15:16.","chicago":"Alistarh, Dan-Adrian, Alexander Fedorov, and Nikita Koval. “In Search of the Fastest Concurrent Union-Find Algorithm.” In <i>23rd International Conference on Principles of Distributed Systems</i>, 153:15:1-15:16. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020. <a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2019.15\">https://doi.org/10.4230/LIPIcs.OPODIS.2019.15</a>."},"_id":"7605","oa_version":"Published Version","quality_controlled":"1"},{"volume":110,"department":[{"_id":"RoSe"}],"scopus_import":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"chicago":"Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting through Singular Potentials.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s11005-020-01286-w\">https://doi.org/10.1007/s11005-020-01286-w</a>.","short":"S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.","mla":"Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting through Singular Potentials.” <i>Letters in Mathematical Physics</i>, vol. 110, Springer Nature, 2020, pp. 2143–74, doi:<a href=\"https://doi.org/10.1007/s11005-020-01286-w\">10.1007/s11005-020-01286-w</a>.","ieee":"S. A. E. Rademacher, “Central limit theorem for Bose gases interacting through singular potentials,” <i>Letters in Mathematical Physics</i>, vol. 110. Springer Nature, pp. 2143–2174, 2020.","ista":"Rademacher SAE. 2020. Central limit theorem for Bose gases interacting through singular potentials. Letters in Mathematical Physics. 110, 2143–2174.","ama":"Rademacher SAE. Central limit theorem for Bose gases interacting through singular potentials. <i>Letters in Mathematical Physics</i>. 2020;110:2143-2174. doi:<a href=\"https://doi.org/10.1007/s11005-020-01286-w\">10.1007/s11005-020-01286-w</a>","apa":"Rademacher, S. A. E. (2020). Central limit theorem for Bose gases interacting through singular potentials. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-020-01286-w\">https://doi.org/10.1007/s11005-020-01286-w</a>"},"doi":"10.1007/s11005-020-01286-w","project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"quality_controlled":"1","oa_version":"Published Version","_id":"7611","day":"12","article_type":"original","file_date_updated":"2020-11-20T12:04:26Z","publication_identifier":{"eissn":["1573-0530"],"issn":["0377-9017"]},"acknowledgement":"Simone Rademacher acknowledges partial support from the NCCR SwissMAP. This project has received\r\nfunding from the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).\r\nS.R. would like to thank Benjamin Schlein for many fruitful discussions.","external_id":{"isi":["000551556000006"]},"author":[{"first_name":"Simone Anna Elvira","last_name":"Rademacher","orcid":"0000-0001-5059-4466","full_name":"Rademacher, Simone Anna Elvira","id":"856966FE-A408-11E9-977E-802DE6697425"}],"title":"Central limit theorem for Bose gases interacting through singular potentials","date_updated":"2025-04-14T07:44:03Z","publisher":"Springer Nature","has_accepted_license":"1","abstract":[{"lang":"eng","text":"We consider a system of N bosons in the limit N→∞, interacting through singular potentials. For initial data exhibiting Bose–Einstein condensation, the many-body time evolution is well approximated through a quadratic fluctuation dynamics around a cubic nonlinear Schrödinger equation of the condensate wave function. We show that these fluctuations satisfy a (multi-variate) central limit theorem."}],"date_created":"2020-03-23T11:11:47Z","intvolume":"       110","language":[{"iso":"eng"}],"publication":"Letters in Mathematical Physics","status":"public","corr_author":"1","ddc":["510"],"month":"03","page":"2143-2174","oa":1,"isi":1,"type":"journal_article","ec_funded":1,"file":[{"date_created":"2020-11-20T12:04:26Z","relation":"main_file","file_name":"2020_LettersMathPhysics_Rademacher.pdf","checksum":"3bdd41f10ad947b67a45b98f507a7d4a","creator":"dernst","file_size":478683,"access_level":"open_access","content_type":"application/pdf","file_id":"8784","success":1,"date_updated":"2020-11-20T12:04:26Z"}],"publication_status":"published","year":"2020","article_processing_charge":"Yes (via OA deal)","date_published":"2020-03-12T00:00:00Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1"},{"date_updated":"2025-10-09T08:23:15Z","title":"Quantum Hellinger distances revisited","author":[{"first_name":"Jozsef","last_name":"Pitrik","full_name":"Pitrik, Jozsef"},{"full_name":"Virosztek, Daniel","id":"48DB45DA-F248-11E8-B48F-1D18A9856A87","last_name":"Virosztek","orcid":"0000-0003-1109-5511","first_name":"Daniel"}],"external_id":{"isi":["000551556000002"],"arxiv":["1903.10455"]},"arxiv":1,"article_type":"original","acknowledgement":"J. Pitrik was supported by the Hungarian Academy of Sciences Lendület-Momentum Grant for Quantum\r\nInformation Theory, No. 96 141, and by the Hungarian National Research, Development and Innovation\r\nOffice (NKFIH) via Grants Nos. K119442, K124152 and KH129601. D. Virosztek was supported by the\r\nISTFELLOW program of the Institute of Science and Technology Austria (Project Code IC1027FELL01),\r\nby the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSklodowska-Curie Grant Agreement No. 846294, and partially supported by the Hungarian National\r\nResearch, Development and Innovation Office (NKFIH) via Grants Nos. K124152 and KH129601.\r\nWe are grateful to Milán Mosonyi for drawing our attention to Ref.’s [6,14,15,17,\r\n20,21], for comments on earlier versions of this paper, and for several discussions on the topic. We are\r\nalso grateful to Miklós Pálfia for several discussions; to László Erdös for his essential suggestions on the\r\nstructure and highlights of this paper, and for his comments on earlier versions; and to the anonymous\r\nreferee for his/her valuable comments and suggestions.","publication_identifier":{"eissn":["1573-0530"],"issn":["0377-9017"]},"day":"01","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1903.10455"}],"quality_controlled":"1","oa_version":"Preprint","_id":"7618","citation":{"short":"J. Pitrik, D. Virosztek, Letters in Mathematical Physics 110 (2020) 2039–2052.","chicago":"Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s11005-020-01282-0\">https://doi.org/10.1007/s11005-020-01282-0</a>.","apa":"Pitrik, J., &#38; Virosztek, D. (2020). Quantum Hellinger distances revisited. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-020-01282-0\">https://doi.org/10.1007/s11005-020-01282-0</a>","ama":"Pitrik J, Virosztek D. Quantum Hellinger distances revisited. <i>Letters in Mathematical Physics</i>. 2020;110(8):2039-2052. doi:<a href=\"https://doi.org/10.1007/s11005-020-01282-0\">10.1007/s11005-020-01282-0</a>","ista":"Pitrik J, Virosztek D. 2020. Quantum Hellinger distances revisited. Letters in Mathematical Physics. 110(8), 2039–2052.","ieee":"J. Pitrik and D. Virosztek, “Quantum Hellinger distances revisited,” <i>Letters in Mathematical Physics</i>, vol. 110, no. 8. Springer Nature, pp. 2039–2052, 2020.","mla":"Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.” <i>Letters in Mathematical Physics</i>, vol. 110, no. 8, Springer Nature, 2020, pp. 2039–52, doi:<a href=\"https://doi.org/10.1007/s11005-020-01282-0\">10.1007/s11005-020-01282-0</a>."},"doi":"10.1007/s11005-020-01282-0","project":[{"name":"Geometric study of Wasserstein spaces and free probability","grant_number":"846294","call_identifier":"H2020","_id":"26A455A6-B435-11E9-9278-68D0E5697425"},{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"volume":110,"department":[{"_id":"LaEr"}],"scopus_import":"1","date_published":"2020-08-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2020","article_processing_charge":"No","publication_status":"published","oa":1,"ec_funded":1,"type":"journal_article","isi":1,"page":"2039-2052","corr_author":"1","month":"08","status":"public","publication":"Letters in Mathematical Physics","issue":"8","intvolume":"       110","language":[{"iso":"eng"}],"publisher":"Springer Nature","date_created":"2020-03-25T15:57:48Z","abstract":[{"lang":"eng","text":"This short note aims to study quantum Hellinger distances investigated recently by Bhatia et al. (Lett Math Phys 109:1777–1804, 2019) with a particular emphasis on barycenters. We introduce the family of generalized quantum Hellinger divergences that are of the form ϕ(A,B)=Tr((1−c)A+cB−AσB), where σ is an arbitrary Kubo–Ando mean, and c∈(0,1) is the weight of σ. We note that these divergences belong to the family of maximal quantum f-divergences, and hence are jointly convex, and satisfy the data processing inequality. We derive a characterization of the barycenter of finitely many positive definite operators for these generalized quantum Hellinger divergences. We note that the characterization of the barycenter as the weighted multivariate 1/2-power mean, that was claimed in Bhatia et al. (2019), is true in the case of commuting operators, but it is not correct in the general case. "}]},{"date_published":"2020-05-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","year":"2020","article_processing_charge":"No","oa":1,"isi":1,"type":"journal_article","ec_funded":1,"page":"1644-1664","publication":"The Plant Cell","corr_author":"1","ddc":["580"],"month":"05","status":"public","acknowledged_ssus":[{"_id":"Bio"}],"issue":"5","intvolume":"        32","language":[{"iso":"eng"}],"publisher":"American Society of Plant Biologists","pmid":1,"date_created":"2020-03-28T07:39:22Z","abstract":[{"lang":"eng","text":"Cell polarity is a fundamental feature of all multicellular organisms. In plants, prominent cell polarity markers are PIN auxin transporters crucial for plant development. To identify novel components involved in cell polarity establishment and maintenance, we carried out a forward genetic screening with PIN2:PIN1-HA;pin2 Arabidopsis plants, which ectopically express predominantly basally localized PIN1 in the root epidermal cells leading to agravitropic root growth. From the screen, we identified the regulator of PIN polarity 12 (repp12) mutation, which restored gravitropic root growth and caused PIN1-HA polarity switch from basal to apical side of root epidermal cells. Complementation experiments established the repp12 causative mutation as an amino acid substitution in Aminophospholipid ATPase3 (ALA3), a phospholipid flippase with predicted function in vesicle formation. ala3 T-DNA mutants show defects in many auxin-regulated processes, in asymmetric auxin distribution and in PIN trafficking. Analysis of quintuple and sextuple mutants confirmed a crucial role of ALA proteins in regulating plant development and in PIN trafficking and polarity. Genetic and physical interaction studies revealed that ALA3 functions together with GNOM and BIG3 ARF GEFs. Taken together, our results identified ALA3 flippase as an important interactor and regulator of ARF GEF functioning in PIN polarity, trafficking and auxin-mediated development."}],"title":"Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters","date_updated":"2026-06-18T19:24:19Z","author":[{"orcid":"0000-0001-7048-4627","last_name":"Zhang","first_name":"Xixi","id":"61A66458-47E9-11EA-85BA-8AEAAF14E49A","full_name":"Zhang, Xixi"},{"full_name":"Adamowski, Maciek","id":"45F536D2-F248-11E8-B48F-1D18A9856A87","first_name":"Maciek","last_name":"Adamowski","orcid":"0000-0001-6463-5257"},{"id":"44E59624-F248-11E8-B48F-1D18A9856A87","full_name":"Marhavá, Petra","last_name":"Marhavá","first_name":"Petra"},{"last_name":"Tan","orcid":"0000-0002-0471-8285","first_name":"Shutang","full_name":"Tan, Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87"},{"id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","full_name":"Zhang, Yuzhou","first_name":"Yuzhou","orcid":"0000-0003-2627-6956","last_name":"Zhang"},{"last_name":"Rodriguez Solovey","orcid":"0000-0002-7244-7237","first_name":"Lesia","full_name":"Rodriguez Solovey, Lesia","id":"3922B506-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Zwiewka","first_name":"Marta","full_name":"Zwiewka, Marta"},{"first_name":"Vendula","last_name":"Pukyšová","full_name":"Pukyšová, Vendula"},{"full_name":"Sánchez, Adrià Sans","first_name":"Adrià Sans","last_name":"Sánchez"},{"last_name":"Raxwal","first_name":"Vivek Kumar","full_name":"Raxwal, Vivek Kumar"},{"full_name":"Hardtke, Christian S.","last_name":"Hardtke","first_name":"Christian S."},{"full_name":"Nodzynski, Tomasz","first_name":"Tomasz","last_name":"Nodzynski"},{"full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","last_name":"Friml","orcid":"0000-0002-8302-7596"}],"external_id":{"pmid":["32193204"],"isi":["000545741500030"]},"day":"01","article_type":"original","publication_identifier":{"eissn":["1532-298X"],"issn":["1040-4651"]},"quality_controlled":"1","oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1105/tpc.19.00869"}],"_id":"7619","doi":"10.1105/tpc.19.00869","citation":{"short":"X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey, M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski, J. Friml, The Plant Cell 32 (2020) 1644–1664.","chicago":"Zhang, Xixi, Maciek Adamowski, Petra Marhavá, Shutang Tan, Yuzhou Zhang, Lesia Rodriguez Solovey, Marta Zwiewka, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” <i>The Plant Cell</i>. American Society of Plant Biologists, 2020. <a href=\"https://doi.org/10.1105/tpc.19.00869\">https://doi.org/10.1105/tpc.19.00869</a>.","apa":"Zhang, X., Adamowski, M., Marhavá, P., Tan, S., Zhang, Y., Rodriguez Solovey, L., … Friml, J. (2020). Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. <i>The Plant Cell</i>. American Society of Plant Biologists. <a href=\"https://doi.org/10.1105/tpc.19.00869\">https://doi.org/10.1105/tpc.19.00869</a>","ista":"Zhang X, Adamowski M, Marhavá P, Tan S, Zhang Y, Rodriguez Solovey L, Zwiewka M, Pukyšová V, Sánchez AS, Raxwal VK, Hardtke CS, Nodzynski T, Friml J. 2020. Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. The Plant Cell. 32(5), 1644–1664.","ama":"Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. <i>The Plant Cell</i>. 2020;32(5):1644-1664. doi:<a href=\"https://doi.org/10.1105/tpc.19.00869\">10.1105/tpc.19.00869</a>","mla":"Zhang, Xixi, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” <i>The Plant Cell</i>, vol. 32, no. 5, American Society of Plant Biologists, 2020, pp. 1644–64, doi:<a href=\"https://doi.org/10.1105/tpc.19.00869\">10.1105/tpc.19.00869</a>.","ieee":"X. Zhang <i>et al.</i>, “Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters,” <i>The Plant Cell</i>, vol. 32, no. 5. American Society of Plant Biologists, pp. 1644–1664, 2020."},"project":[{"name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985","call_identifier":"H2020","_id":"261099A6-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","_id":"26538374-B435-11E9-9278-68D0E5697425","name":"Molecular mechanisms of endocytic cargo recognition in plants","grant_number":"I03630"}],"volume":32,"scopus_import":"1","department":[{"_id":"JiFr"}]},{"scopus_import":"1","department":[{"_id":"FyKo"}],"volume":41,"doi":"10.1088/1361-6404/ab6414","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"short":"M. Plesch, S. Plesník, N. Ruzickova, European Journal of Physics 41 (2020).","chicago":"Plesch, Martin, Samuel Plesník, and Natalia Ruzickova. “The IYPT and the ‘Ring Oiler’ Problem.” <i>European Journal of Physics</i>. IOP Publishing, 2020. <a href=\"https://doi.org/10.1088/1361-6404/ab6414\">https://doi.org/10.1088/1361-6404/ab6414</a>.","apa":"Plesch, M., Plesník, S., &#38; Ruzickova, N. (2020). The IYPT and the “Ring Oiler” problem. <i>European Journal of Physics</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1361-6404/ab6414\">https://doi.org/10.1088/1361-6404/ab6414</a>","ama":"Plesch M, Plesník S, Ruzickova N. The IYPT and the “Ring Oiler” problem. <i>European Journal of Physics</i>. 2020;41(3). doi:<a href=\"https://doi.org/10.1088/1361-6404/ab6414\">10.1088/1361-6404/ab6414</a>","ista":"Plesch M, Plesník S, Ruzickova N. 2020. The IYPT and the ‘Ring Oiler’ problem. European Journal of Physics. 41(3), 034001.","ieee":"M. Plesch, S. Plesník, and N. Ruzickova, “The IYPT and the ‘Ring Oiler’ problem,” <i>European Journal of Physics</i>, vol. 41, no. 3. IOP Publishing, 2020.","mla":"Plesch, Martin, et al. “The IYPT and the ‘Ring Oiler’ Problem.” <i>European Journal of Physics</i>, vol. 41, no. 3, 034001, IOP Publishing, 2020, doi:<a href=\"https://doi.org/10.1088/1361-6404/ab6414\">10.1088/1361-6404/ab6414</a>."},"_id":"7622","oa_version":"Published Version","quality_controlled":"1","article_type":"original","file_date_updated":"2020-07-14T12:48:01Z","publication_identifier":{"issn":["0143-0807"],"eissn":["1361-6404"]},"day":"24","arxiv":1,"external_id":{"arxiv":["1910.03290"],"isi":["000537425400001"]},"author":[{"full_name":"Plesch, Martin","last_name":"Plesch","first_name":"Martin"},{"last_name":"Plesník","first_name":"Samuel","full_name":"Plesník, Samuel"},{"first_name":"Natalia","last_name":"Ruzickova","full_name":"Ruzickova, Natalia","id":"D2761128-D73D-11E9-A1BF-BA0DE6697425"}],"date_updated":"2026-04-02T14:22:29Z","title":"The IYPT and the 'Ring Oiler' problem","date_created":"2020-03-31T11:25:04Z","abstract":[{"text":"The International Young Physicists' Tournament (IYPT) continued in 2018 in Beijing, China and 2019 in Warsaw, Poland with its 31st and 32nd editions. The IYPT is a modern scientific competition for teams of high school students, also known as the Physics World Cup. It involves long-term theoretical and experimental work focused on solving 17 publicly announced open-ended problems in teams of five. On top of that, teams have to present their solutions in front of other teams and a scientific jury, and get opposed and reviewed by their peers. Here we present a brief information about the competition with a specific focus on one of the IYPT 2018 tasks, the 'Ring Oiler'. This seemingly simple mechanical problem appeared to be of such a complexity that even the dozens of participating teams and jurying scientists were not able to solve all of its subtleties.","lang":"eng"}],"has_accepted_license":"1","publisher":"IOP Publishing","language":[{"iso":"eng"}],"intvolume":"        41","issue":"3","ddc":["530"],"publication":"European Journal of Physics","status":"public","month":"02","isi":1,"type":"journal_article","oa":1,"article_processing_charge":"No","year":"2020","publication_status":"published","file":[{"file_id":"7641","date_updated":"2020-07-14T12:48:01Z","date_created":"2020-04-06T08:53:53Z","relation":"main_file","creator":"dernst","checksum":"47dda164e33b6c0c6c3ed14aad298376","file_name":"2020_EuropJourPhysics_Plesch.pdf","file_size":1533672,"access_level":"open_access","content_type":"application/pdf"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","article_number":"034001","date_published":"2020-02-24T00:00:00Z"},{"publication_status":"published","year":"2020","article_processing_charge":"No","date_published":"2020-03-18T00:00:00Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","page":"513-537","oa":1,"type":"journal_article","isi":1,"issue":"3","month":"03","publication":"Mathematical Models and Methods in Applied Sciences","status":"public","publisher":"World Scientific Publishing","date_created":"2020-03-31T11:25:05Z","abstract":[{"lang":"eng","text":"A two-dimensional mathematical model for cells migrating without adhesion capabilities is presented and analyzed. Cells are represented by their cortex, which is modeled as an elastic curve, subject to an internal pressure force. Net polymerization or depolymerization in the cortex is modeled via local addition or removal of material, driving a cortical flow. The model takes the form of a fully nonlinear degenerate parabolic system. An existence analysis is carried out by adapting ideas from the theory of gradient flows. Numerical simulations show that these simple rules can account for the behavior observed in experiments, suggesting a possible mechanical mechanism for adhesion-independent motility."}],"intvolume":"        30","language":[{"iso":"eng"}],"author":[{"first_name":"Gaspard","last_name":"Jankowiak","full_name":"Jankowiak, Gaspard"},{"full_name":"Peurichard, Diane","last_name":"Peurichard","first_name":"Diane"},{"full_name":"Reversat, Anne","id":"35B76592-F248-11E8-B48F-1D18A9856A87","first_name":"Anne","last_name":"Reversat","orcid":"0000-0003-0666-8928"},{"first_name":"Christian","last_name":"Schmeiser","full_name":"Schmeiser, Christian"},{"full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K","last_name":"Sixt","orcid":"0000-0002-6620-9179"}],"title":"Modeling adhesion-independent cell migration","date_updated":"2026-04-16T09:35:31Z","arxiv":1,"day":"18","publication_identifier":{"issn":["0218-2025"]},"article_type":"original","acknowledgement":"This work has been supported by the Vienna Science and Technology Fund, Grant no. LS13-029. G.J. and C.S. also acknowledge support by the Austrian Science Fund, Grants no. W1245, F 65, and W1261, as well as by the Fondation Sciences Mathématiques de Paris, and by Paris-Sciences-et-Lettres.","external_id":{"arxiv":["1903.09426"],"isi":["000525349900003"]},"oa_version":"Preprint","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1903.09426"}],"_id":"7623","volume":30,"department":[{"_id":"MiSi"}],"scopus_import":"1","citation":{"mla":"Jankowiak, Gaspard, et al. “Modeling Adhesion-Independent Cell Migration.” <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 30, no. 3, World Scientific Publishing, 2020, pp. 513–37, doi:<a href=\"https://doi.org/10.1142/S021820252050013X\">10.1142/S021820252050013X</a>.","ieee":"G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, and M. K. Sixt, “Modeling adhesion-independent cell migration,” <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 30, no. 3. World Scientific Publishing, pp. 513–537, 2020.","ista":"Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. 2020. Modeling adhesion-independent cell migration. Mathematical Models and Methods in Applied Sciences. 30(3), 513–537.","ama":"Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. Modeling adhesion-independent cell migration. <i>Mathematical Models and Methods in Applied Sciences</i>. 2020;30(3):513-537. doi:<a href=\"https://doi.org/10.1142/S021820252050013X\">10.1142/S021820252050013X</a>","apa":"Jankowiak, G., Peurichard, D., Reversat, A., Schmeiser, C., &#38; Sixt, M. K. (2020). Modeling adhesion-independent cell migration. <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S021820252050013X\">https://doi.org/10.1142/S021820252050013X</a>","chicago":"Jankowiak, Gaspard, Diane Peurichard, Anne Reversat, Christian Schmeiser, and Michael K Sixt. “Modeling Adhesion-Independent Cell Migration.” <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing, 2020. <a href=\"https://doi.org/10.1142/S021820252050013X\">https://doi.org/10.1142/S021820252050013X</a>.","short":"G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, M.K. Sixt, Mathematical Models and Methods in Applied Sciences 30 (2020) 513–537."},"doi":"10.1142/S021820252050013X","project":[{"name":"Modeling of Polarization and Motility of Leukocytes in Three-Dimensional Environments","grant_number":"LS13-029","_id":"25AD6156-B435-11E9-9278-68D0E5697425"}]},{"department":[{"_id":"JaMa"}],"citation":{"ista":"Forkert DL. 2020. Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains. Institute of Science and Technology Austria.","apa":"Forkert, D. L. (2020). <i>Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:7629\">https://doi.org/10.15479/AT:ISTA:7629</a>","ama":"Forkert DL. Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains. 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7629\">10.15479/AT:ISTA:7629</a>","mla":"Forkert, Dominik L. <i>Gradient Flows in Spaces of Probability Measures for Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains</i>. Institute of Science and Technology Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7629\">10.15479/AT:ISTA:7629</a>.","ieee":"D. L. Forkert, “Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains,” Institute of Science and Technology Austria, 2020.","short":"D.L. Forkert, Gradient Flows in Spaces of Probability Measures for Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains, Institute of Science and Technology Austria, 2020.","chicago":"Forkert, Dominik L. “Gradient Flows in Spaces of Probability Measures for Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains.” Institute of Science and Technology Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:7629\">https://doi.org/10.15479/AT:ISTA:7629</a>."},"doi":"10.15479/AT:ISTA:7629","project":[{"name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117","call_identifier":"H2020","_id":"256E75B8-B435-11E9-9278-68D0E5697425"}],"oa_version":"Published Version","_id":"7629","day":"31","publication_identifier":{"issn":["2663-337X"]},"file_date_updated":"2020-07-14T12:48:01Z","OA_place":"publisher","author":[{"id":"35C79D68-F248-11E8-B48F-1D18A9856A87","full_name":"Forkert, Dominik L","last_name":"Forkert","first_name":"Dominik L"}],"title":"Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains","date_updated":"2026-04-08T07:22:00Z","publisher":"Institute of Science and Technology Austria","date_created":"2020-04-02T06:40:23Z","has_accepted_license":"1","abstract":[{"text":"This thesis is based on three main topics: In the first part, we study convergence of discrete gradient flow structures associated with regular finite-volume discretisations of Fokker-Planck equations. We show evolutionary I convergence of the discrete gradient flows to the L2-Wasserstein gradient flow corresponding to the solution of a Fokker-Planck\r\nequation in arbitrary dimension d >= 1. Along the argument, we prove Mosco- and I-convergence results for discrete energy functionals, which are of independent interest for convergence of equivalent gradient flow structures in Hilbert spaces.\r\nThe second part investigates L2-Wasserstein flows on metric graph. The starting point is a Benamou-Brenier formula for the L2-Wasserstein distance, which is proved via a regularisation scheme for solutions of the continuity equation, adapted to the peculiar geometric structure of metric graphs. Based on those results, we show that the L2-Wasserstein space over a metric graph admits a gradient flow which may be identified as a solution of a Fokker-Planck equation.\r\nIn the third part, we focus again on the discrete gradient flows, already encountered in the first part. We propose a variational structure which extends the gradient flow structure to Markov chains violating the detailed-balance conditions. Using this structure, we characterise contraction estimates for the discrete heat flow in terms of convexity of\r\ncorresponding path-dependent energy functionals. In addition, we use this approach to derive several functional inequalities for said functionals.","lang":"eng"}],"alternative_title":["ISTA Thesis"],"language":[{"iso":"eng"}],"supervisor":[{"first_name":"Jan","last_name":"Maas","orcid":"0000-0002-0845-1338","full_name":"Maas, Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87"}],"degree_awarded":"PhD","month":"03","ddc":["510"],"corr_author":"1","status":"public","page":"154","oa":1,"ec_funded":1,"type":"dissertation","file":[{"file_size":3297129,"access_level":"open_access","content_type":"application/pdf","date_created":"2020-04-14T10:47:59Z","relation":"main_file","checksum":"c814a1a6195269ca6fe48b0dca45ae8a","creator":"dernst","file_name":"Thesis_Forkert_PDFA.pdf","date_updated":"2020-07-14T12:48:01Z","file_id":"7657"},{"access_level":"closed","content_type":"application/x-zip-compressed","file_size":1063908,"checksum":"ceafb53f923d1b5bdf14b2b0f22e4a81","file_name":"Thesis_Forkert_source.zip","creator":"dernst","date_created":"2020-04-14T10:47:59Z","relation":"source_file","date_updated":"2020-07-14T12:48:01Z","file_id":"7658"}],"publication_status":"published","article_processing_charge":"No","year":"2020","date_published":"2020-03-31T00:00:00Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd"},{"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","article_number":"5559","date_published":"2020-03-27T00:00:00Z","year":"2020","article_processing_charge":"No","publication_status":"published","file":[{"file_name":"2020_ScientificReports_Tombaz.pdf","creator":"dernst","checksum":"e6cfaaaf7986532132934400038b824a","relation":"main_file","date_created":"2020-04-06T10:44:23Z","content_type":"application/pdf","access_level":"open_access","file_size":2621249,"file_id":"7644","date_updated":"2020-07-14T12:48:01Z"}],"type":"journal_article","isi":1,"oa":1,"month":"03","ddc":["570"],"status":"public","publication":"Scientific reports","issue":"1","language":[{"iso":"eng"}],"intvolume":"        10","abstract":[{"text":"The posterior parietal cortex (PPC) and frontal motor areas comprise a cortical network supporting goal-directed behaviour, with functions including sensorimotor transformations and decision making. In primates, this network links performed and observed actions via mirror neurons, which fire both when individuals perform an action and when they observe the same action performed by a conspecific. Mirror neurons are believed to be important for social learning, but it is not known whether mirror-like neurons occur in similar networks in other social species, such as rodents, or if they can be measured in such models using paradigms where observers passively view a demonstrator. Therefore, we imaged Ca2+ responses in PPC and secondary motor cortex (M2) while mice performed and observed pellet-reaching and wheel-running tasks, and found that cell populations in both areas robustly encoded several naturalistic behaviours. However, neural responses to the same set of observed actions were absent, although we verified that observer mice were attentive to performers and that PPC neurons responded reliably to visual cues. Statistical modelling also indicated that executed actions outperformed observed actions in predicting neural responses. These results raise the possibility that sensorimotor action recognition in rodents could take place outside of the parieto-frontal circuit, and underscore that detecting socially-driven neural coding depends critically on the species and behavioural paradigm used.","lang":"eng"}],"has_accepted_license":"1","date_created":"2020-04-05T22:00:47Z","publisher":"Springer Nature","date_updated":"2026-04-02T14:23:52Z","title":"Action representation in the mouse parieto-frontal network","author":[{"full_name":"Tombaz, Tuce","first_name":"Tuce","last_name":"Tombaz"},{"full_name":"Dunn, Benjamin A.","first_name":"Benjamin A.","last_name":"Dunn"},{"first_name":"Karoline","last_name":"Hovde","full_name":"Hovde, Karoline"},{"first_name":"Ryan J","orcid":"0000-0003-0002-1867","last_name":"Cubero","id":"850B2E12-9CD4-11E9-837F-E719E6697425","full_name":"Cubero, Ryan J"},{"last_name":"Mimica","first_name":"Bartul","full_name":"Mimica, Bartul"},{"full_name":"Mamidanna, Pranav","first_name":"Pranav","last_name":"Mamidanna"},{"full_name":"Roudi, Yasser","first_name":"Yasser","last_name":"Roudi"},{"last_name":"Whitlock","first_name":"Jonathan R.","full_name":"Whitlock, Jonathan R."}],"external_id":{"isi":["000560406800007"]},"article_type":"original","publication_identifier":{"eissn":["2045-2322"]},"file_date_updated":"2020-07-14T12:48:01Z","day":"27","_id":"7632","quality_controlled":"1","oa_version":"Published Version","citation":{"ieee":"T. Tombaz <i>et al.</i>, “Action representation in the mouse parieto-frontal network,” <i>Scientific reports</i>, vol. 10, no. 1. Springer Nature, 2020.","mla":"Tombaz, Tuce, et al. “Action Representation in the Mouse Parieto-Frontal Network.” <i>Scientific Reports</i>, vol. 10, no. 1, 5559, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s41598-020-62089-6\">10.1038/s41598-020-62089-6</a>.","ista":"Tombaz T, Dunn BA, Hovde K, Cubero RJ, Mimica B, Mamidanna P, Roudi Y, Whitlock JR. 2020. Action representation in the mouse parieto-frontal network. Scientific reports. 10(1), 5559.","apa":"Tombaz, T., Dunn, B. A., Hovde, K., Cubero, R. J., Mimica, B., Mamidanna, P., … Whitlock, J. R. (2020). Action representation in the mouse parieto-frontal network. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-020-62089-6\">https://doi.org/10.1038/s41598-020-62089-6</a>","ama":"Tombaz T, Dunn BA, Hovde K, et al. Action representation in the mouse parieto-frontal network. <i>Scientific reports</i>. 2020;10(1). doi:<a href=\"https://doi.org/10.1038/s41598-020-62089-6\">10.1038/s41598-020-62089-6</a>","chicago":"Tombaz, Tuce, Benjamin A. Dunn, Karoline Hovde, Ryan J Cubero, Bartul Mimica, Pranav Mamidanna, Yasser Roudi, and Jonathan R. Whitlock. “Action Representation in the Mouse Parieto-Frontal Network.” <i>Scientific Reports</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41598-020-62089-6\">https://doi.org/10.1038/s41598-020-62089-6</a>.","short":"T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y. Roudi, J.R. Whitlock, Scientific Reports 10 (2020)."},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1038/s41598-020-62089-6","scopus_import":"1","department":[{"_id":"SaSi"}],"volume":10},{"publication_identifier":{"isbn":["9781450368186"]},"day":"19","conference":{"end_date":"2020-02-26","location":"San Diego, CA, United States","name":"PPOPP: Principles and Practice of Parallel Programming","start_date":"2020-02-22"},"OA_place":"publisher","author":[{"last_name":"Koval","first_name":"Nikita","id":"2F4DB10C-F248-11E8-B48F-1D18A9856A87","full_name":"Koval, Nikita"},{"first_name":"Mariia","last_name":"Sokolova","full_name":"Sokolova, Mariia","id":"26217AE4-77FF-11EA-8101-AD24D49E41F4"},{"first_name":"Alexander","last_name":"Fedorov","full_name":"Fedorov, Alexander"},{"full_name":"Alistarh, Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","first_name":"Dan-Adrian","last_name":"Alistarh","orcid":"0000-0003-3650-940X"},{"full_name":"Tsitelov, Dmitry","first_name":"Dmitry","last_name":"Tsitelov"}],"date_updated":"2026-06-18T19:24:47Z","title":"Testing concurrency on the JVM with Lincheck","scopus_import":"1","department":[{"_id":"DaAl"}],"citation":{"chicago":"Koval, Nikita, Mariia Sokolova, Alexander Fedorov, Dan-Adrian Alistarh, and Dmitry Tsitelov. “Testing Concurrency on the JVM with Lincheck.” In <i>Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>, 423–24. Association for Computing Machinery, 2020. <a href=\"https://doi.org/10.1145/3332466.3374503\">https://doi.org/10.1145/3332466.3374503</a>.","short":"N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2020, pp. 423–424.","mla":"Koval, Nikita, et al. “Testing Concurrency on the JVM with Lincheck.” <i>Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>, Association for Computing Machinery, 2020, pp. 423–24, doi:<a href=\"https://doi.org/10.1145/3332466.3374503\">10.1145/3332466.3374503</a>.","ieee":"N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, and D. Tsitelov, “Testing concurrency on the JVM with Lincheck,” in <i>Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>, San Diego, CA, United States, 2020, pp. 423–424.","ama":"Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. Testing concurrency on the JVM with Lincheck. In: <i>Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>. Association for Computing Machinery; 2020:423-424. doi:<a href=\"https://doi.org/10.1145/3332466.3374503\">10.1145/3332466.3374503</a>","ista":"Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. 2020. Testing concurrency on the JVM with Lincheck. Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming. PPOPP: Principles and Practice of Parallel Programming, 423–424.","apa":"Koval, N., Sokolova, M., Fedorov, A., Alistarh, D.-A., &#38; Tsitelov, D. (2020). Testing concurrency on the JVM with Lincheck. In <i>Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i> (pp. 423–424). San Diego, CA, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3332466.3374503\">https://doi.org/10.1145/3332466.3374503</a>"},"doi":"10.1145/3332466.3374503","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1145/3332466.3374503"}],"quality_controlled":"1","oa_version":"Published Version","_id":"7635","page":"423-424","oa":1,"type":"conference","article_processing_charge":"No","year":"2020","publication_status":"published","date_published":"2020-02-19T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Association for Computing Machinery","date_created":"2020-04-05T22:00:48Z","abstract":[{"text":"Concurrent programming can be notoriously complex and error-prone. Programming bugs can arise from a variety of sources, such as operation re-reordering, or incomplete understanding of the memory model. A variety of formal and model checking methods have been developed to address this fundamental difficulty. While technically interesting, existing academic methods are still hard to apply to the large codebases typical of industrial deployments, which limits their practical impact.","lang":"eng"}],"OA_type":"free access","language":[{"iso":"eng"}],"publication":"Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming","month":"02","ddc":["000"],"status":"public"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1811.06448"}],"quality_controlled":"1","oa_version":"Preprint","_id":"7637","volume":33,"department":[{"_id":"JuFi"}],"scopus_import":"1","citation":{"chicago":"Cornalba, Federico, Tony Shardlow, and Johannes Zimmer. “From Weakly Interacting Particles to a Regularised Dean-Kawasaki Model.” <i>Nonlinearity</i>. IOP Publishing, 2020. <a href=\"https://doi.org/10.1088/1361-6544/ab5174\">https://doi.org/10.1088/1361-6544/ab5174</a>.","short":"F. Cornalba, T. Shardlow, J. Zimmer, Nonlinearity 33 (2020) 864–891.","mla":"Cornalba, Federico, et al. “From Weakly Interacting Particles to a Regularised Dean-Kawasaki Model.” <i>Nonlinearity</i>, vol. 33, no. 2, IOP Publishing, 2020, pp. 864–91, doi:<a href=\"https://doi.org/10.1088/1361-6544/ab5174\">10.1088/1361-6544/ab5174</a>.","ieee":"F. Cornalba, T. Shardlow, and J. Zimmer, “From weakly interacting particles to a regularised Dean-Kawasaki model,” <i>Nonlinearity</i>, vol. 33, no. 2. IOP Publishing, pp. 864–891, 2020.","ista":"Cornalba F, Shardlow T, Zimmer J. 2020. From weakly interacting particles to a regularised Dean-Kawasaki model. Nonlinearity. 33(2), 864–891.","ama":"Cornalba F, Shardlow T, Zimmer J. From weakly interacting particles to a regularised Dean-Kawasaki model. <i>Nonlinearity</i>. 2020;33(2):864-891. doi:<a href=\"https://doi.org/10.1088/1361-6544/ab5174\">10.1088/1361-6544/ab5174</a>","apa":"Cornalba, F., Shardlow, T., &#38; Zimmer, J. (2020). From weakly interacting particles to a regularised Dean-Kawasaki model. <i>Nonlinearity</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1361-6544/ab5174\">https://doi.org/10.1088/1361-6544/ab5174</a>"},"doi":"10.1088/1361-6544/ab5174","author":[{"full_name":"Cornalba, Federico","id":"2CEB641C-A400-11E9-A717-D712E6697425","first_name":"Federico","last_name":"Cornalba","orcid":"0000-0002-6269-5149"},{"full_name":"Shardlow, Tony","first_name":"Tony","last_name":"Shardlow"},{"first_name":"Johannes","last_name":"Zimmer","full_name":"Zimmer, Johannes"}],"date_updated":"2026-04-02T14:26:08Z","title":"From weakly interacting particles to a regularised Dean-Kawasaki model","arxiv":1,"article_type":"original","publication_identifier":{"eissn":["1361-6544"],"issn":["0951-7715"]},"day":"10","external_id":{"isi":["000508175400001"],"arxiv":["1811.06448"]},"issue":"2","status":"public","publication":"Nonlinearity","month":"01","publisher":"IOP Publishing","date_created":"2020-04-05T22:00:49Z","abstract":[{"lang":"eng","text":"The evolution of finitely many particles obeying Langevin dynamics is described by Dean–Kawasaki equations, a class of stochastic equations featuring a non-Lipschitz multiplicative noise in divergence form. We derive a regularised Dean–Kawasaki model based on second order Langevin dynamics by analysing a system of particles interacting via a pairwise potential. Key tools of our analysis are the propagation of chaos and Simon's compactness criterion. The model we obtain is a small-noise stochastic perturbation of the undamped McKean–Vlasov equation. We also provide a high-probability result for existence and uniqueness for our model."}],"intvolume":"        33","language":[{"iso":"eng"}],"article_processing_charge":"No","year":"2020","publication_status":"published","date_published":"2020-01-10T00:00:00Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","page":"864-891","oa":1,"type":"journal_article","isi":1},{"citation":{"ista":"De Nicola S, Doyon B, Bhaseen MJ. 2020. Non-equilibrium quantum spin dynamics from classical stochastic processes. Journal of Statistical Mechanics: Theory and Experiment. 2020(1), 013106.","apa":"De Nicola, S., Doyon, B., &#38; Bhaseen, M. J. (2020). Non-equilibrium quantum spin dynamics from classical stochastic processes. <i>Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1742-5468/ab6093\">https://doi.org/10.1088/1742-5468/ab6093</a>","ama":"De Nicola S, Doyon B, Bhaseen MJ. Non-equilibrium quantum spin dynamics from classical stochastic processes. <i>Journal of Statistical Mechanics: Theory and Experiment</i>. 2020;2020(1). doi:<a href=\"https://doi.org/10.1088/1742-5468/ab6093\">10.1088/1742-5468/ab6093</a>","mla":"De Nicola, Stefano, et al. “Non-Equilibrium Quantum Spin Dynamics from Classical Stochastic Processes.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2020, no. 1, 013106, IOP Publishing, 2020, doi:<a href=\"https://doi.org/10.1088/1742-5468/ab6093\">10.1088/1742-5468/ab6093</a>.","ieee":"S. De Nicola, B. Doyon, and M. J. Bhaseen, “Non-equilibrium quantum spin dynamics from classical stochastic processes,” <i>Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2020, no. 1. IOP Publishing, 2020.","short":"S. De Nicola, B. Doyon, M.J. Bhaseen, Journal of Statistical Mechanics: Theory and Experiment 2020 (2020).","chicago":"De Nicola, Stefano, B. Doyon, and M. J. Bhaseen. “Non-Equilibrium Quantum Spin Dynamics from Classical Stochastic Processes.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing, 2020. <a href=\"https://doi.org/10.1088/1742-5468/ab6093\">https://doi.org/10.1088/1742-5468/ab6093</a>."},"doi":"10.1088/1742-5468/ab6093","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"volume":2020,"department":[{"_id":"MaSe"}],"scopus_import":"1","quality_controlled":"1","oa_version":"Published Version","_id":"7638","external_id":{"arxiv":["1909.13142"],"isi":["000520187500001"]},"arxiv":1,"day":"22","publication_identifier":{"eissn":["1742-5468"]},"file_date_updated":"2020-07-14T12:48:01Z","article_type":"original","title":"Non-equilibrium quantum spin dynamics from classical stochastic processes","date_updated":"2026-04-02T14:33:33Z","author":[{"last_name":"De Nicola","orcid":"0000-0002-4842-6671","first_name":"Stefano","full_name":"De Nicola, Stefano","id":"42832B76-F248-11E8-B48F-1D18A9856A87"},{"first_name":"B.","last_name":"Doyon","full_name":"Doyon, B."},{"full_name":"Bhaseen, M. J.","first_name":"M. J.","last_name":"Bhaseen"}],"intvolume":"      2020","language":[{"iso":"eng"}],"publisher":"IOP Publishing","has_accepted_license":"1","date_created":"2020-04-05T22:00:50Z","abstract":[{"text":"Following on from our recent work, we investigate a stochastic approach to non-equilibrium quantum spin systems. We show how the method can be applied to a variety of physical observables and for different initial conditions. We provide exact formulae of broad applicability for the time-dependence of expectation values and correlation functions following a quantum quench in terms of averages over classical stochastic processes. We further explore the behavior of the classical stochastic variables in the presence of dynamical quantum phase transitions, including results for their distributions and correlation functions. We provide details on the numerical solution of the associated stochastic differential equations, and examine the growth of fluctuations in the classical description. We discuss the strengths and limitations of the current implementation of the stochastic approach and the potential for further development.","lang":"eng"}],"ddc":["530"],"corr_author":"1","publication":"Journal of Statistical Mechanics: Theory and Experiment","month":"01","status":"public","issue":"1","oa":1,"type":"journal_article","ec_funded":1,"isi":1,"date_published":"2020-01-22T00:00:00Z","article_number":"013106","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","file":[{"file_size":3159026,"access_level":"open_access","content_type":"application/pdf","date_created":"2020-04-06T13:15:49Z","relation":"main_file","checksum":"4030e683c15d30b7b4794ec7dc1b6537","creator":"dernst","file_name":"2020_JournStatisticalMech_DeNicola.pdf","date_updated":"2020-07-14T12:48:01Z","file_id":"7648"}],"publication_status":"published","article_processing_charge":"No","year":"2020"},{"publication_identifier":{"issn":["0022-0957"],"eissn":["1460-2431"]},"file_date_updated":"2020-10-06T07:41:35Z","article_type":"original","day":"06","external_id":{"pmid":["32179893"],"isi":["000553125400007"]},"author":[{"full_name":"Lee, E","first_name":"E","last_name":"Lee"},{"first_name":"B","last_name":"Vila Nova Santana","full_name":"Vila Nova Santana, B"},{"first_name":"E","last_name":"Samuels","full_name":"Samuels, E"},{"full_name":"Benitez-Fuente, F","first_name":"F","last_name":"Benitez-Fuente"},{"last_name":"Corsi","first_name":"E","full_name":"Corsi, E"},{"full_name":"Botella, MA","last_name":"Botella","first_name":"MA"},{"last_name":"Perez-Sancho","first_name":"J","full_name":"Perez-Sancho, J"},{"last_name":"Vanneste","first_name":"S","full_name":"Vanneste, S"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","first_name":"Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml"},{"full_name":"Macho, A","first_name":"A","last_name":"Macho"},{"last_name":"Alves Azevedo","first_name":"A","full_name":"Alves Azevedo, A"},{"last_name":"Rosado","first_name":"A","full_name":"Rosado, A"}],"date_updated":"2024-10-21T06:02:26Z","title":"Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis","volume":71,"department":[{"_id":"JiFr"}],"scopus_import":"1","citation":{"short":"E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M. Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A. Rosado, Journal of Experimental Botany 71 (2020) 3986–3998.","chicago":"Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella, J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2020. <a href=\"https://doi.org/10.1093/jxb/eraa138\">https://doi.org/10.1093/jxb/eraa138</a>.","ista":"Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental Botany. 71(14), 3986–3998.","apa":"Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E., Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/eraa138\">https://doi.org/10.1093/jxb/eraa138</a>","ama":"Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. <i>Journal of Experimental Botany</i>. 2020;71(14):3986–3998. doi:<a href=\"https://doi.org/10.1093/jxb/eraa138\">10.1093/jxb/eraa138</a>","ieee":"E. Lee <i>et al.</i>, “Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,” <i>Journal of Experimental Botany</i>, vol. 71, no. 14. Oxford University Press, pp. 3986–3998, 2020.","mla":"Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal of Experimental Botany</i>, vol. 71, no. 14, Oxford University Press, 2020, pp. 3986–3998, doi:<a href=\"https://doi.org/10.1093/jxb/eraa138\">10.1093/jxb/eraa138</a>."},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1093/jxb/eraa138","oa_version":"Published Version","quality_controlled":"1","_id":"7646","page":"3986–3998","oa":1,"type":"journal_article","isi":1,"file":[{"file_size":1916031,"access_level":"open_access","content_type":"application/pdf","date_created":"2020-10-06T07:41:35Z","relation":"main_file","checksum":"b06aaaa93dc41896da805fe4b75cf3a1","creator":"dernst","file_name":"2020_JourExperimBotany_Lee.pdf","date_updated":"2020-10-06T07:41:35Z","success":1,"file_id":"8613"}],"article_processing_charge":"No","year":"2020","publication_status":"published","date_published":"2020-07-06T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"Oxford University Press","date_created":"2020-04-06T10:57:08Z","pmid":1,"abstract":[{"text":"In plant cells, environmental stressors promote changes in connectivity between the cortical ER and the PM. Although this process is tightly regulated in space and time, the molecular signals and structural components mediating these changes in inter-organelle communication are only starting to be characterized. In this report, we confirm the presence of a putative tethering complex containing the synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein 1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+) rare earth elements (REEs). Although REEs are generally used as non-selective cation channel blockers at the PM, here we show that the slow internalization of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes. We propose that the observed EPCS rearrangements act as a slow adaptive response to sustained stress conditions, and that this process involves the accumulation of stress-specific phosphoinositides species at the PM.","lang":"eng"}],"has_accepted_license":"1","intvolume":"        71","language":[{"iso":"eng"}],"issue":"14","publication":"Journal of Experimental Botany","month":"07","ddc":["580"],"status":"public"},{"status":"public","ddc":["510"],"month":"03","publication":"Archive for Rational Mechanics and Analysis","corr_author":"1","issue":"6","language":[{"iso":"eng"}],"intvolume":"       236","has_accepted_license":"1","date_created":"2020-04-08T15:18:03Z","abstract":[{"text":"We consider a dilute, homogeneous Bose gas at positive temperature. The system is investigated in the Gross–Pitaevskii limit, where the scattering length a is so small that the interaction energy is of the same order of magnitude as the spectral gap of the Laplacian, and for temperatures that are comparable to the critical temperature of the ideal gas. We show that the difference between the specific free energy of the interacting system and the one of the ideal gas is to leading order given by 4πa(2ϱ2−ϱ20). Here ϱ denotes the density of the system and ϱ0 is the expected condensate density of the ideal gas. Additionally, we show that the one-particle density matrix of any approximate minimizer of the Gibbs free energy functional is to leading order given by the one of the ideal gas. This in particular proves Bose–Einstein condensation with critical temperature given by the one of the ideal gas to leading order. One key ingredient of our proof is a novel use of the Gibbs variational principle that goes hand in hand with the c-number substitution.","lang":"eng"}],"publisher":"Springer Nature","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_published":"2020-03-09T00:00:00Z","year":"2020","article_processing_charge":"Yes (via OA deal)","publication_status":"published","file":[{"checksum":"b645fb64bfe95bbc05b3eea374109a9c","creator":"dernst","file_name":"2020_ArchRatMechanicsAnalysis_Deuchert.pdf","relation":"main_file","date_created":"2020-11-20T13:17:42Z","content_type":"application/pdf","access_level":"open_access","file_size":704633,"success":1,"file_id":"8785","date_updated":"2020-11-20T13:17:42Z"}],"ec_funded":1,"type":"journal_article","isi":1,"oa":1,"page":"1217-1271","_id":"7650","oa_version":"Published Version","quality_controlled":"1","project":[{"grant_number":"694227","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1007/s00205-020-01489-4","citation":{"apa":"Deuchert, A., &#38; Seiringer, R. (2020). Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00205-020-01489-4\">https://doi.org/10.1007/s00205-020-01489-4</a>","ista":"Deuchert A, Seiringer R. 2020. Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. Archive for Rational Mechanics and Analysis. 236(6), 1217–1271.","ama":"Deuchert A, Seiringer R. Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. <i>Archive for Rational Mechanics and Analysis</i>. 2020;236(6):1217-1271. doi:<a href=\"https://doi.org/10.1007/s00205-020-01489-4\">10.1007/s00205-020-01489-4</a>","ieee":"A. Deuchert and R. Seiringer, “Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 236, no. 6. Springer Nature, pp. 1217–1271, 2020.","mla":"Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>, vol. 236, no. 6, Springer Nature, 2020, pp. 1217–71, doi:<a href=\"https://doi.org/10.1007/s00205-020-01489-4\">10.1007/s00205-020-01489-4</a>.","short":"A. Deuchert, R. Seiringer, Archive for Rational Mechanics and Analysis 236 (2020) 1217–1271.","chicago":"Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s00205-020-01489-4\">https://doi.org/10.1007/s00205-020-01489-4</a>."},"department":[{"_id":"RoSe"}],"scopus_import":"1","volume":236,"date_updated":"2025-04-14T07:27:00Z","title":"Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature","author":[{"full_name":"Deuchert, Andreas","id":"4DA65CD0-F248-11E8-B48F-1D18A9856A87","last_name":"Deuchert","orcid":"0000-0003-3146-6746","first_name":"Andreas"},{"first_name":"Robert","orcid":"0000-0002-6781-0521","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert"}],"external_id":{"isi":["000519415000001"],"arxiv":["1901.11363"]},"file_date_updated":"2020-11-20T13:17:42Z","publication_identifier":{"eissn":["1432-0673"],"issn":["0003-9527"]},"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). It is a pleasure to thank Jakob Yngvason for helpful discussions. Financial support by the European Research Council (ERC) under the European Union’sHorizon 2020 research and innovation programme (Grant Agreement No. 694227) is gratefully acknowledged. A. D. acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 836146.","article_type":"original","day":"09","arxiv":1},{"oa":1,"type":"journal_article","isi":1,"article_number":"20","date_published":"2020-03-13T00:00:00Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","file":[{"content_type":"application/pdf","access_level":"open_access","file_size":4082937,"checksum":"2b1da23823eae9cedbb42d701945b61e","file_name":"2020_Frontiers_Berry.pdf","creator":"dernst","relation":"main_file","date_created":"2020-04-14T12:20:39Z","date_updated":"2020-07-14T12:48:01Z","file_id":"7659"}],"year":"2020","article_processing_charge":"No","publication_status":"published","intvolume":"        14","language":[{"iso":"eng"}],"publisher":"Frontiers","abstract":[{"lang":"eng","text":"We propose that correlations among neurons are generically strong enough to organize neural activity patterns into a discrete set of clusters, which can each be viewed as a population codeword. Our reasoning starts with the analysis of retinal ganglion cell data using maximum entropy models, showing that the population is robustly in a frustrated, marginally sub-critical, or glassy, state. This leads to an argument that neural populations in many other brain areas might share this structure. Next, we use latent variable models to show that this glassy state possesses well-defined clusters of neural activity. Clusters have three appealing properties: (i) clusters exhibit error correction, i.e., they are reproducibly elicited by the same stimulus despite variability at the level of constituent neurons; (ii) clusters encode qualitatively different visual features than their constituent neurons; and (iii) clusters can be learned by downstream neural circuits in an unsupervised fashion. We hypothesize that these properties give rise to a “learnable” neural code which the cortical hierarchy uses to extract increasingly complex features without supervision or reinforcement."}],"date_created":"2020-04-12T22:00:40Z","has_accepted_license":"1","pmid":1,"status":"public","publication":"Frontiers in Computational Neuroscience","ddc":["570"],"month":"03","external_id":{"isi":["000525543200001"],"pmid":["32231528"]},"file_date_updated":"2020-07-14T12:48:01Z","publication_identifier":{"eissn":["1662-5188"]},"article_type":"original","day":"13","date_updated":"2026-04-16T08:28:50Z","title":"Clustering of neural activity: A design principle for population codes","author":[{"full_name":"Berry, Michael J.","first_name":"Michael J.","last_name":"Berry"},{"full_name":"Tkačik, Gašper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gašper","last_name":"Tkačik","orcid":"0000-0002-6699-1455"}],"citation":{"ieee":"M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle for population codes,” <i>Frontiers in Computational Neuroscience</i>, vol. 14. Frontiers, 2020.","mla":"Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>, vol. 14, 20, Frontiers, 2020, doi:<a href=\"https://doi.org/10.3389/fncom.2020.00020\">10.3389/fncom.2020.00020</a>.","ama":"Berry MJ, Tkačik G. Clustering of neural activity: A design principle for population codes. <i>Frontiers in Computational Neuroscience</i>. 2020;14. doi:<a href=\"https://doi.org/10.3389/fncom.2020.00020\">10.3389/fncom.2020.00020</a>","apa":"Berry, M. J., &#38; Tkačik, G. (2020). Clustering of neural activity: A design principle for population codes. <i>Frontiers in Computational Neuroscience</i>. Frontiers. <a href=\"https://doi.org/10.3389/fncom.2020.00020\">https://doi.org/10.3389/fncom.2020.00020</a>","ista":"Berry MJ, Tkačik G. 2020. Clustering of neural activity: A design principle for population codes. Frontiers in Computational Neuroscience. 14, 20.","chicago":"Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>. Frontiers, 2020. <a href=\"https://doi.org/10.3389/fncom.2020.00020\">https://doi.org/10.3389/fncom.2020.00020</a>.","short":"M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020)."},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.3389/fncom.2020.00020","volume":14,"department":[{"_id":"GaTk"}],"scopus_import":"1","quality_controlled":"1","oa_version":"Published Version","_id":"7656"},{"author":[{"last_name":"Felhofer","first_name":"Martin","full_name":"Felhofer, Martin"},{"full_name":"Bock, Peter","first_name":"Peter","last_name":"Bock"},{"full_name":"Singh, Adya","last_name":"Singh","first_name":"Adya"},{"full_name":"Prats Mateu, Batirtze","id":"299FE892-F248-11E8-B48F-1D18A9856A87","last_name":"Prats Mateu","first_name":"Batirtze"},{"first_name":"Ronald","last_name":"Zirbs","full_name":"Zirbs, Ronald"},{"first_name":"Notburga","last_name":"Gierlinger","full_name":"Gierlinger, Notburga"}],"date_updated":"2026-04-02T14:26:44Z","title":"Wood deformation leads to rearrangement of molecules at the nanoscale","publication_identifier":{"eissn":["1530-6992"]},"article_type":"original","file_date_updated":"2020-07-14T12:48:01Z","day":"08","external_id":{"pmid":["32196350"],"isi":["000526413400055"]},"_id":"7663","quality_controlled":"1","oa_version":"Published Version","department":[{"_id":"MaLo"}],"scopus_import":"1","volume":20,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1021/acs.nanolett.0c00205","citation":{"ista":"Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. 2020. Wood deformation leads to rearrangement of molecules at the nanoscale. Nano Letters. 20(4), 2647–2653.","apa":"Felhofer, M., Bock, P., Singh, A., Prats Mateu, B., Zirbs, R., &#38; Gierlinger, N. (2020). Wood deformation leads to rearrangement of molecules at the nanoscale. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.0c00205\">https://doi.org/10.1021/acs.nanolett.0c00205</a>","ama":"Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. Wood deformation leads to rearrangement of molecules at the nanoscale. <i>Nano Letters</i>. 2020;20(4):2647-2653. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.0c00205\">10.1021/acs.nanolett.0c00205</a>","ieee":"M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, and N. Gierlinger, “Wood deformation leads to rearrangement of molecules at the nanoscale,” <i>Nano Letters</i>, vol. 20, no. 4. American Chemical Society, pp. 2647–2653, 2020.","mla":"Felhofer, Martin, et al. “Wood Deformation Leads to Rearrangement of Molecules at the Nanoscale.” <i>Nano Letters</i>, vol. 20, no. 4, American Chemical Society, 2020, pp. 2647–53, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.0c00205\">10.1021/acs.nanolett.0c00205</a>.","short":"M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, N. Gierlinger, Nano Letters 20 (2020) 2647–2653.","chicago":"Felhofer, Martin, Peter Bock, Adya Singh, Batirtze Prats Mateu, Ronald Zirbs, and Notburga Gierlinger. “Wood Deformation Leads to Rearrangement of Molecules at the Nanoscale.” <i>Nano Letters</i>. American Chemical Society, 2020. <a href=\"https://doi.org/10.1021/acs.nanolett.0c00205\">https://doi.org/10.1021/acs.nanolett.0c00205</a>."},"article_processing_charge":"No","year":"2020","publication_status":"published","file":[{"file_id":"7667","date_updated":"2020-07-14T12:48:01Z","date_created":"2020-04-20T10:43:36Z","relation":"main_file","checksum":"fe46146a9c4c620592a1932a8599069e","creator":"dernst","file_name":"2020_NanoLetters_Felhofer.pdf","file_size":7108014,"access_level":"open_access","content_type":"application/pdf"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_published":"2020-04-08T00:00:00Z","page":"2647-2653","type":"journal_article","isi":1,"oa":1,"issue":"4","publication":"Nano Letters","month":"04","status":"public","ddc":["530"],"date_created":"2020-04-19T22:00:54Z","abstract":[{"lang":"eng","text":"Wood, as the most abundant carbon dioxide storing bioresource, is currently driven beyond its traditional use through creative innovations and nanotechnology. For many properties the micro- and nanostructure plays a crucial role and one key challenge is control and detection of chemical and physical processes in the confined microstructure and nanopores of the wooden cell wall. In this study, correlative Raman and atomic force microscopy show high potential for tracking in situ molecular rearrangement of wood polymers during compression. More water molecules (interpreted as wider cellulose microfibril distances) and disentangling of hemicellulose chains are detected in the opened cell wall regions, whereas an increase of lignin is revealed in the compressed areas. These results support a new more “loose” cell wall model based on flexible lignin nanodomains and advance our knowledge of the molecular reorganization during deformation of wood for optimized processing and utilization."}],"pmid":1,"has_accepted_license":"1","publisher":"American Chemical Society","language":[{"iso":"eng"}],"intvolume":"        20"}]