---
_id: '7623'
abstract:
- lang: eng
  text: A two-dimensional mathematical model for cells migrating without adhesion
    capabilities is presented and analyzed. Cells are represented by their cortex,
    which is modeled as an elastic curve, subject to an internal pressure force. Net
    polymerization or depolymerization in the cortex is modeled via local addition
    or removal of material, driving a cortical flow. The model takes the form of a
    fully nonlinear degenerate parabolic system. An existence analysis is carried
    out by adapting ideas from the theory of gradient flows. Numerical simulations
    show that these simple rules can account for the behavior observed in experiments,
    suggesting a possible mechanical mechanism for adhesion-independent motility.
acknowledgement: This work has been supported by the Vienna Science and Technology
  Fund, Grant no. LS13-029. G.J. and C.S. also acknowledge support by the Austrian
  Science Fund, Grants no. W1245, F 65, and W1261, as well as by the Fondation Sciences
  Mathématiques de Paris, and by Paris-Sciences-et-Lettres.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Gaspard
  full_name: Jankowiak, Gaspard
  last_name: Jankowiak
- first_name: Diane
  full_name: Peurichard, Diane
  last_name: Peurichard
- first_name: Anne
  full_name: Reversat, Anne
  id: 35B76592-F248-11E8-B48F-1D18A9856A87
  last_name: Reversat
  orcid: 0000-0003-0666-8928
- first_name: Christian
  full_name: Schmeiser, Christian
  last_name: Schmeiser
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. Modeling adhesion-independent
    cell migration. <i>Mathematical Models and Methods in Applied Sciences</i>. 2020;30(3):513-537.
    doi:<a href="https://doi.org/10.1142/S021820252050013X">10.1142/S021820252050013X</a>
  apa: Jankowiak, G., Peurichard, D., Reversat, A., Schmeiser, C., &#38; Sixt, M.
    K. (2020). Modeling adhesion-independent cell migration. <i>Mathematical Models
    and Methods in Applied Sciences</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/S021820252050013X">https://doi.org/10.1142/S021820252050013X</a>
  chicago: Jankowiak, Gaspard, Diane Peurichard, Anne Reversat, Christian Schmeiser,
    and Michael K Sixt. “Modeling Adhesion-Independent Cell Migration.” <i>Mathematical
    Models and Methods in Applied Sciences</i>. World Scientific Publishing, 2020.
    <a href="https://doi.org/10.1142/S021820252050013X">https://doi.org/10.1142/S021820252050013X</a>.
  ieee: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, and M. K. Sixt, “Modeling
    adhesion-independent cell migration,” <i>Mathematical Models and Methods in Applied
    Sciences</i>, vol. 30, no. 3. World Scientific Publishing, pp. 513–537, 2020.
  ista: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. 2020. Modeling
    adhesion-independent cell migration. Mathematical Models and Methods in Applied
    Sciences. 30(3), 513–537.
  mla: Jankowiak, Gaspard, et al. “Modeling Adhesion-Independent Cell Migration.”
    <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 30, no. 3, World
    Scientific Publishing, 2020, pp. 513–37, doi:<a href="https://doi.org/10.1142/S021820252050013X">10.1142/S021820252050013X</a>.
  short: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, M.K. Sixt, Mathematical
    Models and Methods in Applied Sciences 30 (2020) 513–537.
date_created: 2020-03-31T11:25:05Z
date_published: 2020-03-18T00:00:00Z
date_updated: 2026-04-16T09:35:31Z
day: '18'
department:
- _id: MiSi
doi: 10.1142/S021820252050013X
external_id:
  arxiv:
  - '1903.09426'
  isi:
  - '000525349900003'
intvolume: '        30'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1903.09426
month: '03'
oa: 1
oa_version: Preprint
page: 513-537
project:
- _id: 25AD6156-B435-11E9-9278-68D0E5697425
  grant_number: LS13-029
  name: Modeling of Polarization and Motility of Leukocytes in Three-Dimensional Environments
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
  issn:
  - 0218-2025
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modeling adhesion-independent cell migration
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 30
year: '2020'
...
---
OA_place: publisher
_id: '7629'
abstract:
- lang: eng
  text: "This thesis is based on three main topics: In the first part, we study convergence
    of discrete gradient flow structures associated with regular finite-volume discretisations
    of Fokker-Planck equations. We show evolutionary I convergence of the discrete
    gradient flows to the L2-Wasserstein gradient flow corresponding to the solution
    of a Fokker-Planck\r\nequation in arbitrary dimension d >= 1. Along the argument,
    we prove Mosco- and I-convergence results for discrete energy functionals, which
    are of independent interest for convergence of equivalent gradient flow structures
    in Hilbert spaces.\r\nThe second part investigates L2-Wasserstein flows on metric
    graph. The starting point is a Benamou-Brenier formula for the L2-Wasserstein
    distance, which is proved via a regularisation scheme for solutions of the continuity
    equation, adapted to the peculiar geometric structure of metric graphs. Based
    on those results, we show that the L2-Wasserstein space over a metric graph admits
    a gradient flow which may be identified as a solution of a Fokker-Planck equation.\r\nIn
    the third part, we focus again on the discrete gradient flows, already encountered
    in the first part. We propose a variational structure which extends the gradient
    flow structure to Markov chains violating the detailed-balance conditions. Using
    this structure, we characterise contraction estimates for the discrete heat flow
    in terms of convexity of\r\ncorresponding path-dependent energy functionals. In
    addition, we use this approach to derive several functional inequalities for said
    functionals."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Dominik L
  full_name: Forkert, Dominik L
  id: 35C79D68-F248-11E8-B48F-1D18A9856A87
  last_name: Forkert
citation:
  ama: Forkert DL. Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains. 2020. doi:<a href="https://doi.org/10.15479/AT:ISTA:7629">10.15479/AT:ISTA:7629</a>
  apa: Forkert, D. L. (2020). <i>Gradient flows in spaces of probability measures
    for finite-volume schemes, metric graphs and non-reversible Markov chains</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:7629">https://doi.org/10.15479/AT:ISTA:7629</a>
  chicago: Forkert, Dominik L. “Gradient Flows in Spaces of Probability Measures for
    Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains.” Institute
    of Science and Technology Austria, 2020. <a href="https://doi.org/10.15479/AT:ISTA:7629">https://doi.org/10.15479/AT:ISTA:7629</a>.
  ieee: D. L. Forkert, “Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains,” Institute of Science
    and Technology Austria, 2020.
  ista: Forkert DL. 2020. Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains. Institute of Science
    and Technology Austria.
  mla: Forkert, Dominik L. <i>Gradient Flows in Spaces of Probability Measures for
    Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains</i>. Institute
    of Science and Technology Austria, 2020, doi:<a href="https://doi.org/10.15479/AT:ISTA:7629">10.15479/AT:ISTA:7629</a>.
  short: D.L. Forkert, Gradient Flows in Spaces of Probability Measures for Finite-Volume
    Schemes, Metric Graphs and Non-Reversible Markov Chains, Institute of Science
    and Technology Austria, 2020.
corr_author: '1'
date_created: 2020-04-02T06:40:23Z
date_published: 2020-03-31T00:00:00Z
date_updated: 2026-04-08T07:22:00Z
day: '31'
ddc:
- '510'
degree_awarded: PhD
department:
- _id: JaMa
doi: 10.15479/AT:ISTA:7629
ec_funded: 1
file:
- access_level: open_access
  checksum: c814a1a6195269ca6fe48b0dca45ae8a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T10:47:59Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7657'
  file_name: Thesis_Forkert_PDFA.pdf
  file_size: 3297129
  relation: main_file
- access_level: closed
  checksum: ceafb53f923d1b5bdf14b2b0f22e4a81
  content_type: application/x-zip-compressed
  creator: dernst
  date_created: 2020-04-14T10:47:59Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7658'
  file_name: Thesis_Forkert_source.zip
  file_size: 1063908
  relation: source_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '154'
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
title: Gradient flows in spaces of probability measures for finite-volume schemes,
  metric graphs and non-reversible Markov chains
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2020'
...
---
_id: '7632'
abstract:
- lang: eng
  text: The posterior parietal cortex (PPC) and frontal motor areas comprise a cortical
    network supporting goal-directed behaviour, with functions including sensorimotor
    transformations and decision making. In primates, this network links performed
    and observed actions via mirror neurons, which fire both when individuals perform
    an action and when they observe the same action performed by a conspecific. Mirror
    neurons are believed to be important for social learning, but it is not known
    whether mirror-like neurons occur in similar networks in other social species,
    such as rodents, or if they can be measured in such models using paradigms where
    observers passively view a demonstrator. Therefore, we imaged Ca2+ responses in
    PPC and secondary motor cortex (M2) while mice performed and observed pellet-reaching
    and wheel-running tasks, and found that cell populations in both areas robustly
    encoded several naturalistic behaviours. However, neural responses to the same
    set of observed actions were absent, although we verified that observer mice were
    attentive to performers and that PPC neurons responded reliably to visual cues.
    Statistical modelling also indicated that executed actions outperformed observed
    actions in predicting neural responses. These results raise the possibility that
    sensorimotor action recognition in rodents could take place outside of the parieto-frontal
    circuit, and underscore that detecting socially-driven neural coding depends critically
    on the species and behavioural paradigm used.
article_number: '5559'
article_processing_charge: No
article_type: original
author:
- first_name: Tuce
  full_name: Tombaz, Tuce
  last_name: Tombaz
- first_name: Benjamin A.
  full_name: Dunn, Benjamin A.
  last_name: Dunn
- first_name: Karoline
  full_name: Hovde, Karoline
  last_name: Hovde
- first_name: Ryan J
  full_name: Cubero, Ryan J
  id: 850B2E12-9CD4-11E9-837F-E719E6697425
  last_name: Cubero
  orcid: 0000-0003-0002-1867
- first_name: Bartul
  full_name: Mimica, Bartul
  last_name: Mimica
- first_name: Pranav
  full_name: Mamidanna, Pranav
  last_name: Mamidanna
- first_name: Yasser
  full_name: Roudi, Yasser
  last_name: Roudi
- first_name: Jonathan R.
  full_name: Whitlock, Jonathan R.
  last_name: Whitlock
citation:
  ama: Tombaz T, Dunn BA, Hovde K, et al. Action representation in the mouse parieto-frontal
    network. <i>Scientific reports</i>. 2020;10(1). doi:<a href="https://doi.org/10.1038/s41598-020-62089-6">10.1038/s41598-020-62089-6</a>
  apa: Tombaz, T., Dunn, B. A., Hovde, K., Cubero, R. J., Mimica, B., Mamidanna, P.,
    … Whitlock, J. R. (2020). Action representation in the mouse parieto-frontal network.
    <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-020-62089-6">https://doi.org/10.1038/s41598-020-62089-6</a>
  chicago: Tombaz, Tuce, Benjamin A. Dunn, Karoline Hovde, Ryan J Cubero, Bartul Mimica,
    Pranav Mamidanna, Yasser Roudi, and Jonathan R. Whitlock. “Action Representation
    in the Mouse Parieto-Frontal Network.” <i>Scientific Reports</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1038/s41598-020-62089-6">https://doi.org/10.1038/s41598-020-62089-6</a>.
  ieee: T. Tombaz <i>et al.</i>, “Action representation in the mouse parieto-frontal
    network,” <i>Scientific reports</i>, vol. 10, no. 1. Springer Nature, 2020.
  ista: Tombaz T, Dunn BA, Hovde K, Cubero RJ, Mimica B, Mamidanna P, Roudi Y, Whitlock
    JR. 2020. Action representation in the mouse parieto-frontal network. Scientific
    reports. 10(1), 5559.
  mla: Tombaz, Tuce, et al. “Action Representation in the Mouse Parieto-Frontal Network.”
    <i>Scientific Reports</i>, vol. 10, no. 1, 5559, Springer Nature, 2020, doi:<a
    href="https://doi.org/10.1038/s41598-020-62089-6">10.1038/s41598-020-62089-6</a>.
  short: T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y.
    Roudi, J.R. Whitlock, Scientific Reports 10 (2020).
date_created: 2020-04-05T22:00:47Z
date_published: 2020-03-27T00:00:00Z
date_updated: 2026-04-02T14:23:52Z
day: '27'
ddc:
- '570'
department:
- _id: SaSi
doi: 10.1038/s41598-020-62089-6
external_id:
  isi:
  - '000560406800007'
file:
- access_level: open_access
  checksum: e6cfaaaf7986532132934400038b824a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-06T10:44:23Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7644'
  file_name: 2020_ScientificReports_Tombaz.pdf
  file_size: 2621249
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Scientific reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Action representation in the mouse parieto-frontal network
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 10
year: '2020'
...
---
OA_place: publisher
OA_type: free access
_id: '7635'
abstract:
- lang: eng
  text: Concurrent programming can be notoriously complex and error-prone. Programming
    bugs can arise from a variety of sources, such as operation re-reordering, or
    incomplete understanding of the memory model. A variety of formal and model checking
    methods have been developed to address this fundamental difficulty. While technically
    interesting, existing academic methods are still hard to apply to the large codebases
    typical of industrial deployments, which limits their practical impact.
article_processing_charge: No
author:
- first_name: Nikita
  full_name: Koval, Nikita
  id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
  last_name: Koval
- first_name: Mariia
  full_name: Sokolova, Mariia
  id: 26217AE4-77FF-11EA-8101-AD24D49E41F4
  last_name: Sokolova
- first_name: Alexander
  full_name: Fedorov, Alexander
  last_name: Fedorov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Dmitry
  full_name: Tsitelov, Dmitry
  last_name: Tsitelov
citation:
  ama: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. Testing concurrency
    on the JVM with Lincheck. In: <i>Proceedings of the ACM SIGPLAN Symposium on Principles
    and Practice of Parallel Programming</i>. Association for Computing Machinery;
    2020:423-424. doi:<a href="https://doi.org/10.1145/3332466.3374503">10.1145/3332466.3374503</a>'
  apa: 'Koval, N., Sokolova, M., Fedorov, A., Alistarh, D.-A., &#38; Tsitelov, D.
    (2020). Testing concurrency on the JVM with Lincheck. In <i>Proceedings of the
    ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i> (pp.
    423–424). San Diego, CA, United States: Association for Computing Machinery. <a
    href="https://doi.org/10.1145/3332466.3374503">https://doi.org/10.1145/3332466.3374503</a>'
  chicago: Koval, Nikita, Mariia Sokolova, Alexander Fedorov, Dan-Adrian Alistarh,
    and Dmitry Tsitelov. “Testing Concurrency on the JVM with Lincheck.” In <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>,
    423–24. Association for Computing Machinery, 2020. <a href="https://doi.org/10.1145/3332466.3374503">https://doi.org/10.1145/3332466.3374503</a>.
  ieee: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, and D. Tsitelov, “Testing
    concurrency on the JVM with Lincheck,” in <i>Proceedings of the ACM SIGPLAN Symposium
    on Principles and Practice of Parallel Programming</i>, San Diego, CA, United
    States, 2020, pp. 423–424.
  ista: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. 2020. Testing concurrency
    on the JVM with Lincheck. Proceedings of the ACM SIGPLAN Symposium on Principles
    and Practice of Parallel Programming. PPOPP: Principles and Practice of Parallel
    Programming, 423–424.'
  mla: Koval, Nikita, et al. “Testing Concurrency on the JVM with Lincheck.” <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>,
    Association for Computing Machinery, 2020, pp. 423–24, doi:<a href="https://doi.org/10.1145/3332466.3374503">10.1145/3332466.3374503</a>.
  short: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
    Association for Computing Machinery, 2020, pp. 423–424.
conference:
  end_date: 2020-02-26
  location: San Diego, CA, United States
  name: 'PPOPP: Principles and Practice of Parallel Programming'
  start_date: 2020-02-22
date_created: 2020-04-05T22:00:48Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2026-06-18T19:24:47Z
day: '19'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.1145/3332466.3374503
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3332466.3374503
month: '02'
oa: 1
oa_version: Published Version
page: 423-424
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
  Parallel Programming
publication_identifier:
  isbn:
  - '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Testing concurrency on the JVM with Lincheck
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7637'
abstract:
- lang: eng
  text: The evolution of finitely many particles obeying Langevin dynamics is described
    by Dean–Kawasaki equations, a class of stochastic equations featuring a non-Lipschitz
    multiplicative noise in divergence form. We derive a regularised Dean–Kawasaki
    model based on second order Langevin dynamics by analysing a system of particles
    interacting via a pairwise potential. Key tools of our analysis are the propagation
    of chaos and Simon's compactness criterion. The model we obtain is a small-noise
    stochastic perturbation of the undamped McKean–Vlasov equation. We also provide
    a high-probability result for existence and uniqueness for our model.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Federico
  full_name: Cornalba, Federico
  id: 2CEB641C-A400-11E9-A717-D712E6697425
  last_name: Cornalba
  orcid: 0000-0002-6269-5149
- first_name: Tony
  full_name: Shardlow, Tony
  last_name: Shardlow
- first_name: Johannes
  full_name: Zimmer, Johannes
  last_name: Zimmer
citation:
  ama: Cornalba F, Shardlow T, Zimmer J. From weakly interacting particles to a regularised
    Dean-Kawasaki model. <i>Nonlinearity</i>. 2020;33(2):864-891. doi:<a href="https://doi.org/10.1088/1361-6544/ab5174">10.1088/1361-6544/ab5174</a>
  apa: Cornalba, F., Shardlow, T., &#38; Zimmer, J. (2020). From weakly interacting
    particles to a regularised Dean-Kawasaki model. <i>Nonlinearity</i>. IOP Publishing.
    <a href="https://doi.org/10.1088/1361-6544/ab5174">https://doi.org/10.1088/1361-6544/ab5174</a>
  chicago: Cornalba, Federico, Tony Shardlow, and Johannes Zimmer. “From Weakly Interacting
    Particles to a Regularised Dean-Kawasaki Model.” <i>Nonlinearity</i>. IOP Publishing,
    2020. <a href="https://doi.org/10.1088/1361-6544/ab5174">https://doi.org/10.1088/1361-6544/ab5174</a>.
  ieee: F. Cornalba, T. Shardlow, and J. Zimmer, “From weakly interacting particles
    to a regularised Dean-Kawasaki model,” <i>Nonlinearity</i>, vol. 33, no. 2. IOP
    Publishing, pp. 864–891, 2020.
  ista: Cornalba F, Shardlow T, Zimmer J. 2020. From weakly interacting particles
    to a regularised Dean-Kawasaki model. Nonlinearity. 33(2), 864–891.
  mla: Cornalba, Federico, et al. “From Weakly Interacting Particles to a Regularised
    Dean-Kawasaki Model.” <i>Nonlinearity</i>, vol. 33, no. 2, IOP Publishing, 2020,
    pp. 864–91, doi:<a href="https://doi.org/10.1088/1361-6544/ab5174">10.1088/1361-6544/ab5174</a>.
  short: F. Cornalba, T. Shardlow, J. Zimmer, Nonlinearity 33 (2020) 864–891.
date_created: 2020-04-05T22:00:49Z
date_published: 2020-01-10T00:00:00Z
date_updated: 2026-04-02T14:26:08Z
day: '10'
department:
- _id: JuFi
doi: 10.1088/1361-6544/ab5174
external_id:
  arxiv:
  - '1811.06448'
  isi:
  - '000508175400001'
intvolume: '        33'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1811.06448
month: '01'
oa: 1
oa_version: Preprint
page: 864-891
publication: Nonlinearity
publication_identifier:
  eissn:
  - 1361-6544
  issn:
  - 0951-7715
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: From weakly interacting particles to a regularised Dean-Kawasaki model
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 33
year: '2020'
...
---
_id: '7638'
abstract:
- lang: eng
  text: Following on from our recent work, we investigate a stochastic approach to
    non-equilibrium quantum spin systems. We show how the method can be applied to
    a variety of physical observables and for different initial conditions. We provide
    exact formulae of broad applicability for the time-dependence of expectation values
    and correlation functions following a quantum quench in terms of averages over
    classical stochastic processes. We further explore the behavior of the classical
    stochastic variables in the presence of dynamical quantum phase transitions, including
    results for their distributions and correlation functions. We provide details
    on the numerical solution of the associated stochastic differential equations,
    and examine the growth of fluctuations in the classical description. We discuss
    the strengths and limitations of the current implementation of the stochastic
    approach and the potential for further development.
article_number: '013106'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stefano
  full_name: De Nicola, Stefano
  id: 42832B76-F248-11E8-B48F-1D18A9856A87
  last_name: De Nicola
  orcid: 0000-0002-4842-6671
- first_name: B.
  full_name: Doyon, B.
  last_name: Doyon
- first_name: M. J.
  full_name: Bhaseen, M. J.
  last_name: Bhaseen
citation:
  ama: 'De Nicola S, Doyon B, Bhaseen MJ. Non-equilibrium quantum spin dynamics from
    classical stochastic processes. <i>Journal of Statistical Mechanics: Theory and
    Experiment</i>. 2020;2020(1). doi:<a href="https://doi.org/10.1088/1742-5468/ab6093">10.1088/1742-5468/ab6093</a>'
  apa: 'De Nicola, S., Doyon, B., &#38; Bhaseen, M. J. (2020). Non-equilibrium quantum
    spin dynamics from classical stochastic processes. <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>. IOP Publishing. <a href="https://doi.org/10.1088/1742-5468/ab6093">https://doi.org/10.1088/1742-5468/ab6093</a>'
  chicago: 'De Nicola, Stefano, B. Doyon, and M. J. Bhaseen. “Non-Equilibrium Quantum
    Spin Dynamics from Classical Stochastic Processes.” <i>Journal of Statistical
    Mechanics: Theory and Experiment</i>. IOP Publishing, 2020. <a href="https://doi.org/10.1088/1742-5468/ab6093">https://doi.org/10.1088/1742-5468/ab6093</a>.'
  ieee: 'S. De Nicola, B. Doyon, and M. J. Bhaseen, “Non-equilibrium quantum spin
    dynamics from classical stochastic processes,” <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>, vol. 2020, no. 1. IOP Publishing, 2020.'
  ista: 'De Nicola S, Doyon B, Bhaseen MJ. 2020. Non-equilibrium quantum spin dynamics
    from classical stochastic processes. Journal of Statistical Mechanics: Theory
    and Experiment. 2020(1), 013106.'
  mla: 'De Nicola, Stefano, et al. “Non-Equilibrium Quantum Spin Dynamics from Classical
    Stochastic Processes.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>,
    vol. 2020, no. 1, 013106, IOP Publishing, 2020, doi:<a href="https://doi.org/10.1088/1742-5468/ab6093">10.1088/1742-5468/ab6093</a>.'
  short: 'S. De Nicola, B. Doyon, M.J. Bhaseen, Journal of Statistical Mechanics:
    Theory and Experiment 2020 (2020).'
corr_author: '1'
date_created: 2020-04-05T22:00:50Z
date_published: 2020-01-22T00:00:00Z
date_updated: 2026-04-02T14:33:33Z
day: '22'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1088/1742-5468/ab6093
ec_funded: 1
external_id:
  arxiv:
  - '1909.13142'
  isi:
  - '000520187500001'
file:
- access_level: open_access
  checksum: 4030e683c15d30b7b4794ec7dc1b6537
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-06T13:15:49Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7648'
  file_name: 2020_JournStatisticalMech_DeNicola.pdf
  file_size: 3159026
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '      2020'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: 'Journal of Statistical Mechanics: Theory and Experiment'
publication_identifier:
  eissn:
  - 1742-5468
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-equilibrium quantum spin dynamics from classical stochastic processes
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 2020
year: '2020'
...
---
_id: '7646'
abstract:
- lang: eng
  text: In plant cells, environmental stressors promote changes in connectivity between
    the cortical ER and the PM. Although this process is tightly regulated in space
    and time, the molecular signals and structural components mediating these changes
    in inter-organelle communication are only starting to be characterized. In this
    report, we confirm the presence of a putative tethering complex containing the
    synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein
    1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow
    responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent
    rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+)
    rare earth elements (REEs). Although REEs are generally used as non-selective
    cation channel blockers at the PM, here we show that the slow internalization
    of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular
    signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the
    PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes.
    We propose that the observed EPCS rearrangements act as a slow adaptive response
    to sustained stress conditions, and that this process involves the accumulation
    of stress-specific phosphoinositides species at the PM.
article_processing_charge: No
article_type: original
author:
- first_name: E
  full_name: Lee, E
  last_name: Lee
- first_name: B
  full_name: Vila Nova Santana, B
  last_name: Vila Nova Santana
- first_name: E
  full_name: Samuels, E
  last_name: Samuels
- first_name: F
  full_name: Benitez-Fuente, F
  last_name: Benitez-Fuente
- first_name: E
  full_name: Corsi, E
  last_name: Corsi
- first_name: MA
  full_name: Botella, MA
  last_name: Botella
- first_name: J
  full_name: Perez-Sancho, J
  last_name: Perez-Sancho
- first_name: S
  full_name: Vanneste, S
  last_name: Vanneste
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: A
  full_name: Macho, A
  last_name: Macho
- first_name: A
  full_name: Alves Azevedo, A
  last_name: Alves Azevedo
- first_name: A
  full_name: Rosado, A
  last_name: Rosado
citation:
  ama: Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent
    and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
    Arabidopsis. <i>Journal of Experimental Botany</i>. 2020;71(14):3986–3998. doi:<a
    href="https://doi.org/10.1093/jxb/eraa138">10.1093/jxb/eraa138</a>
  apa: Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E.,
    Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent
    and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
    Arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a
    href="https://doi.org/10.1093/jxb/eraa138">https://doi.org/10.1093/jxb/eraa138</a>
  chicago: Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella,
    J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and
    PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.”
    <i>Journal of Experimental Botany</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1093/jxb/eraa138">https://doi.org/10.1093/jxb/eraa138</a>.
  ieee: E. Lee <i>et al.</i>, “Rare earth elements induce cytoskeleton-dependent and
    PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,”
    <i>Journal of Experimental Botany</i>, vol. 71, no. 14. Oxford University Press,
    pp. 3986–3998, 2020.
  ista: Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella
    M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020.
    Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
    of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental
    Botany. 71(14), 3986–3998.
  mla: Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated
    Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal
    of Experimental Botany</i>, vol. 71, no. 14, Oxford University Press, 2020, pp.
    3986–3998, doi:<a href="https://doi.org/10.1093/jxb/eraa138">10.1093/jxb/eraa138</a>.
  short: E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M.
    Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A.
    Rosado, Journal of Experimental Botany 71 (2020) 3986–3998.
date_created: 2020-04-06T10:57:08Z
date_published: 2020-07-06T00:00:00Z
date_updated: 2024-10-21T06:02:26Z
day: '06'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1093/jxb/eraa138
external_id:
  isi:
  - '000553125400007'
  pmid:
  - '32179893'
file:
- access_level: open_access
  checksum: b06aaaa93dc41896da805fe4b75cf3a1
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-06T07:41:35Z
  date_updated: 2020-10-06T07:41:35Z
  file_id: '8613'
  file_name: 2020_JourExperimBotany_Lee.pdf
  file_size: 1916031
  relation: main_file
  success: 1
file_date_updated: 2020-10-06T07:41:35Z
has_accepted_license: '1'
intvolume: '        71'
isi: 1
issue: '14'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 3986–3998
pmid: 1
publication: Journal of Experimental Botany
publication_identifier:
  eissn:
  - 1460-2431
  issn:
  - 0022-0957
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
  of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 71
year: '2020'
...
---
_id: '7650'
abstract:
- lang: eng
  text: We consider a dilute, homogeneous Bose gas at positive temperature. The system
    is investigated in the Gross–Pitaevskii limit, where the scattering length a is
    so small that the interaction energy is of the same order of magnitude as the
    spectral gap of the Laplacian, and for temperatures that are comparable to the
    critical temperature of the ideal gas. We show that the difference between the
    specific free energy of the interacting system and the one of the ideal gas is
    to leading order given by 4πa(2ϱ2−ϱ20). Here ϱ denotes the density of the system
    and ϱ0 is the expected condensate density of the ideal gas. Additionally, we show
    that the one-particle density matrix of any approximate minimizer of the Gibbs
    free energy functional is to leading order given by the one of the ideal gas.
    This in particular proves Bose–Einstein condensation with critical temperature
    given by the one of the ideal gas to leading order. One key ingredient of our
    proof is a novel use of the Gibbs variational principle that goes hand in hand
    with the c-number substitution.
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria). It is a pleasure to thank Jakob Yngvason for helpful discussions.
  Financial support by the European Research Council (ERC) under the European Union’sHorizon
  2020 research and innovation programme (Grant Agreement No. 694227) is gratefully
  acknowledged. A. D. acknowledges funding from the European Union’s Horizon 2020
  research and innovation programme under the Marie Sklodowska-Curie Grant Agreement
  No. 836146.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Andreas
  full_name: Deuchert, Andreas
  id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
  last_name: Deuchert
  orcid: 0000-0003-3146-6746
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Deuchert A, Seiringer R. Gross-Pitaevskii limit of a homogeneous Bose gas at
    positive temperature. <i>Archive for Rational Mechanics and Analysis</i>. 2020;236(6):1217-1271.
    doi:<a href="https://doi.org/10.1007/s00205-020-01489-4">10.1007/s00205-020-01489-4</a>
  apa: Deuchert, A., &#38; Seiringer, R. (2020). Gross-Pitaevskii limit of a homogeneous
    Bose gas at positive temperature. <i>Archive for Rational Mechanics and Analysis</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00205-020-01489-4">https://doi.org/10.1007/s00205-020-01489-4</a>
  chicago: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
    Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1007/s00205-020-01489-4">https://doi.org/10.1007/s00205-020-01489-4</a>.
  ieee: A. Deuchert and R. Seiringer, “Gross-Pitaevskii limit of a homogeneous Bose
    gas at positive temperature,” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 236, no. 6. Springer Nature, pp. 1217–1271, 2020.
  ista: Deuchert A, Seiringer R. 2020. Gross-Pitaevskii limit of a homogeneous Bose
    gas at positive temperature. Archive for Rational Mechanics and Analysis. 236(6),
    1217–1271.
  mla: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
    Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 236, no. 6, Springer Nature, 2020, pp. 1217–71, doi:<a href="https://doi.org/10.1007/s00205-020-01489-4">10.1007/s00205-020-01489-4</a>.
  short: A. Deuchert, R. Seiringer, Archive for Rational Mechanics and Analysis 236
    (2020) 1217–1271.
corr_author: '1'
date_created: 2020-04-08T15:18:03Z
date_published: 2020-03-09T00:00:00Z
date_updated: 2025-04-14T07:27:00Z
day: '09'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00205-020-01489-4
ec_funded: 1
external_id:
  arxiv:
  - '1901.11363'
  isi:
  - '000519415000001'
file:
- access_level: open_access
  checksum: b645fb64bfe95bbc05b3eea374109a9c
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T13:17:42Z
  date_updated: 2020-11-20T13:17:42Z
  file_id: '8785'
  file_name: 2020_ArchRatMechanicsAnalysis_Deuchert.pdf
  file_size: 704633
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T13:17:42Z
has_accepted_license: '1'
intvolume: '       236'
isi: 1
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1217-1271
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
  eissn:
  - 1432-0673
  issn:
  - 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 236
year: '2020'
...
---
_id: '7656'
abstract:
- lang: eng
  text: 'We propose that correlations among neurons are generically strong enough
    to organize neural activity patterns into a discrete set of clusters, which can
    each be viewed as a population codeword. Our reasoning starts with the analysis
    of retinal ganglion cell data using maximum entropy models, showing that the population
    is robustly in a frustrated, marginally sub-critical, or glassy, state. This leads
    to an argument that neural populations in many other brain areas might share this
    structure. Next, we use latent variable models to show that this glassy state
    possesses well-defined clusters of neural activity. Clusters have three appealing
    properties: (i) clusters exhibit error correction, i.e., they are reproducibly
    elicited by the same stimulus despite variability at the level of constituent
    neurons; (ii) clusters encode qualitatively different visual features than their
    constituent neurons; and (iii) clusters can be learned by downstream neural circuits
    in an unsupervised fashion. We hypothesize that these properties give rise to
    a “learnable” neural code which the cortical hierarchy uses to extract increasingly
    complex features without supervision or reinforcement.'
article_number: '20'
article_processing_charge: No
article_type: original
author:
- first_name: Michael J.
  full_name: Berry, Michael J.
  last_name: Berry
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: 'Berry MJ, Tkačik G. Clustering of neural activity: A design principle for
    population codes. <i>Frontiers in Computational Neuroscience</i>. 2020;14. doi:<a
    href="https://doi.org/10.3389/fncom.2020.00020">10.3389/fncom.2020.00020</a>'
  apa: 'Berry, M. J., &#38; Tkačik, G. (2020). Clustering of neural activity: A design
    principle for population codes. <i>Frontiers in Computational Neuroscience</i>.
    Frontiers. <a href="https://doi.org/10.3389/fncom.2020.00020">https://doi.org/10.3389/fncom.2020.00020</a>'
  chicago: 'Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity:
    A Design Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>.
    Frontiers, 2020. <a href="https://doi.org/10.3389/fncom.2020.00020">https://doi.org/10.3389/fncom.2020.00020</a>.'
  ieee: 'M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle
    for population codes,” <i>Frontiers in Computational Neuroscience</i>, vol. 14.
    Frontiers, 2020.'
  ista: 'Berry MJ, Tkačik G. 2020. Clustering of neural activity: A design principle
    for population codes. Frontiers in Computational Neuroscience. 14, 20.'
  mla: 'Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design
    Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>,
    vol. 14, 20, Frontiers, 2020, doi:<a href="https://doi.org/10.3389/fncom.2020.00020">10.3389/fncom.2020.00020</a>.'
  short: M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020).
date_created: 2020-04-12T22:00:40Z
date_published: 2020-03-13T00:00:00Z
date_updated: 2026-04-16T08:28:50Z
day: '13'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.3389/fncom.2020.00020
external_id:
  isi:
  - '000525543200001'
  pmid:
  - '32231528'
file:
- access_level: open_access
  checksum: 2b1da23823eae9cedbb42d701945b61e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T12:20:39Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7659'
  file_name: 2020_Frontiers_Berry.pdf
  file_size: 4082937
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Computational Neuroscience
publication_identifier:
  eissn:
  - 1662-5188
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Clustering of neural activity: A design principle for population codes'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 14
year: '2020'
...
---
_id: '7663'
abstract:
- lang: eng
  text: Wood, as the most abundant carbon dioxide storing bioresource, is currently
    driven beyond its traditional use through creative innovations and nanotechnology.
    For many properties the micro- and nanostructure plays a crucial role and one
    key challenge is control and detection of chemical and physical processes in the
    confined microstructure and nanopores of the wooden cell wall. In this study,
    correlative Raman and atomic force microscopy show high potential for tracking
    in situ molecular rearrangement of wood polymers during compression. More water
    molecules (interpreted as wider cellulose microfibril distances) and disentangling
    of hemicellulose chains are detected in the opened cell wall regions, whereas
    an increase of lignin is revealed in the compressed areas. These results support
    a new more “loose” cell wall model based on flexible lignin nanodomains and advance
    our knowledge of the molecular reorganization during deformation of wood for optimized
    processing and utilization.
article_processing_charge: No
article_type: original
author:
- first_name: Martin
  full_name: Felhofer, Martin
  last_name: Felhofer
- first_name: Peter
  full_name: Bock, Peter
  last_name: Bock
- first_name: Adya
  full_name: Singh, Adya
  last_name: Singh
- first_name: Batirtze
  full_name: Prats Mateu, Batirtze
  id: 299FE892-F248-11E8-B48F-1D18A9856A87
  last_name: Prats Mateu
- first_name: Ronald
  full_name: Zirbs, Ronald
  last_name: Zirbs
- first_name: Notburga
  full_name: Gierlinger, Notburga
  last_name: Gierlinger
citation:
  ama: Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. Wood deformation
    leads to rearrangement of molecules at the nanoscale. <i>Nano Letters</i>. 2020;20(4):2647-2653.
    doi:<a href="https://doi.org/10.1021/acs.nanolett.0c00205">10.1021/acs.nanolett.0c00205</a>
  apa: Felhofer, M., Bock, P., Singh, A., Prats Mateu, B., Zirbs, R., &#38; Gierlinger,
    N. (2020). Wood deformation leads to rearrangement of molecules at the nanoscale.
    <i>Nano Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.0c00205">https://doi.org/10.1021/acs.nanolett.0c00205</a>
  chicago: Felhofer, Martin, Peter Bock, Adya Singh, Batirtze Prats Mateu, Ronald
    Zirbs, and Notburga Gierlinger. “Wood Deformation Leads to Rearrangement of Molecules
    at the Nanoscale.” <i>Nano Letters</i>. American Chemical Society, 2020. <a href="https://doi.org/10.1021/acs.nanolett.0c00205">https://doi.org/10.1021/acs.nanolett.0c00205</a>.
  ieee: M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, and N. Gierlinger,
    “Wood deformation leads to rearrangement of molecules at the nanoscale,” <i>Nano
    Letters</i>, vol. 20, no. 4. American Chemical Society, pp. 2647–2653, 2020.
  ista: Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. 2020. Wood
    deformation leads to rearrangement of molecules at the nanoscale. Nano Letters.
    20(4), 2647–2653.
  mla: Felhofer, Martin, et al. “Wood Deformation Leads to Rearrangement of Molecules
    at the Nanoscale.” <i>Nano Letters</i>, vol. 20, no. 4, American Chemical Society,
    2020, pp. 2647–53, doi:<a href="https://doi.org/10.1021/acs.nanolett.0c00205">10.1021/acs.nanolett.0c00205</a>.
  short: M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, N. Gierlinger,
    Nano Letters 20 (2020) 2647–2653.
date_created: 2020-04-19T22:00:54Z
date_published: 2020-04-08T00:00:00Z
date_updated: 2026-04-02T14:26:44Z
day: '08'
ddc:
- '530'
department:
- _id: MaLo
doi: 10.1021/acs.nanolett.0c00205
external_id:
  isi:
  - '000526413400055'
  pmid:
  - '32196350'
file:
- access_level: open_access
  checksum: fe46146a9c4c620592a1932a8599069e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T10:43:36Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7667'
  file_name: 2020_NanoLetters_Felhofer.pdf
  file_size: 7108014
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        20'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2647-2653
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Wood deformation leads to rearrangement of molecules at the nanoscale
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 20
year: '2020'
...
---
_id: '7664'
abstract:
- lang: eng
  text: Metabotropic γ-aminobutyric acid (GABAB) receptors contribute to the control
    of network activity and information processing in hippocampal circuits by regulating
    neuronal excitability and synaptic transmission. The dysfunction in the dentate
    gyrus (DG) has been implicated in Alzheimer´s disease (AD). Given the involvement
    of GABAB receptors in AD, to determine their subcellular localisation and possible
    alteration in granule cells of the DG in a mouse model of AD at 12 months of age,
    we used high-resolution immunoelectron microscopic analysis. Immunohistochemistry
    at the light microscopic level showed that the regional and cellular expression
    pattern of GABAB1 was similar in an AD model mouse expressing mutated human amyloid
    precursor protein and presenilin1 (APP/PS1) and in age-matched wild type mice.
    High-resolution immunoelectron microscopy revealed a distance-dependent gradient
    of immunolabelling for GABAB receptors, increasing from proximal to distal dendrites
    in both wild type and APP/PS1 mice. However, the overall density of GABAB receptors
    at the neuronal surface of these postsynaptic compartments of granule cells was
    significantly reduced in APP/PS1 mice. Parallel to this reduction in surface receptors,
    we found a significant increase in GABAB1 at cytoplasmic sites. GABAB receptors
    were also detected at presynaptic sites in the molecular layer of the DG. We also
    found a decrease in plasma membrane GABAB receptors in axon terminals contacting
    dendritic spines of granule cells, which was more pronounced in the outer than
    in the inner molecular layer. Altogether, our data showing post- and presynaptic
    reduction in surface GABAB receptors in the DG suggest the alteration of the GABAB-mediated
    modulation of excitability and synaptic transmission in granule cells, which may
    contribute to the cognitive dysfunctions in the APP/PS1 model of AD
article_number: '2459'
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruíz, Rocío
  last_name: Alfaro-Ruíz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: De La Ossa, Luis
  last_name: De La Ossa
- first_name: José
  full_name: Martínez-Hernández, José
  last_name: Martínez-Hernández
- first_name: Alain
  full_name: Buisson, Alain
  last_name: Buisson
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International journal of molecular sciences</i>. 2020;21(7). doi:<a
    href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
    La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International Journal of Molecular Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
    Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, Ryuichi
    Shigemoto, Yugo Fukazawa, and Rafael Luján. “Density of GABAB Receptors Is Reduced
    in Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.”
    <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Density of GABAB receptors is reduced in
    granule cells of the hippocampus in a mouse model of Alzheimer’s disease,” <i>International
    journal of molecular sciences</i>, vol. 21, no. 7. MDPI, 2020.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
    L, Martínez-Hernández J, Buisson A, Shigemoto R, Fukazawa Y, Luján R. 2020. Density
    of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model
    of Alzheimer’s disease. International journal of molecular sciences. 21(7), 2459.
  mla: Martín-Belmonte, Alejandro, et al. “Density of GABAB Receptors Is Reduced in
    Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>International
    Journal of Molecular Sciences</i>, vol. 21, no. 7, 2459, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
    La Ossa, J. Martínez-Hernández, A. Buisson, R. Shigemoto, Y. Fukazawa, R. Luján,
    International Journal of Molecular Sciences 21 (2020).
date_created: 2020-04-19T22:00:55Z
date_published: 2020-04-02T00:00:00Z
date_updated: 2026-04-02T14:27:06Z
day: '02'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3390/ijms21072459
external_id:
  isi:
  - '000535574200201'
  pmid:
  - '32252271'
file:
- access_level: open_access
  checksum: b9d2f1657d8c4a74b01a62b474d009b0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T11:43:18Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7669'
  file_name: 2020_JournMolecSciences_Martin_Belmonte.pdf
  file_size: 2941197
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '7'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: International journal of molecular sciences
publication_identifier:
  eissn:
  - 1422-0067
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density of GABAB receptors is reduced in granule cells of the hippocampus in
  a mouse model of Alzheimer's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 21
year: '2020'
...
---
_id: '7665'
abstract:
- lang: eng
  text: Acute brain slice preparation is a powerful experimental model for investigating
    the characteristics of synaptic function in the brain. Although brain tissue is
    usually cut at ice-cold temperature (CT) to facilitate slicing and avoid neuronal
    damage, exposure to CT causes molecular and architectural changes of synapses.
    To address these issues, we investigated ultrastructural and electrophysiological
    features of synapses in mouse acute cerebellar slices prepared at ice-cold and
    physiological temperature (PT). In the slices prepared at CT, we found significant
    spine loss and reconstruction, synaptic vesicle rearrangement and decrease in
    synaptic proteins, all of which were not detected in slices prepared at PT. Consistent
    with these structural findings, slices prepared at PT showed higher release probability.
    Furthermore, preparation at PT allows electrophysiological recording immediately
    after slicing resulting in higher detectability of long-term depression (LTD)
    after motor learning compared with that at CT. These results indicate substantial
    advantages of the slice preparation at PT for investigating synaptic functions
    in different physiological conditions.
article_number: '63'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Philipp
  full_name: Velicky, Philipp
  id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
  last_name: Velicky
  orcid: 0000-0002-2340-7431
- first_name: Elena
  full_name: Hollergschwandtner, Elena
  id: 3C054040-F248-11E8-B48F-1D18A9856A87
  last_name: Hollergschwandtner
- first_name: Makoto
  full_name: Itakura, Makoto
  last_name: Itakura
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Eguchi K, Velicky P, Saeckl E, et al. Advantages of acute brain slices prepared
    at physiological temperature in the characterization of synaptic functions. <i>Frontiers
    in Cellular Neuroscience</i>. 2020;14. doi:<a href="https://doi.org/10.3389/fncel.2020.00063">10.3389/fncel.2020.00063</a>
  apa: Eguchi, K., Velicky, P., Saeckl, E., Itakura, M., Fukazawa, Y., Danzl, J. G.,
    &#38; Shigemoto, R. (2020). Advantages of acute brain slices prepared at physiological
    temperature in the characterization of synaptic functions. <i>Frontiers in Cellular
    Neuroscience</i>. Frontiers Media. <a href="https://doi.org/10.3389/fncel.2020.00063">https://doi.org/10.3389/fncel.2020.00063</a>
  chicago: Eguchi, Kohgaku, Philipp Velicky, Elena Saeckl, Makoto Itakura, Yugo Fukazawa,
    Johann G Danzl, and Ryuichi Shigemoto. “Advantages of Acute Brain Slices Prepared
    at Physiological Temperature in the Characterization of Synaptic Functions.” <i>Frontiers
    in Cellular Neuroscience</i>. Frontiers Media, 2020. <a href="https://doi.org/10.3389/fncel.2020.00063">https://doi.org/10.3389/fncel.2020.00063</a>.
  ieee: K. Eguchi <i>et al.</i>, “Advantages of acute brain slices prepared at physiological
    temperature in the characterization of synaptic functions,” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 14. Frontiers Media, 2020.
  ista: Eguchi K, Velicky P, Saeckl E, Itakura M, Fukazawa Y, Danzl JG, Shigemoto
    R. 2020. Advantages of acute brain slices prepared at physiological temperature
    in the characterization of synaptic functions. Frontiers in Cellular Neuroscience.
    14, 63.
  mla: Eguchi, Kohgaku, et al. “Advantages of Acute Brain Slices Prepared at Physiological
    Temperature in the Characterization of Synaptic Functions.” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 14, 63, Frontiers Media, 2020, doi:<a href="https://doi.org/10.3389/fncel.2020.00063">10.3389/fncel.2020.00063</a>.
  short: K. Eguchi, P. Velicky, E. Saeckl, M. Itakura, Y. Fukazawa, J.G. Danzl, R.
    Shigemoto, Frontiers in Cellular Neuroscience 14 (2020).
corr_author: '1'
date_created: 2020-04-19T22:00:55Z
date_published: 2020-03-19T00:00:00Z
date_updated: 2025-06-12T07:16:39Z
day: '19'
ddc:
- '570'
department:
- _id: JoDa
- _id: RySh
doi: 10.3389/fncel.2020.00063
ec_funded: 1
external_id:
  isi:
  - '000525582200001'
  pmid:
  - '32265664'
file:
- access_level: open_access
  checksum: 1c145123c6f8dc3e2e4bd5a66a1ad60e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T10:59:49Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7668'
  file_name: 2020_FrontiersCellularNeurosc_Eguchi.pdf
  file_size: 9227283
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2659CC84-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '793482'
  name: 'Ultrastructural analysis of phosphoinositides in nerve terminals: distribution,
    dynamics and physiological roles in synaptic transmission'
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 265CB4D0-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03600
  name: Optical control of synaptic function via adhesion molecules
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Frontiers in Cellular Neuroscience
publication_identifier:
  issn:
  - 1662-5102
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Advantages of acute brain slices prepared at physiological temperature in the
  characterization of synaptic functions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2020'
...
---
_id: '7666'
abstract:
- lang: eng
  text: Generalizing the decomposition of a connected planar graph into a tree and
    a dual tree, we prove a combinatorial analog of the classic Helmholtz–Hodge decomposition
    of a smooth vector field. Specifically, we show that for every polyhedral complex,
    K, and every dimension, p, there is a partition of the set of p-cells into a maximal
    p-tree, a maximal p-cotree, and a collection of p-cells whose cardinality is the
    p-th reduced Betti number of K. Given an ordering of the p-cells, this tri-partition
    is unique, and it can be computed by a matrix reduction algorithm that also constructs
    canonical bases of cycle and boundary groups.
acknowledgement: This project has received funding from the European Research Council
  under the European Union’s Horizon 2020 research and innovation programme (Grant
  Agreement No. 78818 Alpha). It is also partially supported by the DFG Collaborative
  Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, through Grant
  No. I02979-N35 of the Austrian Science Fund (FWF).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Katharina
  full_name: Ölsböck, Katharina
  id: 4D4AA390-F248-11E8-B48F-1D18A9856A87
  last_name: Ölsböck
  orcid: 0000-0002-4672-8297
citation:
  ama: Edelsbrunner H, Ölsböck K. Tri-partitions and bases of an ordered complex.
    <i>Discrete and Computational Geometry</i>. 2020;64:759-775. doi:<a href="https://doi.org/10.1007/s00454-020-00188-x">10.1007/s00454-020-00188-x</a>
  apa: Edelsbrunner, H., &#38; Ölsböck, K. (2020). Tri-partitions and bases of an
    ordered complex. <i>Discrete and Computational Geometry</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s00454-020-00188-x">https://doi.org/10.1007/s00454-020-00188-x</a>
  chicago: Edelsbrunner, Herbert, and Katharina Ölsböck. “Tri-Partitions and Bases
    of an Ordered Complex.” <i>Discrete and Computational Geometry</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1007/s00454-020-00188-x">https://doi.org/10.1007/s00454-020-00188-x</a>.
  ieee: H. Edelsbrunner and K. Ölsböck, “Tri-partitions and bases of an ordered complex,”
    <i>Discrete and Computational Geometry</i>, vol. 64. Springer Nature, pp. 759–775,
    2020.
  ista: Edelsbrunner H, Ölsböck K. 2020. Tri-partitions and bases of an ordered complex.
    Discrete and Computational Geometry. 64, 759–775.
  mla: Edelsbrunner, Herbert, and Katharina Ölsböck. “Tri-Partitions and Bases of
    an Ordered Complex.” <i>Discrete and Computational Geometry</i>, vol. 64, Springer
    Nature, 2020, pp. 759–75, doi:<a href="https://doi.org/10.1007/s00454-020-00188-x">10.1007/s00454-020-00188-x</a>.
  short: H. Edelsbrunner, K. Ölsböck, Discrete and Computational Geometry 64 (2020)
    759–775.
corr_author: '1'
date_created: 2020-04-19T22:00:56Z
date_published: 2020-03-20T00:00:00Z
date_updated: 2025-04-14T07:48:36Z
day: '20'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-020-00188-x
ec_funded: 1
external_id:
  isi:
  - '000520918800001'
file:
- access_level: open_access
  checksum: f8cc96e497f00c38340b5dafe0cb91d7
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T13:22:21Z
  date_updated: 2020-11-20T13:22:21Z
  file_id: '8786'
  file_name: 2020_DiscreteCompGeo_Edelsbrunner.pdf
  file_size: 701673
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T13:22:21Z
has_accepted_license: '1'
intvolume: '        64'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 759-775
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - '14320444'
  issn:
  - '01795376'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tri-partitions and bases of an ordered complex
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 64
year: '2020'
...
---
_id: '7672'
abstract:
- lang: eng
  text: Large overpotentials upon discharge and charge of Li-O2 cells have motivated
    extensive research into heterogeneous solid electrocatalysts or non-carbon electrodes
    with the aim to improve rate capability, round-trip efficiency and cycle life.
    These features are equally governed by parasitic reactions, which are now recognized
    to be caused by the highly reactive singlet oxygen (1O2). However, the link between
    the presence of electrocatalysts and 1O2 formation in metal-O2 cells is unknown.
    Here, we show that, compared to pristine carbon black electrodes, a representative
    selection of electrocatalysts or non-carbon electrodes (noble metal, transition
    metal compounds) may both slightly reduce or severely increase the 1O2 formation.
    The individual reaction steps, where the surfaces impact the 1O2 yield are deciphered,
    showing that 1O2 yield from superoxide disproportionation as well as the decomposition
    of trace H2O2 are sensitive to catalysts. Transition metal compounds in general
    are prone to increase 1O2.
acknowledgement: S.A.F. thanks the International Society of Electrochemistry for awarding
  the Tajima Prize 2019 “in recognition of outstanding re- searches on Li-Air batteries
  by the use of a range of in-situ elec- trochemical methods to achieve comprehensive
  understanding of the reactions taking place at the oxygen electrode”. This article
  is dedicated to the special issue of Electrochmica Acta associated with the awarding
  conference. S.A.F. is indebted to and the Austrian Federal Ministry of Science,
  Research and Economy and the Austrian Research Promotion Agency (grant No. 845364
  ) and the European Research Council (ERC) under the European Union’s Horizon 2020
  research and innovation programme (grant agreement No 636069). The authors thank
  J. Schlegl for manufacturing instrumentation, M. Winkler of Acib GmbH and G. Strohmeier
  for help with HPLC measurements, S. Eder for cyclic voltammetry measurements, and
  C. Slugovc for discussions and continuous support. We thank S. Borisov for access
  and advice with fluorescence measurements. We thank EL-Cell GmbH, Hamburg, Germany
  for providing the PAT-Cell-Press electrochemical cell.
article_number: '137175'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Aleksej
  full_name: Samojlov, Aleksej
  last_name: Samojlov
- first_name: David
  full_name: Schuster, David
  last_name: Schuster
- first_name: Jürgen
  full_name: Kahr, Jürgen
  last_name: Kahr
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Samojlov A, Schuster D, Kahr J, Freunberger SA. Surface and catalyst driven
    singlet oxygen formation in Li-O2 cells. <i>Electrochimica Acta</i>. 2020;362(12).
    doi:<a href="https://doi.org/10.1016/j.electacta.2020.137175">10.1016/j.electacta.2020.137175</a>
  apa: Samojlov, A., Schuster, D., Kahr, J., &#38; Freunberger, S. A. (2020). Surface
    and catalyst driven singlet oxygen formation in Li-O2 cells. <i>Electrochimica
    Acta</i>. Elsevier. <a href="https://doi.org/10.1016/j.electacta.2020.137175">https://doi.org/10.1016/j.electacta.2020.137175</a>
  chicago: Samojlov, Aleksej, David Schuster, Jürgen Kahr, and Stefan Alexander Freunberger.
    “Surface and Catalyst Driven Singlet Oxygen Formation in Li-O2 Cells.” <i>Electrochimica
    Acta</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.electacta.2020.137175">https://doi.org/10.1016/j.electacta.2020.137175</a>.
  ieee: A. Samojlov, D. Schuster, J. Kahr, and S. A. Freunberger, “Surface and catalyst
    driven singlet oxygen formation in Li-O2 cells,” <i>Electrochimica Acta</i>, vol.
    362, no. 12. Elsevier, 2020.
  ista: Samojlov A, Schuster D, Kahr J, Freunberger SA. 2020. Surface and catalyst
    driven singlet oxygen formation in Li-O2 cells. Electrochimica Acta. 362(12),
    137175.
  mla: Samojlov, Aleksej, et al. “Surface and Catalyst Driven Singlet Oxygen Formation
    in Li-O2 Cells.” <i>Electrochimica Acta</i>, vol. 362, no. 12, 137175, Elsevier,
    2020, doi:<a href="https://doi.org/10.1016/j.electacta.2020.137175">10.1016/j.electacta.2020.137175</a>.
  short: A. Samojlov, D. Schuster, J. Kahr, S.A. Freunberger, Electrochimica Acta
    362 (2020).
corr_author: '1'
date_created: 2020-04-20T19:29:31Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2024-10-09T20:59:27Z
day: '01'
ddc:
- '540'
department:
- _id: StFr
doi: 10.1016/j.electacta.2020.137175
external_id:
  isi:
  - '000582869700060'
file:
- access_level: open_access
  checksum: 1ab1aa2024d431e2a089ea336bc08298
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-01T13:20:45Z
  date_updated: 2020-10-01T13:20:45Z
  file_id: '8593'
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  file_size: 1404030
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has_accepted_license: '1'
intvolume: '       362'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Electrochimica Acta
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Surface and catalyst driven singlet oxygen formation in Li-O2 cells
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 362
year: '2020'
...
---
_id: '7683'
abstract:
- lang: eng
  text: For any free oriented Borel–Moore homology theory A, we construct an associative
    product on the A-theory of the stack of Higgs torsion sheaves over a projective
    curve C. We show that the resulting algebra AHa0C admits a natural shuffle presentation,
    and prove it is faithful when A is replaced with usual Borel–Moore homology groups.
    We also introduce moduli spaces of stable triples, heavily inspired by Nakajima
    quiver varieties, whose A-theory admits an AHa0C-action. These triples can be
    interpreted as certain sheaves on PC(ωC⊕OC). In particular, we obtain an action
    of AHa0C on the cohomology of Hilbert schemes of points on T∗C.
article_number: '30'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Sasha
  full_name: Minets, Sasha
  id: 3E7C5304-F248-11E8-B48F-1D18A9856A87
  last_name: Minets
  orcid: 0000-0003-3883-1806
citation:
  ama: Minets S. Cohomological Hall algebras for Higgs torsion sheaves, moduli of
    triples and sheaves on surfaces. <i>Selecta Mathematica, New Series</i>. 2020;26(2).
    doi:<a href="https://doi.org/10.1007/s00029-020-00553-x">10.1007/s00029-020-00553-x</a>
  apa: Minets, S. (2020). Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces. <i>Selecta Mathematica, New Series</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00029-020-00553-x">https://doi.org/10.1007/s00029-020-00553-x</a>
  chicago: Minets, Sasha. “Cohomological Hall Algebras for Higgs Torsion Sheaves,
    Moduli of Triples and Sheaves on Surfaces.” <i>Selecta Mathematica, New Series</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1007/s00029-020-00553-x">https://doi.org/10.1007/s00029-020-00553-x</a>.
  ieee: S. Minets, “Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces,” <i>Selecta Mathematica, New Series</i>, vol.
    26, no. 2. Springer Nature, 2020.
  ista: Minets S. 2020. Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces. Selecta Mathematica, New Series. 26(2), 30.
  mla: Minets, Sasha. “Cohomological Hall Algebras for Higgs Torsion Sheaves, Moduli
    of Triples and Sheaves on Surfaces.” <i>Selecta Mathematica, New Series</i>, vol.
    26, no. 2, 30, Springer Nature, 2020, doi:<a href="https://doi.org/10.1007/s00029-020-00553-x">10.1007/s00029-020-00553-x</a>.
  short: S. Minets, Selecta Mathematica, New Series 26 (2020).
corr_author: '1'
date_created: 2020-04-26T22:00:44Z
date_published: 2020-04-15T00:00:00Z
date_updated: 2025-05-20T10:38:32Z
day: '15'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1007/s00029-020-00553-x
external_id:
  arxiv:
  - '1801.01429'
  isi:
  - '000526036400001'
file:
- access_level: open_access
  checksum: 2368c4662629b4759295eb365323b2ad
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-28T10:57:58Z
  date_updated: 2020-07-14T12:48:02Z
  file_id: '7690'
  file_name: 2020_SelectaMathematica_Minets.pdf
  file_size: 792469
  relation: main_file
file_date_updated: 2020-07-14T12:48:02Z
has_accepted_license: '1'
intvolume: '        26'
isi: 1
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Selecta Mathematica, New Series
publication_identifier:
  eissn:
  - 1420-9020
  issn:
  - 1022-1824
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cohomological Hall algebras for Higgs torsion sheaves, moduli of triples and
  sheaves on surfaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 9947682f-b9fa-11ee-9c4a-b3ffaafe6614
volume: 26
year: '2020'
...
---
_id: '7684'
article_processing_charge: No
article_type: original
author:
- first_name: Igor
  full_name: Gridchyn, Igor
  id: 4B60654C-F248-11E8-B48F-1D18A9856A87
  last_name: Gridchyn
  orcid: 0000-0002-1807-1929
- first_name: Philipp
  full_name: Schönenberger, Philipp
  id: 3B9D816C-F248-11E8-B48F-1D18A9856A87
  last_name: Schönenberger
- first_name: Joseph
  full_name: O'Neill, Joseph
  id: 426376DC-F248-11E8-B48F-1D18A9856A87
  last_name: O'Neill
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
citation:
  ama: Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. Assembly-specific disruption
    of hippocampal replay leads to selective memory deficit. <i>Neuron</i>. 2020;106(2):291-300.e6.
    doi:<a href="https://doi.org/10.1016/j.neuron.2020.01.021">10.1016/j.neuron.2020.01.021</a>
  apa: Gridchyn, I., Schönenberger, P., O’Neill, J., &#38; Csicsvari, J. L. (2020).
    Assembly-specific disruption of hippocampal replay leads to selective memory deficit.
    <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2020.01.021">https://doi.org/10.1016/j.neuron.2020.01.021</a>
  chicago: Gridchyn, Igor, Philipp Schönenberger, Joseph O’Neill, and Jozsef L Csicsvari.
    “Assembly-Specific Disruption of Hippocampal Replay Leads to Selective Memory
    Deficit.” <i>Neuron</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.neuron.2020.01.021">https://doi.org/10.1016/j.neuron.2020.01.021</a>.
  ieee: I. Gridchyn, P. Schönenberger, J. O’Neill, and J. L. Csicsvari, “Assembly-specific
    disruption of hippocampal replay leads to selective memory deficit,” <i>Neuron</i>,
    vol. 106, no. 2. Elsevier, p. 291–300.e6, 2020.
  ista: Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. 2020. Assembly-specific
    disruption of hippocampal replay leads to selective memory deficit. Neuron. 106(2),
    291–300.e6.
  mla: Gridchyn, Igor, et al. “Assembly-Specific Disruption of Hippocampal Replay
    Leads to Selective Memory Deficit.” <i>Neuron</i>, vol. 106, no. 2, Elsevier,
    2020, p. 291–300.e6, doi:<a href="https://doi.org/10.1016/j.neuron.2020.01.021">10.1016/j.neuron.2020.01.021</a>.
  short: I. Gridchyn, P. Schönenberger, J. O’Neill, J.L. Csicsvari, Neuron 106 (2020)
    291–300.e6.
date_created: 2020-04-26T22:00:45Z
date_published: 2020-04-22T00:00:00Z
date_updated: 2026-06-18T19:26:54Z
day: '22'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1016/j.neuron.2020.01.021
ec_funded: 1
external_id:
  isi:
  - '000528268200013'
  pmid:
  - '32070475'
intvolume: '       106'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.neuron.2020.01.021
month: '04'
oa: 1
oa_version: Published Version
page: 291-300.e6
pmid: 1
project:
- _id: 257A4776-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281511'
  name: Memory-related information processing in neuronal circuits of the hippocampus
    and entorhinal cortex
publication: Neuron
publication_identifier:
  eissn:
  - 1097-4199
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/librarian-of-memory/
scopus_import: '1'
status: public
title: Assembly-specific disruption of hippocampal replay leads to selective memory
  deficit
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 106
year: '2020'
...
---
_id: '7687'
abstract:
- lang: eng
  text: A working group, which was established within the Network of Repository Managers  (RepManNet),  has  dealt  with  common  certifications  for  repositories.  In
    addition,  current  requirements  of  the  research  funding  agencies  FWF  and  EU  were
    also taken into account. The Core Trust Seal was examined in more detail. For
    this purpose,  a  questionnaire  was  sent  to  those  organizations  that  are  already  certified
    with CTS in Austria. The answers were summarized and evaluated anonymously. It
    is recommended to go for a repository certification. Moreover, the development
    of a DINI certificate in Austria is strongly suggested.
- lang: ger
  text: ' Eine Arbeitsgruppe, die im Rahmen des Netzwerks für RepositorienmanagerInnen
    (RepManNet) entstanden ist, hat sich mit gängigen Zertifizierungen für Repositorien
    beschäftigt. Weiters wurden aktuelle Vorgaben der Forschungsförderer FWF und EU
    herangezogen. Das Core Trust Seal wurde genauer betrachtet. Hierfür  wurden jenen  Organisationen,  die  in  Österreich  bereits  mit  CTS  zertifiziert
    sind, ein Fragebogen übermittelt. Die Antworten wurden anonymisiert zusammengefasst
    und ausgewertet. Plädiert wird für eine Zertifizierung von Repositorien und die
    Entwicklung einer DINI-Zertifizierung in Österreich.'
article_processing_charge: No
article_type: original
author:
- first_name: Doris
  full_name: Ernst, Doris
  id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
  last_name: Ernst
  orcid: 0000-0002-2354-0195
- first_name: Gertraud
  full_name: Novotny, Gertraud
  last_name: Novotny
- first_name: Eva Maria
  full_name: Schönher, Eva Maria
  last_name: Schönher
citation:
  ama: Ernst D, Novotny G, Schönher EM. (Core Trust) Seal your repository! <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2020;73(1):46-59.
    doi:<a href="https://doi.org/10.31263/voebm.v73i1.3491">10.31263/voebm.v73i1.3491</a>
  apa: Ernst, D., Novotny, G., &#38; Schönher, E. M. (2020). (Core Trust) Seal your
    repository! <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen
    und Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare.
    <a href="https://doi.org/10.31263/voebm.v73i1.3491">https://doi.org/10.31263/voebm.v73i1.3491</a>
  chicago: Ernst, Doris, Gertraud Novotny, and Eva Maria Schönher. “(Core Trust) Seal
    your repository!” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen
    und Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare,
    2020. <a href="https://doi.org/10.31263/voebm.v73i1.3491">https://doi.org/10.31263/voebm.v73i1.3491</a>.
  ieee: D. Ernst, G. Novotny, and E. M. Schönher, “(Core Trust) Seal your repository!,”
    <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>,
    vol. 73, no. 1. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare,
    pp. 46–59, 2020.
  ista: Ernst D, Novotny G, Schönher EM. 2020. (Core Trust) Seal your repository!
    Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare.
    73(1), 46–59.
  mla: Ernst, Doris, et al. “(Core Trust) Seal your repository!” <i>Mitteilungen der
    Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol. 73,
    no. 1, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2020,
    pp. 46–59, doi:<a href="https://doi.org/10.31263/voebm.v73i1.3491">10.31263/voebm.v73i1.3491</a>.
  short: D. Ernst, G. Novotny, E.M. Schönher, Mitteilungen der Vereinigung Österreichischer
    Bibliothekarinnen und Bibliothekare 73 (2020) 46–59.
corr_author: '1'
date_created: 2020-04-28T08:37:38Z
date_published: 2020-04-28T00:00:00Z
date_updated: 2026-03-16T13:47:31Z
day: '28'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.31263/voebm.v73i1.3491
external_id:
  oaworkid:
  - W3021112752
file:
- access_level: open_access
  checksum: fee784f15a489deb7def6ccf8c5bf8c3
  content_type: application/pdf
  creator: dernst
  date_created: 2020-06-17T10:50:13Z
  date_updated: 2024-03-12T10:12:33Z
  file_id: '7970'
  file_name: 2020_VOEB_Ernst.pdf
  file_size: 579291
  relation: main_file
file_date_updated: 2024-03-12T10:12:33Z
has_accepted_license: '1'
intvolume: '        73'
issue: '1'
language:
- iso: ger
month: '04'
oa: 1
oa_version: Published Version
oaworkid: 1
page: 46-59
popular_science: '1'
publication: Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
publication_identifier:
  issn:
  - 1022-2588
publication_status: published
publisher: Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
scopus_import: '1'
status: public
title: (Core Trust) Seal your repository!
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 73
year: '2020'
...
---
_id: '7689'
abstract:
- lang: eng
  text: "These are the supplementary research data to the publication \"Zero field
    splitting of heavy-hole states in quantum dots\". All matrix files have the same
    format. Within each column the bias voltage is changed. Each column corresponds
    to either a different gate voltage or magnetic field. The voltage values are given
    in mV, the current values in pA. Find a specific description in the included Readme
    file.\r\n"
article_processing_charge: No
author:
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
citation:
  ama: Katsaros G. Supplementary data for “Zero field splitting of heavy-hole states
    in quantum dots.” 2020. doi:<a href="https://doi.org/10.15479/AT:ISTA:7689">10.15479/AT:ISTA:7689</a>
  apa: Katsaros, G. (2020). Supplementary data for “Zero field splitting of heavy-hole
    states in quantum dots.” Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:7689">https://doi.org/10.15479/AT:ISTA:7689</a>
  chicago: Katsaros, Georgios. “Supplementary Data for ‘Zero Field Splitting of Heavy-Hole
    States in Quantum Dots.’” Institute of Science and Technology Austria, 2020. <a
    href="https://doi.org/10.15479/AT:ISTA:7689">https://doi.org/10.15479/AT:ISTA:7689</a>.
  ieee: G. Katsaros, “Supplementary data for ‘Zero field splitting of heavy-hole states
    in quantum dots.’” Institute of Science and Technology Austria, 2020.
  ista: Katsaros G. 2020. Supplementary data for ‘Zero field splitting of heavy-hole
    states in quantum dots’, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:7689">10.15479/AT:ISTA:7689</a>.
  mla: Katsaros, Georgios. <i>Supplementary Data for “Zero Field Splitting of Heavy-Hole
    States in Quantum Dots.”</i> Institute of Science and Technology Austria, 2020,
    doi:<a href="https://doi.org/10.15479/AT:ISTA:7689">10.15479/AT:ISTA:7689</a>.
  short: G. Katsaros, (2020).
contributor:
- contributor_type: contact_person
  first_name: Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
corr_author: '1'
date_created: 2020-05-01T15:14:46Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2025-04-15T08:39:16Z
day: '01'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.15479/AT:ISTA:7689
ec_funded: 1
file:
- access_level: open_access
  checksum: d23c0cb9e2d19e14e2f902b88b97c05d
  content_type: application/x-zip-compressed
  creator: gkatsaro
  date_created: 2020-05-01T15:13:28Z
  date_updated: 2020-07-14T12:48:02Z
  file_id: '7786'
  file_name: DOI_ZeroFieldSplitting.zip
  file_size: 5514403
  relation: main_file
file_date_updated: 2020-07-14T12:48:02Z
has_accepted_license: '1'
license: https://creativecommons.org/publicdomain/zero/1.0/
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 237E5020-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '862046'
  name: TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS
- _id: 237B3DA4-32DE-11EA-91FC-C7463DDC885E
  call_identifier: FWF
  grant_number: P32235
  name: Towards scalable hut wire quantum devices
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '8203'
    relation: used_in_publication
    status: public
status: public
title: Supplementary data for "Zero field splitting of heavy-hole states in quantum
  dots"
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7695'
abstract:
- lang: eng
  text: The TPLATE complex (TPC) is a key endocytic adaptor protein complex in plants.
    TPC in Arabidopsis (Arabidopsis thaliana) contains six evolutionarily conserved
    subunits and two plant-specific subunits, AtEH1/Pan1 and AtEH2/Pan1, although
    cytoplasmic proteins are not associated with the hexameric subcomplex in the cytoplasm.
    To investigate the dynamic assembly of the octameric TPC at the plasma membrane
    (PM), we performed state-of-the-art dual-color live cell imaging at physiological
    and lowered temperatures. Lowering the temperature slowed down endocytosis, thereby
    enhancing the temporal resolution of the differential recruitment of endocytic
    components. Under both normal and lowered temperature conditions, the core TPC
    subunit TPLATE and the AtEH/Pan1 proteins exhibited simultaneous recruitment at
    the PM. These results, together with co-localization analysis of different TPC
    subunits, allow us to conclude that TPC in plant cells is not recruited to the
    PM sequentially but as an octameric complex.
article_processing_charge: No
article_type: original
author:
- first_name: J
  full_name: Wang, J
  last_name: Wang
- first_name: E
  full_name: Mylle, E
  last_name: Mylle
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: N
  full_name: Besbrugge, N
  last_name: Besbrugge
- first_name: G
  full_name: De Jaeger, G
  last_name: De Jaeger
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: R
  full_name: Pleskot, R
  last_name: Pleskot
- first_name: D
  full_name: van Damme, D
  last_name: van Damme
citation:
  ama: Wang J, Mylle E, Johnson AJ, et al. High temporal resolution reveals simultaneous
    plasma membrane recruitment of TPLATE complex subunits. <i>Plant Physiology</i>.
    2020;183(3):986-997. doi:<a href="https://doi.org/10.1104/pp.20.00178">10.1104/pp.20.00178</a>
  apa: Wang, J., Mylle, E., Johnson, A. J., Besbrugge, N., De Jaeger, G., Friml, J.,
    … van Damme, D. (2020). High temporal resolution reveals simultaneous plasma membrane
    recruitment of TPLATE complex subunits. <i>Plant Physiology</i>. American Society
    of Plant Biologists. <a href="https://doi.org/10.1104/pp.20.00178">https://doi.org/10.1104/pp.20.00178</a>
  chicago: Wang, J, E Mylle, Alexander J Johnson, N Besbrugge, G De Jaeger, Jiří Friml,
    R Pleskot, and D van Damme. “High Temporal Resolution Reveals Simultaneous Plasma
    Membrane Recruitment of TPLATE Complex Subunits.” <i>Plant Physiology</i>. American
    Society of Plant Biologists, 2020. <a href="https://doi.org/10.1104/pp.20.00178">https://doi.org/10.1104/pp.20.00178</a>.
  ieee: J. Wang <i>et al.</i>, “High temporal resolution reveals simultaneous plasma
    membrane recruitment of TPLATE complex subunits,” <i>Plant Physiology</i>, vol.
    183, no. 3. American Society of Plant Biologists, pp. 986–997, 2020.
  ista: Wang J, Mylle E, Johnson AJ, Besbrugge N, De Jaeger G, Friml J, Pleskot R,
    van Damme D. 2020. High temporal resolution reveals simultaneous plasma membrane
    recruitment of TPLATE complex subunits. Plant Physiology. 183(3), 986–997.
  mla: Wang, J., et al. “High Temporal Resolution Reveals Simultaneous Plasma Membrane
    Recruitment of TPLATE Complex Subunits.” <i>Plant Physiology</i>, vol. 183, no.
    3, American Society of Plant Biologists, 2020, pp. 986–97, doi:<a href="https://doi.org/10.1104/pp.20.00178">10.1104/pp.20.00178</a>.
  short: J. Wang, E. Mylle, A.J. Johnson, N. Besbrugge, G. De Jaeger, J. Friml, R.
    Pleskot, D. van Damme, Plant Physiology 183 (2020) 986–997.
date_created: 2020-04-29T15:23:00Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2025-04-15T07:32:09Z
day: '01'
department:
- _id: JiFr
doi: 10.1104/pp.20.00178
external_id:
  isi:
  - '000550682000018'
  pmid:
  - '32321842'
intvolume: '       183'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2020.02.13.948109
month: '07'
oa: 1
oa_version: Preprint
page: 986-997
pmid: 1
project:
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Plant Physiology
publication_identifier:
  eissn:
  - 1532-2548
  issn:
  - 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: High temporal resolution reveals simultaneous plasma membrane recruitment of
  TPLATE complex subunits
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 183
year: '2020'
...
---
_id: '7697'
abstract:
- lang: eng
  text: "* Morphogenesis and adaptive tropic growth in plants depend on gradients
    of the phytohormone auxin, mediated by the membrane‐based PIN‐FORMED (PIN) auxin
    transporters. PINs localize to a particular side of the plasma membrane (PM) or
    to the endoplasmic reticulum (ER) to directionally transport auxin and maintain
    intercellular and intracellular auxin homeostasis, respectively. However, the
    molecular cues that confer their diverse cellular localizations remain largely
    unknown.\r\n* In this study, we systematically swapped the domains between ER‐
    and PM‐localized PIN proteins, as well as between apical and basal PM‐localized
    PINs from Arabidopsis thaliana , to shed light on why PIN family members with
    similar topological structures reside at different membrane compartments within
    cells.\r\n* Our results show that not only do the N‐ and C‐terminal transmembrane
    domains (TMDs) and central hydrophilic loop contribute to their differential subcellular
    localizations and cellular polarity, but that the pairwise‐matched N‐ and C‐terminal
    TMDs resulting from intramolecular domain–domain coevolution are also crucial
    for their divergent patterns of localization.\r\n* These findings illustrate the
    complexity of the evolutionary path of PIN proteins in acquiring their plethora
    of developmental functions and adaptive growth in plants."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Corinna
  full_name: Hartinger, Corinna
  id: AEFB2266-8ABF-11EA-AA39-812C3623CBE4
  last_name: Hartinger
  orcid: 0000-0003-1618-2737
- first_name: Xiaojuan
  full_name: Wang, Xiaojuan
  last_name: Wang
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang Y, Hartinger C, Wang X, Friml J. Directional auxin fluxes in plants by
    intramolecular domain‐domain co‐evolution of PIN auxin transporters. <i>New Phytologist</i>.
    2020;227(5):1406-1416. doi:<a href="https://doi.org/10.1111/nph.16629">10.1111/nph.16629</a>
  apa: Zhang, Y., Hartinger, C., Wang, X., &#38; Friml, J. (2020). Directional auxin
    fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters.
    <i>New Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.16629">https://doi.org/10.1111/nph.16629</a>
  chicago: Zhang, Yuzhou, Corinna Hartinger, Xiaojuan Wang, and Jiří Friml. “Directional
    Auxin Fluxes in Plants by Intramolecular Domain‐domain Co‐evolution of PIN Auxin
    Transporters.” <i>New Phytologist</i>. Wiley, 2020. <a href="https://doi.org/10.1111/nph.16629">https://doi.org/10.1111/nph.16629</a>.
  ieee: Y. Zhang, C. Hartinger, X. Wang, and J. Friml, “Directional auxin fluxes in
    plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters,”
    <i>New Phytologist</i>, vol. 227, no. 5. Wiley, pp. 1406–1416, 2020.
  ista: Zhang Y, Hartinger C, Wang X, Friml J. 2020. Directional auxin fluxes in plants
    by intramolecular domain‐domain co‐evolution of PIN auxin transporters. New Phytologist.
    227(5), 1406–1416.
  mla: Zhang, Yuzhou, et al. “Directional Auxin Fluxes in Plants by Intramolecular
    Domain‐domain Co‐evolution of PIN Auxin Transporters.” <i>New Phytologist</i>,
    vol. 227, no. 5, Wiley, 2020, pp. 1406–16, doi:<a href="https://doi.org/10.1111/nph.16629">10.1111/nph.16629</a>.
  short: Y. Zhang, C. Hartinger, X. Wang, J. Friml, New Phytologist 227 (2020) 1406–1416.
corr_author: '1'
date_created: 2020-04-30T08:43:29Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2025-04-14T07:45:03Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.16629
ec_funded: 1
external_id:
  isi:
  - '000534092400001'
  pmid:
  - '32350870'
file:
- access_level: open_access
  checksum: 8e8150dbbba8cb65b72f81d1f0864b8b
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-24T12:19:38Z
  date_updated: 2020-11-24T12:19:38Z
  file_id: '8799'
  file_name: 2020_09_NewPhytologist_Zhang.pdf
  file_size: 3643395
  relation: main_file
  success: 1
file_date_updated: 2020-11-24T12:19:38Z
has_accepted_license: '1'
intvolume: '       227'
isi: 1
issue: '5'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1406-1416
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution
  of PIN auxin transporters
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 227
year: '2020'
...
