---
_id: '10693'
abstract:
- lang: eng
  text: High quality graphene heterostructures host an array of fractional quantum
    Hall isospin ferromagnets with diverse spin and valley orders. While a variety
    of phase transitions have been observed, disentangling the isospin phase diagram
    of these states is hampered by the absence of direct probes of spin and valley
    order. I will describe nonlocal transport measurements based on launching spin
    waves from a gate defined lateral heterojunction, performed in ultra-clean Corbino
    geometry graphene devices. At high magnetic fields, we find that the spin-wave
    transport signal is detected in all FQH states between ν = 0 and 1; however, between
    ν = 1 and 2 only odd numerator FQH states show finite nonlocal transport, despite
    the identical ground state spin polarizations in odd- and even numerator states.
    The results reveal that the neutral spin-waves are both spin and sublattice polarized
    making them a sensitive probe of ground state sublattice structure. Armed with
    this understanding, we use nonlocal transport signal to a magnetic field tuned
    isospin phase transition, showing that the emergent even denominator state at
    ν = 1/2 in monolayer graphene is indeed a multicomponent state featuring equal
    populations on each sublattice.
alternative_title:
- Bulletin of the American Physical Society
article_number: B54. 00007
article_processing_charge: No
author:
- first_name: Haoxin
  full_name: Zhou, Haoxin
  last_name: Zhou
- first_name: Hryhoriy
  full_name: Polshyn, Hryhoriy
  id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
  last_name: Polshyn
  orcid: 0000-0001-8223-8896
- first_name: Takashi
  full_name: Tanaguchi, Takashi
  last_name: Tanaguchi
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Andrea
  full_name: Young, Andrea
  last_name: Young
citation:
  ama: 'Zhou H, Polshyn H, Tanaguchi T, Watanabe K, Young A. Sublattice resolved spin
    wave transport through graphene fractional quantum Hall states as a probe of isospin
    order. In: <i>APS March Meeting 2020</i>. Vol 65. American Physical Society; 2020.'
  apa: 'Zhou, H., Polshyn, H., Tanaguchi, T., Watanabe, K., &#38; Young, A. (2020).
    Sublattice resolved spin wave transport through graphene fractional quantum Hall
    states as a probe of isospin order. In <i>APS March Meeting 2020</i> (Vol. 65).
    Denver, CO, United States: American Physical Society.'
  chicago: Zhou, Haoxin, Hryhoriy Polshyn, Takashi Tanaguchi, Kenji Watanabe, and
    Andrea Young. “Sublattice Resolved Spin Wave Transport through Graphene Fractional
    Quantum Hall States as a Probe of Isospin Order.” In <i>APS March Meeting 2020</i>,
    Vol. 65. American Physical Society, 2020.
  ieee: H. Zhou, H. Polshyn, T. Tanaguchi, K. Watanabe, and A. Young, “Sublattice
    resolved spin wave transport through graphene fractional quantum Hall states as
    a probe of isospin order,” in <i>APS March Meeting 2020</i>, Denver, CO, United
    States, 2020, vol. 65, no. 1.
  ista: 'Zhou H, Polshyn H, Tanaguchi T, Watanabe K, Young A. 2020. Sublattice resolved
    spin wave transport through graphene fractional quantum Hall states as a probe
    of isospin order. APS March Meeting 2020. APS: American Physical Society, Bulletin
    of the American Physical Society, vol. 65, B54. 00007.'
  mla: Zhou, Haoxin, et al. “Sublattice Resolved Spin Wave Transport through Graphene
    Fractional Quantum Hall States as a Probe of Isospin Order.” <i>APS March Meeting
    2020</i>, vol. 65, no. 1, B54. 00007, American Physical Society, 2020.
  short: H. Zhou, H. Polshyn, T. Tanaguchi, K. Watanabe, A. Young, in:, APS March
    Meeting 2020, American Physical Society, 2020.
conference:
  end_date: 2020-03-06
  location: Denver, CO, United States
  name: 'APS: American Physical Society'
  start_date: 2020-03-02
date_created: 2022-01-27T10:50:10Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2022-01-27T10:58:38Z
day: '01'
extern: '1'
intvolume: '        65'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://meetings.aps.org/Meeting/MAR20/Session/B54.7
month: '03'
oa: 1
oa_version: Published Version
publication: APS March Meeting 2020
publication_identifier:
  issn:
  - 0003-0503
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Sublattice resolved spin wave transport through graphene fractional quantum
  Hall states as a probe of isospin order
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 65
year: '2020'
...
---
_id: '10696'
abstract:
- lang: eng
  text: We experimentally investigate twisted van der Waals heterostructures of monolayer
    graphene rotated with respect to a bernal stacked graphene bilayer. We report
    transport measurements for devices with twist angles between 0.9 and 1.4°. The
    electric field allows efficient tuning of the width, isolation and the topology
    of the moiré bands in this system. By comparing magnetoresistance measurements
    to numerical simulations, we develop an understanding of the band structure. Finally,
    we observe correlated states at half- and quarter-fillings, which arise when narrow
    moire sublattice band is isolated by energy gaps from dispersive bands. We investigate
    the effects of in-plane and out-of-plane magnetic field on these states and discuss
    the implication for their spin- and valley- polarization.
alternative_title:
- Bulletin of the American Physical Society
article_number: B51.00005
article_processing_charge: No
author:
- first_name: Hryhoriy
  full_name: Polshyn, Hryhoriy
  id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
  last_name: Polshyn
  orcid: 0000-0001-8223-8896
- first_name: Jihang
  full_name: Zhu, Jihang
  last_name: Zhu
- first_name: Manish
  full_name: Kumar, Manish
  last_name: Kumar
- first_name: Takashi
  full_name: Taniguchi, Takashi
  last_name: Taniguchi
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Allan
  full_name: MacDonald, Allan
  last_name: MacDonald
- first_name: Andrea
  full_name: Young, Andrea
  last_name: Young
citation:
  ama: 'Polshyn H, Zhu J, Kumar M, et al. Correlated states and tunable topological
    bands in twisted monolayer-bilayer graphene heterostructures. In: <i>APS March
    Meeting 2020</i>. Vol 65. American Physical Society; 2020.'
  apa: 'Polshyn, H., Zhu, J., Kumar, M., Taniguchi, T., Watanabe, K., MacDonald, A.,
    &#38; Young, A. (2020). Correlated states and tunable topological bands in twisted
    monolayer-bilayer graphene heterostructures. In <i>APS March Meeting 2020</i>
    (Vol. 65). Denver, CO, United States: American Physical Society.'
  chicago: Polshyn, Hryhoriy, Jihang Zhu, Manish Kumar, Takashi Taniguchi, Kenji Watanabe,
    Allan MacDonald, and Andrea Young. “Correlated States and Tunable Topological
    Bands in Twisted Monolayer-Bilayer Graphene Heterostructures.” In <i>APS March
    Meeting 2020</i>, Vol. 65. American Physical Society, 2020.
  ieee: H. Polshyn <i>et al.</i>, “Correlated states and tunable topological bands
    in twisted monolayer-bilayer graphene heterostructures,” in <i>APS March Meeting
    2020</i>, Denver, CO, United States, 2020, vol. 65, no. 1.
  ista: 'Polshyn H, Zhu J, Kumar M, Taniguchi T, Watanabe K, MacDonald A, Young A.
    2020. Correlated states and tunable topological bands in twisted monolayer-bilayer
    graphene heterostructures. APS March Meeting 2020. APS: American Physical Society,
    Bulletin of the American Physical Society, vol. 65, B51.00005.'
  mla: Polshyn, Hryhoriy, et al. “Correlated States and Tunable Topological Bands
    in Twisted Monolayer-Bilayer Graphene Heterostructures.” <i>APS March Meeting
    2020</i>, vol. 65, no. 1, B51.00005, American Physical Society, 2020.
  short: H. Polshyn, J. Zhu, M. Kumar, T. Taniguchi, K. Watanabe, A. MacDonald, A.
    Young, in:, APS March Meeting 2020, American Physical Society, 2020.
conference:
  end_date: 2020-03-06
  location: Denver, CO, United States
  name: 'APS: American Physical Society'
  start_date: 2020-03-02
date_created: 2022-01-28T10:09:19Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2022-02-08T10:22:08Z
day: '01'
extern: '1'
intvolume: '        65'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://meetings.aps.org/Meeting/MAR20/Session/B51.5
month: '03'
oa: 1
oa_version: Published Version
publication: APS March Meeting 2020
publication_identifier:
  issn:
  - 0003-0503
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Correlated states and tunable topological bands in twisted monolayer-bilayer
  graphene heterostructures
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 65
year: '2020'
...
---
_id: '10697'
abstract:
- lang: eng
  text: We report the observation of a quantized anomalous Hall effect in a moiré
    heterostructure consisting of twisted bilayer graphene aligned to an encapsulating
    hBN substrate. The effect occurs at a density of 3 electrons per superlattice
    unit cell, where we observe magnetic hysteresis and a Hall resistance quantized
    to within 0.1% of the resistance quantum at temperatures as high as 3K. In this
    first of 3 talks, I will describe the fabrication procedure for our device as
    well as basic transport characterization measurements. I will introduce the phenomenology
    of twisted bilayer graphene and present evidence for hBN alignment as manifested
    in the hierarchy of symmetry-breaking gaps and anomalous magnetoresistance.
acknowledgement: I would like to thank the MURI program, Sloan foundation, AFOSR,
  and ARO for their generous support of this work.
alternative_title:
- Bulletin of the American Physical Society
article_number: B59.00012
article_processing_charge: No
arxiv: 1
author:
- first_name: Yuxuan
  full_name: Zhang, Yuxuan
  last_name: Zhang
- first_name: Marec
  full_name: Serlin, Marec
  last_name: Serlin
- first_name: Charles
  full_name: Tschirhart, Charles
  last_name: Tschirhart
- first_name: Hryhoriy
  full_name: Polshyn, Hryhoriy
  id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
  last_name: Polshyn
  orcid: 0000-0001-8223-8896
- first_name: Jiacheng
  full_name: Zhu, Jiacheng
  last_name: Zhu
- first_name: Leon
  full_name: Balents, Leon
  last_name: Balents
- first_name: Martin E.
  full_name: Huber, Martin E.
  last_name: Huber
- first_name: Takashi
  full_name: Taniguchi, Takashi
  last_name: Taniguchi
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Andrea
  full_name: Young, Andrea
  last_name: Young
citation:
  ama: 'Zhang Y, Serlin M, Tschirhart C, et al. Intrinsic quantized anomalous Hall
    effect in a moiré heterostructure, part I: Device fabrication and transport. In:
    <i>APS March Meeting 2020</i>. Vol 65. American Physical Society; 2020.'
  apa: 'Zhang, Y., Serlin, M., Tschirhart, C., Polshyn, H., Zhu, J., Balents, L.,
    … Young, A. (2020). Intrinsic quantized anomalous Hall effect in a moiré heterostructure,
    part I: Device fabrication and transport. In <i>APS March Meeting 2020</i> (Vol.
    65). Denver, CO, United States: American Physical Society.'
  chicago: 'Zhang, Yuxuan, Marec Serlin, Charles Tschirhart, Hryhoriy Polshyn, Jiacheng
    Zhu, Leon Balents, Martin E. Huber, Takashi Taniguchi, Kenji Watanabe, and Andrea
    Young. “Intrinsic Quantized Anomalous Hall Effect in a Moiré Heterostructure,
    Part I: Device Fabrication and Transport.” In <i>APS March Meeting 2020</i>, Vol.
    65. American Physical Society, 2020.'
  ieee: 'Y. Zhang <i>et al.</i>, “Intrinsic quantized anomalous Hall effect in a moiré
    heterostructure, part I: Device fabrication and transport,” in <i>APS March Meeting
    2020</i>, Denver, CO, United States, 2020, vol. 65, no. 1.'
  ista: 'Zhang Y, Serlin M, Tschirhart C, Polshyn H, Zhu J, Balents L, Huber ME, Taniguchi
    T, Watanabe K, Young A. 2020. Intrinsic quantized anomalous Hall effect in a moiré
    heterostructure, part I: Device fabrication and transport. APS March Meeting 2020.
    APS: American Physical Society, Bulletin of the American Physical Society, vol.
    65, B59.00012.'
  mla: 'Zhang, Yuxuan, et al. “Intrinsic Quantized Anomalous Hall Effect in a Moiré
    Heterostructure, Part I: Device Fabrication and Transport.” <i>APS March Meeting
    2020</i>, vol. 65, no. 1, B59.00012, American Physical Society, 2020.'
  short: Y. Zhang, M. Serlin, C. Tschirhart, H. Polshyn, J. Zhu, L. Balents, M.E.
    Huber, T. Taniguchi, K. Watanabe, A. Young, in:, APS March Meeting 2020, American
    Physical Society, 2020.
conference:
  end_date: 2020-03-06
  location: Denver, CO, United States
  name: 'APS: American Physical Society'
  start_date: 2020-03-02
date_created: 2022-01-28T10:28:35Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-02-21T15:57:52Z
day: '01'
extern: '1'
external_id:
  arxiv:
  - '1907.00261'
intvolume: '        65'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://meetings.aps.org/Meeting/MAR20/Session/B59.12
month: '03'
oa: 1
oa_version: Published Version
publication: APS March Meeting 2020
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '10619'
    relation: other
    status: public
status: public
title: 'Intrinsic quantized anomalous Hall effect in a moiré heterostructure, part
  I: Device fabrication and transport'
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 65
year: '2020'
...
---
_id: '10698'
abstract:
- lang: eng
  text: This is the second of three talks describing the observation and characterization
    of a ferromagnetic moiré heterostructure based on twisted bilayer graphene aligned
    to hexagonal boron nitride. I will compare the qualitative and quantitative features
    of this observed quantum anomalous Hall state to traditional systems engineered
    from thin film (Bi,Sb)2Te3 topological insulators. In particular, we find that
    the measured electronic energy gap of ~30K is several times higher than the Curie
    temperature, consistent with a lack of disorder associated with magnetic dopants.
    In this system, the quantization arises from spontaneous ferromagnetic polarization
    into a single spin and valley moiré subband, which is topological despite the
    lack of spin orbit coupling. I will also discuss the observation of current induced
    switching, which allows the magnetic state of the heterostructure to be controllably
    reversed with currents as small as a few nanoamperes.
acknowledgement: I would like to thank the MURI Program, AFOSR, Sloan Foundation,
  and the ARO for their generous support of this work.
alternative_title:
- Bulletin of the American Physical Society
article_number: B59.00011
article_processing_charge: No
arxiv: 1
author:
- first_name: Marec
  full_name: Serlin, Marec
  last_name: Serlin
- first_name: Charles
  full_name: Tschirhart, Charles
  last_name: Tschirhart
- first_name: Hryhoriy
  full_name: Polshyn, Hryhoriy
  id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
  last_name: Polshyn
  orcid: 0000-0001-8223-8896
- first_name: Yuxuan
  full_name: Zhang, Yuxuan
  last_name: Zhang
- first_name: Jiacheng
  full_name: Zhu, Jiacheng
  last_name: Zhu
- first_name: Martin E.
  full_name: Huber, Martin E.
  last_name: Huber
- first_name: Leon
  full_name: Balents, Leon
  last_name: Balents
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Takashi
  full_name: Tanaguchi, Takashi
  last_name: Tanaguchi
- first_name: Andrea
  full_name: Young, Andrea
  last_name: Young
citation:
  ama: 'Serlin M, Tschirhart C, Polshyn H, et al. Intrinsic quantized anomalous Hall
    effect in a moiré heterostructure, part II: Temperature dependence and current
    switching. In: <i>APS March Meeting 2020</i>. Vol 65. American Physical Society;
    2020.'
  apa: 'Serlin, M., Tschirhart, C., Polshyn, H., Zhang, Y., Zhu, J., Huber, M. E.,
    … Young, A. (2020). Intrinsic quantized anomalous Hall effect in a moiré heterostructure,
    part II: Temperature dependence and current switching. In <i>APS March Meeting
    2020</i> (Vol. 65). Denver, CO, United States: American Physical Society.'
  chicago: 'Serlin, Marec, Charles Tschirhart, Hryhoriy Polshyn, Yuxuan Zhang, Jiacheng
    Zhu, Martin E. Huber, Leon Balents, Kenji Watanabe, Takashi Tanaguchi, and Andrea
    Young. “Intrinsic Quantized Anomalous Hall Effect in a Moiré Heterostructure,
    Part II: Temperature Dependence and Current Switching.” In <i>APS March Meeting
    2020</i>, Vol. 65. American Physical Society, 2020.'
  ieee: 'M. Serlin <i>et al.</i>, “Intrinsic quantized anomalous Hall effect in a
    moiré heterostructure, part II: Temperature dependence and current switching,”
    in <i>APS March Meeting 2020</i>, Denver, CO, United States, 2020, vol. 65, no.
    1.'
  ista: 'Serlin M, Tschirhart C, Polshyn H, Zhang Y, Zhu J, Huber ME, Balents L, Watanabe
    K, Tanaguchi T, Young A. 2020. Intrinsic quantized anomalous Hall effect in a
    moiré heterostructure, part II: Temperature dependence and current switching.
    APS March Meeting 2020. APS: American Physical Society, Bulletin of the American
    Physical Society, vol. 65, B59.00011.'
  mla: 'Serlin, Marec, et al. “Intrinsic Quantized Anomalous Hall Effect in a Moiré
    Heterostructure, Part II: Temperature Dependence and Current Switching.” <i>APS
    March Meeting 2020</i>, vol. 65, no. 1, B59.00011, American Physical Society,
    2020.'
  short: M. Serlin, C. Tschirhart, H. Polshyn, Y. Zhang, J. Zhu, M.E. Huber, L. Balents,
    K. Watanabe, T. Tanaguchi, A. Young, in:, APS March Meeting 2020, American Physical
    Society, 2020.
conference:
  end_date: 2020-03-06
  location: Denver, CO, United States
  name: 'APS: American Physical Society'
  start_date: 2020-03-02
date_created: 2022-01-28T10:46:57Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-02-21T15:57:52Z
day: '01'
extern: '1'
external_id:
  arxiv:
  - '1907.00261'
intvolume: '        65'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://meetings.aps.org/Meeting/MAR20/Session/B59.11
month: '03'
oa: 1
oa_version: Published Version
publication: APS March Meeting 2020
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '10619'
    relation: other
    status: public
status: public
title: 'Intrinsic quantized anomalous Hall effect in a moiré heterostructure, part
  II: Temperature dependence and current switching'
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 65
year: '2020'
...
---
_id: '10699'
abstract:
- lang: eng
  text: This is the third of three talks describing the observation and characterization
    of a ferromagnetic moiré heterostructure based on twisted bilayer graphene aligned
    to hexagonal boron nitride. In this segment I will present scanning probe magnetometry
    data acquired using a nanoSQUID-on-tip microscope, which provides ~150 nm spatial
    resolution and a field sensitivity of ~10 nT/rtHz. We study the distribution of
    magnetic domains within the device as a function of density, magnetic field training,
    and DC current. Our data allow us to constrain the magnitude of the orbital magnetic
    moment of the electrons in the QAH state. Comparison with simultaneously acquired
    transport data allows us to precisely correlate single domain dynamics with discrete
    jumps in the observed anomalous Hall signal.
acknowledgement: I would like to thank the MURI program, Sloan foundation, AFOSR,
  and ARO for their generous support of this work. I would also like to thank the
  NSF GRFP and the Hertz foundation for their generous support of my graduate studies.
alternative_title:
- Bulletin of the American Physical Society
article_number: B59.00013
article_processing_charge: No
arxiv: 1
author:
- first_name: Charles
  full_name: Tschirhart, Charles
  last_name: Tschirhart
- first_name: Marec
  full_name: Serlin, Marec
  last_name: Serlin
- first_name: Hryhoriy
  full_name: Polshyn, Hryhoriy
  id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
  last_name: Polshyn
  orcid: 0000-0001-8223-8896
- first_name: Yuxuan
  full_name: Zhang, Yuxuan
  last_name: Zhang
- first_name: Jiacheng
  full_name: Zhu, Jiacheng
  last_name: Zhu
- first_name: Leon
  full_name: Balents, Leon
  last_name: Balents
- first_name: Martin E.
  full_name: Huber, Martin E.
  last_name: Huber
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Takashi
  full_name: Tanaguchi, Takashi
  last_name: Tanaguchi
- first_name: Andrea
  full_name: Young, Andrea
  last_name: Young
citation:
  ama: 'Tschirhart C, Serlin M, Polshyn H, et al. Intrinsic quantized anomalous Hall
    effect in a moiré heterostructure, part III: Scanning probe magnetometry. In:
    <i>APS March Meeting 2020</i>. Vol 65. American Physical Society; 2020.'
  apa: 'Tschirhart, C., Serlin, M., Polshyn, H., Zhang, Y., Zhu, J., Balents, L.,
    … Young, A. (2020). Intrinsic quantized anomalous Hall effect in a moiré heterostructure,
    part III: Scanning probe magnetometry. In <i>APS March Meeting 2020</i> (Vol.
    65). Denver, CO, United States: American Physical Society.'
  chicago: 'Tschirhart, Charles, Marec Serlin, Hryhoriy Polshyn, Yuxuan Zhang, Jiacheng
    Zhu, Leon Balents, Martin E. Huber, Kenji Watanabe, Takashi Tanaguchi, and Andrea
    Young. “Intrinsic Quantized Anomalous Hall Effect in a Moiré Heterostructure,
    Part III: Scanning Probe Magnetometry.” In <i>APS March Meeting 2020</i>, Vol.
    65. American Physical Society, 2020.'
  ieee: 'C. Tschirhart <i>et al.</i>, “Intrinsic quantized anomalous Hall effect in
    a moiré heterostructure, part III: Scanning probe magnetometry,” in <i>APS March
    Meeting 2020</i>, Denver, CO, United States, 2020, vol. 65, no. 1.'
  ista: 'Tschirhart C, Serlin M, Polshyn H, Zhang Y, Zhu J, Balents L, Huber ME, Watanabe
    K, Tanaguchi T, Young A. 2020. Intrinsic quantized anomalous Hall effect in a
    moiré heterostructure, part III: Scanning probe magnetometry. APS March Meeting
    2020. APS: American Physical Society, Bulletin of the American Physical Society,
    vol. 65, B59.00013.'
  mla: 'Tschirhart, Charles, et al. “Intrinsic Quantized Anomalous Hall Effect in
    a Moiré Heterostructure, Part III: Scanning Probe Magnetometry.” <i>APS March
    Meeting 2020</i>, vol. 65, no. 1, B59.00013, American Physical Society, 2020.'
  short: C. Tschirhart, M. Serlin, H. Polshyn, Y. Zhang, J. Zhu, L. Balents, M.E.
    Huber, K. Watanabe, T. Tanaguchi, A. Young, in:, APS March Meeting 2020, American
    Physical Society, 2020.
conference:
  end_date: 2020-03-06
  location: Denver, CO, United States
  name: 'APS: American Physical Society'
  start_date: 2020-03-02
date_created: 2022-01-28T10:57:49Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-02-21T15:57:52Z
day: '01'
extern: '1'
external_id:
  arxiv:
  - '1907.00261'
intvolume: '        65'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://meetings.aps.org/Meeting/MAR20/Session/B59.13
month: '03'
oa: 1
oa_version: Published Version
publication: APS March Meeting 2020
publication_identifier:
  issn:
  - 0003-0503
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '10619'
    relation: other
    status: public
status: public
title: 'Intrinsic quantized anomalous Hall effect in a moiré heterostructure, part
  III: Scanning probe magnetometry'
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 65
year: '2020'
...
---
_id: '10701'
abstract:
- lang: eng
  text: Partially filled Landau levels host competing electronic orders. For example,
    electron solids may prevail close to integer filling of the Landau levels before
    giving way to fractional quantum Hall liquids at higher carrier density1,2. Here,
    we report the observation of an electron solid with non-collinear spin texture
    in monolayer graphene, consistent with solidification of skyrmions3—topological
    spin textures characterized by quantized electrical charge4,5. We probe the spin
    texture of the solids using a modified Corbino geometry that allows ferromagnetic
    magnons to be launched and detected6,7. We find that magnon transport is highly
    efficient when one Landau level is filled (ν=1), consistent with quantum Hall
    ferromagnetic spin polarization. However, even minimal doping immediately quenches
    the magnon signal while leaving the vanishing low-temperature charge conductivity
    unchanged. Our results can be understood by the formation of a solid of charged
    skyrmions near ν=1, whose non-collinear spin texture leads to rapid magnon decay.
    Data near fractional fillings show evidence of several fractional skyrmion solids,
    suggesting that graphene hosts a highly tunable landscape of coupled spin and
    charge orders.
acknowledgement: We acknowledge discussions with B. Halperin, C. Huang, A. Macdonald
  and M. Zalatel. Experimental work at UCSB was supported by the Army Research Office
  under awards nos. MURI W911NF-16-1-0361 and W911NF-16-1-0482. K.W. and T.T. acknowledge
  support from the Elemental Strategy Initiative conducted by MEXT (Japan) and CREST
  (JPMJCR15F3), JST. A.F.Y. acknowledges the support of the David and Lucile Packard
  Foundation and and Alfred. P. Sloan Foundation.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Haoxin
  full_name: Zhou, Haoxin
  last_name: Zhou
- first_name: Hryhoriy
  full_name: Polshyn, Hryhoriy
  id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
  last_name: Polshyn
  orcid: 0000-0001-8223-8896
- first_name: Takashi
  full_name: Taniguchi, Takashi
  last_name: Taniguchi
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Andrea F.
  full_name: Young, Andrea F.
  last_name: Young
citation:
  ama: Zhou H, Polshyn H, Taniguchi T, Watanabe K, Young AF. Skyrmion solids in monolayer
    graphene. <i>Nature Physics</i>. 2020;16(2):154-158. doi:<a href="https://doi.org/10.1038/s41567-019-0729-8">10.1038/s41567-019-0729-8</a>
  apa: Zhou, H., Polshyn, H., Taniguchi, T., Watanabe, K., &#38; Young, A. F. (2020).
    Skyrmion solids in monolayer graphene. <i>Nature Physics</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41567-019-0729-8">https://doi.org/10.1038/s41567-019-0729-8</a>
  chicago: Zhou, Haoxin, Hryhoriy Polshyn, Takashi Taniguchi, Kenji Watanabe, and
    Andrea F. Young. “Skyrmion Solids in Monolayer Graphene.” <i>Nature Physics</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1038/s41567-019-0729-8">https://doi.org/10.1038/s41567-019-0729-8</a>.
  ieee: H. Zhou, H. Polshyn, T. Taniguchi, K. Watanabe, and A. F. Young, “Skyrmion
    solids in monolayer graphene,” <i>Nature Physics</i>, vol. 16, no. 2. Springer
    Nature, pp. 154–158, 2020.
  ista: Zhou H, Polshyn H, Taniguchi T, Watanabe K, Young AF. 2020. Skyrmion solids
    in monolayer graphene. Nature Physics. 16(2), 154–158.
  mla: Zhou, Haoxin, et al. “Skyrmion Solids in Monolayer Graphene.” <i>Nature Physics</i>,
    vol. 16, no. 2, Springer Nature, 2020, pp. 154–58, doi:<a href="https://doi.org/10.1038/s41567-019-0729-8">10.1038/s41567-019-0729-8</a>.
  short: H. Zhou, H. Polshyn, T. Taniguchi, K. Watanabe, A.F. Young, Nature Physics
    16 (2020) 154–158.
date_created: 2022-01-28T12:04:09Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2022-01-31T07:10:07Z
day: '01'
doi: 10.1038/s41567-019-0729-8
extern: '1'
external_id:
  arxiv:
  - '1904.11485'
intvolume: '        16'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1904.11485
month: '02'
oa: 1
oa_version: Preprint
page: 154-158
publication: Nature Physics
publication_identifier:
  eissn:
  - 1745-2481
  issn:
  - 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Skyrmion solids in monolayer graphene
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 16
year: '2020'
...
---
_id: '7567'
abstract:
- lang: eng
  text: Coxeter triangulations are triangulations of Euclidean space based on a single
    simplex. By this we mean that given an individual simplex we can recover the entire
    triangulation of Euclidean space by inductively reflecting in the faces of the
    simplex. In this paper we establish that the quality of the simplices in all Coxeter
    triangulations is O(1/d−−√) of the quality of regular simplex. We further investigate
    the Delaunay property for these triangulations. Moreover, we consider an extension
    of the Delaunay property, namely protection, which is a measure of non-degeneracy
    of a Delaunay triangulation. In particular, one family of Coxeter triangulations
    achieves the protection O(1/d2). We conjecture that both bounds are optimal for
    triangulations in Euclidean space.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Aruni
  full_name: Choudhary, Aruni
  last_name: Choudhary
- first_name: Siargey
  full_name: Kachanovich, Siargey
  last_name: Kachanovich
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Choudhary A, Kachanovich S, Wintraecken M. Coxeter triangulations have good
    quality. <i>Mathematics in Computer Science</i>. 2020;14:141-176. doi:<a href="https://doi.org/10.1007/s11786-020-00461-5">10.1007/s11786-020-00461-5</a>
  apa: Choudhary, A., Kachanovich, S., &#38; Wintraecken, M. (2020). Coxeter triangulations
    have good quality. <i>Mathematics in Computer Science</i>. Springer Nature. <a
    href="https://doi.org/10.1007/s11786-020-00461-5">https://doi.org/10.1007/s11786-020-00461-5</a>
  chicago: Choudhary, Aruni, Siargey Kachanovich, and Mathijs Wintraecken. “Coxeter
    Triangulations Have Good Quality.” <i>Mathematics in Computer Science</i>. Springer
    Nature, 2020. <a href="https://doi.org/10.1007/s11786-020-00461-5">https://doi.org/10.1007/s11786-020-00461-5</a>.
  ieee: A. Choudhary, S. Kachanovich, and M. Wintraecken, “Coxeter triangulations
    have good quality,” <i>Mathematics in Computer Science</i>, vol. 14. Springer
    Nature, pp. 141–176, 2020.
  ista: Choudhary A, Kachanovich S, Wintraecken M. 2020. Coxeter triangulations have
    good quality. Mathematics in Computer Science. 14, 141–176.
  mla: Choudhary, Aruni, et al. “Coxeter Triangulations Have Good Quality.” <i>Mathematics
    in Computer Science</i>, vol. 14, Springer Nature, 2020, pp. 141–76, doi:<a href="https://doi.org/10.1007/s11786-020-00461-5">10.1007/s11786-020-00461-5</a>.
  short: A. Choudhary, S. Kachanovich, M. Wintraecken, Mathematics in Computer Science
    14 (2020) 141–176.
corr_author: '1'
date_created: 2020-03-05T13:30:18Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s11786-020-00461-5
ec_funded: 1
file:
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  checksum: 1d145f3ab50ccee735983cb89236e609
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T10:18:02Z
  date_updated: 2020-11-20T10:18:02Z
  file_id: '8783'
  file_name: 2020_MathCompScie_Choudhary.pdf
  file_size: 872275
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T10:18:02Z
has_accepted_license: '1'
intvolume: '        14'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 141-176
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Mathematics in Computer Science
publication_identifier:
  eissn:
  - 1661-8289
  issn:
  - 1661-8270
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coxeter triangulations have good quality
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2020'
...
---
_id: '7569'
abstract:
- lang: eng
  text: 'Genes differ in the frequency at which they are expressed and in the form
    of regulation used to control their activity. In particular, positive or negative
    regulation can lead to activation of a gene in response to an external signal.
    Previous works proposed that the form of regulation of a gene correlates with
    its frequency of usage: positive regulation when the gene is frequently expressed
    and negative regulation when infrequently expressed. Such network design means
    that, in the absence of their regulators, the genes are found in their least required
    activity state, hence regulatory intervention is often necessary. Due to the multitude
    of genes and regulators, spurious binding and unbinding events, called “crosstalk”,
    could occur. To determine how the form of regulation affects the global crosstalk
    in the network, we used a mathematical model that includes multiple regulators
    and multiple target genes. We found that crosstalk depends non-monotonically on
    the availability of regulators. Our analysis showed that excess use of regulation
    entailed by the formerly suggested network design caused high crosstalk levels
    in a large part of the parameter space. We therefore considered the opposite ‘idle’
    design, where the default unregulated state of genes is their frequently required
    activity state. We found, that ‘idle’ design minimized the use of regulation and
    thus minimized crosstalk. In addition, we estimated global crosstalk of S. cerevisiae
    using transcription factors binding data. We demonstrated that even partial network
    data could suffice to estimate its global crosstalk, suggesting its applicability
    to additional organisms. We found that S. cerevisiae estimated crosstalk is lower
    than that of a random network, suggesting that natural selection reduces crosstalk.
    In summary, our study highlights a new type of protein production cost which is
    typically overlooked: that of regulatory interference caused by the presence of
    excess regulators in the cell. It demonstrates the importance of whole-network
    descriptions, which could show effects missed by single-gene models.'
article_number: e1007642
article_processing_charge: No
article_type: original
author:
- first_name: Rok
  full_name: Grah, Rok
  id: 483E70DE-F248-11E8-B48F-1D18A9856A87
  last_name: Grah
  orcid: 0000-0003-2539-3560
- first_name: Tamar
  full_name: Friedlander, Tamar
  last_name: Friedlander
citation:
  ama: Grah R, Friedlander T. The relation between crosstalk and gene regulation form
    revisited. <i>PLOS Computational Biology</i>. 2020;16(2). doi:<a href="https://doi.org/10.1371/journal.pcbi.1007642">10.1371/journal.pcbi.1007642</a>
  apa: Grah, R., &#38; Friedlander, T. (2020). The relation between crosstalk and
    gene regulation form revisited. <i>PLOS Computational Biology</i>. Public Library
    of Science. <a href="https://doi.org/10.1371/journal.pcbi.1007642">https://doi.org/10.1371/journal.pcbi.1007642</a>
  chicago: Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene
    Regulation Form Revisited.” <i>PLOS Computational Biology</i>. Public Library
    of Science, 2020. <a href="https://doi.org/10.1371/journal.pcbi.1007642">https://doi.org/10.1371/journal.pcbi.1007642</a>.
  ieee: R. Grah and T. Friedlander, “The relation between crosstalk and gene regulation
    form revisited,” <i>PLOS Computational Biology</i>, vol. 16, no. 2. Public Library
    of Science, 2020.
  ista: Grah R, Friedlander T. 2020. The relation between crosstalk and gene regulation
    form revisited. PLOS Computational Biology. 16(2), e1007642.
  mla: Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene
    Regulation Form Revisited.” <i>PLOS Computational Biology</i>, vol. 16, no. 2,
    e1007642, Public Library of Science, 2020, doi:<a href="https://doi.org/10.1371/journal.pcbi.1007642">10.1371/journal.pcbi.1007642</a>.
  short: R. Grah, T. Friedlander, PLOS Computational Biology 16 (2020).
date_created: 2020-03-06T07:39:38Z
date_published: 2020-02-25T00:00:00Z
date_updated: 2026-04-08T07:25:08Z
day: '25'
ddc:
- '000'
- '570'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1371/journal.pcbi.1007642
external_id:
  isi:
  - '000526725200019'
  pmid:
  - '32097416'
file:
- access_level: open_access
  checksum: 5239dd134dc6e1c71fe7b3ce2953da37
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-09T15:12:21Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7579'
  file_name: 2020_PlosCompBio_Grah.pdf
  file_size: 2209325
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '        16'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Computational Biology
publication_identifier:
  issn:
  - 1553-7358
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
  record:
  - id: '9716'
    relation: research_data
    status: deleted
  - id: '9776'
    relation: research_data
    status: public
  - id: '9779'
    relation: research_data
    status: public
  - id: '9777'
    relation: research_data
    status: public
  - id: '8155'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: The relation between crosstalk and gene regulation form revisited
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2020'
...
---
_id: '7570'
abstract:
- lang: eng
  text: The relaxation of few-body quantum systems can strongly depend on the initial
    state when the system’s semiclassical phase space is mixed; i.e., regions of chaotic
    motion coexist with regular islands. In recent years, there has been much effort
    to understand the process of thermalization in strongly interacting quantum systems
    that often lack an obvious semiclassical limit. The time-dependent variational
    principle (TDVP) allows one to systematically derive an effective classical (nonlinear)
    dynamical system by projecting unitary many-body dynamics onto a manifold of weakly
    entangled variational states. We demonstrate that such dynamical systems generally
    possess mixed phase space. When TDVP errors are small, the mixed phase space leaves
    a footprint on the exact dynamics of the quantum model. For example, when the
    system is initialized in a state belonging to a stable periodic orbit or the surrounding
    regular region, it exhibits persistent many-body quantum revivals. As a proof
    of principle, we identify new types of “quantum many-body scars,” i.e., initial
    states that lead to long-time oscillations in a model of interacting Rydberg atoms
    in one and two dimensions. Intriguingly, the initial states that give rise to
    most robust revivals are typically entangled states. On the other hand, even when
    TDVP errors are large, as in the thermalizing tilted-field Ising model, initializing
    the system in a regular region of phase space leads to a surprising slowdown of
    thermalization. Our work establishes TDVP as a method for identifying interacting
    quantum systems with anomalous dynamics in arbitrary dimensions. Moreover, the
    mixed phase space classical variational equations allow one to find slowly thermalizing
    initial conditions in interacting models. Our results shed light on a link between
    classical and quantum chaos, pointing toward possible extensions of the classical
    Kolmogorov-Arnold-Moser theorem to quantum systems.
article_number: '011055'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Alexios
  full_name: Michailidis, Alexios
  id: 36EBAD38-F248-11E8-B48F-1D18A9856A87
  last_name: Michailidis
  orcid: 0000-0002-8443-1064
- first_name: C. J.
  full_name: Turner, C. J.
  last_name: Turner
- first_name: Z.
  full_name: Papić, Z.
  last_name: Papić
- first_name: D. A.
  full_name: Abanin, D. A.
  last_name: Abanin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Michailidis A, Turner CJ, Papić Z, Abanin DA, Serbyn M. Slow quantum thermalization
    and many-body revivals from mixed phase space. <i>Physical Review X</i>. 2020;10(1).
    doi:<a href="https://doi.org/10.1103/physrevx.10.011055">10.1103/physrevx.10.011055</a>
  apa: Michailidis, A., Turner, C. J., Papić, Z., Abanin, D. A., &#38; Serbyn, M.
    (2020). Slow quantum thermalization and many-body revivals from mixed phase space.
    <i>Physical Review X</i>. American Physical Society. <a href="https://doi.org/10.1103/physrevx.10.011055">https://doi.org/10.1103/physrevx.10.011055</a>
  chicago: Michailidis, Alexios, C. J. Turner, Z. Papić, D. A. Abanin, and Maksym
    Serbyn. “Slow Quantum Thermalization and Many-Body Revivals from Mixed Phase Space.”
    <i>Physical Review X</i>. American Physical Society, 2020. <a href="https://doi.org/10.1103/physrevx.10.011055">https://doi.org/10.1103/physrevx.10.011055</a>.
  ieee: A. Michailidis, C. J. Turner, Z. Papić, D. A. Abanin, and M. Serbyn, “Slow
    quantum thermalization and many-body revivals from mixed phase space,” <i>Physical
    Review X</i>, vol. 10, no. 1. American Physical Society, 2020.
  ista: Michailidis A, Turner CJ, Papić Z, Abanin DA, Serbyn M. 2020. Slow quantum
    thermalization and many-body revivals from mixed phase space. Physical Review
    X. 10(1), 011055.
  mla: Michailidis, Alexios, et al. “Slow Quantum Thermalization and Many-Body Revivals
    from Mixed Phase Space.” <i>Physical Review X</i>, vol. 10, no. 1, 011055, American
    Physical Society, 2020, doi:<a href="https://doi.org/10.1103/physrevx.10.011055">10.1103/physrevx.10.011055</a>.
  short: A. Michailidis, C.J. Turner, Z. Papić, D.A. Abanin, M. Serbyn, Physical Review
    X 10 (2020).
date_created: 2020-03-08T18:02:01Z
date_published: 2020-03-04T00:00:00Z
date_updated: 2023-08-18T07:01:07Z
day: '04'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/physrevx.10.011055
external_id:
  arxiv:
  - '1905.08564'
  isi:
  - '000517969300001'
file:
- access_level: open_access
  checksum: 4b3f2c13873d35230173c73d0e11c408
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-12T12:13:07Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7581'
  file_name: 2020_PhysicalReviewX_Michailidis.pdf
  file_size: 17828638
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Physical Review X
publication_identifier:
  issn:
  - 2160-3308
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/classical-physics-helps-predict-fate-of-interacting-quantum-systems/
scopus_import: '1'
status: public
title: Slow quantum thermalization and many-body revivals from mixed phase space
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2020'
...
---
_id: '7572'
abstract:
- lang: eng
  text: The polymerization–depolymerization dynamics of cytoskeletal proteins play
    essential roles in the self-organization of cytoskeletal structures, in eukaryotic
    as well as prokaryotic cells. While advances in fluorescence microscopy and in
    vitro reconstitution experiments have helped to study the dynamic properties of
    these complex systems, methods that allow to collect and analyze large quantitative
    datasets of the underlying polymer dynamics are still missing. Here, we present
    a novel image analysis workflow to study polymerization dynamics of active filaments
    in a nonbiased, highly automated manner. Using treadmilling filaments of the bacterial
    tubulin FtsZ as an example, we demonstrate that our method is able to specifically
    detect, track and analyze growth and shrinkage of polymers, even in dense networks
    of filaments. We believe that this automated method can facilitate the analysis
    of a large variety of dynamic cytoskeletal systems, using standard time-lapse
    movies obtained from experiments in vitro as well as in the living cell. Moreover,
    we provide scripts implementing this method as supplementary material.
alternative_title:
- Methods in Cell Biology
article_processing_charge: No
author:
- first_name: Paulo R
  full_name: Dos Santos Caldas, Paulo R
  id: 38FCDB4C-F248-11E8-B48F-1D18A9856A87
  last_name: Dos Santos Caldas
  orcid: 0000-0001-6730-4461
- first_name: Philipp
  full_name: Radler, Philipp
  id: 40136C2A-F248-11E8-B48F-1D18A9856A87
  last_name: Radler
  orcid: '0000-0001-9198-2182 '
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
citation:
  ama: 'Dos Santos Caldas PR, Radler P, Sommer CM, Loose M. Computational analysis
    of filament polymerization dynamics in cytoskeletal networks. In: Tran P, ed.
    <i>Methods in Cell Biology</i>. Vol 158. Elsevier; 2020:145-161. doi:<a href="https://doi.org/10.1016/bs.mcb.2020.01.006">10.1016/bs.mcb.2020.01.006</a>'
  apa: Dos Santos Caldas, P. R., Radler, P., Sommer, C. M., &#38; Loose, M. (2020).
    Computational analysis of filament polymerization dynamics in cytoskeletal networks.
    In P. Tran (Ed.), <i>Methods in Cell Biology</i> (Vol. 158, pp. 145–161). Elsevier.
    <a href="https://doi.org/10.1016/bs.mcb.2020.01.006">https://doi.org/10.1016/bs.mcb.2020.01.006</a>
  chicago: Dos Santos Caldas, Paulo R, Philipp Radler, Christoph M Sommer, and Martin
    Loose. “Computational Analysis of Filament Polymerization Dynamics in Cytoskeletal
    Networks.” In <i>Methods in Cell Biology</i>, edited by Phong  Tran, 158:145–61.
    Elsevier, 2020. <a href="https://doi.org/10.1016/bs.mcb.2020.01.006">https://doi.org/10.1016/bs.mcb.2020.01.006</a>.
  ieee: P. R. Dos Santos Caldas, P. Radler, C. M. Sommer, and M. Loose, “Computational
    analysis of filament polymerization dynamics in cytoskeletal networks,” in <i>Methods
    in Cell Biology</i>, vol. 158, P. Tran, Ed. Elsevier, 2020, pp. 145–161.
  ista: 'Dos Santos Caldas PR, Radler P, Sommer CM, Loose M. 2020.Computational analysis
    of filament polymerization dynamics in cytoskeletal networks. In: Methods in Cell
    Biology. Methods in Cell Biology, vol. 158, 145–161.'
  mla: Dos Santos Caldas, Paulo R., et al. “Computational Analysis of Filament Polymerization
    Dynamics in Cytoskeletal Networks.” <i>Methods in Cell Biology</i>, edited by
    Phong  Tran, vol. 158, Elsevier, 2020, pp. 145–61, doi:<a href="https://doi.org/10.1016/bs.mcb.2020.01.006">10.1016/bs.mcb.2020.01.006</a>.
  short: P.R. Dos Santos Caldas, P. Radler, C.M. Sommer, M. Loose, in:, P. Tran (Ed.),
    Methods in Cell Biology, Elsevier, 2020, pp. 145–161.
date_created: 2020-03-08T23:00:47Z
date_published: 2020-02-27T00:00:00Z
date_updated: 2026-04-08T07:26:30Z
day: '27'
department:
- _id: MaLo
doi: 10.1016/bs.mcb.2020.01.006
ec_funded: 1
editor:
- first_name: 'Phong '
  full_name: 'Tran, Phong '
  last_name: Tran
external_id:
  isi:
  - '000611826500008'
intvolume: '       158'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/839571
month: '02'
oa: 1
oa_version: Preprint
page: 145-161
project:
- _id: 2595697A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '679239'
  name: Self-Organization of the Bacterial Cell
- _id: 260D98C8-B435-11E9-9278-68D0E5697425
  name: Reconstitution of Bacterial Cell Division Using Purified Components
publication: Methods in Cell Biology
publication_identifier:
  issn:
  - 0091-679X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '8358'
    relation: part_of_dissertation
    status: public
scopus_import: '1'
status: public
title: Computational analysis of filament polymerization dynamics in cytoskeletal
  networks
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 158
year: '2020'
...
---
_id: '7573'
abstract:
- lang: eng
  text: This paper deals with dynamical optimal transport metrics defined by spatial
    discretisation of the Benamou–Benamou formula for the Kantorovich metric . Such
    metrics appear naturally in discretisations of -gradient flow formulations for
    dissipative PDE. However, it has recently been shown that these metrics do not
    in general converge to , unless strong geometric constraints are imposed on the
    discrete mesh. In this paper we prove that, in a 1-dimensional periodic setting,
    discrete transport metrics converge to a limiting transport metric with a non-trivial
    effective mobility. This mobility depends sensitively on the geometry of the mesh
    and on the non-local mobility at the discrete level. Our result quantifies to
    what extent discrete transport can make use of microstructure in the mesh to reduce
    the cost of transport.
acknowledgement: J.M. gratefully acknowledges support by the European Research Council
  (ERC) under the European Union's Horizon 2020 research and innovation programme
  (grant agreement No 716117). J.M. and L.P. also acknowledge support from the Austrian
  Science Fund (FWF), grants No F65 and W1245. E.K. gratefully acknowledges support
  by the German Research Foundation through the Hausdorff Center for Mathematics and
  the Collaborative Research Center 1060. P.G. is partially funded by the Deutsche
  Forschungsgemeinschaft (DFG, German Research Foundation) – 350398276.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Peter
  full_name: Gladbach, Peter
  last_name: Gladbach
- first_name: Eva
  full_name: Kopfer, Eva
  last_name: Kopfer
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Lorenzo
  full_name: Portinale, Lorenzo
  id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
  last_name: Portinale
citation:
  ama: Gladbach P, Kopfer E, Maas J, Portinale L. Homogenisation of one-dimensional
    discrete optimal transport. <i>Journal de Mathematiques Pures et Appliquees</i>.
    2020;139(7):204-234. doi:<a href="https://doi.org/10.1016/j.matpur.2020.02.008">10.1016/j.matpur.2020.02.008</a>
  apa: Gladbach, P., Kopfer, E., Maas, J., &#38; Portinale, L. (2020). Homogenisation
    of one-dimensional discrete optimal transport. <i>Journal de Mathematiques Pures
    et Appliquees</i>. Elsevier. <a href="https://doi.org/10.1016/j.matpur.2020.02.008">https://doi.org/10.1016/j.matpur.2020.02.008</a>
  chicago: Gladbach, Peter, Eva Kopfer, Jan Maas, and Lorenzo Portinale. “Homogenisation
    of One-Dimensional Discrete Optimal Transport.” <i>Journal de Mathematiques Pures
    et Appliquees</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.matpur.2020.02.008">https://doi.org/10.1016/j.matpur.2020.02.008</a>.
  ieee: P. Gladbach, E. Kopfer, J. Maas, and L. Portinale, “Homogenisation of one-dimensional
    discrete optimal transport,” <i>Journal de Mathematiques Pures et Appliquees</i>,
    vol. 139, no. 7. Elsevier, pp. 204–234, 2020.
  ista: Gladbach P, Kopfer E, Maas J, Portinale L. 2020. Homogenisation of one-dimensional
    discrete optimal transport. Journal de Mathematiques Pures et Appliquees. 139(7),
    204–234.
  mla: Gladbach, Peter, et al. “Homogenisation of One-Dimensional Discrete Optimal
    Transport.” <i>Journal de Mathematiques Pures et Appliquees</i>, vol. 139, no.
    7, Elsevier, 2020, pp. 204–34, doi:<a href="https://doi.org/10.1016/j.matpur.2020.02.008">10.1016/j.matpur.2020.02.008</a>.
  short: P. Gladbach, E. Kopfer, J. Maas, L. Portinale, Journal de Mathematiques Pures
    et Appliquees 139 (2020) 204–234.
date_created: 2020-03-08T23:00:47Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2026-04-08T07:00:03Z
day: '01'
department:
- _id: JaMa
doi: 10.1016/j.matpur.2020.02.008
ec_funded: 1
external_id:
  arxiv:
  - '1905.05757'
  isi:
  - '000539439400008'
intvolume: '       139'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1905.05757
month: '07'
oa: 1
oa_version: Preprint
page: 204-234
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: 260482E2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: F06504
  name: Taming Complexity in Partial Differential Systems
- _id: 260788DE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1245
  name: Dissipation and dispersion in nonlinear partial differential equations
publication: Journal de Mathematiques Pures et Appliquees
publication_identifier:
  issn:
  - 0021-7824
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '10030'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Homogenisation of one-dimensional discrete optimal transport
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 139
year: '2020'
...
---
_id: '7580'
abstract:
- lang: eng
  text: The eukaryotic endomembrane system is controlled by small GTPases of the Rab
    family, which are activated at defined times and locations in a switch-like manner.
    While this switch is well understood for an individual protein, how regulatory
    networks produce intracellular activity patterns is currently not known. Here,
    we combine in vitro reconstitution experiments with computational modeling to
    study a minimal Rab5 activation network. We find that the molecular interactions
    in this system give rise to a positive feedback and bistable collective switching
    of Rab5. Furthermore, we find that switching near the critical point is intrinsically
    stochastic and provide evidence that controlling the inactive population of Rab5
    on the membrane can shape the network response. Notably, we demonstrate that collective
    switching can spread on the membrane surface as a traveling wave of Rab5 activation.
    Together, our findings reveal how biochemical signaling networks control vesicle
    trafficking pathways and how their nonequilibrium properties define the spatiotemporal
    organization of the cell.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
article_processing_charge: No
article_type: original
author:
- first_name: Urban
  full_name: Bezeljak, Urban
  id: 2A58201A-F248-11E8-B48F-1D18A9856A87
  last_name: Bezeljak
  orcid: 0000-0003-1365-5631
- first_name: Hrushikesh
  full_name: Loya, Hrushikesh
  last_name: Loya
- first_name: Beata M
  full_name: Kaczmarek, Beata M
  id: 36FA4AFA-F248-11E8-B48F-1D18A9856A87
  last_name: Kaczmarek
- first_name: Timothy E.
  full_name: Saunders, Timothy E.
  last_name: Saunders
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
citation:
  ama: Bezeljak U, Loya H, Kaczmarek BM, Saunders TE, Loose M. Stochastic activation
    and bistability in a Rab GTPase regulatory network. <i>Proceedings of the National
    Academy of Sciences of the United States of America</i>. 2020;117(12):6504-6549.
    doi:<a href="https://doi.org/10.1073/pnas.1921027117">10.1073/pnas.1921027117</a>
  apa: Bezeljak, U., Loya, H., Kaczmarek, B. M., Saunders, T. E., &#38; Loose, M.
    (2020). Stochastic activation and bistability in a Rab GTPase regulatory network.
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>.
    National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1921027117">https://doi.org/10.1073/pnas.1921027117</a>
  chicago: Bezeljak, Urban, Hrushikesh Loya, Beata M Kaczmarek, Timothy E. Saunders,
    and Martin Loose. “Stochastic Activation and Bistability in a Rab GTPase Regulatory
    Network.” <i>Proceedings of the National Academy of Sciences of the United States
    of America</i>. National Academy of Sciences, 2020. <a href="https://doi.org/10.1073/pnas.1921027117">https://doi.org/10.1073/pnas.1921027117</a>.
  ieee: U. Bezeljak, H. Loya, B. M. Kaczmarek, T. E. Saunders, and M. Loose, “Stochastic
    activation and bistability in a Rab GTPase regulatory network,” <i>Proceedings
    of the National Academy of Sciences of the United States of America</i>, vol.
    117, no. 12. National Academy of Sciences, pp. 6504–6549, 2020.
  ista: Bezeljak U, Loya H, Kaczmarek BM, Saunders TE, Loose M. 2020. Stochastic activation
    and bistability in a Rab GTPase regulatory network. Proceedings of the National
    Academy of Sciences of the United States of America. 117(12), 6504–6549.
  mla: Bezeljak, Urban, et al. “Stochastic Activation and Bistability in a Rab GTPase
    Regulatory Network.” <i>Proceedings of the National Academy of Sciences of the
    United States of America</i>, vol. 117, no. 12, National Academy of Sciences,
    2020, pp. 6504–49, doi:<a href="https://doi.org/10.1073/pnas.1921027117">10.1073/pnas.1921027117</a>.
  short: U. Bezeljak, H. Loya, B.M. Kaczmarek, T.E. Saunders, M. Loose, Proceedings
    of the National Academy of Sciences of the United States of America 117 (2020)
    6504–6549.
date_created: 2020-03-12T05:32:26Z
date_published: 2020-03-24T00:00:00Z
date_updated: 2026-04-08T07:24:55Z
day: '24'
department:
- _id: MaLo
- _id: CaBe
doi: 10.1073/pnas.1921027117
external_id:
  isi:
  - '000521821800040'
  pmid:
  - '32161136'
intvolume: '       117'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/776567
month: '03'
oa: 1
oa_version: Preprint
page: 6504-6549
pmid: 1
project:
- _id: 2599F062-B435-11E9-9278-68D0E5697425
  grant_number: RGY0083/2016
  name: Reconstitution of cell polarity and axis determination in a cell-free system
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/proteins-as-molecular-switches/
  record:
  - id: '8341'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Stochastic activation and bistability in a Rab GTPase regulatory network
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 117
year: '2020'
...
---
_id: '7582'
abstract:
- lang: eng
  text: Small RNAs (smRNA, 19–25 nucleotides long), which are transcribed by RNA polymerase
    II, regulate the expression of genes involved in a multitude of processes in eukaryotes.
    miRNA biogenesis and the proteins involved in the biogenesis pathway differ across
    plant and animal lineages. The major proteins constituting the biogenesis pathway,
    namely, the Dicers (DCL/DCR) and Argonautes (AGOs), have been extensively studied.
    However, the accessory proteins (DAWDLE (DDL), SERRATE (SE), and TOUGH (TGH))
    of the pathway that differs across the two lineages remain largely uncharacterized.
    We present the first detailed report on the molecular evolution and divergence
    of these proteins across eukaryotes. Although DDL is present in eukaryotes and
    prokaryotes, SE and TGH appear to be specific to eukaryotes. The addition/deletion
    of specific domains and/or domain-specific sequence divergence in the three proteins
    points to the observed functional divergence of these proteins across the two
    lineages, which correlates with the differences in miRNA length across the two
    lineages. Our data enhance the current understanding of the structure–function
    relationship of these proteins and reveals previous unexplored crucial residues
    in the three proteins that can be used as a basis for further functional characterization.
    The data presented here on the number of miRNAs in crown eukaryotic lineages are
    consistent with the notion of the expansion of the number of miRNA-coding genes
    in animal and plant lineages correlating with organismal complexity. Whether this
    difference in functionally correlates with the diversification (or presence/absence)
    of the three proteins studied here or the miRNA signaling in the plant and animal
    lineages is unclear. Based on our results of the three proteins studied here and
    previously available data concerning the evolution of miRNA genes in the plant
    and animal lineages, we believe that miRNAs probably evolved once in the ancestor
    to crown eukaryotes and have diversified independently in the eukaryotes.
article_number: '299'
article_processing_charge: No
article_type: original
author:
- first_name: Taraka Ramji
  full_name: Moturu, Taraka Ramji
  last_name: Moturu
- first_name: Sansrity
  full_name: Sinha, Sansrity
  last_name: Sinha
- first_name: Hymavathi
  full_name: Salava, Hymavathi
  last_name: Salava
- first_name: Sravankumar
  full_name: Thula, Sravankumar
  last_name: Thula
- first_name: Tomasz
  full_name: Nodzyński, Tomasz
  last_name: Nodzyński
- first_name: Radka Svobodová
  full_name: Vařeková, Radka Svobodová
  last_name: Vařeková
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Sibu
  full_name: Simon, Sibu
  id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
  last_name: Simon
  orcid: 0000-0002-1998-6741
citation:
  ama: Moturu TR, Sinha S, Salava H, et al. Molecular evolution and diversification
    of proteins involved in miRNA maturation pathway. <i>Plants</i>. 2020;9(3). doi:<a
    href="https://doi.org/10.3390/plants9030299">10.3390/plants9030299</a>
  apa: Moturu, T. R., Sinha, S., Salava, H., Thula, S., Nodzyński, T., Vařeková, R.
    S., … Simon, S. (2020). Molecular evolution and diversification of proteins involved
    in miRNA maturation pathway. <i>Plants</i>. MDPI. <a href="https://doi.org/10.3390/plants9030299">https://doi.org/10.3390/plants9030299</a>
  chicago: Moturu, Taraka Ramji, Sansrity Sinha, Hymavathi Salava, Sravankumar Thula,
    Tomasz Nodzyński, Radka Svobodová Vařeková, Jiří Friml, and Sibu Simon. “Molecular
    Evolution and Diversification of Proteins Involved in MiRNA Maturation Pathway.”
    <i>Plants</i>. MDPI, 2020. <a href="https://doi.org/10.3390/plants9030299">https://doi.org/10.3390/plants9030299</a>.
  ieee: T. R. Moturu <i>et al.</i>, “Molecular evolution and diversification of proteins
    involved in miRNA maturation pathway,” <i>Plants</i>, vol. 9, no. 3. MDPI, 2020.
  ista: Moturu TR, Sinha S, Salava H, Thula S, Nodzyński T, Vařeková RS, Friml J,
    Simon S. 2020. Molecular evolution and diversification of proteins involved in
    miRNA maturation pathway. Plants. 9(3), 299.
  mla: Moturu, Taraka Ramji, et al. “Molecular Evolution and Diversification of Proteins
    Involved in MiRNA Maturation Pathway.” <i>Plants</i>, vol. 9, no. 3, 299, MDPI,
    2020, doi:<a href="https://doi.org/10.3390/plants9030299">10.3390/plants9030299</a>.
  short: T.R. Moturu, S. Sinha, H. Salava, S. Thula, T. Nodzyński, R.S. Vařeková,
    J. Friml, S. Simon, Plants 9 (2020).
corr_author: '1'
date_created: 2020-03-15T23:00:52Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2026-04-02T14:35:47Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.3390/plants9030299
ec_funded: 1
external_id:
  isi:
  - '000525315000035'
  pmid:
  - '32121542'
file:
- access_level: open_access
  checksum: 6d5af3e17266a48996b4af4e67e88a85
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-23T13:37:00Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7614'
  file_name: 2020_Plants_Moturu.pdf
  file_size: 2373484
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Plants
publication_identifier:
  eissn:
  - 2223-7747
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Molecular evolution and diversification of proteins involved in miRNA maturation
  pathway
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 9
year: '2020'
...
---
_id: '7586'
abstract:
- lang: eng
  text: CLC chloride/proton exchangers may support acidification of endolysosomes
    and raise their luminal Cl− concentration. Disruption of endosomal ClC‐3 causes
    severe neurodegeneration. To assess the importance of ClC‐3 Cl−/H+ exchange, we
    now generate Clcn3unc/unc mice in which ClC‐3 is converted into a Cl− channel.
    Unlike Clcn3−/− mice, Clcn3unc/unc mice appear normal owing to compensation by
    ClC‐4 with which ClC‐3 forms heteromers. ClC‐4 protein levels are strongly reduced
    in Clcn3−/−, but not in Clcn3unc/unc mice because ClC‐3unc binds and stabilizes
    ClC‐4 like wild‐type ClC‐3. Although mice lacking ClC‐4 appear healthy, its absence
    in Clcn3unc/unc/Clcn4−/− mice entails even stronger neurodegeneration than observed
    in Clcn3−/− mice. A fraction of ClC‐3 is found on synaptic vesicles, but miniature
    postsynaptic currents and synaptic vesicle acidification are not affected in Clcn3unc/unc
    or Clcn3−/− mice before neurodegeneration sets in. Both, Cl−/H+‐exchange activity
    and the stabilizing effect on ClC‐4, are central to the biological function of
    ClC‐3.
acknowledgement: "We thank T. Stauber and T. Breiderhoff for cloning expression constructs;
  K. Räbel, S. Hohensee, and C. Backhaus for technical assistance; R. Jahn (MPIbpc,
  Göttingen) for providing the equipment required for SV purification; and A\r\nWoehler
  (MDC, Berlin) for assistance with SV imaging. Supported, in part, by grants from
  the Deutsche Forschungsgemeinschaft (JE164/9-2, SFB740 TP C5, FOR 2625 (JE164/14-1),
  NeuroCure Cluster of Excellence), the European Research Council Advanced Grant CYTOVOLION
  (ERC 294435) and the Prix Louis-Jeantet de Médecine to TJJ, and Peter and Traudl
  Engelhorn fellowship to ZF."
article_number: e103358
article_processing_charge: No
article_type: original
author:
- first_name: Stefanie
  full_name: Weinert, Stefanie
  last_name: Weinert
- first_name: Niclas
  full_name: Gimber, Niclas
  last_name: Gimber
- first_name: Dorothea
  full_name: Deuschel, Dorothea
  last_name: Deuschel
- first_name: Till
  full_name: Stuhlmann, Till
  last_name: Stuhlmann
- first_name: Dmytro
  full_name: Puchkov, Dmytro
  last_name: Puchkov
- first_name: Zohreh
  full_name: Farsi, Zohreh
  last_name: Farsi
- first_name: Carmen F.
  full_name: Ludwig, Carmen F.
  last_name: Ludwig
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Karen I.
  full_name: López-Cayuqueo, Karen I.
  last_name: López-Cayuqueo
- first_name: Rosa
  full_name: Planells-Cases, Rosa
  last_name: Planells-Cases
- first_name: Thomas J.
  full_name: Jentsch, Thomas J.
  last_name: Jentsch
citation:
  ama: Weinert S, Gimber N, Deuschel D, et al. Uncoupling endosomal CLC chloride/proton
    exchange causes severe neurodegeneration. <i>EMBO Journal</i>. 2020;39. doi:<a
    href="https://doi.org/10.15252/embj.2019103358">10.15252/embj.2019103358</a>
  apa: Weinert, S., Gimber, N., Deuschel, D., Stuhlmann, T., Puchkov, D., Farsi, Z.,
    … Jentsch, T. J. (2020). Uncoupling endosomal CLC chloride/proton exchange causes
    severe neurodegeneration. <i>EMBO Journal</i>. EMBO Press. <a href="https://doi.org/10.15252/embj.2019103358">https://doi.org/10.15252/embj.2019103358</a>
  chicago: Weinert, Stefanie, Niclas Gimber, Dorothea Deuschel, Till Stuhlmann, Dmytro
    Puchkov, Zohreh Farsi, Carmen F. Ludwig, et al. “Uncoupling Endosomal CLC Chloride/Proton
    Exchange Causes Severe Neurodegeneration.” <i>EMBO Journal</i>. EMBO Press, 2020.
    <a href="https://doi.org/10.15252/embj.2019103358">https://doi.org/10.15252/embj.2019103358</a>.
  ieee: S. Weinert <i>et al.</i>, “Uncoupling endosomal CLC chloride/proton exchange
    causes severe neurodegeneration,” <i>EMBO Journal</i>, vol. 39. EMBO Press, 2020.
  ista: Weinert S, Gimber N, Deuschel D, Stuhlmann T, Puchkov D, Farsi Z, Ludwig CF,
    Novarino G, López-Cayuqueo KI, Planells-Cases R, Jentsch TJ. 2020. Uncoupling
    endosomal CLC chloride/proton exchange causes severe neurodegeneration. EMBO Journal.
    39, e103358.
  mla: Weinert, Stefanie, et al. “Uncoupling Endosomal CLC Chloride/Proton Exchange
    Causes Severe Neurodegeneration.” <i>EMBO Journal</i>, vol. 39, e103358, EMBO
    Press, 2020, doi:<a href="https://doi.org/10.15252/embj.2019103358">10.15252/embj.2019103358</a>.
  short: S. Weinert, N. Gimber, D. Deuschel, T. Stuhlmann, D. Puchkov, Z. Farsi, C.F.
    Ludwig, G. Novarino, K.I. López-Cayuqueo, R. Planells-Cases, T.J. Jentsch, EMBO
    Journal 39 (2020).
date_created: 2020-03-15T23:00:55Z
date_published: 2020-03-02T00:00:00Z
date_updated: 2026-04-16T09:35:48Z
day: '02'
ddc:
- '570'
department:
- _id: GaNo
doi: 10.15252/embj.2019103358
external_id:
  isi:
  - '000517335000001'
  pmid:
  - '32118314'
file:
- access_level: open_access
  checksum: 82750a7a93e3740decbce8474004111a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-23T13:51:11Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7615'
  file_name: 2020_EMBO_Weinert.pdf
  file_size: 12243278
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '        39'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: EMBO Journal
publication_identifier:
  eissn:
  - 1460-2075
  issn:
  - 0261-4189
publication_status: published
publisher: EMBO Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Uncoupling endosomal CLC chloride/proton exchange causes severe neurodegeneration
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 39
year: '2020'
...
---
_id: '7593'
abstract:
- lang: eng
  text: Heterozygous loss of human PAFAH1B1 (coding for LIS1) results in the disruption
    of neurogenesis and neuronal migration via dysregulation of microtubule (MT) stability
    and dynein motor function/localization that alters mitotic spindle orientation,
    chromosomal segregation, and nuclear migration. Recently, human induced pluripotent
    stem cell (iPSC) models revealed an important role for LIS1 in controlling the
    length of terminal cell divisions of outer radial glial (oRG) progenitors, suggesting
    cellular functions of LIS1 in regulating neural progenitor cell (NPC) daughter
    cell separation. Here we examined the late mitotic stages NPCs in vivo and mouse
    embryonic fibroblasts (MEFs) in vitro from Pafah1b1-deficient mutants. Pafah1b1-deficient
    neocortical NPCs and MEFs similarly exhibited cleavage plane displacement with
    mislocalization of furrow-associated markers, associated with actomyosin dysfunction
    and cell membrane hyper-contractility. Thus, it suggests LIS1 acts as a key molecular
    link connecting MTs/dynein and actomyosin, ensuring that cell membrane contractility
    is tightly controlled to execute proper daughter cell separation.
article_number: '51512'
article_processing_charge: No
article_type: original
author:
- first_name: Hyang Mi
  full_name: Moon, Hyang Mi
  last_name: Moon
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: Liqun
  full_name: Luo, Liqun
  last_name: Luo
- first_name: Anthony
  full_name: Wynshaw-Boris, Anthony
  last_name: Wynshaw-Boris
citation:
  ama: Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. LIS1 determines cleavage plane
    positioning by regulating actomyosin-mediated cell membrane contractility. <i>eLife</i>.
    2020;9. doi:<a href="https://doi.org/10.7554/elife.51512">10.7554/elife.51512</a>
  apa: Moon, H. M., Hippenmeyer, S., Luo, L., &#38; Wynshaw-Boris, A. (2020). LIS1
    determines cleavage plane positioning by regulating actomyosin-mediated cell membrane
    contractility. <i>ELife</i>. eLife Sciences Publications. <a href="https://doi.org/10.7554/elife.51512">https://doi.org/10.7554/elife.51512</a>
  chicago: Moon, Hyang Mi, Simon Hippenmeyer, Liqun Luo, and Anthony Wynshaw-Boris.
    “LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated
    Cell Membrane Contractility.” <i>ELife</i>. eLife Sciences Publications, 2020.
    <a href="https://doi.org/10.7554/elife.51512">https://doi.org/10.7554/elife.51512</a>.
  ieee: H. M. Moon, S. Hippenmeyer, L. Luo, and A. Wynshaw-Boris, “LIS1 determines
    cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility,”
    <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.
  ista: Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. 2020. LIS1 determines cleavage
    plane positioning by regulating actomyosin-mediated cell membrane contractility.
    eLife. 9, 51512.
  mla: Moon, Hyang Mi, et al. “LIS1 Determines Cleavage Plane Positioning by Regulating
    Actomyosin-Mediated Cell Membrane Contractility.” <i>ELife</i>, vol. 9, 51512,
    eLife Sciences Publications, 2020, doi:<a href="https://doi.org/10.7554/elife.51512">10.7554/elife.51512</a>.
  short: H.M. Moon, S. Hippenmeyer, L. Luo, A. Wynshaw-Boris, ELife 9 (2020).
date_created: 2020-03-20T13:16:41Z
date_published: 2020-03-11T00:00:00Z
date_updated: 2023-08-18T07:06:31Z
day: '11'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.7554/elife.51512
external_id:
  isi:
  - '000522835800001'
  pmid:
  - '32159512'
file:
- access_level: open_access
  checksum: 396ceb2dd10b102ef4e699666b9342c3
  content_type: application/pdf
  creator: dernst
  date_created: 2020-09-24T07:03:20Z
  date_updated: 2020-09-24T07:03:20Z
  file_id: '8567'
  file_name: 2020_elife_Moon.pdf
  file_size: 15089438
  relation: main_file
  success: 1
file_date_updated: 2020-09-24T07:03:20Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/751958
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  issn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: LIS1 determines cleavage plane positioning by regulating actomyosin-mediated
  cell membrane contractility
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '7594'
abstract:
- lang: eng
  text: The concept of the entanglement between spin and orbital degrees of freedom
    plays a crucial role in our understanding of various phases and exotic ground
    states in a broad class of materials, including orbitally ordered materials and
    spin liquids. We investigate how the spin-orbital entanglement in a Mott insulator
    depends on the value of the spin-orbit coupling of the relativistic origin. To
    this end, we numerically diagonalize a one-dimensional spin-orbital model with
    Kugel-Khomskii exchange interactions between spins and orbitals on different sites
    supplemented by the on-site spin-orbit coupling. In the regime of small spin-orbit
    coupling with regard to the spin-orbital exchange, the ground state to a large
    extent resembles the one obtained in the limit of vanishing spin-orbit coupling.
    On the other hand, for large spin-orbit coupling the ground state can, depending
    on the model parameters, either still show negligible spin-orbital entanglement
    or evolve to a highly spin-orbitally-entangled phase with completely distinct
    properties that are described by an effective XXZ model. The presented results
    suggest that (i) the spin-orbital entanglement may be induced by large on-site
    spin-orbit coupling, as found in the 5d transition metal oxides, such as the iridates;
    (ii) for Mott insulators with weak spin-orbit coupling of Ising type, such as,
    e.g., the alkali hyperoxides, the effects of the spin-orbit coupling on the ground
    state can, in the first order of perturbation theory, be neglected.
article_number: '013353'
article_processing_charge: No
article_type: original
author:
- first_name: Dorota
  full_name: Gotfryd, Dorota
  last_name: Gotfryd
- first_name: Ekaterina
  full_name: Paerschke, Ekaterina
  id: 8275014E-6063-11E9-9B7F-6338E6697425
  last_name: Paerschke
  orcid: 0000-0003-0853-8182
- first_name: Jiri
  full_name: Chaloupka, Jiri
  last_name: Chaloupka
- first_name: Andrzej M.
  full_name: Oles, Andrzej M.
  last_name: Oles
- first_name: Krzysztof
  full_name: Wohlfeld, Krzysztof
  last_name: Wohlfeld
citation:
  ama: Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. How spin-orbital
    entanglement depends on the spin-orbit coupling in a Mott insulator. <i>Physical
    Review Research</i>. 2020;2(1). doi:<a href="https://doi.org/10.1103/PhysRevResearch.2.013353">10.1103/PhysRevResearch.2.013353</a>
  apa: Gotfryd, D., Paerschke, E., Chaloupka, J., Oles, A. M., &#38; Wohlfeld, K.
    (2020). How spin-orbital entanglement depends on the spin-orbit coupling in a
    Mott insulator. <i>Physical Review Research</i>. American Physical Society. <a
    href="https://doi.org/10.1103/PhysRevResearch.2.013353">https://doi.org/10.1103/PhysRevResearch.2.013353</a>
  chicago: Gotfryd, Dorota, Ekaterina Paerschke, Jiri Chaloupka, Andrzej M. Oles,
    and Krzysztof Wohlfeld. “How Spin-Orbital Entanglement Depends on the Spin-Orbit
    Coupling in a Mott Insulator.” <i>Physical Review Research</i>. American Physical
    Society, 2020. <a href="https://doi.org/10.1103/PhysRevResearch.2.013353">https://doi.org/10.1103/PhysRevResearch.2.013353</a>.
  ieee: D. Gotfryd, E. Paerschke, J. Chaloupka, A. M. Oles, and K. Wohlfeld, “How
    spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator,”
    <i>Physical Review Research</i>, vol. 2, no. 1. American Physical Society, 2020.
  ista: Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. 2020. How spin-orbital
    entanglement depends on the spin-orbit coupling in a Mott insulator. Physical
    Review Research. 2(1), 013353.
  mla: Gotfryd, Dorota, et al. “How Spin-Orbital Entanglement Depends on the Spin-Orbit
    Coupling in a Mott Insulator.” <i>Physical Review Research</i>, vol. 2, no. 1,
    013353, American Physical Society, 2020, doi:<a href="https://doi.org/10.1103/PhysRevResearch.2.013353">10.1103/PhysRevResearch.2.013353</a>.
  short: D. Gotfryd, E. Paerschke, J. Chaloupka, A.M. Oles, K. Wohlfeld, Physical
    Review Research 2 (2020).
date_created: 2020-03-20T15:21:10Z
date_published: 2020-03-20T00:00:00Z
date_updated: 2024-10-21T06:02:21Z
day: '20'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1103/PhysRevResearch.2.013353
ec_funded: 1
file:
- access_level: open_access
  checksum: 1be551fd5f5583635076017d7391ffdc
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-23T10:18:38Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7610'
  file_name: 2020_PhysRevResearch_Gotfryd.pdf
  file_size: 1436735
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '         2'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Physical Review Research
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: How spin-orbital entanglement depends on the spin-orbit coupling in a Mott
  insulator
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2020'
...
---
_id: '7600'
abstract:
- lang: eng
  text: Directional intercellular transport of the phytohormone auxin mediated by
    PIN FORMED (PIN) efflux carriers plays essential roles in both coordinating patterning
    processes and integrating multiple external cues by rapidly redirecting auxin
    fluxes. Multilevel regulations of PIN activity under internal and external cues
    are complicated; however, the underlying molecular mechanism remains elusive.
    Here we demonstrate that 3’-Phosphoinositide-Dependent Protein Kinase1 (PDK1),
    which is conserved in plants and mammals, functions as a molecular hub integrating
    the upstream lipid signalling and the downstream substrate activity through phosphorylation.
    Genetic analysis uncovers that loss-of-function Arabidopsis mutant pdk1.1 pdk1.2
    exhibits a plethora of abnormalities in organogenesis and growth, due to the defective
    PIN-dependent auxin transport. Further cellular and biochemical analyses reveal
    that PDK1 phosphorylates D6 Protein Kinase to facilitate its activity towards
    PIN proteins. Our studies establish a lipid-dependent phosphorylation cascade
    connecting membrane composition-based cellular signalling with plant growth and
    patterning by regulating morphogenetic auxin fluxes.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
article_processing_charge: No
article_type: original
author:
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Wei
  full_name: Kong, Wei
  last_name: Kong
- first_name: Xiao-Li
  full_name: Yang, Xiao-Li
  last_name: Yang
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Zuzana
  full_name: Vondráková, Zuzana
  last_name: Vondráková
- first_name: Roberta
  full_name: Filepová, Roberta
  last_name: Filepová
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Hong-Wei
  full_name: Xue, Hong-Wei
  last_name: Xue
citation:
  ama: Tan S, Zhang X, Kong W, et al. The lipid code-dependent phosphoswitch PDK1–D6PK
    activates PIN-mediated auxin efflux in Arabidopsis. <i>Nature Plants</i>. 2020;6:556-569.
    doi:<a href="https://doi.org/10.1038/s41477-020-0648-9">10.1038/s41477-020-0648-9</a>
  apa: Tan, S., Zhang, X., Kong, W., Yang, X.-L., Molnar, G., Vondráková, Z., … Xue,
    H.-W. (2020). The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated
    auxin efflux in Arabidopsis. <i>Nature Plants</i>. Springer Nature. <a href="https://doi.org/10.1038/s41477-020-0648-9">https://doi.org/10.1038/s41477-020-0648-9</a>
  chicago: Tan, Shutang, Xixi Zhang, Wei Kong, Xiao-Li Yang, Gergely Molnar, Zuzana
    Vondráková, Roberta Filepová, Jan Petrášek, Jiří Friml, and Hong-Wei Xue. “The
    Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates PIN-Mediated Auxin Efflux
    in Arabidopsis.” <i>Nature Plants</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s41477-020-0648-9">https://doi.org/10.1038/s41477-020-0648-9</a>.
  ieee: S. Tan <i>et al.</i>, “The lipid code-dependent phosphoswitch PDK1–D6PK activates
    PIN-mediated auxin efflux in Arabidopsis,” <i>Nature Plants</i>, vol. 6. Springer
    Nature, pp. 556–569, 2020.
  ista: Tan S, Zhang X, Kong W, Yang X-L, Molnar G, Vondráková Z, Filepová R, Petrášek
    J, Friml J, Xue H-W. 2020. The lipid code-dependent phosphoswitch PDK1–D6PK activates
    PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 6, 556–569.
  mla: Tan, Shutang, et al. “The Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates
    PIN-Mediated Auxin Efflux in Arabidopsis.” <i>Nature Plants</i>, vol. 6, Springer
    Nature, 2020, pp. 556–69, doi:<a href="https://doi.org/10.1038/s41477-020-0648-9">10.1038/s41477-020-0648-9</a>.
  short: S. Tan, X. Zhang, W. Kong, X.-L. Yang, G. Molnar, Z. Vondráková, R. Filepová,
    J. Petrášek, J. Friml, H.-W. Xue, Nature Plants 6 (2020) 556–569.
date_created: 2020-03-21T16:34:16Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2026-04-02T11:50:26Z
day: '01'
department:
- _id: JiFr
doi: 10.1038/s41477-020-0648-9
ec_funded: 1
external_id:
  isi:
  - '000531787500006'
  pmid:
  - '32393881'
intvolume: '         6'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/755504
month: '05'
oa: 1
oa_version: Preprint
page: 556-569
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
  grant_number: 723-2015
  name: Molecular Mechanism underlying Salicylic Acid Regulation of Endocytic Trafficking
    in Arabidopsis
publication: Nature Plants
publication_identifier:
  eissn:
  - 2055-0278
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41477-020-0719-y
scopus_import: '1'
status: public
title: The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin
  efflux in Arabidopsis
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 6
year: '2020'
...
---
_id: '7603'
abstract:
- lang: eng
  text: Plants are exposed to a variety of abiotic and biotic stresses that may result
    in DNA damage. Endogenous processes - such as DNA replication, DNA recombination,
    respiration, or photosynthesis - are also a threat to DNA integrity. It is therefore
    essential to understand the strategies plants have developed for DNA damage detection,
    signaling, and repair. Alternative splicing (AS) is a key post-transcriptional
    process with a role in regulation of gene expression. Recent studies demonstrate
    that the majority of intron-containing genes in plants are alternatively spliced,
    highlighting the importance of AS in plant development and stress response. Not
    only does AS ensure a versatile proteome and influence the abundance and availability
    of proteins greatly, it has also emerged as an important player in the DNA damage
    response (DDR) in animals. Despite extensive studies of DDR carried out in plants,
    its regulation at the level of AS has not been comprehensively addressed. Here,
    we provide some insights into the interplay between AS and DDR in plants.
article_number: '91'
article_processing_charge: No
article_type: original
author:
- first_name: Barbara Anna
  full_name: Nimeth, Barbara Anna
  last_name: Nimeth
- first_name: Stefan
  full_name: Riegler, Stefan
  id: FF6018E0-D806-11E9-8E43-0B14E6697425
  last_name: Riegler
  orcid: 0000-0003-3413-1343
- first_name: Maria
  full_name: Kalyna, Maria
  last_name: Kalyna
citation:
  ama: Nimeth BA, Riegler S, Kalyna M. Alternative splicing and DNA damage response
    in plants. <i>Frontiers in Plant Science</i>. 2020;11. doi:<a href="https://doi.org/10.3389/fpls.2020.00091">10.3389/fpls.2020.00091</a>
  apa: Nimeth, B. A., Riegler, S., &#38; Kalyna, M. (2020). Alternative splicing and
    DNA damage response in plants. <i>Frontiers in Plant Science</i>. Frontiers. <a
    href="https://doi.org/10.3389/fpls.2020.00091">https://doi.org/10.3389/fpls.2020.00091</a>
  chicago: Nimeth, Barbara Anna, Stefan Riegler, and Maria Kalyna. “Alternative Splicing
    and DNA Damage Response in Plants.” <i>Frontiers in Plant Science</i>. Frontiers,
    2020. <a href="https://doi.org/10.3389/fpls.2020.00091">https://doi.org/10.3389/fpls.2020.00091</a>.
  ieee: B. A. Nimeth, S. Riegler, and M. Kalyna, “Alternative splicing and DNA damage
    response in plants,” <i>Frontiers in Plant Science</i>, vol. 11. Frontiers, 2020.
  ista: Nimeth BA, Riegler S, Kalyna M. 2020. Alternative splicing and DNA damage
    response in plants. Frontiers in Plant Science. 11, 91.
  mla: Nimeth, Barbara Anna, et al. “Alternative Splicing and DNA Damage Response
    in Plants.” <i>Frontiers in Plant Science</i>, vol. 11, 91, Frontiers, 2020, doi:<a
    href="https://doi.org/10.3389/fpls.2020.00091">10.3389/fpls.2020.00091</a>.
  short: B.A. Nimeth, S. Riegler, M. Kalyna, Frontiers in Plant Science 11 (2020).
date_created: 2020-03-22T23:00:46Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2026-04-16T08:28:17Z
day: '19'
ddc:
- '580'
department:
- _id: FyKo
doi: 10.3389/fpls.2020.00091
external_id:
  isi:
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file:
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  date_created: 2020-03-23T09:03:40Z
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intvolume: '        11'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Frontiers in Plant Science
publication_identifier:
  eissn:
  - 1664-462X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Alternative splicing and DNA damage response in plants
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  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
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type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 11
year: '2020'
...
---
_id: '7605'
abstract:
- lang: eng
  text: 'Union-Find (or Disjoint-Set Union) is one of the fundamental problems in
    computer science; it has been well-studied from both theoretical and practical
    perspectives in the sequential case. Recently, there has been mounting interest
    in analyzing this problem in the concurrent scenario, and several asymptotically-efficient
    algorithms have been proposed. Yet, to date, there is very little known about
    the practical performance of concurrent Union-Find. This work addresses this gap.
    We evaluate and analyze the performance of several concurrent Union-Find algorithms
    and optimization strategies across a wide range of platforms (Intel, AMD, and
    ARM) and workloads (social, random, and road networks, as well as integrations
    into more complex algorithms). We first observe that, due to the limited computational
    cost, the number of induced cache misses is the critical determining factor for
    the performance of existing algorithms. We introduce new techniques to reduce
    this cost by storing node priorities implicitly and by using plain reads and writes
    in a way that does not affect the correctness of the algorithms. Finally, we show
    that Union-Find implementations are an interesting application for Transactional
    Memory (TM): one of the fastest algorithm variants we discovered is a sequential
    one that uses coarse-grained locking with the lock elision optimization to reduce
    synchronization cost and increase scalability. '
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Alexander
  full_name: Fedorov, Alexander
  last_name: Fedorov
- first_name: Nikita
  full_name: Koval, Nikita
  id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
  last_name: Koval
citation:
  ama: 'Alistarh D-A, Fedorov A, Koval N. In search of the fastest concurrent union-find
    algorithm. In: <i>23rd International Conference on Principles of Distributed Systems</i>.
    Vol 153. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020:15:1-15:16. doi:<a
    href="https://doi.org/10.4230/LIPIcs.OPODIS.2019.15">10.4230/LIPIcs.OPODIS.2019.15</a>'
  apa: 'Alistarh, D.-A., Fedorov, A., &#38; Koval, N. (2020). In search of the fastest
    concurrent union-find algorithm. In <i>23rd International Conference on Principles
    of Distributed Systems</i> (Vol. 153, p. 15:1-15:16). Neuchatal, Switzerland:
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.OPODIS.2019.15">https://doi.org/10.4230/LIPIcs.OPODIS.2019.15</a>'
  chicago: Alistarh, Dan-Adrian, Alexander Fedorov, and Nikita Koval. “In Search of
    the Fastest Concurrent Union-Find Algorithm.” In <i>23rd International Conference
    on Principles of Distributed Systems</i>, 153:15:1-15:16. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2020. <a href="https://doi.org/10.4230/LIPIcs.OPODIS.2019.15">https://doi.org/10.4230/LIPIcs.OPODIS.2019.15</a>.
  ieee: D.-A. Alistarh, A. Fedorov, and N. Koval, “In search of the fastest concurrent
    union-find algorithm,” in <i>23rd International Conference on Principles of Distributed
    Systems</i>, Neuchatal, Switzerland, 2020, vol. 153, p. 15:1-15:16.
  ista: 'Alistarh D-A, Fedorov A, Koval N. 2020. In search of the fastest concurrent
    union-find algorithm. 23rd International Conference on Principles of Distributed
    Systems. OPODIS: International Conference on Principles of Distributed Systems,
    LIPIcs, vol. 153, 15:1-15:16.'
  mla: Alistarh, Dan-Adrian, et al. “In Search of the Fastest Concurrent Union-Find
    Algorithm.” <i>23rd International Conference on Principles of Distributed Systems</i>,
    vol. 153, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, p. 15:1-15:16,
    doi:<a href="https://doi.org/10.4230/LIPIcs.OPODIS.2019.15">10.4230/LIPIcs.OPODIS.2019.15</a>.
  short: D.-A. Alistarh, A. Fedorov, N. Koval, in:, 23rd International Conference
    on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2020, p. 15:1-15:16.
conference:
  end_date: 2019-12-19
  location: Neuchatal, Switzerland
  name: 'OPODIS: International Conference on Principles of Distributed Systems'
  start_date: 2019-12-17
corr_author: '1'
date_created: 2020-03-22T23:00:46Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2025-07-10T11:54:46Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.4230/LIPIcs.OPODIS.2019.15
external_id:
  arxiv:
  - '1911.06347'
file:
- access_level: open_access
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  date_updated: 2020-07-14T12:48:01Z
  file_id: '7609'
  file_name: 2019_LIPIcs_Alistarh.pdf
  file_size: 13074131
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file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '       153'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '02'
oa: 1
oa_version: Published Version
page: 15:1-15:16
publication: 23rd International Conference on Principles of Distributed Systems
publication_identifier:
  isbn:
  - '9783959771337'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: In search of the fastest concurrent union-find algorithm
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  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 153
year: '2020'
...
---
_id: '7611'
abstract:
- lang: eng
  text: We consider a system of N bosons in the limit N→∞, interacting through singular
    potentials. For initial data exhibiting Bose–Einstein condensation, the many-body
    time evolution is well approximated through a quadratic fluctuation dynamics around
    a cubic nonlinear Schrödinger equation of the condensate wave function. We show
    that these fluctuations satisfy a (multi-variate) central limit theorem.
acknowledgement: "Simone Rademacher acknowledges partial support from the NCCR SwissMAP.
  This project has received\r\nfunding from the European Union’s Horizon 2020 research
  and innovation program under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411.\r\nOpen
  access funding provided by Institute of Science and Technology (IST Austria).\r\nS.R.
  would like to thank Benjamin Schlein for many fruitful discussions."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Simone Anna Elvira
  full_name: Rademacher, Simone Anna Elvira
  id: 856966FE-A408-11E9-977E-802DE6697425
  last_name: Rademacher
  orcid: 0000-0001-5059-4466
citation:
  ama: Rademacher SAE. Central limit theorem for Bose gases interacting through singular
    potentials. <i>Letters in Mathematical Physics</i>. 2020;110:2143-2174. doi:<a
    href="https://doi.org/10.1007/s11005-020-01286-w">10.1007/s11005-020-01286-w</a>
  apa: Rademacher, S. A. E. (2020). Central limit theorem for Bose gases interacting
    through singular potentials. <i>Letters in Mathematical Physics</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s11005-020-01286-w">https://doi.org/10.1007/s11005-020-01286-w</a>
  chicago: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
    through Singular Potentials.” <i>Letters in Mathematical Physics</i>. Springer
    Nature, 2020. <a href="https://doi.org/10.1007/s11005-020-01286-w">https://doi.org/10.1007/s11005-020-01286-w</a>.
  ieee: S. A. E. Rademacher, “Central limit theorem for Bose gases interacting through
    singular potentials,” <i>Letters in Mathematical Physics</i>, vol. 110. Springer
    Nature, pp. 2143–2174, 2020.
  ista: Rademacher SAE. 2020. Central limit theorem for Bose gases interacting through
    singular potentials. Letters in Mathematical Physics. 110, 2143–2174.
  mla: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
    through Singular Potentials.” <i>Letters in Mathematical Physics</i>, vol. 110,
    Springer Nature, 2020, pp. 2143–74, doi:<a href="https://doi.org/10.1007/s11005-020-01286-w">10.1007/s11005-020-01286-w</a>.
  short: S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.
corr_author: '1'
date_created: 2020-03-23T11:11:47Z
date_published: 2020-03-12T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '12'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s11005-020-01286-w
ec_funded: 1
external_id:
  isi:
  - '000551556000006'
file:
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  date_created: 2020-11-20T12:04:26Z
  date_updated: 2020-11-20T12:04:26Z
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  file_size: 478683
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  success: 1
file_date_updated: 2020-11-20T12:04:26Z
has_accepted_license: '1'
intvolume: '       110'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 2143-2174
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_identifier:
  eissn:
  - 1573-0530
  issn:
  - 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Central limit theorem for Bose gases interacting through singular potentials
tmp:
  image: /images/cc_by.png
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type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 110
year: '2020'
...
