[{"scopus_import":"1","citation":{"ieee":"H. Matsuno, M. Kudoh, A. Watakabe, T. Yamamori, R. Shigemoto, and S. Nagao, “Distribution and structure of synapses on medial vestibular nuclear neurons targeted by cerebellar flocculus purkinje cells and vestibular nerve in mice: Light and electron microscopy studies,” <i>PLoS One</i>, vol. 11, no. 10. Public Library of Science, 2016.","ama":"Matsuno H, Kudoh M, Watakabe A, Yamamori T, Shigemoto R, Nagao S. Distribution and structure of synapses on medial vestibular nuclear neurons targeted by cerebellar flocculus purkinje cells and vestibular nerve in mice: Light and electron microscopy studies. <i>PLoS One</i>. 2016;11(10). doi:<a href=\"https://doi.org/10.1371/journal.pone.0164037\">10.1371/journal.pone.0164037</a>","chicago":"Matsuno, Hitomi, Moeko Kudoh, Akiya Watakabe, Tetsuo Yamamori, Ryuichi Shigemoto, and Soichi Nagao. “Distribution and Structure of Synapses on Medial Vestibular Nuclear Neurons Targeted by Cerebellar Flocculus Purkinje Cells and Vestibular Nerve in Mice: Light and Electron Microscopy Studies.” <i>PLoS One</i>. Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0164037\">https://doi.org/10.1371/journal.pone.0164037</a>.","mla":"Matsuno, Hitomi, et al. “Distribution and Structure of Synapses on Medial Vestibular Nuclear Neurons Targeted by Cerebellar Flocculus Purkinje Cells and Vestibular Nerve in Mice: Light and Electron Microscopy Studies.” <i>PLoS One</i>, vol. 11, no. 10, e0164037, Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0164037\">10.1371/journal.pone.0164037</a>.","short":"H. Matsuno, M. Kudoh, A. Watakabe, T. Yamamori, R. Shigemoto, S. Nagao, PLoS One 11 (2016).","ista":"Matsuno H, Kudoh M, Watakabe A, Yamamori T, Shigemoto R, Nagao S. 2016. Distribution and structure of synapses on medial vestibular nuclear neurons targeted by cerebellar flocculus purkinje cells and vestibular nerve in mice: Light and electron microscopy studies. PLoS One. 11(10), e0164037.","apa":"Matsuno, H., Kudoh, M., Watakabe, A., Yamamori, T., Shigemoto, R., &#38; Nagao, S. (2016). Distribution and structure of synapses on medial vestibular nuclear neurons targeted by cerebellar flocculus purkinje cells and vestibular nerve in mice: Light and electron microscopy studies. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0164037\">https://doi.org/10.1371/journal.pone.0164037</a>"},"has_accepted_license":"1","acknowledgement":"This work was supported by RIKEN [to SN]; Grant-in-Aid from the Japan Society for the Promotion of Science, https://www.jsps.go.jp/english/e-grants/ [22300112 to SN].","file_date_updated":"2020-07-14T12:44:42Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2016-10-06T00:00:00Z","external_id":{"isi":["000385697600069"]},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1371/journal.pone.0164037","license":"https://creativecommons.org/licenses/by/4.0/","article_type":"original","day":"06","issue":"10","author":[{"first_name":"Hitomi","full_name":"Matsuno, Hitomi","last_name":"Matsuno"},{"last_name":"Kudoh","full_name":"Kudoh, Moeko","first_name":"Moeko"},{"last_name":"Watakabe","full_name":"Watakabe, Akiya","first_name":"Akiya"},{"last_name":"Yamamori","full_name":"Yamamori, Tetsuo","first_name":"Tetsuo"},{"first_name":"Ryuichi","orcid":"0000-0001-8761-9444","full_name":"Shigemoto, Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","last_name":"Shigemoto"},{"full_name":"Nagao, Soichi","first_name":"Soichi","last_name":"Nagao"}],"status":"public","isi":1,"month":"10","ddc":["570","571"],"quality_controlled":"1","publication":"PLoS One","file":[{"file_size":3657084,"date_created":"2018-12-12T10:17:16Z","creator":"system","file_id":"5269","content_type":"application/pdf","checksum":"7c0ba0ca6d79844059158059d2a38d25","date_updated":"2020-07-14T12:44:42Z","relation":"main_file","access_level":"open_access","file_name":"IST-2016-689-v1+1_journal.pone.0164037.PDF"}],"date_updated":"2025-09-22T08:37:04Z","intvolume":"        11","article_number":"e0164037","volume":11,"pubrep_id":"689","abstract":[{"lang":"eng","text":"Adaptations of vestibulo-ocular and optokinetic response eye movements have been studied as an experimental model of cerebellum-dependent motor learning. Several previous physiological and pharmacological studies have consistently suggested that the cerebellar flocculus (FL) Purkinje cells (P-cells) and the medial vestibular nucleus (MVN) neurons targeted by FL (FL-targeted MVN neurons) may respectively maintain the memory traces of short- and long-term adaptation. To study the basic structures of the FL-MVN synapses by light microscopy (LM) and electron microscopy (EM), we injected green florescence protein (GFP)-expressing lentivirus into FL to anterogradely label the FL P-cell axons in C57BL/6J mice. The FL P-cell axonal boutons were distributed in the magnocellular MVN and in the border region of parvocellular MVN and prepositus hypoglossi (PrH). In the magnocellular MVN, the FL-P cell axons mainly terminated on somata and proximal dendrites. On the other hand, in the parvocellular MVN/PrH, the FL P-cell axonal synaptic boutons mainly terminated on the relatively small-diameter (&lt; 1 μm) distal dendrites of MVN neurons, forming symmetrical synapses. The majority of such parvocellular MVN/PrH neurons were determined to be glutamatergic by immunocytochemistry and in-situ hybridization of GFP expressing transgenic mice. To further examine the spatial relationship between the synapses of FL P-cells and those of vestibular nerve on the neurons of the parvocellular MVN/ PrH, we added injections of biotinylated dextran amine into the semicircular canal and anterogradely labeled vestibular nerve axons in some mice. The MVN dendrites receiving the FL P-cell axonal synaptic boutons often closely apposed vestibular nerve synaptic boutons in both LM and EM studies. Such a partial overlap of synaptic boutons of FL P-cell axons with those of vestibular nerve axons in the distal dendrites of MVN neurons suggests that inhibitory synapses of FL P-cells may influence the function of neighboring excitatory synapses of vestibular nerve in the parvocellular MVN/PrH neurons."}],"language":[{"iso":"eng"}],"year":"2016","type":"journal_article","publisher":"Public Library of Science","publist_id":"6038","oa":1,"article_processing_charge":"No","publication_status":"published","fulldoi":"https://doi.org/10.1371/journal.pone.0164037","oa_version":"Published Version","date_created":"2018-12-11T11:51:06Z","_id":"1278","title":"Distribution and structure of synapses on medial vestibular nuclear neurons targeted by cerebellar flocculus purkinje cells and vestibular nerve in mice: Light and electron microscopy studies","department":[{"_id":"RySh"}]},{"citation":{"ama":"Kovács K, O’Neill J, Schönenberger P, Penttonen M, Rangel Guerrero DK, Csicsvari JL. Optogenetically blocking sharp wave ripple events in sleep does not interfere with the formation of stable spatial representation in the CA1 area of the hippocampus. <i>PLoS One</i>. 2016;11(10). doi:<a href=\"https://doi.org/10.1371/journal.pone.0164675\">10.1371/journal.pone.0164675</a>","ieee":"K. Kovács, J. O’Neill, P. Schönenberger, M. Penttonen, D. K. Rangel Guerrero, and J. L. Csicsvari, “Optogenetically blocking sharp wave ripple events in sleep does not interfere with the formation of stable spatial representation in the CA1 area of the hippocampus,” <i>PLoS One</i>, vol. 11, no. 10. Public Library of Science, 2016.","short":"K. Kovács, J. O’Neill, P. Schönenberger, M. Penttonen, D.K. Rangel Guerrero, J.L. Csicsvari, PLoS One 11 (2016).","apa":"Kovács, K., O’Neill, J., Schönenberger, P., Penttonen, M., Rangel Guerrero, D. K., &#38; Csicsvari, J. L. (2016). Optogenetically blocking sharp wave ripple events in sleep does not interfere with the formation of stable spatial representation in the CA1 area of the hippocampus. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0164675\">https://doi.org/10.1371/journal.pone.0164675</a>","ista":"Kovács K, O’Neill J, Schönenberger P, Penttonen M, Rangel Guerrero DK, Csicsvari JL. 2016. Optogenetically blocking sharp wave ripple events in sleep does not interfere with the formation of stable spatial representation in the CA1 area of the hippocampus. PLoS One. 11(10), e0164675.","mla":"Kovács, Krisztián, et al. “Optogenetically Blocking Sharp Wave Ripple Events in Sleep Does Not Interfere with the Formation of Stable Spatial Representation in the CA1 Area of the Hippocampus.” <i>PLoS One</i>, vol. 11, no. 10, e0164675, Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0164675\">10.1371/journal.pone.0164675</a>.","chicago":"Kovács, Krisztián, Joseph O’Neill, Philipp Schönenberger, Markku Penttonen, Dámaris K Rangel Guerrero, and Jozsef L Csicsvari. “Optogenetically Blocking Sharp Wave Ripple Events in Sleep Does Not Interfere with the Formation of Stable Spatial Representation in the CA1 Area of the Hippocampus.” <i>PLoS One</i>. Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0164675\">https://doi.org/10.1371/journal.pone.0164675</a>."},"scopus_import":"1","ec_funded":1,"external_id":{"isi":["000386204000043"]},"corr_author":"1","file_date_updated":"2020-07-14T12:44:42Z","acknowledgement":"The research leading to these results has received funding from the People Programme (Marie Curie Actions) of the European Union's Seventh Framework Programme (FP7/2007-2013) under REA grant agreement n° [291734] via the IST FELLOWSHIP awarded to Dr. Krisztián A. Kovács and the European Research Council starting grant (acronym: HIPECMEM Project reference: 281511) awarded to Dr. Jozsef Csicsvari. We thank Lauri Viljanto for technical help in building the ripple detector.","has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2016-10-19T00:00:00Z","day":"19","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1371/journal.pone.0164675","quality_controlled":"1","publication":"PLoS One","issue":"10","author":[{"full_name":"Kovács, Krisztián","id":"2AB5821E-F248-11E8-B48F-1D18A9856A87","first_name":"Krisztián","last_name":"Kovács"},{"full_name":"O'Neill, Joseph","id":"426376DC-F248-11E8-B48F-1D18A9856A87","first_name":"Joseph","last_name":"O'Neill"},{"id":"3B9D816C-F248-11E8-B48F-1D18A9856A87","full_name":"Schönenberger, Philipp","first_name":"Philipp","last_name":"Schönenberger"},{"full_name":"Penttonen, Markku","first_name":"Markku","last_name":"Penttonen"},{"last_name":"Rangel Guerrero","first_name":"Dámaris K","full_name":"Rangel Guerrero, Dámaris K","orcid":"0000-0002-8602-4374","id":"4871BCE6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Csicsvari","first_name":"Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036","full_name":"Csicsvari, Jozsef L"}],"isi":1,"ddc":["570","571"],"month":"10","status":"public","article_number":"e0164675","volume":11,"abstract":[{"lang":"eng","text":"During hippocampal sharp wave/ripple (SWR) events, previously occurring, sensory inputdriven neuronal firing patterns are replayed. Such replay is thought to be important for plasticity- related processes and consolidation of memory traces. It has previously been shown that the electrical stimulation-induced disruption of SWR events interferes with learning in rodents in different experimental paradigms. On the other hand, the cognitive map theory posits that the plastic changes of the firing of hippocampal place cells constitute the electrophysiological counterpart of the spatial learning, observable at the behavioral level. Therefore, we tested whether intact SWR events occurring during the sleep/rest session after the first exploration of a novel environment are needed for the stabilization of the CA1 code, which process requires plasticity. We found that the newly-formed representation in the CA1 has the same level of stability with optogenetic SWR blockade as with a control manipulation that delivered the same amount of light into the brain. Therefore our results suggest that at least in the case of passive exploratory behavior, SWR-related plasticity is dispensable for the stability of CA1 ensembles."}],"pubrep_id":"690","file":[{"file_id":"5009","content_type":"application/pdf","checksum":"395895ecb2216e9c39135abaa56b28b3","creator":"system","relation":"main_file","date_updated":"2020-07-14T12:44:42Z","access_level":"open_access","file_name":"IST-2016-690-v1+1_journal.pone.0164675.PDF","date_created":"2018-12-12T10:13:26Z","file_size":4353592}],"intvolume":"        11","date_updated":"2025-09-22T08:36:27Z","publist_id":"6037","language":[{"iso":"eng"}],"project":[{"grant_number":"291734","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"},{"grant_number":"281511","call_identifier":"FP7","name":"Memory-related information processing in neuronal circuits of the hippocampus and entorhinal cortex","_id":"257A4776-B435-11E9-9278-68D0E5697425"}],"year":"2016","type":"journal_article","publisher":"Public Library of Science","publication_status":"published","fulldoi":"https://doi.org/10.1371/journal.pone.0164675","oa_version":"Published Version","oa":1,"article_processing_charge":"No","_id":"1279","title":"Optogenetically blocking sharp wave ripple events in sleep does not interfere with the formation of stable spatial representation in the CA1 area of the hippocampus","department":[{"_id":"JoCs"}],"date_created":"2018-12-11T11:51:06Z"},{"page":"1815 - 1881","volume":69,"abstract":[{"lang":"eng","text":"We prove the Wigner-Dyson-Mehta conjecture at fixed energy in the bulk of the spectrum for generalized symmetric and Hermitian Wigner matrices. Previous results concerning the universality of random matrices either require an averaging in the energy parameter or they hold only for Hermitian matrices if the energy parameter is fixed. We develop a homogenization theory of the Dyson Brownian motion and show that microscopic universality follows from mesoscopic statistics."}],"arxiv":1,"intvolume":"        69","date_updated":"2025-09-22T08:35:52Z","publist_id":"6036","language":[{"iso":"eng"}],"project":[{"grant_number":"338804","name":"Random matrices, universality and disordered quantum systems","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"year":"2016","type":"journal_article","publisher":"Wiley-Blackwell","publication_status":"published","fulldoi":"https://doi.org/10.1002/cpa.21624","oa_version":"Preprint","oa":1,"article_processing_charge":"No","_id":"1280","title":"Fixed energy universality for generalized wigner matrices","department":[{"_id":"LaEr"}],"date_created":"2018-12-11T11:51:07Z","citation":{"ieee":"P. Bourgade, L. Erdös, H. Yau, and J. Yin, “Fixed energy universality for generalized wigner matrices,” <i>Communications on Pure and Applied Mathematics</i>, vol. 69, no. 10. Wiley-Blackwell, pp. 1815–1881, 2016.","ama":"Bourgade P, Erdös L, Yau H, Yin J. Fixed energy universality for generalized wigner matrices. <i>Communications on Pure and Applied Mathematics</i>. 2016;69(10):1815-1881. doi:<a href=\"https://doi.org/10.1002/cpa.21624\">10.1002/cpa.21624</a>","mla":"Bourgade, Paul, et al. “Fixed Energy Universality for Generalized Wigner Matrices.” <i>Communications on Pure and Applied Mathematics</i>, vol. 69, no. 10, Wiley-Blackwell, 2016, pp. 1815–81, doi:<a href=\"https://doi.org/10.1002/cpa.21624\">10.1002/cpa.21624</a>.","apa":"Bourgade, P., Erdös, L., Yau, H., &#38; Yin, J. (2016). Fixed energy universality for generalized wigner matrices. <i>Communications on Pure and Applied Mathematics</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/cpa.21624\">https://doi.org/10.1002/cpa.21624</a>","short":"P. Bourgade, L. Erdös, H. Yau, J. Yin, Communications on Pure and Applied Mathematics 69 (2016) 1815–1881.","ista":"Bourgade P, Erdös L, Yau H, Yin J. 2016. Fixed energy universality for generalized wigner matrices. Communications on Pure and Applied Mathematics. 69(10), 1815–1881.","chicago":"Bourgade, Paul, László Erdös, Horngtzer Yau, and Jun Yin. “Fixed Energy Universality for Generalized Wigner Matrices.” <i>Communications on Pure and Applied Mathematics</i>. Wiley-Blackwell, 2016. <a href=\"https://doi.org/10.1002/cpa.21624\">https://doi.org/10.1002/cpa.21624</a>."},"scopus_import":"1","ec_funded":1,"external_id":{"arxiv":["1407.5606"],"isi":["000382932900001"]},"corr_author":"1","acknowledgement":"The work of P.B. was partially supported by National Sci-\r\nence Foundation Grant DMS-1208859.  The work of L.E. was partially supported\r\nby ERC Advanced Grant RANMAT 338804.  The work of H.-T. Y. was partially\r\nsupported by National Science Foundation Grant DMS-1307444 and a Simons In-\r\nvestigator award.  The work of J.Y. was partially supported by National Science\r\nFoundation Grant DMS-1207961.  The major part of this research was conducted\r\nwhen all authors were visiting IAS and were also supported by National Science\r\nFoundation Grant DMS-1128255.","date_published":"2016-10-01T00:00:00Z","day":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1002/cpa.21624","publication":"Communications on Pure and Applied Mathematics","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1407.5606"}],"issue":"10","author":[{"last_name":"Bourgade","full_name":"Bourgade, Paul","first_name":"Paul"},{"last_name":"Erdös","full_name":"Erdös, László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László"},{"last_name":"Yau","first_name":"Horngtzer","full_name":"Yau, Horngtzer"},{"last_name":"Yin","full_name":"Yin, Jun","first_name":"Jun"}],"status":"public","month":"10","isi":1},{"doi":"10.1104/pp.16.01047","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"01","issue":"2","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5047109/"}],"author":[{"last_name":"Bouguyon","full_name":"Bouguyon, Eléonore","first_name":"Eléonore"},{"full_name":"Perrine Walker, Francine","first_name":"Francine","last_name":"Perrine Walker"},{"full_name":"Pervent, Marjorie","first_name":"Marjorie","last_name":"Pervent"},{"full_name":"Rochette, Juliette","first_name":"Juliette","last_name":"Rochette"},{"id":"33A3C818-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1923-2410","full_name":"Cuesta, Candela","first_name":"Candela","last_name":"Cuesta"},{"first_name":"Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8510-9739","full_name":"Benková, Eva","last_name":"Benková"},{"last_name":"Martinière","first_name":"Alexandre","full_name":"Martinière, Alexandre"},{"last_name":"Bach","full_name":"Bach, Lien","first_name":"Lien"},{"first_name":"Gabriel","full_name":"Krouk, Gabriel","last_name":"Krouk"},{"last_name":"Gojon","full_name":"Gojon, Alain","first_name":"Alain"},{"last_name":"Nacry","full_name":"Nacry, Philippe","first_name":"Philippe"}],"month":"10","isi":1,"status":"public","quality_controlled":"1","publication":"Plant Physiology","scopus_import":"1","citation":{"ista":"Bouguyon E, Perrine Walker F, Pervent M, Rochette J, Cuesta C, Benková E, Martinière A, Bach L, Krouk G, Gojon A, Nacry P. 2016. Nitrate controls root development through posttranscriptional regulation of the NRT1.1/NPF6.3 transporter sensor. Plant Physiology. 172(2), 1237–1248.","short":"E. Bouguyon, F. Perrine Walker, M. Pervent, J. Rochette, C. Cuesta, E. Benková, A. Martinière, L. Bach, G. Krouk, A. Gojon, P. Nacry, Plant Physiology 172 (2016) 1237–1248.","apa":"Bouguyon, E., Perrine Walker, F., Pervent, M., Rochette, J., Cuesta, C., Benková, E., … Nacry, P. (2016). Nitrate controls root development through posttranscriptional regulation of the NRT1.1/NPF6.3 transporter sensor. <i>Plant Physiology</i>. American Society of Plant Biologists. <a href=\"https://doi.org/10.1104/pp.16.01047\">https://doi.org/10.1104/pp.16.01047</a>","mla":"Bouguyon, Eléonore, et al. “Nitrate Controls Root Development through Posttranscriptional Regulation of the NRT1.1/NPF6.3 Transporter Sensor.” <i>Plant Physiology</i>, vol. 172, no. 2, American Society of Plant Biologists, 2016, pp. 1237–48, doi:<a href=\"https://doi.org/10.1104/pp.16.01047\">10.1104/pp.16.01047</a>.","chicago":"Bouguyon, Eléonore, Francine Perrine Walker, Marjorie Pervent, Juliette Rochette, Candela Cuesta, Eva Benková, Alexandre Martinière, et al. “Nitrate Controls Root Development through Posttranscriptional Regulation of the NRT1.1/NPF6.3 Transporter Sensor.” <i>Plant Physiology</i>. American Society of Plant Biologists, 2016. <a href=\"https://doi.org/10.1104/pp.16.01047\">https://doi.org/10.1104/pp.16.01047</a>.","ama":"Bouguyon E, Perrine Walker F, Pervent M, et al. Nitrate controls root development through posttranscriptional regulation of the NRT1.1/NPF6.3 transporter sensor. <i>Plant Physiology</i>. 2016;172(2):1237-1248. doi:<a href=\"https://doi.org/10.1104/pp.16.01047\">10.1104/pp.16.01047</a>","ieee":"E. Bouguyon <i>et al.</i>, “Nitrate controls root development through posttranscriptional regulation of the NRT1.1/NPF6.3 transporter sensor,” <i>Plant Physiology</i>, vol. 172, no. 2. American Society of Plant Biologists, pp. 1237–1248, 2016."},"acknowledgement":"This work was supported by the Agropolis Foundation (RHIZOPOLIS project to A.G. and P.N., and RTRA 2009-2011 project to F.P.-W.), the Knowledge Biobase Economy European project (KBBE-005-002 Root enhancement for crop improvement to M.P. and P.N.), and the European EURoot project (FP7-KBBE-2011-5 to J.R., A.G., and P.N.). We thank Carine Alcon for the help with analysis of confocal images, Xavier\r\nDumont for assistance with Arabidopsis transformations, staff members of the\r\nInstitut de Biologie Intégrative des Plantes for technical assistance with biological\r\nmaterial culture, and students and trainees for assistance with laboratory work.\r\nConfocal observations were made at the Montpellier RIO Imaging facility.","date_published":"2016-10-01T00:00:00Z","external_id":{"isi":["000391147700046"]},"oa":1,"article_processing_charge":"No","publication_status":"published","fulldoi":"https://doi.org/10.1104/pp.16.01047","oa_version":"Preprint","date_created":"2018-12-11T11:51:07Z","_id":"1281","title":"Nitrate controls root development through posttranscriptional regulation of the NRT1.1/NPF6.3 transporter sensor","department":[{"_id":"EvBe"}],"intvolume":"       172","date_updated":"2025-09-22T08:35:21Z","page":"1237 - 1248","volume":172,"abstract":[{"lang":"eng","text":"Plants are able to modulate root growth and development to optimize their nitrogen nutrition. In Arabidopsis (Arabidopsis thaliana), the adaptive root response to nitrate (NO3 -) depends on the NRT1.1/NPF6.3 transporter/sensor. NRT1.1 represses emergence of lateral root primordia (LRPs) at low concentration or absence of NO3 - through its auxin transport activity that lowers auxin accumulation in LR. However, these functional data strongly contrast with the known transcriptional regulation of NRT1.1, which is markedly repressed in LRPs in the absence of NO3 -. To explain this discrepancy, we investigated in detail the spatiotemporal expression pattern of the NRT1.1 protein during LRP development and combined local transcript analysis with the use of transgenic lines expressing tagged NRT1.1 proteins. Our results show that although NO3 - stimulates NRT1.1 transcription and probably mRNA stability both in primary root tissues and in LRPs, it acts differentially on protein accumulation, depending on the tissues considered with stimulation in cortex and epidermis of the primary root and a strong repression in LRPs and to a lower extent at the primary root tip. This demonstrates that NRT1.1 is strongly regulated at the posttranscriptional level by tissue-specific mechanisms. These mechanisms are crucial for controlling the large palette of adaptive responses to NO3 - mediated by NRT1.1 as they ensure that the protein is present in the proper tissue under the specific conditions where it plays a signaling role in this particular tissue."}],"language":[{"iso":"eng"}],"year":"2016","type":"journal_article","publisher":"American Society of Plant Biologists","publist_id":"6035"},{"day":"01","doi":"10.1007/s11856-016-1419-1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication":"Israel Journal of Mathematics","quality_controlled":"1","month":"10","isi":1,"status":"public","author":[{"last_name":"Gundert","first_name":"Anna","full_name":"Gundert, Anna"},{"last_name":"Wagner","orcid":"0000-0002-1494-0568","full_name":"Wagner, Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","first_name":"Uli"}],"issue":"2","main_file_link":[{"url":"https://arxiv.org/abs/1411.4906","open_access":"1"}],"citation":{"ieee":"A. Gundert and U. Wagner, “On eigenvalues of random complexes,” <i>Israel Journal of Mathematics</i>, vol. 216, no. 2. Springer, pp. 545–582, 2016.","ama":"Gundert A, Wagner U. On eigenvalues of random complexes. <i>Israel Journal of Mathematics</i>. 2016;216(2):545-582. doi:<a href=\"https://doi.org/10.1007/s11856-016-1419-1\">10.1007/s11856-016-1419-1</a>","mla":"Gundert, Anna, and Uli Wagner. “On Eigenvalues of Random Complexes.” <i>Israel Journal of Mathematics</i>, vol. 216, no. 2, Springer, 2016, pp. 545–82, doi:<a href=\"https://doi.org/10.1007/s11856-016-1419-1\">10.1007/s11856-016-1419-1</a>.","apa":"Gundert, A., &#38; Wagner, U. (2016). On eigenvalues of random complexes. <i>Israel Journal of Mathematics</i>. Springer. <a href=\"https://doi.org/10.1007/s11856-016-1419-1\">https://doi.org/10.1007/s11856-016-1419-1</a>","short":"A. Gundert, U. Wagner, Israel Journal of Mathematics 216 (2016) 545–582.","ista":"Gundert A, Wagner U. 2016. On eigenvalues of random complexes. Israel Journal of Mathematics. 216(2), 545–582.","chicago":"Gundert, Anna, and Uli Wagner. “On Eigenvalues of Random Complexes.” <i>Israel Journal of Mathematics</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s11856-016-1419-1\">https://doi.org/10.1007/s11856-016-1419-1</a>."},"scopus_import":"1","external_id":{"isi":["000386356400002"],"arxiv":["1411.4906"]},"date_published":"2016-10-01T00:00:00Z","oa_version":"Preprint","fulldoi":"https://doi.org/10.1007/s11856-016-1419-1","publication_status":"published","article_processing_charge":"No","oa":1,"department":[{"_id":"UlWa"}],"title":"On eigenvalues of random complexes","_id":"1282","date_created":"2018-12-11T11:51:07Z","abstract":[{"text":"We consider higher-dimensional generalizations of the normalized Laplacian and the adjacency matrix of graphs and study their eigenvalues for the Linial–Meshulam model Xk(n, p) of random k-dimensional simplicial complexes on n vertices. We show that for p = Ω(logn/n), the eigenvalues of each of the matrices are a.a.s. concentrated around two values. The main tool, which goes back to the work of Garland, are arguments that relate the eigenvalues of these matrices to those of graphs that arise as links of (k - 2)-dimensional faces. Garland’s result concerns the Laplacian; we develop an analogous result for the adjacency matrix. The same arguments apply to other models of random complexes which allow for dependencies between the choices of k-dimensional simplices. In the second part of the paper, we apply this to the question of possible higher-dimensional analogues of the discrete Cheeger inequality, which in the classical case of graphs relates the eigenvalues of a graph and its edge expansion. It is very natural to ask whether this generalizes to higher dimensions and, in particular, whether the eigenvalues of the higher-dimensional Laplacian capture the notion of coboundary expansion—a higher-dimensional generalization of edge expansion that arose in recent work of Linial and Meshulam and of Gromov; this question was raised, for instance, by Dotterrer and Kahle. We show that this most straightforward version of a higher-dimensional discrete Cheeger inequality fails, in quite a strong way: For every k ≥ 2 and n ∈ N, there is a k-dimensional complex Yn k on n vertices that has strong spectral expansion properties (all nontrivial eigenvalues of the normalised k-dimensional Laplacian lie in the interval [1−O(1/√1), 1+0(1/√1]) but whose coboundary expansion is bounded from above by O(log n/n) and so tends to zero as n → ∞; moreover, Yn k can be taken to have vanishing integer homology in dimension less than k.","lang":"eng"}],"arxiv":1,"volume":216,"page":"545 - 582","intvolume":"       216","date_updated":"2025-09-22T08:34:49Z","publist_id":"6034","publisher":"Springer","type":"journal_article","year":"2016","language":[{"iso":"eng"}]},{"has_accepted_license":"1","file_date_updated":"2025-06-25T11:40:02Z","acknowledgement":"This work was supported by the Austrian Science Fund (FWF01_I1774S) to E.B., the Natural Science Foundation of Fujian Province (2016J01099), and the Fujian–Taiwan Joint Innovative Center for Germplasm Resources and Cultivation of Crops (FJ 2011 Program, No 2015-75) to Q.Z. The authors thank Israel Ausin and Xu Chen for critical reading of the manuscript. ","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"date_published":"2016-10-01T00:00:00Z","external_id":{"isi":["000384958300003"],"pmid":["27553704"]},"corr_author":"1","scopus_import":"1","citation":{"chicago":"Zhu, Qiang, and Eva Benková. “Seedlings’ Strategy to Overcome a Soil Barrier.” <i>Trends in Plant Science</i>. Cell Press, 2016. <a href=\"https://doi.org/10.1016/j.tplants.2016.08.003\">https://doi.org/10.1016/j.tplants.2016.08.003</a>.","apa":"Zhu, Q., &#38; Benková, E. (2016). Seedlings’ strategy to overcome a soil barrier. <i>Trends in Plant Science</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.tplants.2016.08.003\">https://doi.org/10.1016/j.tplants.2016.08.003</a>","ista":"Zhu Q, Benková E. 2016. Seedlings’ strategy to overcome a soil barrier. Trends in Plant Science. 21(10), 809–811.","short":"Q. Zhu, E. Benková, Trends in Plant Science 21 (2016) 809–811.","mla":"Zhu, Qiang, and Eva Benková. “Seedlings’ Strategy to Overcome a Soil Barrier.” <i>Trends in Plant Science</i>, vol. 21, no. 10, Cell Press, 2016, pp. 809–11, doi:<a href=\"https://doi.org/10.1016/j.tplants.2016.08.003\">10.1016/j.tplants.2016.08.003</a>.","ama":"Zhu Q, Benková E. Seedlings’ strategy to overcome a soil barrier. <i>Trends in Plant Science</i>. 2016;21(10):809-811. doi:<a href=\"https://doi.org/10.1016/j.tplants.2016.08.003\">10.1016/j.tplants.2016.08.003</a>","ieee":"Q. Zhu and E. Benková, “Seedlings’ strategy to overcome a soil barrier,” <i>Trends in Plant Science</i>, vol. 21, no. 10. Cell Press, pp. 809–811, 2016."},"issue":"10","author":[{"full_name":"Zhu, Qiang","id":"40A4B9E6-F248-11E8-B48F-1D18A9856A87","first_name":"Qiang","last_name":"Zhu"},{"full_name":"Benková, Eva","orcid":"0000-0002-8510-9739","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","last_name":"Benková"}],"status":"public","ddc":["575"],"month":"10","isi":1,"quality_controlled":"1","publication":"Trends in Plant Science","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1016/j.tplants.2016.08.003","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","article_type":"original","day":"01","language":[{"iso":"eng"}],"project":[{"grant_number":"I 1774-B16","call_identifier":"FWF","name":"Hormone cross-talk drives nutrient dependent plant development","_id":"2542D156-B435-11E9-9278-68D0E5697425"}],"year":"2016","type":"journal_article","publisher":"Cell Press","publist_id":"6033","file":[{"file_size":229094,"date_created":"2018-12-12T10:08:19Z","access_level":"open_access","file_name":"IST-2018-1018-v1+1_Zhu_and_Benkova_TIPS_2016.pdf","relation":"main_file","date_updated":"2025-06-25T11:40:02Z","creator":"system","checksum":"4d569977fad7a7f22b7e3424003d2ab1","content_type":"application/pdf","file_id":"4679"}],"intvolume":"        21","date_updated":"2025-09-22T08:34:15Z","OA_type":"green","page":"809 - 811","volume":21,"pubrep_id":"1018","abstract":[{"lang":"eng","text":"The impact of the plant hormone ethylene on seedling development has long been recognized; however, its ecophysiological relevance is unexplored. Three recent studies demonstrate that ethylene is a critical endogenous integrator of various environmental signals including mechanical stress, light, and oxygen availability during seedling germination and growth through the soil."}],"date_created":"2018-12-11T11:51:08Z","_id":"1283","title":"Seedlings’ strategy to overcome a soil barrier","department":[{"_id":"EvBe"}],"oa":1,"article_processing_charge":"No","OA_place":"repository","publication_status":"published","pmid":1,"fulldoi":"https://doi.org/10.1016/j.tplants.2016.08.003","oa_version":"Submitted Version"},{"publication_status":"published","oa_version":"Submitted Version","fulldoi":"https://doi.org/10.1073/pnas.1611477113","pmid":1,"oa":1,"article_processing_charge":"No","title":"Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants","_id":"1284","date_created":"2018-12-11T11:51:08Z","volume":113,"page":"E5982 - E5991","abstract":[{"text":"Brassinosteroids (BRs) are growth-promoting plant hormones that play a role in abiotic stress responses, but molecular modes that enable this activity remain largely unknown. Here we show that BRs participate in the regulation of freezing tolerance. BR signaling-defective mutants of Arabidopsis thaliana were hypersensitive to freezing before and after cold acclimation. The constitutive activation of BR signaling, in contrast, enhanced freezing resistance. Evidence is provided that the BR-controlled basic helix-loop-helix transcription factor CESTA (CES) can contribute to the constitutive expression of the C-REPEAT/DEHYDRATION-RESPONSIVE ELEMENT BINDING FACTOR (CBF) transcriptional regulators that control cold responsive (COR) gene expression. In addition, CBF-independent classes of BR-regulated COR genes are identified that are regulated in a BR- and CES-dependent manner during cold acclimation. A model is presented in which BRs govern different cold-responsive transcriptional cascades through the post-translational modification of CES and redundantly acting factors. This contributes to the basal resistance against freezing stress, but also to the further improvement of this resistance through cold acclimation.","lang":"eng"}],"extern":"1","intvolume":"       113","date_updated":"2022-02-18T13:41:37Z","publist_id":"6032","year":"2016","language":[{"iso":"eng"}],"publisher":"National Academy of Sciences","type":"journal_article","day":"04","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1073/pnas.1611477113","quality_controlled":"1","publication":"PNAS","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5056081/","open_access":"1"}],"issue":"40","month":"10","status":"public","author":[{"first_name":"Marina","full_name":"Eremina, Marina","last_name":"Eremina"},{"last_name":"Unterholzner","full_name":"Unterholzner, Simon","first_name":"Simon"},{"last_name":"Rathnayake","first_name":"Ajith","full_name":"Rathnayake, Ajith"},{"last_name":"Castellanos","full_name":"Castellanos, Marcos","first_name":"Marcos"},{"last_name":"Khan-Djamei","id":"391B5BBC-F248-11E8-B48F-1D18A9856A87","full_name":"Khan-Djamei, Mamoona","first_name":"Mamoona"},{"full_name":"Kügler, Karl","first_name":"Karl","last_name":"Kügler"},{"last_name":"May","full_name":"May, Sean","first_name":"Sean"},{"full_name":"Mayer, Klaus","first_name":"Klaus","last_name":"Mayer"},{"last_name":"Rozhon","full_name":"Rozhon, Wilfried","first_name":"Wilfried"},{"last_name":"Poppenberger","first_name":"Brigitte","full_name":"Poppenberger, Brigitte"}],"citation":{"ama":"Eremina M, Unterholzner S, Rathnayake A, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. <i>PNAS</i>. 2016;113(40):E5982-E5991. doi:<a href=\"https://doi.org/10.1073/pnas.1611477113\">10.1073/pnas.1611477113</a>","ieee":"M. Eremina <i>et al.</i>, “Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants,” <i>PNAS</i>, vol. 113, no. 40. National Academy of Sciences, pp. E5982–E5991, 2016.","chicago":"Eremina, Marina, Simon Unterholzner, Ajith Rathnayake, Marcos Castellanos, Mamoona Khan-Djamei, Karl Kügler, Sean May, Klaus Mayer, Wilfried Rozhon, and Brigitte Poppenberger. “Brassinosteroids Participate in the Control of Basal and Acquired Freezing Tolerance of Plants.” <i>PNAS</i>. National Academy of Sciences, 2016. <a href=\"https://doi.org/10.1073/pnas.1611477113\">https://doi.org/10.1073/pnas.1611477113</a>.","short":"M. Eremina, S. Unterholzner, A. Rathnayake, M. Castellanos, M. Khan-Djamei, K. Kügler, S. May, K. Mayer, W. Rozhon, B. Poppenberger, PNAS 113 (2016) E5982–E5991.","apa":"Eremina, M., Unterholzner, S., Rathnayake, A., Castellanos, M., Khan-Djamei, M., Kügler, K., … Poppenberger, B. (2016). Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1611477113\">https://doi.org/10.1073/pnas.1611477113</a>","ista":"Eremina M, Unterholzner S, Rathnayake A, Castellanos M, Khan-Djamei M, Kügler K, May S, Mayer K, Rozhon W, Poppenberger B. 2016. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. PNAS. 113(40), E5982–E5991.","mla":"Eremina, Marina, et al. “Brassinosteroids Participate in the Control of Basal and Acquired Freezing Tolerance of Plants.” <i>PNAS</i>, vol. 113, no. 40, National Academy of Sciences, 2016, pp. E5982–91, doi:<a href=\"https://doi.org/10.1073/pnas.1611477113\">10.1073/pnas.1611477113</a>."},"scopus_import":"1","external_id":{"pmid":["27489342"]},"acknowledgement":"We thank Joanne Chory for seeds of the bee1 bee2 bee3, bes1-D, and bzr1-1D mutants and the 35S:BRI1-GFP line; Irene Ziegler, Clarissa Fahrig, and Renata Milcevicova for technical assistance; and the horticultural staff of the TUMs Gewächshauslaborzentrum Dürnast for plant care. This work was supported by funds from the Austrian Science Fund (Project P22734 to B.P.), the Deutsche Forschungsgemeinschaft (Project PO1640/4 to B.P. and SFB924 to B.P. and K.F.X.M.), and a TUM doctoral fellowship (to M.E.). M.E. and S.J.U. were members of the TUM graduate school. ","date_published":"2016-10-04T00:00:00Z"},{"day":"15","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1364/OL.41.004621","quality_controlled":"1","publication":"Optics Letters","issue":"20","main_file_link":[{"url":"https://arxiv.org/abs/1609.02863","open_access":"1"}],"isi":1,"status":"public","month":"10","author":[{"id":"456187FC-F248-11E8-B48F-1D18A9856A87","full_name":"Midya, Bikashkali","first_name":"Bikashkali","last_name":"Midya"},{"last_name":"Konotop","full_name":"Konotop, Vladimir","first_name":"Vladimir"}],"citation":{"short":"B. Midya, V. Konotop, Optics Letters 41 (2016) 4621–4624.","ista":"Midya B, Konotop V. 2016. Modes and exceptional points in waveguides with impedance boundary conditions. Optics Letters. 41(20), 4621–4624.","apa":"Midya, B., &#38; Konotop, V. (2016). Modes and exceptional points in waveguides with impedance boundary conditions. <i>Optics Letters</i>. Optica Publishing Group. <a href=\"https://doi.org/10.1364/OL.41.004621\">https://doi.org/10.1364/OL.41.004621</a>","mla":"Midya, Bikashkali, and Vladimir Konotop. “Modes and Exceptional Points in Waveguides with Impedance Boundary Conditions.” <i>Optics Letters</i>, vol. 41, no. 20, Optica Publishing Group, 2016, pp. 4621–24, doi:<a href=\"https://doi.org/10.1364/OL.41.004621\">10.1364/OL.41.004621</a>.","chicago":"Midya, Bikashkali, and Vladimir Konotop. “Modes and Exceptional Points in Waveguides with Impedance Boundary Conditions.” <i>Optics Letters</i>. Optica Publishing Group, 2016. <a href=\"https://doi.org/10.1364/OL.41.004621\">https://doi.org/10.1364/OL.41.004621</a>.","ieee":"B. Midya and V. Konotop, “Modes and exceptional points in waveguides with impedance boundary conditions,” <i>Optics Letters</i>, vol. 41, no. 20. Optica Publishing Group, pp. 4621–4624, 2016.","ama":"Midya B, Konotop V. Modes and exceptional points in waveguides with impedance boundary conditions. <i>Optics Letters</i>. 2016;41(20):4621-4624. doi:<a href=\"https://doi.org/10.1364/OL.41.004621\">10.1364/OL.41.004621</a>"},"scopus_import":"1","ec_funded":1,"external_id":{"isi":["000386854500005"],"arxiv":["1609.02863"]},"corr_author":"1","acknowledgement":"The research of B.M. is supported by the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant No. [291734].","date_published":"2016-10-15T00:00:00Z","publication_status":"published","oa_version":"Preprint","fulldoi":"https://doi.org/10.1364/OL.41.004621","oa":1,"article_processing_charge":"No","title":"Modes and exceptional points in waveguides with impedance boundary conditions","_id":"1287","department":[{"_id":"MiLe"}],"date_created":"2018-12-11T11:51:09Z","volume":41,"page":"4621 - 4624","arxiv":1,"abstract":[{"lang":"eng","text":"A planar waveguide with an impedance boundary, composed of nonperfect metallic plates, and with passive or active dielectric filling, is considered. We show the possibility of selective mode guiding and amplification when a homogeneous pump is added to the dielectric and analyze differences in TE and TM mode propagation. Such a non-conservative system is also shown to feature exceptional points for specific and experimentally tunable parameters, which are described for a particular case of transparent dielectric."}],"date_updated":"2025-09-22T08:32:34Z","intvolume":"        41","publist_id":"6029","year":"2016","project":[{"name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"291734"}],"language":[{"iso":"eng"}],"publisher":"Optica Publishing Group","type":"journal_article"},{"external_id":{"isi":["000386874700003"]},"has_accepted_license":"1","file_date_updated":"2020-07-14T12:44:42Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"date_published":"2016-11-01T00:00:00Z","citation":{"ieee":"O. Dunaeva <i>et al.</i>, “The classification of endoscopy images with persistent homology,” <i>Pattern Recognition Letters</i>, vol. 83, no. 1. Elsevier, pp. 13–22, 2016.","ama":"Dunaeva O, Edelsbrunner H, Lukyanov A, et al. The classification of endoscopy images with persistent homology. <i>Pattern Recognition Letters</i>. 2016;83(1):13-22. doi:<a href=\"https://doi.org/10.1016/j.patrec.2015.12.012\">10.1016/j.patrec.2015.12.012</a>","apa":"Dunaeva, O., Edelsbrunner, H., Lukyanov, A., Machin, M., Malkova, D., Kuvaev, R., &#38; Kashin, S. (2016). The classification of endoscopy images with persistent homology. <i>Pattern Recognition Letters</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.patrec.2015.12.012\">https://doi.org/10.1016/j.patrec.2015.12.012</a>","ista":"Dunaeva O, Edelsbrunner H, Lukyanov A, Machin M, Malkova D, Kuvaev R, Kashin S. 2016. The classification of endoscopy images with persistent homology. Pattern Recognition Letters. 83(1), 13–22.","short":"O. Dunaeva, H. Edelsbrunner, A. Lukyanov, M. Machin, D. Malkova, R. Kuvaev, S. Kashin, Pattern Recognition Letters 83 (2016) 13–22.","mla":"Dunaeva, Olga, et al. “The Classification of Endoscopy Images with Persistent Homology.” <i>Pattern Recognition Letters</i>, vol. 83, no. 1, Elsevier, 2016, pp. 13–22, doi:<a href=\"https://doi.org/10.1016/j.patrec.2015.12.012\">10.1016/j.patrec.2015.12.012</a>.","chicago":"Dunaeva, Olga, Herbert Edelsbrunner, Anton Lukyanov, Michael Machin, Daria Malkova, Roman Kuvaev, and Sergey Kashin. “The Classification of Endoscopy Images with Persistent Homology.” <i>Pattern Recognition Letters</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.patrec.2015.12.012\">https://doi.org/10.1016/j.patrec.2015.12.012</a>."},"scopus_import":"1","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"1568"}]},"quality_controlled":"1","publication":"Pattern Recognition Letters","issue":"1","author":[{"full_name":"Dunaeva, Olga","first_name":"Olga","last_name":"Dunaeva"},{"last_name":"Edelsbrunner","first_name":"Herbert","orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Anton","full_name":"Lukyanov, Anton","last_name":"Lukyanov"},{"last_name":"Machin","first_name":"Michael","full_name":"Machin, Michael"},{"last_name":"Malkova","first_name":"Daria","full_name":"Malkova, Daria"},{"first_name":"Roman","full_name":"Kuvaev, Roman","last_name":"Kuvaev"},{"full_name":"Kashin, Sergey","first_name":"Sergey","last_name":"Kashin"}],"status":"public","month":"11","ddc":["004","514"],"isi":1,"day":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1016/j.patrec.2015.12.012","publist_id":"6027","language":[{"iso":"eng"}],"year":"2016","type":"journal_article","publisher":"Elsevier","page":"13 - 22","volume":83,"abstract":[{"text":"Aiming at the automatic diagnosis of tumors using narrow band imaging (NBI) magnifying endoscopic (ME) images of the stomach, we combine methods from image processing, topology, geometry, and machine learning to classify patterns into three classes: oval, tubular and irregular. Training the algorithm on a small number of images of each type, we achieve a high rate of correct classifications. The analysis of the learning algorithm reveals that a handful of geometric and topological features are responsible for the overwhelming majority of decisions.","lang":"eng"}],"pubrep_id":"975","file":[{"relation":"main_file","date_updated":"2020-07-14T12:44:42Z","file_name":"2016-Edelsbrunner_The_classification.pdf","access_level":"open_access","file_id":"6334","checksum":"33458bbb8c32a339e1adeca6d5a1112d","content_type":"application/pdf","creator":"dernst","date_created":"2019-04-17T07:55:51Z","file_size":1921113}],"date_updated":"2025-09-23T13:44:16Z","intvolume":"        83","_id":"1289","title":"The classification of endoscopy images with persistent homology","department":[{"_id":"HeEd"}],"date_created":"2018-12-11T11:51:10Z","publication_status":"published","fulldoi":"https://doi.org/10.1016/j.patrec.2015.12.012","oa_version":"Submitted Version","oa":1,"article_processing_charge":"No"},{"main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5069154/","open_access":"1"}],"issue":"11","author":[{"last_name":"Stone","first_name":"Laura","full_name":"Stone, Laura"},{"first_name":"Michael","full_name":"Baym, Michael","last_name":"Baym"},{"last_name":"Lieberman","first_name":"Tami","full_name":"Lieberman, Tami"},{"last_name":"Chait","first_name":"Remy P","full_name":"Chait, Remy P","orcid":"0000-0003-0876-3187","id":"3464AE84-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Clardy","full_name":"Clardy, Jon","first_name":"Jon"},{"full_name":"Kishony, Roy","first_name":"Roy","last_name":"Kishony"}],"month":"11","status":"public","isi":1,"quality_controlled":"1","publication":"Nature Chemical Biology","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1038/nchembio.2176","day":"01","acknowledgement":"This work was supported in part by National Institute of Allergy and Infectious Diseases grant U54 AI057159, US National Institutes of Health grants R01 GM081617 (to R.K.) and GM086258 (to J.C.), European Research Council FP7 ERC grant 281891 (to R.K.) and a National Science Foundation Graduate Fellowship (to L.K.S.).\r\n","date_published":"2016-11-01T00:00:00Z","external_id":{"isi":["000386798800008"]},"scopus_import":"1","citation":{"chicago":"Stone, Laura, Michael Baym, Tami Lieberman, Remy P Chait, Jon Clardy, and Roy Kishony. “Compounds That Select against the Tetracycline-Resistance Efflux Pump.” <i>Nature Chemical Biology</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nchembio.2176\">https://doi.org/10.1038/nchembio.2176</a>.","apa":"Stone, L., Baym, M., Lieberman, T., Chait, R. P., Clardy, J., &#38; Kishony, R. (2016). Compounds that select against the tetracycline-resistance efflux pump. <i>Nature Chemical Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nchembio.2176\">https://doi.org/10.1038/nchembio.2176</a>","ista":"Stone L, Baym M, Lieberman T, Chait RP, Clardy J, Kishony R. 2016. Compounds that select against the tetracycline-resistance efflux pump. Nature Chemical Biology. 12(11), 902–904.","short":"L. Stone, M. Baym, T. Lieberman, R.P. Chait, J. Clardy, R. Kishony, Nature Chemical Biology 12 (2016) 902–904.","mla":"Stone, Laura, et al. “Compounds That Select against the Tetracycline-Resistance Efflux Pump.” <i>Nature Chemical Biology</i>, vol. 12, no. 11, Nature Publishing Group, 2016, pp. 902–04, doi:<a href=\"https://doi.org/10.1038/nchembio.2176\">10.1038/nchembio.2176</a>.","ieee":"L. Stone, M. Baym, T. Lieberman, R. P. Chait, J. Clardy, and R. Kishony, “Compounds that select against the tetracycline-resistance efflux pump,” <i>Nature Chemical Biology</i>, vol. 12, no. 11. Nature Publishing Group, pp. 902–904, 2016.","ama":"Stone L, Baym M, Lieberman T, Chait RP, Clardy J, Kishony R. Compounds that select against the tetracycline-resistance efflux pump. <i>Nature Chemical Biology</i>. 2016;12(11):902-904. doi:<a href=\"https://doi.org/10.1038/nchembio.2176\">10.1038/nchembio.2176</a>"},"date_created":"2018-12-11T11:51:10Z","_id":"1290","title":"Compounds that select against the tetracycline-resistance efflux pump","department":[{"_id":"CaGu"},{"_id":"GaTk"}],"oa":1,"article_processing_charge":"No","publication_status":"published","fulldoi":"https://doi.org/10.1038/nchembio.2176","oa_version":"Preprint","language":[{"iso":"eng"}],"year":"2016","type":"journal_article","publisher":"Nature Publishing Group","publist_id":"6026","intvolume":"        12","date_updated":"2025-09-22T08:30:48Z","page":"902 - 904","volume":12,"abstract":[{"text":"We developed a competition-based screening strategy to identify compounds that invert the selective advantage of antibiotic resistance. Using our assay, we screened over 19,000 compounds for the ability to select against the TetA tetracycline-resistance efflux pump in Escherichia coli and identified two hits, β-thujaplicin and disulfiram. Treating a tetracycline-resistant population with β-thujaplicin selects for loss of the resistance gene, enabling an effective second-phase treatment with doxycycline.","lang":"eng"}]},{"status":"public","month":"02","ddc":["000"],"author":[{"last_name":"Schlögl","first_name":"Alois","full_name":"Schlögl, Alois","orcid":"0000-0002-5621-8100","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Stephan","id":"4D0BC184-F248-11E8-B48F-1D18A9856A87","full_name":"Stadlbauer, Stephan","last_name":"Stadlbauer"}],"date_created":"2023-05-05T12:54:47Z","main_file_link":[{"url":"https://vsc.ac.at/fileadmin/user_upload/vsc/conferences/ahpc16/BOOKLET_AHPC16.pdf","open_access":"1"}],"department":[{"_id":"ScienComp"},{"_id":"PeJo"}],"publication":"AHPC16 - Austrian HPC Meeting 2016","title":"High performance computing at IST Austria: Modelling the human hippocampus","_id":"12903","quality_controlled":"1","article_processing_charge":"No","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","day":"24","publication_status":"published","publisher":"VSC - Vienna Scientific Cluster","type":"conference_abstract","date_published":"2016-02-24T00:00:00Z","year":"2016","file_date_updated":"2023-05-16T07:03:56Z","has_accepted_license":"1","language":[{"iso":"eng"}],"corr_author":"1","date_updated":"2024-10-09T21:05:23Z","conference":{"name":"AHPC: Austrian HPC Meeting","start_date":"2016-02-22","location":"Grundlsee, Austria","end_date":"2016-02-24"},"file":[{"checksum":"4a7b00362e81358d568f5e216fa03c3e","content_type":"application/pdf","file_id":"12968","creator":"dernst","file_name":"2016_AHPC_Schloegl.pdf","access_level":"open_access","relation":"main_file","date_updated":"2023-05-16T07:03:56Z","success":1,"date_created":"2023-05-16T07:03:56Z","file_size":1073523}],"citation":{"ieee":"A. Schlögl and S. Stadlbauer, “High performance computing at IST Austria: Modelling the human hippocampus,” in <i>AHPC16 - Austrian HPC Meeting 2016</i>, Grundlsee, Austria, 2016, p. 37.","ama":"Schlögl A, Stadlbauer S. High performance computing at IST Austria: Modelling the human hippocampus. In: <i>AHPC16 - Austrian HPC Meeting 2016</i>. VSC - Vienna Scientific Cluster; 2016:37.","chicago":"Schlögl, Alois, and Stephan Stadlbauer. “High Performance Computing at IST Austria: Modelling the Human Hippocampus.” In <i>AHPC16 - Austrian HPC Meeting 2016</i>, 37. VSC - Vienna Scientific Cluster, 2016.","mla":"Schlögl, Alois, and Stephan Stadlbauer. “High Performance Computing at IST Austria: Modelling the Human Hippocampus.” <i>AHPC16 - Austrian HPC Meeting 2016</i>, VSC - Vienna Scientific Cluster, 2016, p. 37.","apa":"Schlögl, A., &#38; Stadlbauer, S. (2016). High performance computing at IST Austria: Modelling the human hippocampus. In <i>AHPC16 - Austrian HPC Meeting 2016</i> (p. 37). Grundlsee, Austria: VSC - Vienna Scientific Cluster.","short":"A. Schlögl, S. Stadlbauer, in:, AHPC16 - Austrian HPC Meeting 2016, VSC - Vienna Scientific Cluster, 2016, p. 37.","ista":"Schlögl A, Stadlbauer S. 2016. High performance computing at IST Austria: Modelling the human hippocampus. AHPC16 - Austrian HPC Meeting 2016. AHPC: Austrian HPC Meeting, 37."},"page":"37"},{"scopus_import":"1","citation":{"chicago":"Giuliani, Alessandro, and Robert Seiringer. “Periodic Striped Ground States in Ising Models with Competing Interactions.” <i>Communications in Mathematical Physics</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s00220-016-2665-0\">https://doi.org/10.1007/s00220-016-2665-0</a>.","ista":"Giuliani A, Seiringer R. 2016. Periodic striped ground states in Ising models with competing interactions. Communications in Mathematical Physics. 347(3), 983–1007.","apa":"Giuliani, A., &#38; Seiringer, R. (2016). Periodic striped ground states in Ising models with competing interactions. <i>Communications in Mathematical Physics</i>. Springer. <a href=\"https://doi.org/10.1007/s00220-016-2665-0\">https://doi.org/10.1007/s00220-016-2665-0</a>","short":"A. Giuliani, R. Seiringer, Communications in Mathematical Physics 347 (2016) 983–1007.","mla":"Giuliani, Alessandro, and Robert Seiringer. “Periodic Striped Ground States in Ising Models with Competing Interactions.” <i>Communications in Mathematical Physics</i>, vol. 347, no. 3, Springer, 2016, pp. 983–1007, doi:<a href=\"https://doi.org/10.1007/s00220-016-2665-0\">10.1007/s00220-016-2665-0</a>.","ieee":"A. Giuliani and R. Seiringer, “Periodic striped ground states in Ising models with competing interactions,” <i>Communications in Mathematical Physics</i>, vol. 347, no. 3. Springer, pp. 983–1007, 2016.","ama":"Giuliani A, Seiringer R. Periodic striped ground states in Ising models with competing interactions. <i>Communications in Mathematical Physics</i>. 2016;347(3):983-1007. doi:<a href=\"https://doi.org/10.1007/s00220-016-2665-0\">10.1007/s00220-016-2665-0</a>"},"has_accepted_license":"1","file_date_updated":"2020-07-14T12:44:42Z","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). The\r\nresearch leading to these results has received funding from the European Research Council under the European\r\nUnion’s Seventh Framework Programme ERC Starting Grant CoMBoS (Grant Agreement No. 239694), from\r\nthe Italian PRIN National Grant Geometric and analytic theory of Hamiltonian systems in finite and infinite\r\ndimensions, and the Austrian Science Fund (FWF), project Nr. P 27533-N27. Part of this work was completed\r\nduring a stay at the Erwin Schrödinger Institute for Mathematical Physics in Vienna (ESI program 2015\r\n“Quantum many-body systems, random matrices, and disorder”), whose hospitality and financial support is\r\ngratefully acknowledged.","date_published":"2016-11-01T00:00:00Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"isi":["000385162900010"]},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1007/s00220-016-2665-0","day":"01","issue":"3","author":[{"last_name":"Giuliani","full_name":"Giuliani, Alessandro","first_name":"Alessandro"},{"last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521","first_name":"Robert"}],"isi":1,"ddc":["510","530"],"month":"11","status":"public","quality_controlled":"1","publication":"Communications in Mathematical Physics","file":[{"access_level":"open_access","file_name":"IST-2016-688-v1+1_s00220-016-2665-0.pdf","date_updated":"2020-07-14T12:44:42Z","relation":"main_file","content_type":"application/pdf","checksum":"3c6e08c048fc462e312788be72874bb1","file_id":"4725","creator":"system","date_created":"2018-12-12T10:09:02Z","file_size":794983}],"intvolume":"       347","date_updated":"2025-09-22T08:30:16Z","page":"983 - 1007","volume":347,"abstract":[{"lang":"eng","text":"We consider Ising models in two and three dimensions, with short range ferromagnetic and long range, power-law decaying, antiferromagnetic interactions. We let J be the ratio between the strength of the ferromagnetic to antiferromagnetic interactions. The competition between these two kinds of interactions induces the system to form domains of minus spins in a background of plus spins, or vice versa. If the decay exponent p of the long range interaction is larger than d + 1, with d the space dimension, this happens for all values of J smaller than a critical value Jc(p), beyond which the ground state is homogeneous. In this paper, we give a characterization of the infinite volume ground states of the system, for p &gt; 2d and J in a left neighborhood of Jc(p). In particular, we prove that the quasi-one-dimensional states consisting of infinite stripes (d = 2) or slabs (d = 3), all of the same optimal width and orientation, and alternating magnetization, are infinite volume ground states. Our proof is based on localization bounds combined with reflection positivity."}],"pubrep_id":"688","language":[{"iso":"eng"}],"year":"2016","project":[{"grant_number":"P27533_N27","call_identifier":"FWF","_id":"25C878CE-B435-11E9-9278-68D0E5697425","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"type":"journal_article","publisher":"Springer","publist_id":"6025","oa":1,"article_processing_charge":"No","publication_status":"published","fulldoi":"https://doi.org/10.1007/s00220-016-2665-0","oa_version":"Published Version","date_created":"2018-12-11T11:51:11Z","_id":"1291","title":"Periodic striped ground states in Ising models with competing interactions","department":[{"_id":"RoSe"}]},{"date_created":"2018-12-11T11:51:11Z","department":[{"_id":"HeEd"}],"_id":"1292","title":"Computing the Thurston–Bennequin invariant in open books","article_processing_charge":"No","oa":1,"fulldoi":"https://doi.org/10.1007/s10474-016-0648-4","oa_version":"Preprint","publication_status":"published","type":"journal_article","publisher":"Springer","language":[{"iso":"eng"}],"year":"2016","publist_id":"6023","date_updated":"2025-09-22T08:29:12Z","intvolume":"       150","arxiv":1,"abstract":[{"lang":"eng","text":"We give explicit formulas and algorithms for the computation of the Thurston–Bennequin invariant of a nullhomologous Legendrian knot on a page of a contact open book and on Heegaard surfaces in convex position. Furthermore, we extend the results to rationally nullhomologous knots in arbitrary 3-manifolds."}],"page":"441 - 455","volume":150,"author":[{"last_name":"Durst","first_name":"Sebastian","full_name":"Durst, Sebastian"},{"first_name":"Marc","full_name":"Kegel, Marc","last_name":"Kegel"},{"last_name":"Klukas","first_name":"Mirko D","full_name":"Klukas, Mirko D","id":"34927512-F248-11E8-B48F-1D18A9856A87"}],"status":"public","month":"12","isi":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1605.00794"}],"issue":"2","publication":"Acta Mathematica Hungarica","quality_controlled":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1007/s10474-016-0648-4","day":"01","date_published":"2016-12-01T00:00:00Z","acknowledgement":"The authors are veryg rateful to Hansj ̈org Geiges \r\nfor fruitful discussions and advice and Christian Evers for helpful remarks on a draft version.","corr_author":"1","external_id":{"isi":["000387471100014"],"arxiv":["1605.00794"]},"scopus_import":"1","citation":{"ieee":"S. Durst, M. Kegel, and M. D. Klukas, “Computing the Thurston–Bennequin invariant in open books,” <i>Acta Mathematica Hungarica</i>, vol. 150, no. 2. Springer, pp. 441–455, 2016.","ama":"Durst S, Kegel M, Klukas MD. Computing the Thurston–Bennequin invariant in open books. <i>Acta Mathematica Hungarica</i>. 2016;150(2):441-455. doi:<a href=\"https://doi.org/10.1007/s10474-016-0648-4\">10.1007/s10474-016-0648-4</a>","chicago":"Durst, Sebastian, Marc Kegel, and Mirko D Klukas. “Computing the Thurston–Bennequin Invariant in Open Books.” <i>Acta Mathematica Hungarica</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s10474-016-0648-4\">https://doi.org/10.1007/s10474-016-0648-4</a>.","mla":"Durst, Sebastian, et al. “Computing the Thurston–Bennequin Invariant in Open Books.” <i>Acta Mathematica Hungarica</i>, vol. 150, no. 2, Springer, 2016, pp. 441–55, doi:<a href=\"https://doi.org/10.1007/s10474-016-0648-4\">10.1007/s10474-016-0648-4</a>.","ista":"Durst S, Kegel M, Klukas MD. 2016. Computing the Thurston–Bennequin invariant in open books. Acta Mathematica Hungarica. 150(2), 441–455.","apa":"Durst, S., Kegel, M., &#38; Klukas, M. D. (2016). Computing the Thurston–Bennequin invariant in open books. <i>Acta Mathematica Hungarica</i>. Springer. <a href=\"https://doi.org/10.1007/s10474-016-0648-4\">https://doi.org/10.1007/s10474-016-0648-4</a>","short":"S. Durst, M. Kegel, M.D. Klukas, Acta Mathematica Hungarica 150 (2016) 441–455."}},{"citation":{"ieee":"L. T. Solus, C. Uhler, and R. Yoshida, “Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors,” <i>Linear Algebra and Its Applications</i>, vol. 509. Elsevier, pp. 247–275, 2016.","ama":"Solus LT, Uhler C, Yoshida R. Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. <i>Linear Algebra and Its Applications</i>. 2016;509:247-275. doi:<a href=\"https://doi.org/10.1016/j.laa.2016.07.026\">10.1016/j.laa.2016.07.026</a>","ista":"Solus LT, Uhler C, Yoshida R. 2016. Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. 509, 247–275.","short":"L.T. Solus, C. Uhler, R. Yoshida, Linear Algebra and Its Applications 509 (2016) 247–275.","apa":"Solus, L. T., Uhler, C., &#38; Yoshida, R. (2016). Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. <i>Linear Algebra and Its Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.laa.2016.07.026\">https://doi.org/10.1016/j.laa.2016.07.026</a>","mla":"Solus, Liam T., et al. “Extremal Positive Semidefinite Matrices Whose Sparsity Pattern Is given by Graphs without K5 Minors.” <i>Linear Algebra and Its Applications</i>, vol. 509, Elsevier, 2016, pp. 247–75, doi:<a href=\"https://doi.org/10.1016/j.laa.2016.07.026\">10.1016/j.laa.2016.07.026</a>.","chicago":"Solus, Liam T, Caroline Uhler, and Ruriko Yoshida. “Extremal Positive Semidefinite Matrices Whose Sparsity Pattern Is given by Graphs without K5 Minors.” <i>Linear Algebra and Its Applications</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.laa.2016.07.026\">https://doi.org/10.1016/j.laa.2016.07.026</a>."},"scopus_import":"1","external_id":{"arxiv":["1506.06702"],"isi":["000385338000012"]},"date_published":"2016-11-15T00:00:00Z","acknowledgement":"We wish to thank Alexander Engström and Bernd Sturmfels for various valuable discussions and insights. We also thank the two anonymous referees for their thoughtful feedback on the paper. CU was partially supported by the Austrian Science Fund (FWF) Y 903-N35.","day":"15","doi":"10.1016/j.laa.2016.07.026","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication":"Linear Algebra and Its Applications","quality_controlled":"1","author":[{"id":"2AADA620-F248-11E8-B48F-1D18A9856A87","full_name":"Solus, Liam T","first_name":"Liam T","last_name":"Solus"},{"orcid":"0000-0002-7008-0216","full_name":"Uhler, Caroline","id":"49ADD78E-F248-11E8-B48F-1D18A9856A87","first_name":"Caroline","last_name":"Uhler"},{"full_name":"Yoshida, Ruriko","first_name":"Ruriko","last_name":"Yoshida"}],"isi":1,"status":"public","month":"11","main_file_link":[{"url":"https://arxiv.org/abs/1506.06702","open_access":"1"}],"arxiv":1,"abstract":[{"text":"For a graph G with p vertices the closed convex cone S⪰0(G) consists of all real positive semidefinite p×p matrices whose sparsity pattern is given by G, that is, those matrices with zeros in the off-diagonal entries corresponding to nonedges of G. The extremal rays of this cone and their associated ranks have applications to matrix completion problems, maximum likelihood estimation in Gaussian graphical models in statistics, and Gauss elimination for sparse matrices. While the maximum rank of an extremal ray in S⪰0(G), known as the sparsity order of G, has been characterized for different classes of graphs, we here study all possible extremal ranks of S⪰0(G). We investigate when the geometry of the (±1)-cut polytope of G yields a polyhedral characterization of the set of extremal ranks of S⪰0(G). For a graph G without K5 minors, we show that appropriately chosen normal vectors to the facets of the (±1)-cut polytope of G specify the off-diagonal entries of extremal matrices in S⪰0(G). We also prove that for appropriately chosen scalars the constant term of the linear equation of each facet-supporting hyperplane is the rank of its corresponding extremal matrix in S⪰0(G). Furthermore, we show that if G is series-parallel then this gives a complete characterization of all possible extremal ranks of S⪰0(G). Consequently, the sparsity order problem for series-parallel graphs can be solved in terms of polyhedral geometry.","lang":"eng"}],"page":"247 - 275","volume":509,"date_updated":"2025-09-22T08:29:45Z","intvolume":"       509","publist_id":"6024","type":"journal_article","publisher":"Elsevier","language":[{"iso":"eng"}],"project":[{"grant_number":"Y 903-N35","call_identifier":"FWF","_id":"2530CA10-B435-11E9-9278-68D0E5697425","name":"Gaussian Graphical Models: Theory and Applications"}],"year":"2016","fulldoi":"https://doi.org/10.1016/j.laa.2016.07.026","oa_version":"Preprint","publication_status":"published","article_processing_charge":"No","oa":1,"department":[{"_id":"CaUh"}],"_id":"1293","title":"Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors","date_created":"2018-12-11T11:51:11Z"},{"volume":5,"abstract":[{"text":"Resolving patterns of synaptic connectivity in neural circuits currently requires serial section electron microscopy. However, complete circuit reconstruction is prohibitively slow and may not be necessary for many purposes such as comparing neuronal structure and connectivity among multiple animals. Here, we present an alternative strategy, targeted reconstruction of specific neuronal types. We used viral vectors to deliver peroxidase derivatives, which catalyze production of an electron-dense tracer, to genetically identify neurons, and developed a protocol that enhances the electron-density of the labeled cells while retaining the quality of the ultrastructure. The high contrast of the marked neurons enabled two innovations that speed data acquisition: targeted high-resolution reimaging of regions selected from rapidly-acquired lower resolution reconstruction, and an unsupervised segmentation algorithm. This pipeline reduces imaging and reconstruction times by two orders of magnitude, facilitating directed inquiry of circuit motifs.","lang":"eng"}],"extern":"1","OA_type":"gold","intvolume":"         5","date_updated":"2026-05-18T12:14:26Z","publist_id":"5965","year":"2016","language":[{"iso":"eng"}],"publisher":"Sciences Publications","type":"journal_article","publication_status":"published","OA_place":"publisher","oa_version":"Published Version","fulldoi":"https://doi.org/10.7554/eLife.15015","pmid":1,"DOAJ_listed":"1","oa":1,"article_processing_charge":"No","title":"Reconstruction of genetically identified neurons imaged by serial-section electron microscopy","_id":"1306","date_created":"2018-12-11T11:51:16Z","publication_identifier":{"eissn":["2050-084X"]},"citation":{"mla":"Jösch, Maximilian A., et al. “Reconstruction of Genetically Identified Neurons Imaged by Serial-Section Electron Microscopy.” <i>ELife</i>, vol. 5, no. 2016JULY, Sciences Publications, 2016, doi:<a href=\"https://doi.org/10.7554/eLife.15015\">10.7554/eLife.15015</a>.","short":"M.A. Jösch, D. Mankus, M. Yamagata, A. Shahbazi, R. Schalek, A. Suissa Peleg, M. Meister, J. Lichtman, W. Scheirer, J. Sanes, ELife 5 (2016).","ista":"Jösch MA, Mankus D, Yamagata M, Shahbazi A, Schalek R, Suissa Peleg A, Meister M, Lichtman J, Scheirer W, Sanes J. 2016. Reconstruction of genetically identified neurons imaged by serial-section electron microscopy. eLife. 5(2016JULY).","apa":"Jösch, M. A., Mankus, D., Yamagata, M., Shahbazi, A., Schalek, R., Suissa Peleg, A., … Sanes, J. (2016). Reconstruction of genetically identified neurons imaged by serial-section electron microscopy. <i>ELife</i>. Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.15015\">https://doi.org/10.7554/eLife.15015</a>","chicago":"Jösch, Maximilian A, David Mankus, Masahito Yamagata, Ali Shahbazi, Richard Schalek, Adi Suissa Peleg, Markus Meister, Jeff Lichtman, Walter Scheirer, and Joshua Sanes. “Reconstruction of Genetically Identified Neurons Imaged by Serial-Section Electron Microscopy.” <i>ELife</i>. Sciences Publications, 2016. <a href=\"https://doi.org/10.7554/eLife.15015\">https://doi.org/10.7554/eLife.15015</a>.","ama":"Jösch MA, Mankus D, Yamagata M, et al. Reconstruction of genetically identified neurons imaged by serial-section electron microscopy. <i>eLife</i>. 2016;5(2016JULY). doi:<a href=\"https://doi.org/10.7554/eLife.15015\">10.7554/eLife.15015</a>","ieee":"M. A. Jösch <i>et al.</i>, “Reconstruction of genetically identified neurons imaged by serial-section electron microscopy,” <i>eLife</i>, vol. 5, no. 2016JULY. Sciences Publications, 2016."},"scopus_import":"1","external_id":{"pmid":["27383271"]},"acknowledgement":"This work was supported by NIH grant NS76467 to MM, JL and JRS, an HHMI Collaborative Innovation Award to JRS, an IARPA contract #D16PC00002 to WJS and by The International Human Frontier Science Program Organization fellowship to MJ.","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2016-07-07T00:00:00Z","day":"07","article_type":"original","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","doi":"10.7554/eLife.15015","quality_controlled":"1","publication":"eLife","issue":"2016JULY","main_file_link":[{"url":"https://doi.org/10.7554/eLife.15015","open_access":"1"}],"status":"public","month":"07","author":[{"last_name":"Jösch","first_name":"Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3937-1330","full_name":"Jösch, Maximilian A"},{"first_name":"David","full_name":"Mankus, David","last_name":"Mankus"},{"first_name":"Masahito","full_name":"Yamagata, Masahito","last_name":"Yamagata"},{"full_name":"Shahbazi, Ali","first_name":"Ali","last_name":"Shahbazi"},{"last_name":"Schalek","first_name":"Richard","full_name":"Schalek, Richard"},{"first_name":"Adi","full_name":"Suissa Peleg, Adi","last_name":"Suissa Peleg"},{"last_name":"Meister","first_name":"Markus","full_name":"Meister, Markus"},{"first_name":"Jeff","full_name":"Lichtman, Jeff","last_name":"Lichtman"},{"last_name":"Scheirer","first_name":"Walter","full_name":"Scheirer, Walter"},{"first_name":"Joshua","full_name":"Sanes, Joshua","last_name":"Sanes"}]},{"citation":{"ama":"Fischer JL, Otto F. A higher-order large scale regularity theory for random elliptic operators. <i>Communications in Partial Differential Equations</i>. 2016;41(7):1108-1148. doi:<a href=\"https://doi.org/10.1080/03605302.2016.1179318\">10.1080/03605302.2016.1179318</a>","ieee":"J. L. Fischer and F. Otto, “A higher-order large scale regularity theory for random elliptic operators,” <i>Communications in Partial Differential Equations</i>, vol. 41, no. 7. Taylor &#38; Francis, pp. 1108–1148, 2016.","chicago":"Fischer, Julian L, and Felix Otto. “A Higher-Order Large Scale Regularity Theory for Random Elliptic Operators.” <i>Communications in Partial Differential Equations</i>. Taylor &#38; Francis, 2016. <a href=\"https://doi.org/10.1080/03605302.2016.1179318\">https://doi.org/10.1080/03605302.2016.1179318</a>.","ista":"Fischer JL, Otto F. 2016. A higher-order large scale regularity theory for random elliptic operators. Communications in Partial Differential Equations. 41(7), 1108–1148.","short":"J.L. Fischer, F. Otto, Communications in Partial Differential Equations 41 (2016) 1108–1148.","apa":"Fischer, J. L., &#38; Otto, F. (2016). A higher-order large scale regularity theory for random elliptic operators. <i>Communications in Partial Differential Equations</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/03605302.2016.1179318\">https://doi.org/10.1080/03605302.2016.1179318</a>","mla":"Fischer, Julian L., and Felix Otto. “A Higher-Order Large Scale Regularity Theory for Random Elliptic Operators.” <i>Communications in Partial Differential Equations</i>, vol. 41, no. 7, Taylor &#38; Francis, 2016, pp. 1108–48, doi:<a href=\"https://doi.org/10.1080/03605302.2016.1179318\">10.1080/03605302.2016.1179318</a>."},"external_id":{"arxiv":["1503.07578"]},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2016-06-16T00:00:00Z","day":"16","article_type":"original","keyword":["Ck","α regularity","higher-ordercorrectors","Liouville principle","random elliptic operator","regularity theory","stochastic homogenization"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1080/03605302.2016.1179318","publication":"Communications in Partial Differential Equations","quality_controlled":"1","status":"public","month":"06","author":[{"id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0479-558X","full_name":"Fischer, Julian L","first_name":"Julian L","last_name":"Fischer"},{"full_name":"Otto, Felix","first_name":"Felix","last_name":"Otto"}],"main_file_link":[{"url":"https://doi.org/10.1080/03605302.2016.1179318","open_access":"1"}],"issue":"7","arxiv":1,"abstract":[{"lang":"eng","text":"We develop a large-scale regularity theory of higher order for divergence-form elliptic equations with heterogeneous coefficient fields a in the context of stochastic homogenization. The large-scale regularity of a-harmonic functions is encoded by Liouville principles: The space of a-harmonic functions that grow at most like a polynomial of degree k has the same dimension as in the constant-coefficient case. This result can be seen as the qualitative side of a large-scale Ck,α-regularity theory, which in the present work is developed in the form of a corresponding Ck,α-“excess decay” estimate: For a given a-harmonic function u on a ball BR, its energy distance on some ball Br to the above space of a-harmonic functions that grow at most like a polynomial of degree k has the natural decay in the radius r above some minimal radius r0. Though motivated by stochastic homogenization, the contribution of this paper is of purely deterministic nature: We work under the assumption that for the given realization a of the coefficient field, the couple (φ, σ) of scalar and vector potentials of the harmonic coordinates, where φ is the usual corrector, grows sublinearly in a mildly quantified way. We then construct “kth-order correctors” and thereby the space of a-harmonic functions that grow at most like a polynomial of degree k, establish the above excess decay, and then the corresponding Liouville principle."}],"volume":41,"page":"1108 - 1148","intvolume":"        41","OA_type":"gold","date_updated":"2026-05-06T07:05:16Z","extern":"1","publist_id":"5953","publisher":"Taylor & Francis","type":"journal_article","year":"2016","language":[{"iso":"eng"}],"oa_version":"Published Version","fulldoi":"https://doi.org/10.1080/03605302.2016.1179318","publication_status":"published","OA_place":"publisher","article_processing_charge":"No","oa":1,"title":"A higher-order large scale regularity theory for random elliptic operators","_id":"1318","publication_identifier":{"eissn":["1532-4133"],"issnl":["0360-5302"]},"date_created":"2018-12-11T11:51:20Z"},{"file":[{"date_created":"2018-12-12T10:16:17Z","file_size":539166,"relation":"main_file","date_updated":"2025-06-25T11:46:36Z","file_name":"IST-2017-810-v1+1_root.pdf","access_level":"open_access","file_id":"5203","checksum":"7219432b43defc62a0d45f48d4ce6a19","content_type":"application/pdf","creator":"system"}],"conference":{"name":"ACC: American Control Conference","end_date":"2016-07-08","location":"Boston, MA, USA","start_date":"2016-07-06"},"date_updated":"2025-06-25T11:46:37Z","OA_type":"green","article_number":"7526722","volume":"2016-July","abstract":[{"lang":"eng","text":"In recent years, several biomolecular systems have been shown to be scale-invariant (SI), i.e. to show the same output dynamics when exposed to geometrically scaled input signals (u → pu, p &gt; 0) after pre-adaptation to accordingly scaled constant inputs. In this article, we show that SI systems-as well as systems invariant with respect to other input transformations-can realize nonlinear differential operators: when excited by inputs obeying functional forms characteristic for a given class of invariant systems, the systems' outputs converge to constant values directly quantifying the speed of the input."}],"pubrep_id":"810","language":[{"iso":"eng"}],"project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","grant_number":"291734"}],"year":"2016","type":"conference","publisher":"IEEE","publist_id":"5950","oa":1,"article_processing_charge":"No","OA_place":"repository","publication_status":"published","fulldoi":"https://doi.org/10.1109/ACC.2016.7526722","oa_version":"Submitted Version","date_created":"2018-12-11T11:51:21Z","_id":"1320","title":"Scale-invariant systems realize nonlinear differential operators","department":[{"_id":"CaGu"},{"_id":"GaTk"}],"scopus_import":"1","ec_funded":1,"citation":{"chicago":"Lang, Moritz, and Eduardo Sontag. “Scale-Invariant Systems Realize Nonlinear Differential Operators,” Vol. 2016–July. IEEE, 2016. <a href=\"https://doi.org/10.1109/ACC.2016.7526722\">https://doi.org/10.1109/ACC.2016.7526722</a>.","short":"M. Lang, E. Sontag, in:, IEEE, 2016.","ista":"Lang M, Sontag E. 2016. Scale-invariant systems realize nonlinear differential operators. ACC: American Control Conference vol. 2016–July, 7526722.","apa":"Lang, M., &#38; Sontag, E. (2016). Scale-invariant systems realize nonlinear differential operators (Vol. 2016–July). Presented at the ACC: American Control Conference, Boston, MA, USA: IEEE. <a href=\"https://doi.org/10.1109/ACC.2016.7526722\">https://doi.org/10.1109/ACC.2016.7526722</a>","mla":"Lang, Moritz, and Eduardo Sontag. <i>Scale-Invariant Systems Realize Nonlinear Differential Operators</i>. Vol. 2016–July, 7526722, IEEE, 2016, doi:<a href=\"https://doi.org/10.1109/ACC.2016.7526722\">10.1109/ACC.2016.7526722</a>.","ama":"Lang M, Sontag E. Scale-invariant systems realize nonlinear differential operators. In: Vol 2016-July. IEEE; 2016. doi:<a href=\"https://doi.org/10.1109/ACC.2016.7526722\">10.1109/ACC.2016.7526722</a>","ieee":"M. Lang and E. Sontag, “Scale-invariant systems realize nonlinear differential operators,” presented at the ACC: American Control Conference, Boston, MA, USA, 2016, vol. 2016–July."},"has_accepted_license":"1","file_date_updated":"2025-06-25T11:46:36Z","acknowledgement":"The research leading to these results has received funding from the People Programme (Marie Curie Actions) of the European Union's Seventh Framework Programme (FP7/2007-2013) under REA grant agreement n° [291734]. Work supported in part by grants AFOSR FA9550-14-1-0060 and NIH 1R01GM100473.","date_published":"2016-07-28T00:00:00Z","doi":"10.1109/ACC.2016.7526722","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"28","author":[{"id":"29E0800A-F248-11E8-B48F-1D18A9856A87","full_name":"Lang, Moritz","first_name":"Moritz","last_name":"Lang"},{"full_name":"Sontag, Eduardo","first_name":"Eduardo","last_name":"Sontag"}],"ddc":["003","621"],"status":"public","month":"07","quality_controlled":"1"},{"article_processing_charge":"No","oa":1,"fulldoi":"https://doi.org/10.1371/journal.pone.0163867","oa_version":"Published Version","publication_status":"published","date_created":"2018-12-11T11:51:22Z","department":[{"_id":"KrCh"}],"_id":"1322","title":"Asymmetric power boosts extortion in an economic experiment","intvolume":"        11","date_updated":"2025-09-22T08:27:01Z","file":[{"file_id":"4668","checksum":"6b33e394003dfe8b4ca6be1858aaa8e3","content_type":"application/pdf","creator":"system","relation":"main_file","date_updated":"2020-07-14T12:44:44Z","access_level":"open_access","file_name":"IST-2016-716-v1+1_journal.pone.0163867.PDF","date_created":"2018-12-12T10:08:08Z","file_size":2077905}],"abstract":[{"lang":"eng","text":"Direct reciprocity is a major mechanism for the evolution of cooperation. Several classical studies have suggested that humans should quickly learn to adopt reciprocal strategies to establish mutual cooperation in repeated interactions. On the other hand, the recently discovered theory of ZD strategies has found that subjects who use extortionate strategies are able to exploit and subdue cooperators. Although such extortioners have been predicted to succeed in any population of adaptive opponents, theoretical follow-up studies questioned whether extortion can evolve in reality. However, most of these studies presumed that individuals have similar strategic possibilities and comparable outside options, whereas asymmetries are ubiquitous in real world applications. Here we show with a model and an economic experiment that extortionate strategies readily emerge once subjects differ in their strategic power. Our experiment combines a repeated social dilemma with asymmetric partner choice. In our main treatment there is one randomly chosen group member who is unilaterally allowed to exchange one of the other group members after every ten rounds of the social dilemma. We find that this asymmetric replacement opportunity generally promotes cooperation, but often the resulting payoff distribution reflects the underlying power structure. Almost half of the subjects in a better strategic position turn into extortioners, who quickly proceed to exploit their peers. By adapting their cooperation probabilities consistent with ZD theory, extortioners force their co-players to cooperate without being similarly cooperative themselves. Comparison to non-extortionate players under the same conditions indicates a substantial net gain to extortion. Our results thus highlight how power asymmetries can endanger mutually beneficial interactions, and transform them into exploitative relationships. In particular, our results indicate that the extortionate strategies predicted from ZD theory could play a more prominent role in our daily interactions than previously thought."}],"pubrep_id":"716","article_number":"e0163867","volume":11,"type":"journal_article","publisher":"Public Library of Science","language":[{"iso":"eng"}],"year":"2016","publist_id":"5948","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1371/journal.pone.0163867","day":"04","author":[{"last_name":"Hilbe","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5116-955X","full_name":"Hilbe, Christian","first_name":"Christian"},{"first_name":"Kristin","full_name":"Hagel, Kristin","last_name":"Hagel"},{"first_name":"Manfred","full_name":"Milinski, Manfred","last_name":"Milinski"}],"status":"public","isi":1,"month":"10","ddc":["004","006"],"issue":"10","publication":"PLoS One","related_material":{"record":[{"relation":"research_data","status":"public","id":"9867"},{"id":"9868","status":"public","relation":"research_data"}]},"quality_controlled":"1","scopus_import":"1","citation":{"apa":"Hilbe, C., Hagel, K., &#38; Milinski, M. (2016). Asymmetric power boosts extortion in an economic experiment. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0163867\">https://doi.org/10.1371/journal.pone.0163867</a>","short":"C. Hilbe, K. Hagel, M. Milinski, PLoS One 11 (2016).","ista":"Hilbe C, Hagel K, Milinski M. 2016. Asymmetric power boosts extortion in an economic experiment. PLoS One. 11(10), e0163867.","mla":"Hilbe, Christian, et al. “Asymmetric Power Boosts Extortion in an Economic Experiment.” <i>PLoS One</i>, vol. 11, no. 10, e0163867, Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0163867\">10.1371/journal.pone.0163867</a>.","chicago":"Hilbe, Christian, Kristin Hagel, and Manfred Milinski. “Asymmetric Power Boosts Extortion in an Economic Experiment.” <i>PLoS One</i>. Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0163867\">https://doi.org/10.1371/journal.pone.0163867</a>.","ama":"Hilbe C, Hagel K, Milinski M. Asymmetric power boosts extortion in an economic experiment. <i>PLoS One</i>. 2016;11(10). doi:<a href=\"https://doi.org/10.1371/journal.pone.0163867\">10.1371/journal.pone.0163867</a>","ieee":"C. Hilbe, K. Hagel, and M. Milinski, “Asymmetric power boosts extortion in an economic experiment,” <i>PLoS One</i>, vol. 11, no. 10. Public Library of Science, 2016."},"date_published":"2016-10-04T00:00:00Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"file_date_updated":"2020-07-14T12:44:44Z","acknowledgement":"CH was funded by the Schrödinger program of the Austrian Science Fund (FWF) J3475. ","has_accepted_license":"1","corr_author":"1","external_id":{"isi":["000385696900024"]}},{"volume":5,"article_number":"e17977","abstract":[{"text":"Mossy fiber synapses on CA3 pyramidal cells are 'conditional detonators' that reliably discharge postsynaptic targets. The 'conditional' nature implies that burst activity in dentate gyrus granule cells is required for detonation. Whether single unitary excitatory postsynaptic potentials (EPSPs) trigger spikes in CA3 neurons remains unknown. Mossy fiber synapses exhibit both pronounced short-term facilitation and uniquely large post-tetanic potentiation (PTP). We tested whether PTP could convert mossy fiber synapses from subdetonator into detonator mode, using a recently developed method to selectively and noninvasively stimulate individual presynaptic terminals in rat brain slices. Unitary EPSPs failed to initiate a spike in CA3 neurons under control conditions, but reliably discharged them after induction of presynaptic short-term plasticity. Remarkably, PTP switched mossy fiber synapses into full detonators for tens of seconds. Plasticity-dependent detonation may be critical for efficient coding, storage, and recall of information in the granule cell–CA3 cell network.","lang":"eng"}],"pubrep_id":"715","file":[{"date_created":"2018-12-12T10:17:05Z","file_size":1477891,"relation":"main_file","date_updated":"2020-07-14T12:44:44Z","access_level":"open_access","file_name":"IST-2016-715-v1+1_e17977-download.pdf","file_id":"5257","checksum":"a7201280c571bed88ebd459ce5ce6a47","content_type":"application/pdf","creator":"system"}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"PreCl"}],"date_updated":"2025-09-22T08:26:29Z","intvolume":"         5","publist_id":"5947","project":[{"call_identifier":"FP7","_id":"25C0F108-B435-11E9-9278-68D0E5697425","name":"Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons","grant_number":"268548"},{"call_identifier":"H2020","name":"Biophysics and circuit function of a giant cortical glutamatergic synapse","_id":"25B7EB9E-B435-11E9-9278-68D0E5697425","grant_number":"692692"}],"year":"2016","language":[{"iso":"eng"}],"publisher":"eLife Sciences Publications","type":"journal_article","publication_status":"published","oa_version":"Published Version","fulldoi":"https://doi.org/10.7554/eLife.17977","oa":1,"article_processing_charge":"No","title":"Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses","_id":"1323","department":[{"_id":"PeJo"}],"date_created":"2018-12-11T11:51:22Z","citation":{"apa":"Vyleta, N., Borges Merjane, C., &#38; Jonas, P. M. (2016). Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.17977\">https://doi.org/10.7554/eLife.17977</a>","short":"N. Vyleta, C. Borges Merjane, P.M. Jonas, ELife 5 (2016).","ista":"Vyleta N, Borges Merjane C, Jonas PM. 2016. Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. eLife. 5, e17977.","mla":"Vyleta, Nicholas, et al. “Plasticity-Dependent, Full Detonation at Hippocampal Mossy Fiber–CA3 Pyramidal Neuron Synapses.” <i>ELife</i>, vol. 5, e17977, eLife Sciences Publications, 2016, doi:<a href=\"https://doi.org/10.7554/eLife.17977\">10.7554/eLife.17977</a>.","chicago":"Vyleta, Nicholas, Carolina Borges Merjane, and Peter M Jonas. “Plasticity-Dependent, Full Detonation at Hippocampal Mossy Fiber–CA3 Pyramidal Neuron Synapses.” <i>ELife</i>. eLife Sciences Publications, 2016. <a href=\"https://doi.org/10.7554/eLife.17977\">https://doi.org/10.7554/eLife.17977</a>.","ieee":"N. Vyleta, C. Borges Merjane, and P. M. Jonas, “Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses,” <i>eLife</i>, vol. 5. eLife Sciences Publications, 2016.","ama":"Vyleta N, Borges Merjane C, Jonas PM. Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. <i>eLife</i>. 2016;5. doi:<a href=\"https://doi.org/10.7554/eLife.17977\">10.7554/eLife.17977</a>"},"scopus_import":"1","ec_funded":1,"external_id":{"isi":["000387034600001"]},"corr_author":"1","file_date_updated":"2020-07-14T12:44:44Z","has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2016-10-25T00:00:00Z","day":"25","doi":"10.7554/eLife.17977","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","quality_controlled":"1","publication":"eLife","isi":1,"status":"public","ddc":["571","572"],"month":"10","author":[{"first_name":"Nicholas","full_name":"Vyleta, Nicholas","id":"36C4978E-F248-11E8-B48F-1D18A9856A87","last_name":"Vyleta"},{"id":"4305C450-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0005-401X","full_name":"Borges Merjane, Carolina","first_name":"Carolina","last_name":"Borges Merjane"},{"first_name":"Peter M","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","full_name":"Jonas, Peter M","orcid":"0000-0001-5001-4804","last_name":"Jonas"}]},{"department":[{"_id":"KrCh"}],"title":"Indefinite-horizon reachability in Goal-DEC-POMDPs","_id":"1324","date_created":"2018-12-11T11:51:22Z","oa_version":"None","fulldoi":"https://doi.org/10.1609/icaps.v26i1.13737","publication_status":"published","article_processing_charge":"No","oa":1,"publist_id":"5946","publisher":"AAAI Press","type":"conference","year":"2016","project":[{"grant_number":"P 23499-N23","call_identifier":"FWF","name":"Modern Graph Algorithmic Techniques in Formal Verification","_id":"2584A770-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307"},{"grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering","call_identifier":"FWF"}],"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"DEC-POMDPs extend POMDPs to a multi-agent setting, where several agents operate in an uncertain environment independently to achieve a joint objective. DEC-POMDPs have been studied with finite-horizon and infinite-horizon discounted-sum objectives, and there exist solvers both for exact and approximate solutions. In this work we consider Goal-DEC-POMDPs, where given a set of target states, the objective is to ensure that the target set is reached with minimal cost. We consider the indefinite-horizon (infinite-horizon with either discounted-sum, or undiscounted-sum, where absorbing goal states have zero-cost) problem. We present a new and novel method to solve the problem that extends methods for finite-horizon DEC-POMDPs and the RTDP-Bel approach for POMDPs. We present experimental results on several examples, and show that our approach presents promising results. Copyright "}],"volume":2016,"page":"88 - 96","intvolume":"      2016","date_updated":"2025-05-19T11:03:49Z","conference":{"name":"ICAPS: International Conference on Automated Planning and Scheduling","location":"London, United Kingdom","start_date":"2016-06-12","end_date":"2016-06-17"},"publication":"Proceedings of the Twenty-Sixth International Conference on Automated Planning and Scheduling","quality_controlled":"1","month":"01","status":"public","author":[{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","last_name":"Chatterjee"},{"last_name":"Chmelik","first_name":"Martin","full_name":"Chmelik, Martin","id":"3624234E-F248-11E8-B48F-1D18A9856A87"}],"main_file_link":[{"url":"http://www.aaai.org/ocs/index.php/ICAPS/ICAPS16/paper/view/12999","open_access":"1"}],"day":"01","doi":"10.1609/icaps.v26i1.13737","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","date_published":"2016-01-01T00:00:00Z","citation":{"chicago":"Chatterjee, Krishnendu, and Martin Chmelik. “Indefinite-Horizon Reachability in Goal-DEC-POMDPs.” In <i>Proceedings of the Twenty-Sixth International Conference on Automated Planning and Scheduling</i>, 2016:88–96. AAAI Press, 2016. <a href=\"https://doi.org/10.1609/icaps.v26i1.13737\">https://doi.org/10.1609/icaps.v26i1.13737</a>.","mla":"Chatterjee, Krishnendu, and Martin Chmelik. “Indefinite-Horizon Reachability in Goal-DEC-POMDPs.” <i>Proceedings of the Twenty-Sixth International Conference on Automated Planning and Scheduling</i>, vol. 2016, AAAI Press, 2016, pp. 88–96, doi:<a href=\"https://doi.org/10.1609/icaps.v26i1.13737\">10.1609/icaps.v26i1.13737</a>.","apa":"Chatterjee, K., &#38; Chmelik, M. (2016). Indefinite-horizon reachability in Goal-DEC-POMDPs. In <i>Proceedings of the Twenty-Sixth International Conference on Automated Planning and Scheduling</i> (Vol. 2016, pp. 88–96). London, United Kingdom: AAAI Press. <a href=\"https://doi.org/10.1609/icaps.v26i1.13737\">https://doi.org/10.1609/icaps.v26i1.13737</a>","short":"K. Chatterjee, M. Chmelik, in:, Proceedings of the Twenty-Sixth International Conference on Automated Planning and Scheduling, AAAI Press, 2016, pp. 88–96.","ista":"Chatterjee K, Chmelik M. 2016. Indefinite-horizon reachability in Goal-DEC-POMDPs. Proceedings of the Twenty-Sixth International Conference on Automated Planning and Scheduling. ICAPS: International Conference on Automated Planning and Scheduling vol. 2016, 88–96.","ieee":"K. Chatterjee and M. Chmelik, “Indefinite-horizon reachability in Goal-DEC-POMDPs,” in <i>Proceedings of the Twenty-Sixth International Conference on Automated Planning and Scheduling</i>, London, United Kingdom, 2016, vol. 2016, pp. 88–96.","ama":"Chatterjee K, Chmelik M. Indefinite-horizon reachability in Goal-DEC-POMDPs. In: <i>Proceedings of the Twenty-Sixth International Conference on Automated Planning and Scheduling</i>. Vol 2016. AAAI Press; 2016:88-96. doi:<a href=\"https://doi.org/10.1609/icaps.v26i1.13737\">10.1609/icaps.v26i1.13737</a>"},"ec_funded":1,"scopus_import":"1"}]