---
_id: '13056'
abstract:
- lang: eng
  text: This datasets comprises all data shown in plots of the submitted article "Converting
    microwave and telecom photons with a silicon photonic nanomechanical interface".
    Additional raw data are available from the corresponding author on reasonable
    request.
article_processing_charge: No
author:
- first_name: Georg M
  full_name: Arnold, Georg M
  id: 3770C838-F248-11E8-B48F-1D18A9856A87
  last_name: Arnold
  orcid: 0000-0003-1397-7876
- first_name: Matthias
  full_name: Wulf, Matthias
  id: 45598606-F248-11E8-B48F-1D18A9856A87
  last_name: Wulf
  orcid: 0000-0001-6613-1378
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Elena
  full_name: Redchenko, Elena
  id: 2C21D6E8-F248-11E8-B48F-1D18A9856A87
  last_name: Redchenko
- first_name: Alfredo R
  full_name: Rueda Sanchez, Alfredo R
  id: 3B82B0F8-F248-11E8-B48F-1D18A9856A87
  last_name: Rueda Sanchez
  orcid: 0000-0001-6249-5860
- first_name: William J
  full_name: Hease, William J
  id: 29705398-F248-11E8-B48F-1D18A9856A87
  last_name: Hease
  orcid: 0000-0001-9868-2166
- first_name: Farid
  full_name: Hassani, Farid
  id: 2AED110C-F248-11E8-B48F-1D18A9856A87
  last_name: Hassani
  orcid: 0000-0001-6937-5773
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: Arnold GM, Wulf M, Barzanjeh S, et al. Converting microwave and telecom photons
    with a silicon photonic nanomechanical interface. 2020. doi:<a href="https://doi.org/10.5281/ZENODO.3961561">10.5281/ZENODO.3961561</a>
  apa: Arnold, G. M., Wulf, M., Barzanjeh, S., Redchenko, E., Rueda Sanchez, A. R.,
    Hease, W. J., … Fink, J. M. (2020). Converting microwave and telecom photons with
    a silicon photonic nanomechanical interface. Zenodo. <a href="https://doi.org/10.5281/ZENODO.3961561">https://doi.org/10.5281/ZENODO.3961561</a>
  chicago: Arnold, Georg M, Matthias Wulf, Shabir Barzanjeh, Elena Redchenko, Alfredo
    R Rueda Sanchez, William J Hease, Farid Hassani, and Johannes M Fink. “Converting
    Microwave and Telecom Photons with a Silicon Photonic Nanomechanical Interface.”
    Zenodo, 2020. <a href="https://doi.org/10.5281/ZENODO.3961561">https://doi.org/10.5281/ZENODO.3961561</a>.
  ieee: G. M. Arnold <i>et al.</i>, “Converting microwave and telecom photons with
    a silicon photonic nanomechanical interface.” Zenodo, 2020.
  ista: Arnold GM, Wulf M, Barzanjeh S, Redchenko E, Rueda Sanchez AR, Hease WJ, Hassani
    F, Fink JM. 2020. Converting microwave and telecom photons with a silicon photonic
    nanomechanical interface, Zenodo, <a href="https://doi.org/10.5281/ZENODO.3961561">10.5281/ZENODO.3961561</a>.
  mla: Arnold, Georg M., et al. <i>Converting Microwave and Telecom Photons with a
    Silicon Photonic Nanomechanical Interface</i>. Zenodo, 2020, doi:<a href="https://doi.org/10.5281/ZENODO.3961561">10.5281/ZENODO.3961561</a>.
  short: G.M. Arnold, M. Wulf, S. Barzanjeh, E. Redchenko, A.R. Rueda Sanchez, W.J.
    Hease, F. Hassani, J.M. Fink, (2020).
corr_author: '1'
date_created: 2023-05-23T13:37:41Z
date_published: 2020-07-27T00:00:00Z
date_updated: 2025-06-12T07:03:01Z
day: '27'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.5281/ZENODO.3961561
fulldoi: https://doi.org/10.5281/ZENODO.3961561
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.3961562
month: '07'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '8529'
    relation: used_in_publication
    status: public
status: public
title: Converting microwave and telecom photons with a silicon photonic nanomechanical
  interface
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '13060'
abstract:
- lang: eng
  text: Coinfections with multiple pathogens can result in complex within-host dynamics
    affecting virulence and transmission. Whilst multiple infections are intensively
    studied in solitary hosts, it is so far unresolved how social host interactions
    interfere with pathogen competition, and if this depends on coinfection diversity.
    We studied how the collective disease defenses of ants – their social immunity
    ­– influence pathogen competition in coinfections of same or different fungal
    pathogen species. Social immunity reduced virulence for all pathogen combinations,
    but interfered with spore production only in different-species coinfections. Here,
    it decreased overall pathogen sporulation success, whilst simultaneously increasing
    co-sporulation on individual cadavers and maintaining a higher pathogen diversity
    at the community-level. Mathematical modeling revealed that host sanitary care
    alone can modulate competitive outcomes between pathogens, giving advantage to
    fast-germinating, thus less grooming-sensitive ones. Host social interactions
    can hence modulate infection dynamics in coinfected group members, thereby altering
    pathogen communities at the host- and population-level.
article_processing_charge: No
author:
- first_name: Barbara
  full_name: Milutinovic, Barbara
  id: 2CDC32B8-F248-11E8-B48F-1D18A9856A87
  last_name: Milutinovic
  orcid: 0000-0002-8214-4758
- first_name: Miriam
  full_name: Stock, Miriam
  id: 42462816-F248-11E8-B48F-1D18A9856A87
  last_name: Stock
- first_name: Anna V
  full_name: Grasse, Anna V
  id: 406F989C-F248-11E8-B48F-1D18A9856A87
  last_name: Grasse
- first_name: Elisabeth
  full_name: Naderlinger, Elisabeth
  id: 31757262-F248-11E8-B48F-1D18A9856A87
  last_name: Naderlinger
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social
    immunity modulates competition between coinfecting pathogens. 2020. doi:<a href="https://doi.org/10.5061/DRYAD.CRJDFN318">10.5061/DRYAD.CRJDFN318</a>
  apa: Milutinovic, B., Stock, M., Grasse, A. V., Naderlinger, E., Hilbe, C., &#38;
    Cremer, S. (2020). Social immunity modulates competition between coinfecting pathogens.
    Dryad. <a href="https://doi.org/10.5061/DRYAD.CRJDFN318">https://doi.org/10.5061/DRYAD.CRJDFN318</a>
  chicago: Milutinovic, Barbara, Miriam Stock, Anna V Grasse, Elisabeth Naderlinger,
    Christian Hilbe, and Sylvia Cremer. “Social Immunity Modulates Competition between
    Coinfecting Pathogens.” Dryad, 2020. <a href="https://doi.org/10.5061/DRYAD.CRJDFN318">https://doi.org/10.5061/DRYAD.CRJDFN318</a>.
  ieee: B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer,
    “Social immunity modulates competition between coinfecting pathogens.” Dryad,
    2020.
  ista: Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020.
    Social immunity modulates competition between coinfecting pathogens, Dryad, <a
    href="https://doi.org/10.5061/DRYAD.CRJDFN318">10.5061/DRYAD.CRJDFN318</a>.
  mla: Milutinovic, Barbara, et al. <i>Social Immunity Modulates Competition between
    Coinfecting Pathogens</i>. Dryad, 2020, doi:<a href="https://doi.org/10.5061/DRYAD.CRJDFN318">10.5061/DRYAD.CRJDFN318</a>.
  short: B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer,
    (2020).
corr_author: '1'
date_created: 2023-05-23T16:11:22Z
date_published: 2020-12-19T00:00:00Z
date_updated: 2025-06-12T07:32:35Z
day: '19'
ddc:
- '570'
department:
- _id: SyCr
- _id: KrCh
doi: 10.5061/DRYAD.CRJDFN318
fulldoi: https://doi.org/10.5061/DRYAD.CRJDFN318
license: https://creativecommons.org/publicdomain/zero/1.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.crjdfn318
month: '12'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '7343'
    relation: used_in_publication
    status: public
status: public
title: Social immunity modulates competition between coinfecting pathogens
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '13065'
abstract:
- lang: eng
  text: Domestication is a human-induced selection process that imprints the genomes
    of domesticated populations over a short evolutionary time scale, and that occurs
    in a given demographic context. Reconstructing historical gene flow, effective
    population size changes and their timing is therefore of fundamental interest
    to understand how plant demography and human selection jointly shape genomic divergence
    during domestication. Yet, the comparison under a single statistical framework
    of independent domestication histories across different crop species has been
    little evaluated so far. Thus, it is unclear whether domestication leads to convergent
    demographic changes that similarly affect crop genomes. To address this question,
    we used existing and new transcriptome data on three crop species of Solanaceae
    (eggplant, pepper and tomato), together with their close wild relatives. We fitted
    twelve demographic models of increasing complexity on the unfolded joint allele
    frequency spectrum for each wild/crop pair, and we found evidence for both shared
    and species-specific demographic processes between species. A convergent history
    of domestication with gene-flow was inferred for all three species, along with
    evidence of strong reduction in the effective population size during the cultivation
    stage of tomato and pepper. The absence of any reduction in size of the crop in
    eggplant stands out from the classical view of the domestication process; as does
    the existence of a “protracted period” of management before cultivation. Our results
    also suggest divergent management strategies of modern cultivars among species
    as their current demography substantially differs. Finally, the timing of domestication
    is species-specific and supported by the few historical records available.
article_processing_charge: No
author:
- first_name: Stephanie
  full_name: Arnoux, Stephanie
  last_name: Arnoux
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: Christopher
  full_name: Sauvage, Christopher
  last_name: Sauvage
citation:
  ama: 'Arnoux S, Fraisse C, Sauvage C. VCF files of synonymous SNPs related to: Genomic
    inference of complex domestication histories in three Solanaceae species. 2020.
    doi:<a href="https://doi.org/10.5061/DRYAD.Q2BVQ83HD">10.5061/DRYAD.Q2BVQ83HD</a>'
  apa: 'Arnoux, S., Fraisse, C., &#38; Sauvage, C. (2020). VCF files of synonymous
    SNPs related to: Genomic inference of complex domestication histories in three
    Solanaceae species. Dryad. <a href="https://doi.org/10.5061/DRYAD.Q2BVQ83HD">https://doi.org/10.5061/DRYAD.Q2BVQ83HD</a>'
  chicago: 'Arnoux, Stephanie, Christelle Fraisse, and Christopher Sauvage. “VCF Files
    of Synonymous SNPs Related to: Genomic Inference of Complex Domestication Histories
    in Three Solanaceae Species.” Dryad, 2020. <a href="https://doi.org/10.5061/DRYAD.Q2BVQ83HD">https://doi.org/10.5061/DRYAD.Q2BVQ83HD</a>.'
  ieee: 'S. Arnoux, C. Fraisse, and C. Sauvage, “VCF files of synonymous SNPs related
    to: Genomic inference of complex domestication histories in three Solanaceae species.”
    Dryad, 2020.'
  ista: 'Arnoux S, Fraisse C, Sauvage C. 2020. VCF files of synonymous SNPs related
    to: Genomic inference of complex domestication histories in three Solanaceae species,
    Dryad, <a href="https://doi.org/10.5061/DRYAD.Q2BVQ83HD">10.5061/DRYAD.Q2BVQ83HD</a>.'
  mla: 'Arnoux, Stephanie, et al. <i>VCF Files of Synonymous SNPs Related to: Genomic
    Inference of Complex Domestication Histories in Three Solanaceae Species</i>.
    Dryad, 2020, doi:<a href="https://doi.org/10.5061/DRYAD.Q2BVQ83HD">10.5061/DRYAD.Q2BVQ83HD</a>.'
  short: S. Arnoux, C. Fraisse, C. Sauvage, (2020).
date_created: 2023-05-23T16:30:20Z
date_published: 2020-10-19T00:00:00Z
date_updated: 2026-06-18T19:37:16Z
day: '19'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5061/DRYAD.Q2BVQ83HD
fulldoi: https://doi.org/10.5061/DRYAD.Q2BVQ83HD
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.q2bvq83hd
month: '10'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  link:
  - relation: software
    url: https://github.com/starnoux/arnoux_et_al_2019
  record:
  - id: '8928'
    relation: used_in_publication
    status: public
status: public
title: 'VCF files of synonymous SNPs related to: Genomic inference of complex domestication
  histories in three Solanaceae species'
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '13070'
abstract:
- lang: eng
  text: This dataset comprises all data shown in the figures of the submitted article
    "Surpassing the resistance quantum with a geometric superinductor". Additional
    raw data are available from the corresponding author on reasonable request.
article_processing_charge: No
author:
- first_name: Matilda
  full_name: Peruzzo, Matilda
  id: 3F920B30-F248-11E8-B48F-1D18A9856A87
  last_name: Peruzzo
  orcid: 0000-0002-3415-4628
- first_name: Andrea
  full_name: Trioni, Andrea
  id: 42F71B44-F248-11E8-B48F-1D18A9856A87
  last_name: Trioni
- first_name: Farid
  full_name: Hassani, Farid
  id: 2AED110C-F248-11E8-B48F-1D18A9856A87
  last_name: Hassani
  orcid: 0000-0001-6937-5773
- first_name: Martin
  full_name: Zemlicka, Martin
  id: 2DCF8DE6-F248-11E8-B48F-1D18A9856A87
  last_name: Zemlicka
  orcid: 0009-0005-0878-3032
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. Surpassing the resistance
    quantum with a geometric superinductor. 2020. doi:<a href="https://doi.org/10.5281/ZENODO.4052882">10.5281/ZENODO.4052882</a>
  apa: Peruzzo, M., Trioni, A., Hassani, F., Zemlicka, M., &#38; Fink, J. M. (2020).
    Surpassing the resistance quantum with a geometric superinductor. Zenodo. <a href="https://doi.org/10.5281/ZENODO.4052882">https://doi.org/10.5281/ZENODO.4052882</a>
  chicago: Peruzzo, Matilda, Andrea Trioni, Farid Hassani, Martin Zemlicka, and Johannes
    M Fink. “Surpassing the Resistance Quantum with a Geometric Superinductor.” Zenodo,
    2020. <a href="https://doi.org/10.5281/ZENODO.4052882">https://doi.org/10.5281/ZENODO.4052882</a>.
  ieee: M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, and J. M. Fink, “Surpassing
    the resistance quantum with a geometric superinductor.” Zenodo, 2020.
  ista: Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. 2020. Surpassing the
    resistance quantum with a geometric superinductor, Zenodo, <a href="https://doi.org/10.5281/ZENODO.4052882">10.5281/ZENODO.4052882</a>.
  mla: Peruzzo, Matilda, et al. <i>Surpassing the Resistance Quantum with a Geometric
    Superinductor</i>. Zenodo, 2020, doi:<a href="https://doi.org/10.5281/ZENODO.4052882">10.5281/ZENODO.4052882</a>.
  short: M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, J.M. Fink, (2020).
corr_author: '1'
date_created: 2023-05-23T16:42:30Z
date_published: 2020-09-27T00:00:00Z
date_updated: 2026-04-15T06:43:02Z
day: '27'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.5281/ZENODO.4052882
fulldoi: https://doi.org/10.5281/ZENODO.4052882
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.4052883
month: '09'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '8755'
    relation: used_in_publication
    status: public
status: public
title: Surpassing the resistance quantum with a geometric superinductor
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '13071'
abstract:
- lang: eng
  text: This dataset comprises all data shown in the plots of the main part of the
    submitted article "Bidirectional Electro-Optic Wavelength Conversion in the Quantum
    Ground State". Additional raw data are available from the corresponding author
    on reasonable request.
article_processing_charge: No
author:
- first_name: William J
  full_name: Hease, William J
  id: 29705398-F248-11E8-B48F-1D18A9856A87
  last_name: Hease
  orcid: 0000-0001-9868-2166
- first_name: Alfredo R
  full_name: Rueda Sanchez, Alfredo R
  id: 3B82B0F8-F248-11E8-B48F-1D18A9856A87
  last_name: Rueda Sanchez
  orcid: 0000-0001-6249-5860
- first_name: Rishabh
  full_name: Sahu, Rishabh
  id: 47D26E34-F248-11E8-B48F-1D18A9856A87
  last_name: Sahu
  orcid: 0000-0001-6264-2162
- first_name: Matthias
  full_name: Wulf, Matthias
  id: 45598606-F248-11E8-B48F-1D18A9856A87
  last_name: Wulf
  orcid: 0000-0001-6613-1378
- first_name: Georg M
  full_name: Arnold, Georg M
  id: 3770C838-F248-11E8-B48F-1D18A9856A87
  last_name: Arnold
  orcid: 0000-0003-1397-7876
- first_name: Harald
  full_name: Schwefel, Harald
  last_name: Schwefel
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: Hease WJ, Rueda Sanchez AR, Sahu R, et al. Bidirectional electro-optic wavelength
    conversion in the quantum ground state. 2020. doi:<a href="https://doi.org/10.5281/ZENODO.4266025">10.5281/ZENODO.4266025</a>
  apa: Hease, W. J., Rueda Sanchez, A. R., Sahu, R., Wulf, M., Arnold, G. M., Schwefel,
    H., &#38; Fink, J. M. (2020). Bidirectional electro-optic wavelength conversion
    in the quantum ground state. Zenodo. <a href="https://doi.org/10.5281/ZENODO.4266025">https://doi.org/10.5281/ZENODO.4266025</a>
  chicago: Hease, William J, Alfredo R Rueda Sanchez, Rishabh Sahu, Matthias Wulf,
    Georg M Arnold, Harald Schwefel, and Johannes M Fink. “Bidirectional Electro-Optic
    Wavelength Conversion in the Quantum Ground State.” Zenodo, 2020. <a href="https://doi.org/10.5281/ZENODO.4266025">https://doi.org/10.5281/ZENODO.4266025</a>.
  ieee: W. J. Hease <i>et al.</i>, “Bidirectional electro-optic wavelength conversion
    in the quantum ground state.” Zenodo, 2020.
  ista: Hease WJ, Rueda Sanchez AR, Sahu R, Wulf M, Arnold GM, Schwefel H, Fink JM.
    2020. Bidirectional electro-optic wavelength conversion in the quantum ground
    state, Zenodo, <a href="https://doi.org/10.5281/ZENODO.4266025">10.5281/ZENODO.4266025</a>.
  mla: Hease, William J., et al. <i>Bidirectional Electro-Optic Wavelength Conversion
    in the Quantum Ground State</i>. Zenodo, 2020, doi:<a href="https://doi.org/10.5281/ZENODO.4266025">10.5281/ZENODO.4266025</a>.
  short: W.J. Hease, A.R. Rueda Sanchez, R. Sahu, M. Wulf, G.M. Arnold, H. Schwefel,
    J.M. Fink, (2020).
corr_author: '1'
date_created: 2023-05-23T16:44:11Z
date_published: 2020-11-10T00:00:00Z
date_updated: 2026-04-15T06:43:26Z
day: '10'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.5281/ZENODO.4266025
fulldoi: https://doi.org/10.5281/ZENODO.4266025
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.4266026
month: '11'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '9114'
    relation: used_in_publication
    status: public
status: public
title: Bidirectional electro-optic wavelength conversion in the quantum ground state
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '13073'
abstract:
- lang: eng
  text: The Mytilus complex of marine mussel species forms a mosaic of hybrid zones,
    found across temperate regions of the globe. This allows us to study "replicated"
    instances of secondary contact between closely-related species. Previous work
    on this complex has shown that local introgression is both widespread and highly
    heterogeneous, and has identified SNPs that are outliers of differentiation between
    lineages. Here, we developed an ancestry-informative panel of such SNPs. We then
    compared their frequencies in newly-sampled populations, including samples from
    within the hybrid zones, and parental populations at different distances from
    the contact. Results show that close to the hybrid zones, some outlier loci are
    near to fixation for the heterospecific allele, suggesting enhanced local introgression,
    or the local sweep of a shared ancestral allele. Conversely, genomic cline analyses,
    treating local parental populations as the reference, reveal a globally high concordance
    among loci, albeit with a few signals of asymmetric introgression. Enhanced local
    introgression at specific loci is consistent with the early transfer of adaptive
    variants after contact, possibly including asymmetric bi-stable variants (Dobzhansky-Muller
    incompatibilities), or haplotypes loaded with fewer deleterious mutations. Having
    escaped one barrier, however, these variants can be trapped or delayed at the
    next barrier, confining the introgression locally. These results shed light on
    the decay of species barriers during phases of contact.
article_processing_charge: No
author:
- first_name: Alexis
  full_name: Simon, Alexis
  last_name: Simon
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: Tahani
  full_name: El Ayari, Tahani
  last_name: El Ayari
- first_name: Cathy
  full_name: Liautard-Haag, Cathy
  last_name: Liautard-Haag
- first_name: Petr
  full_name: Strelkov, Petr
  last_name: Strelkov
- first_name: John
  full_name: Welch, John
  last_name: Welch
- first_name: Nicolas
  full_name: Bierne, Nicolas
  last_name: Bierne
citation:
  ama: Simon A, Fraisse C, El Ayari T, et al. How do species barriers decay? concordance
    and local introgression in mosaic hybrid zones of mussels. 2020. doi:<a href="https://doi.org/10.5061/DRYAD.R4XGXD29N">10.5061/DRYAD.R4XGXD29N</a>
  apa: Simon, A., Fraisse, C., El Ayari, T., Liautard-Haag, C., Strelkov, P., Welch,
    J., &#38; Bierne, N. (2020). How do species barriers decay? concordance and local
    introgression in mosaic hybrid zones of mussels. Dryad. <a href="https://doi.org/10.5061/DRYAD.R4XGXD29N">https://doi.org/10.5061/DRYAD.R4XGXD29N</a>
  chicago: Simon, Alexis, Christelle Fraisse, Tahani El Ayari, Cathy Liautard-Haag,
    Petr Strelkov, John Welch, and Nicolas Bierne. “How Do Species Barriers Decay?
    Concordance and Local Introgression in Mosaic Hybrid Zones of Mussels.” Dryad,
    2020. <a href="https://doi.org/10.5061/DRYAD.R4XGXD29N">https://doi.org/10.5061/DRYAD.R4XGXD29N</a>.
  ieee: A. Simon <i>et al.</i>, “How do species barriers decay? concordance and local
    introgression in mosaic hybrid zones of mussels.” Dryad, 2020.
  ista: Simon A, Fraisse C, El Ayari T, Liautard-Haag C, Strelkov P, Welch J, Bierne
    N. 2020. How do species barriers decay? concordance and local introgression in
    mosaic hybrid zones of mussels, Dryad, <a href="https://doi.org/10.5061/DRYAD.R4XGXD29N">10.5061/DRYAD.R4XGXD29N</a>.
  mla: Simon, Alexis, et al. <i>How Do Species Barriers Decay? Concordance and Local
    Introgression in Mosaic Hybrid Zones of Mussels</i>. Dryad, 2020, doi:<a href="https://doi.org/10.5061/DRYAD.R4XGXD29N">10.5061/DRYAD.R4XGXD29N</a>.
  short: A. Simon, C. Fraisse, T. El Ayari, C. Liautard-Haag, P. Strelkov, J. Welch,
    N. Bierne, (2020).
date_created: 2023-05-23T16:48:27Z
date_published: 2020-09-22T00:00:00Z
date_updated: 2025-07-10T12:01:22Z
day: '22'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5061/DRYAD.R4XGXD29N
fulldoi: https://doi.org/10.5061/DRYAD.R4XGXD29N
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.r4xgxd29n
month: '09'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '8708'
    relation: used_in_publication
    status: public
status: public
title: How do species barriers decay? concordance and local introgression in mosaic
  hybrid zones of mussels
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '13341'
abstract:
- lang: eng
  text: "Scanning nanoscale superconducting quantum interference devices (nanoSQUIDs)\r\nare
    of growing interest for highly sensitive quantitative imaging of magnetic,\r\nspintronic,
    and transport properties of low-dimensional systems. Utilizing\r\nspecifically
    designed grooved quartz capillaries pulled into a sharp pipette,\r\nwe have fabricated
    the smallest SQUID-on-tip (SOT) devices with effective\r\ndiameters down to 39
    nm. Integration of a resistive shunt in close proximity to\r\nthe pipette apex
    combined with self-aligned deposition of In and Sn, have\r\nresulted in SOT with
    a flux noise of 42 n$\\Phi_0$Hz$^{-1/2}$, yielding a record\r\nlow spin noise
    of 0.29 $\\mu_B$Hz$^{-1/2}$. In addition, the new SOTs function\r\nat sub-Kelvin
    temperatures and in high magnetic fields of over 2.5 T.\r\nIntegrating the SOTs
    into a scanning probe microscope allowed us to image the\r\nstray field of a single
    Fe$_3$O$_4$ nanocube at 300 mK. Our results show that\r\nthe easy magnetization
    axis direction undergoes a transition from the (111)\r\ndirection at room temperature
    to an in-plane orientation, which could be\r\nattributed to the Verwey phase transition
    in Fe$_3$O$_4$."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Y.
  full_name: Anahory, Y.
  last_name: Anahory
- first_name: H. R.
  full_name: Naren, H. R.
  last_name: Naren
- first_name: E. O.
  full_name: Lachman, E. O.
  last_name: Lachman
- first_name: S. Buhbut
  full_name: Sinai, S. Buhbut
  last_name: Sinai
- first_name: A.
  full_name: Uri, A.
  last_name: Uri
- first_name: L.
  full_name: Embon, L.
  last_name: Embon
- first_name: E.
  full_name: Yaakobi, E.
  last_name: Yaakobi
- first_name: Y.
  full_name: Myasoedov, Y.
  last_name: Myasoedov
- first_name: M. E.
  full_name: Huber, M. E.
  last_name: Huber
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: E.
  full_name: Zeldov, E.
  last_name: Zeldov
citation:
  ama: Anahory Y, Naren HR, Lachman EO, et al. SQUID-on-tip with single-electron spin
    sensitivity for high-field and ultra-low temperature nanomagnetic imaging. <i>Nanoscale</i>.
    2020;12(5):3174-3182. doi:<a href="https://doi.org/10.1039/C9NR08578E">10.1039/C9NR08578E</a>
  apa: Anahory, Y., Naren, H. R., Lachman, E. O., Sinai, S. B., Uri, A., Embon, L.,
    … Zeldov, E. (2020). SQUID-on-tip with single-electron spin sensitivity for high-field
    and ultra-low temperature nanomagnetic imaging. <i>Nanoscale</i>. Royal Society
    of Chemistry. <a href="https://doi.org/10.1039/C9NR08578E">https://doi.org/10.1039/C9NR08578E</a>
  chicago: Anahory, Y., H. R. Naren, E. O. Lachman, S. Buhbut Sinai, A. Uri, L. Embon,
    E. Yaakobi, et al. “SQUID-on-Tip with Single-Electron Spin Sensitivity for High-Field
    and Ultra-Low Temperature Nanomagnetic Imaging.” <i>Nanoscale</i>. Royal Society
    of Chemistry, 2020. <a href="https://doi.org/10.1039/C9NR08578E">https://doi.org/10.1039/C9NR08578E</a>.
  ieee: Y. Anahory <i>et al.</i>, “SQUID-on-tip with single-electron spin sensitivity
    for high-field and ultra-low temperature nanomagnetic imaging,” <i>Nanoscale</i>,
    vol. 12, no. 5. Royal Society of Chemistry, pp. 3174–3182, 2020.
  ista: Anahory Y, Naren HR, Lachman EO, Sinai SB, Uri A, Embon L, Yaakobi E, Myasoedov
    Y, Huber ME, Klajn R, Zeldov E. 2020. SQUID-on-tip with single-electron spin sensitivity
    for high-field and ultra-low temperature nanomagnetic imaging. Nanoscale. 12(5),
    3174–3182.
  mla: Anahory, Y., et al. “SQUID-on-Tip with Single-Electron Spin Sensitivity for
    High-Field and Ultra-Low Temperature Nanomagnetic Imaging.” <i>Nanoscale</i>,
    vol. 12, no. 5, Royal Society of Chemistry, 2020, pp. 3174–82, doi:<a href="https://doi.org/10.1039/C9NR08578E">10.1039/C9NR08578E</a>.
  short: Y. Anahory, H.R. Naren, E.O. Lachman, S.B. Sinai, A. Uri, L. Embon, E. Yaakobi,
    Y. Myasoedov, M.E. Huber, R. Klajn, E. Zeldov, Nanoscale 12 (2020) 3174–3182.
date_created: 2023-08-01T08:27:12Z
date_published: 2020-01-10T00:00:00Z
date_updated: 2023-08-02T09:35:52Z
day: '10'
doi: 10.1039/C9NR08578E
extern: '1'
external_id:
  arxiv:
  - '2001.03342'
fulldoi: https://doi.org/10.1039/C9NR08578E
intvolume: '        12'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2001.03342
month: '01'
oa: 1
oa_version: Preprint
page: 3174-3182
publication: Nanoscale
publication_identifier:
  eissn:
  - 2040-3372
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: SQUID-on-tip with single-electron spin sensitivity for high-field and ultra-low
  temperature nanomagnetic imaging
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2020'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21083'
abstract:
- lang: eng
  text: Helically folded aromatic oligoamide foldamers have a size and geometrical
    parameters very distinct from those of α‐helices and are not obvious candidates
    for α‐helix mimicry. Nevertheless, they offer multiple sites for attaching side
    chains. It was found that some arrays of side chains at the surface of an aromatic
    helix make it possible to mimic extended α‐helical surfaces. Synthetic methods
    were developed to produce quinoline monomers suitably functionalized for solid
    phase synthesis. A dodecamer was prepared. Its crystal structure validated the
    initial design and showed helix bundling involving the α‐helix‐like interface.
    These results open up new uses of aromatic helices to recognize protein surfaces
    and to program helix bundling in water.
article_processing_charge: No
article_type: original
author:
- first_name: Márton
  full_name: Zwillinger, Márton
  last_name: Zwillinger
- first_name: Post Sai
  full_name: Reddy, Post Sai
  last_name: Reddy
- first_name: Barbara
  full_name: Wicher, Barbara
  last_name: Wicher
- first_name: Pradeep K
  full_name: Mandal, Pradeep K
  id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
  last_name: Mandal
  orcid: 0000-0001-5996-956X
- first_name: Márton
  full_name: Csékei, Márton
  last_name: Csékei
- first_name: Lucile
  full_name: Fischer, Lucile
  last_name: Fischer
- first_name: András
  full_name: Kotschy, András
  last_name: Kotschy
- first_name: Ivan
  full_name: Huc, Ivan
  last_name: Huc
citation:
  ama: Zwillinger M, Reddy PS, Wicher B, et al. Aromatic foldamer helices as α‐helix
    extended surface mimetics. <i>Chemistry – A European Journal</i>. 2020;26(72):17366-17370.
    doi:<a href="https://doi.org/10.1002/chem.202004064">10.1002/chem.202004064</a>
  apa: Zwillinger, M., Reddy, P. S., Wicher, B., Mandal, P. K., Csékei, M., Fischer,
    L., … Huc, I. (2020). Aromatic foldamer helices as α‐helix extended surface mimetics.
    <i>Chemistry – A European Journal</i>. Wiley. <a href="https://doi.org/10.1002/chem.202004064">https://doi.org/10.1002/chem.202004064</a>
  chicago: Zwillinger, Márton, Post Sai Reddy, Barbara Wicher, Pradeep K Mandal, Márton
    Csékei, Lucile Fischer, András Kotschy, and Ivan Huc. “Aromatic Foldamer Helices
    as Α‐helix Extended Surface Mimetics.” <i>Chemistry – A European Journal</i>.
    Wiley, 2020. <a href="https://doi.org/10.1002/chem.202004064">https://doi.org/10.1002/chem.202004064</a>.
  ieee: M. Zwillinger <i>et al.</i>, “Aromatic foldamer helices as α‐helix extended
    surface mimetics,” <i>Chemistry – A European Journal</i>, vol. 26, no. 72. Wiley,
    pp. 17366–17370, 2020.
  ista: Zwillinger M, Reddy PS, Wicher B, Mandal PK, Csékei M, Fischer L, Kotschy
    A, Huc I. 2020. Aromatic foldamer helices as α‐helix extended surface mimetics.
    Chemistry – A European Journal. 26(72), 17366–17370.
  mla: Zwillinger, Márton, et al. “Aromatic Foldamer Helices as Α‐helix Extended Surface
    Mimetics.” <i>Chemistry – A European Journal</i>, vol. 26, no. 72, Wiley, 2020,
    pp. 17366–70, doi:<a href="https://doi.org/10.1002/chem.202004064">10.1002/chem.202004064</a>.
  short: M. Zwillinger, P.S. Reddy, B. Wicher, P.K. Mandal, M. Csékei, L. Fischer,
    A. Kotschy, I. Huc, Chemistry – A European Journal 26 (2020) 17366–17370.
date_created: 2026-01-29T15:31:13Z
date_published: 2020-09-10T00:00:00Z
date_updated: 2026-02-20T06:53:53Z
day: '10'
ddc:
- '540'
doi: 10.1002/chem.202004064
extern: '1'
fulldoi: https://doi.org/10.1002/chem.202004064
has_accepted_license: '1'
intvolume: '        26'
issue: '72'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/chem.202004064
month: '09'
oa: 1
oa_version: Published Version
page: 17366-17370
publication: Chemistry – A European Journal
publication_identifier:
  eissn:
  - 1521-3765
  issn:
  - 0947-6539
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Aromatic foldamer helices as α‐helix extended surface mimetics
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2020'
...
---
OA_place: repository
OA_type: green
_id: '21084'
abstract:
- lang: eng
  text: Self-assembly is a powerful method to obtain large discrete functional molecular
    architectures. When using a single building block, self-assembly generally yields
    symmetrical objects in which all the subunits relate similarly to their neighbours.
    Here we report the discovery of a family of self-constructing cyclic macromolecules
    with stable folded conformations of low symmetry, which include some with a prime
    number (13, 17 and 23) of units, despite being formed from a single component.
    The formation of these objects amounts to the production of polymers with a perfectly
    uniform length. Design rules for the spontaneous emergence of such macromolecules
    include endowing monomers with a strong potential for non-covalent interactions
    that remain frustrated in competing entropically favoured yet conformationally
    restrained smaller cycles. The process can also be templated by a guest molecule
    that itself has an asymmetrical structure, which paves the way to molecular imprinting
    techniques at the level of single polymer chains.
article_processing_charge: No
article_type: original
author:
- first_name: Charalampos G.
  full_name: Pappas, Charalampos G.
  last_name: Pappas
- first_name: Pradeep K
  full_name: Mandal, Pradeep K
  id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
  last_name: Mandal
  orcid: 0000-0001-5996-956X
- first_name: Bin
  full_name: Liu, Bin
  last_name: Liu
- first_name: Brice
  full_name: Kauffmann, Brice
  last_name: Kauffmann
- first_name: Xiaoming
  full_name: Miao, Xiaoming
  last_name: Miao
- first_name: Dávid
  full_name: Komáromy, Dávid
  last_name: Komáromy
- first_name: Waldemar
  full_name: Hoffmann, Waldemar
  last_name: Hoffmann
- first_name: Christian
  full_name: Manz, Christian
  last_name: Manz
- first_name: Rayoon
  full_name: Chang, Rayoon
  last_name: Chang
- first_name: Kai
  full_name: Liu, Kai
  last_name: Liu
- first_name: Kevin
  full_name: Pagel, Kevin
  last_name: Pagel
- first_name: Ivan
  full_name: Huc, Ivan
  last_name: Huc
- first_name: Sijbren
  full_name: Otto, Sijbren
  last_name: Otto
citation:
  ama: Pappas CG, Mandal PK, Liu B, et al. Emergence of low-symmetry foldamers from
    single monomers. <i>Nature Chemistry</i>. 2020;12(12):1180-1186. doi:<a href="https://doi.org/10.1038/s41557-020-00565-2">10.1038/s41557-020-00565-2</a>
  apa: Pappas, C. G., Mandal, P. K., Liu, B., Kauffmann, B., Miao, X., Komáromy, D.,
    … Otto, S. (2020). Emergence of low-symmetry foldamers from single monomers. <i>Nature
    Chemistry</i>. Springer Nature. <a href="https://doi.org/10.1038/s41557-020-00565-2">https://doi.org/10.1038/s41557-020-00565-2</a>
  chicago: Pappas, Charalampos G., Pradeep K Mandal, Bin Liu, Brice Kauffmann, Xiaoming
    Miao, Dávid Komáromy, Waldemar Hoffmann, et al. “Emergence of Low-Symmetry Foldamers
    from Single Monomers.” <i>Nature Chemistry</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s41557-020-00565-2">https://doi.org/10.1038/s41557-020-00565-2</a>.
  ieee: C. G. Pappas <i>et al.</i>, “Emergence of low-symmetry foldamers from single
    monomers,” <i>Nature Chemistry</i>, vol. 12, no. 12. Springer Nature, pp. 1180–1186,
    2020.
  ista: Pappas CG, Mandal PK, Liu B, Kauffmann B, Miao X, Komáromy D, Hoffmann W,
    Manz C, Chang R, Liu K, Pagel K, Huc I, Otto S. 2020. Emergence of low-symmetry
    foldamers from single monomers. Nature Chemistry. 12(12), 1180–1186.
  mla: Pappas, Charalampos G., et al. “Emergence of Low-Symmetry Foldamers from Single
    Monomers.” <i>Nature Chemistry</i>, vol. 12, no. 12, Springer Nature, 2020, pp.
    1180–86, doi:<a href="https://doi.org/10.1038/s41557-020-00565-2">10.1038/s41557-020-00565-2</a>.
  short: C.G. Pappas, P.K. Mandal, B. Liu, B. Kauffmann, X. Miao, D. Komáromy, W.
    Hoffmann, C. Manz, R. Chang, K. Liu, K. Pagel, I. Huc, S. Otto, Nature Chemistry
    12 (2020) 1180–1186.
date_created: 2026-01-29T15:32:38Z
date_published: 2020-11-20T00:00:00Z
date_updated: 2026-02-23T11:46:11Z
day: '20'
doi: 10.1038/s41557-020-00565-2
extern: '1'
external_id:
  pmid:
  - '33219361 '
fulldoi: https://doi.org/10.1038/s41557-020-00565-2
has_accepted_license: '1'
intvolume: '        12'
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.26434/chemrxiv.10079186
month: '11'
oa: 1
oa_version: Preprint
page: 1180-1186
pmid: 1
publication: Nature Chemistry
publication_identifier:
  eissn:
  - 1755-4349
  issn:
  - 1755-4330
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Emergence of low-symmetry foldamers from single monomers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2020'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21085'
abstract:
- lang: eng
  text: Foldamers combining aliphatic and aromatic main-chain units often produce
    atypical structures that cannot easily be accessed from purely aromatic or aliphatic
    sequences. We report solid-state evidence that sequences comprising α-amino acids
    and quinoline-based monomers adopt conformations that combine the folding propensities
    of both components. Foldamers 2 and 3 having an XQQ repeat motif (X=α-amino acid,
    Q=quinoline) were synthesized. Crystals of 2 (X=Phe, Q with an anionic side chain)
    obtained from water revealed an aromatic helix where amide groups belonging to
    the α-amino acids created a hydrogen-bond array typical of peptidic helices. Crystals
    of 3 (X=Ser, Q with a lipophilic side chain) obtained from organic solvents revealed
    a helix-turn-helix structure in which α-amino acid side chains interfere with
    main-chain hydrogen bonding. High sequence-dependency of the conformation is typical
    of peptides but is shown here to include aromatic folding features.
article_processing_charge: No
article_type: original
author:
- first_name: Xiaobo
  full_name: Hu, Xiaobo
  last_name: Hu
- first_name: Pradeep K
  full_name: Mandal, Pradeep K
  id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
  last_name: Mandal
  orcid: 0000-0001-5996-956X
- first_name: Brice
  full_name: Kauffmann, Brice
  last_name: Kauffmann
- first_name: Ivan
  full_name: Huc, Ivan
  last_name: Huc
citation:
  ama: Hu X, Mandal PK, Kauffmann B, Huc I. Hybrid sequences that express both aromatic
    amide and α‐peptidic folding features. <i>ChemPlusChem</i>. 2020;85(7):1580-1586.
    doi:<a href="https://doi.org/10.1002/cplu.202000416">10.1002/cplu.202000416</a>
  apa: Hu, X., Mandal, P. K., Kauffmann, B., &#38; Huc, I. (2020). Hybrid sequences
    that express both aromatic amide and α‐peptidic folding features. <i>ChemPlusChem</i>.
    Wiley. <a href="https://doi.org/10.1002/cplu.202000416">https://doi.org/10.1002/cplu.202000416</a>
  chicago: Hu, Xiaobo, Pradeep K Mandal, Brice Kauffmann, and Ivan Huc. “Hybrid Sequences
    That Express Both Aromatic Amide and Α‐peptidic Folding Features.” <i>ChemPlusChem</i>.
    Wiley, 2020. <a href="https://doi.org/10.1002/cplu.202000416">https://doi.org/10.1002/cplu.202000416</a>.
  ieee: X. Hu, P. K. Mandal, B. Kauffmann, and I. Huc, “Hybrid sequences that express
    both aromatic amide and α‐peptidic folding features,” <i>ChemPlusChem</i>, vol.
    85, no. 7. Wiley, pp. 1580–1586, 2020.
  ista: Hu X, Mandal PK, Kauffmann B, Huc I. 2020. Hybrid sequences that express both
    aromatic amide and α‐peptidic folding features. ChemPlusChem. 85(7), 1580–1586.
  mla: Hu, Xiaobo, et al. “Hybrid Sequences That Express Both Aromatic Amide and Α‐peptidic
    Folding Features.” <i>ChemPlusChem</i>, vol. 85, no. 7, Wiley, 2020, pp. 1580–86,
    doi:<a href="https://doi.org/10.1002/cplu.202000416">10.1002/cplu.202000416</a>.
  short: X. Hu, P.K. Mandal, B. Kauffmann, I. Huc, ChemPlusChem 85 (2020) 1580–1586.
date_created: 2026-01-29T15:34:50Z
date_published: 2020-07-06T00:00:00Z
date_updated: 2026-02-20T06:51:31Z
day: '06'
doi: 10.1002/cplu.202000416
extern: '1'
external_id:
  pmid:
  - '32729681'
fulldoi: https://doi.org/10.1002/cplu.202000416
has_accepted_license: '1'
intvolume: '        85'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/cplu.202000416
month: '07'
oa: 1
oa_version: Published Version
page: 1580-1586
pmid: 1
publication: ChemPlusChem
publication_identifier:
  eissn:
  - 2192-6506
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hybrid sequences that express both aromatic amide and α‐peptidic folding features
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 85
year: '2020'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21525'
abstract:
- lang: eng
  text: We present a novel design for an ultracompact, passive light source capable
    of generating ultraviolet and X-ray radiation, based on the interaction of free
    electrons with the magnetic near-field of a ferromagnet. Our design is motivated
    by recent advances in the fabrication of nanostructures, which allow the confinement
    of large magnetic fields at the surface of ferromagnetic nanogratings. Using ab
    initio simulations and a complementary analytical theory, we show that highly
    directional, tunable, monochromatic radiation at high frequencies could be produced
    from relatively low-energy electrons within a tabletop design. The output frequency
    is tunable in the extreme ultraviolet to hard X-ray range via electron kinetic
    energies from 1 keV to 5 MeV and nanograting periods from 1 μm to 5 nm. The proposed
    radiation source can achieve the tunability and monochromaticity of current free-electron-driven
    sources (free-electron lasers, synchrotrons, and laser-driven undulators), yet
    with a significantly reduced scale, cost, and complexity. Our design could help
    realize the next generation of tabletop or on-chip X-ray sources.
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Sophie
  full_name: Fisher, Sophie
  last_name: Fisher
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Nicholas
  full_name: Rivera, Nicholas
  last_name: Rivera
- first_name: Liang Jie
  full_name: Wong, Liang Jie
  last_name: Wong
- first_name: Ido
  full_name: Kaminer, Ido
  last_name: Kaminer
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
citation:
  ama: Fisher S, Roques-Carmes C, Rivera N, Wong LJ, Kaminer I, Soljačić M. Monochromatic
    X-ray source based on scattering from a magnetic nanoundulator. <i>ACS Photonics</i>.
    2020;7(5):1096-1103. doi:<a href="https://doi.org/10.1021/acsphotonics.0c00121">10.1021/acsphotonics.0c00121</a>
  apa: Fisher, S., Roques-Carmes, C., Rivera, N., Wong, L. J., Kaminer, I., &#38;
    Soljačić, M. (2020). Monochromatic X-ray source based on scattering from a magnetic
    nanoundulator. <i>ACS Photonics</i>. American Chemical Society . <a href="https://doi.org/10.1021/acsphotonics.0c00121">https://doi.org/10.1021/acsphotonics.0c00121</a>
  chicago: Fisher, Sophie, Charles Roques-Carmes, Nicholas Rivera, Liang Jie Wong,
    Ido Kaminer, and Marin Soljačić. “Monochromatic X-Ray Source Based on Scattering
    from a Magnetic Nanoundulator.” <i>ACS Photonics</i>. American Chemical Society
    , 2020. <a href="https://doi.org/10.1021/acsphotonics.0c00121">https://doi.org/10.1021/acsphotonics.0c00121</a>.
  ieee: S. Fisher, C. Roques-Carmes, N. Rivera, L. J. Wong, I. Kaminer, and M. Soljačić,
    “Monochromatic X-ray source based on scattering from a magnetic nanoundulator,”
    <i>ACS Photonics</i>, vol. 7, no. 5. American Chemical Society , pp. 1096–1103,
    2020.
  ista: Fisher S, Roques-Carmes C, Rivera N, Wong LJ, Kaminer I, Soljačić M. 2020.
    Monochromatic X-ray source based on scattering from a magnetic nanoundulator.
    ACS Photonics. 7(5), 1096–1103.
  mla: Fisher, Sophie, et al. “Monochromatic X-Ray Source Based on Scattering from
    a Magnetic Nanoundulator.” <i>ACS Photonics</i>, vol. 7, no. 5, American Chemical
    Society , 2020, pp. 1096–103, doi:<a href="https://doi.org/10.1021/acsphotonics.0c00121">10.1021/acsphotonics.0c00121</a>.
  short: S. Fisher, C. Roques-Carmes, N. Rivera, L.J. Wong, I. Kaminer, M. Soljačić,
    ACS Photonics 7 (2020) 1096–1103.
date_created: 2026-03-30T12:22:47Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2026-04-15T11:51:29Z
day: '01'
ddc:
- '530'
doi: 10.1021/acsphotonics.0c00121
extern: '1'
external_id:
  arxiv:
  - '1910.09629'
  pmid:
  - ' 32596415'
fulldoi: https://doi.org/10.1021/acsphotonics.0c00121
has_accepted_license: '1'
intvolume: '         7'
issue: '5'
keyword:
- X-ray sources
- free electrons
- nanostructure
- undulator
- synchrotron
- free-electron laser
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1021/acsphotonics.0c00121
month: '04'
oa: 1
oa_version: Published Version
page: 1096-1103
pmid: 1
publication: ACS Photonics
publication_identifier:
  eissn:
  - 2330-4022
publication_status: published
publisher: 'American Chemical Society '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Monochromatic X-ray source based on scattering from a magnetic nanoundulator
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21539'
abstract:
- lang: eng
  text: The inability of conventional electronic architectures to efficiently solve
    large combinatorial problems motivates the development of novel computational
    hardware. There has been much effort toward developing application-specific hardware
    across many different fields of engineering, such as integrated circuits, memristors,
    and photonics. However, unleashing the potential of such architectures requires
    the development of algorithms which optimally exploit their fundamental properties.
    Here, we present the Photonic Recurrent Ising Sampler (PRIS), a heuristic method
    tailored for parallel architectures allowing fast and efficient sampling from
    distributions of arbitrary Ising problems. Since the PRIS relies on vector-to-fixed
    matrix multiplications, we suggest the implementation of the PRIS in photonic
    parallel networks, which realize these operations at an unprecedented speed. The
    PRIS provides sample solutions to the ground state of Ising models, by converging
    in probability to their associated Gibbs distribution. The PRIS also relies on
    intrinsic dynamic noise and eigenvalue dropout to find ground states more efficiently.
    Our work suggests speedups in heuristic methods via photonic implementations of
    the PRIS.
article_number: '249'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Yichen
  full_name: Shen, Yichen
  last_name: Shen
- first_name: Cristian
  full_name: Zanoci, Cristian
  last_name: Zanoci
- first_name: Mihika
  full_name: Prabhu, Mihika
  last_name: Prabhu
- first_name: Fadi
  full_name: Atieh, Fadi
  last_name: Atieh
- first_name: Li
  full_name: Jing, Li
  last_name: Jing
- first_name: Tena
  full_name: Dubček, Tena
  last_name: Dubček
- first_name: Chenkai
  full_name: Mao, Chenkai
  last_name: Mao
- first_name: Miles R.
  full_name: Johnson, Miles R.
  last_name: Johnson
- first_name: Vladimir
  full_name: Čeperić, Vladimir
  last_name: Čeperić
- first_name: John D.
  full_name: Joannopoulos, John D.
  last_name: Joannopoulos
- first_name: Dirk
  full_name: Englund, Dirk
  last_name: Englund
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
citation:
  ama: Roques-Carmes C, Shen Y, Zanoci C, et al. Heuristic recurrent algorithms for
    photonic Ising machines. <i>Nature Communications</i>. 2020;11. doi:<a href="https://doi.org/10.1038/s41467-019-14096-z">10.1038/s41467-019-14096-z</a>
  apa: Roques-Carmes, C., Shen, Y., Zanoci, C., Prabhu, M., Atieh, F., Jing, L., …
    Soljačić, M. (2020). Heuristic recurrent algorithms for photonic Ising machines.
    <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-019-14096-z">https://doi.org/10.1038/s41467-019-14096-z</a>
  chicago: Roques-Carmes, Charles, Yichen Shen, Cristian Zanoci, Mihika Prabhu, Fadi
    Atieh, Li Jing, Tena Dubček, et al. “Heuristic Recurrent Algorithms for Photonic
    Ising Machines.” <i>Nature Communications</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s41467-019-14096-z">https://doi.org/10.1038/s41467-019-14096-z</a>.
  ieee: C. Roques-Carmes <i>et al.</i>, “Heuristic recurrent algorithms for photonic
    Ising machines,” <i>Nature Communications</i>, vol. 11. Springer Nature, 2020.
  ista: Roques-Carmes C, Shen Y, Zanoci C, Prabhu M, Atieh F, Jing L, Dubček T, Mao
    C, Johnson MR, Čeperić V, Joannopoulos JD, Englund D, Soljačić M. 2020. Heuristic
    recurrent algorithms for photonic Ising machines. Nature Communications. 11, 249.
  mla: Roques-Carmes, Charles, et al. “Heuristic Recurrent Algorithms for Photonic
    Ising Machines.” <i>Nature Communications</i>, vol. 11, 249, Springer Nature,
    2020, doi:<a href="https://doi.org/10.1038/s41467-019-14096-z">10.1038/s41467-019-14096-z</a>.
  short: C. Roques-Carmes, Y. Shen, C. Zanoci, M. Prabhu, F. Atieh, L. Jing, T. Dubček,
    C. Mao, M.R. Johnson, V. Čeperić, J.D. Joannopoulos, D. Englund, M. Soljačić,
    Nature Communications 11 (2020).
date_created: 2026-03-30T12:22:47Z
date_published: 2020-01-14T00:00:00Z
date_updated: 2026-04-15T06:15:50Z
day: '14'
ddc:
- '530'
doi: 10.1038/s41467-019-14096-z
extern: '1'
external_id:
  arxiv:
  - '1811.02705'
fulldoi: https://doi.org/10.1038/s41467-019-14096-z
has_accepted_license: '1'
intvolume: '        11'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41467-019-14096-z
month: '01'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Heuristic recurrent algorithms for photonic Ising machines
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2020'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21554'
abstract:
- lang: eng
  text: Recent progress in artificial intelligence is largely attributed to the rapid
    development of machine learning, especially in the algorithm and neural network
    models. However, it is the performance of the hardware, in particular the energy
    efficiency of a computing system that sets the fundamental limit of the capability
    of machine learning. Data-centric computing requires a revolution in hardware
    systems, since traditional digital computers based on transistors and the von
    Neumann architecture were not purposely designed for neuromorphic computing. A
    hardware platform based on emerging devices and new architecture is the hope for
    future computing with dramatically improved throughput and energy efficiency.
    Building such a system, nevertheless, faces a number of challenges, ranging from
    materials selection, device optimization, circuit fabrication and system integration,
    to name a few. The aim of this Roadmap is to present a snapshot of emerging hardware
    technologies that are potentially beneficial for machine learning, providing the
    Nanotechnology readers with a perspective of challenges and opportunities in this
    burgeoning field.
article_number: '012002'
article_processing_charge: No
article_type: original
author:
- first_name: Karl
  full_name: Berggren, Karl
  last_name: Berggren
- first_name: Qiangfei
  full_name: Xia, Qiangfei
  last_name: Xia
- first_name: Konstantin K
  full_name: Likharev, Konstantin K
  last_name: Likharev
- first_name: Dmitri B
  full_name: Strukov, Dmitri B
  last_name: Strukov
- first_name: Hao
  full_name: Jiang, Hao
  last_name: Jiang
- first_name: Thomas
  full_name: Mikolajick, Thomas
  last_name: Mikolajick
- first_name: Damien
  full_name: Querlioz, Damien
  last_name: Querlioz
- first_name: Martin
  full_name: Salinga, Martin
  last_name: Salinga
- first_name: John R
  full_name: Erickson, John R
  last_name: Erickson
- first_name: Shuang
  full_name: Pi, Shuang
  last_name: Pi
- first_name: Feng
  full_name: Xiong, Feng
  last_name: Xiong
- first_name: Peng
  full_name: Lin, Peng
  last_name: Lin
- first_name: Can
  full_name: Li, Can
  last_name: Li
- first_name: Yu
  full_name: Chen, Yu
  last_name: Chen
- first_name: Shisheng
  full_name: Xiong, Shisheng
  last_name: Xiong
- first_name: Brian D
  full_name: Hoskins, Brian D
  last_name: Hoskins
- first_name: Matthew W
  full_name: Daniels, Matthew W
  last_name: Daniels
- first_name: Advait
  full_name: Madhavan, Advait
  last_name: Madhavan
- first_name: James A
  full_name: Liddle, James A
  last_name: Liddle
- first_name: Jabez J
  full_name: McClelland, Jabez J
  last_name: McClelland
- first_name: Yuchao
  full_name: Yang, Yuchao
  last_name: Yang
- first_name: Jennifer
  full_name: Rupp, Jennifer
  last_name: Rupp
- first_name: Stephen S
  full_name: Nonnenmann, Stephen S
  last_name: Nonnenmann
- first_name: Kwang-Ting
  full_name: Cheng, Kwang-Ting
  last_name: Cheng
- first_name: Nanbo
  full_name: Gong, Nanbo
  last_name: Gong
- first_name: Miguel Angel
  full_name: Lastras-Montaño, Miguel Angel
  last_name: Lastras-Montaño
- first_name: A Alec
  full_name: Talin, A Alec
  last_name: Talin
- first_name: Alberto
  full_name: Salleo, Alberto
  last_name: Salleo
- first_name: Bhavin J
  full_name: Shastri, Bhavin J
  last_name: Shastri
- first_name: Thomas Ferreira
  full_name: de Lima, Thomas Ferreira
  last_name: de Lima
- first_name: Paul
  full_name: Prucnal, Paul
  last_name: Prucnal
- first_name: Alexander N
  full_name: Tait, Alexander N
  last_name: Tait
- first_name: Yichen
  full_name: Shen, Yichen
  last_name: Shen
- first_name: Huaiyu
  full_name: Meng, Huaiyu
  last_name: Meng
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Zengguang
  full_name: Cheng, Zengguang
  last_name: Cheng
- first_name: Harish
  full_name: Bhaskaran, Harish
  last_name: Bhaskaran
- first_name: Deep
  full_name: Jariwala, Deep
  last_name: Jariwala
- first_name: Han
  full_name: Wang, Han
  last_name: Wang
- first_name: Jeffrey M
  full_name: Shainline, Jeffrey M
  last_name: Shainline
- first_name: Kenneth
  full_name: Segall, Kenneth
  last_name: Segall
- first_name: J Joshua
  full_name: Yang, J Joshua
  last_name: Yang
- first_name: Kaushik
  full_name: Roy, Kaushik
  last_name: Roy
- first_name: Suman
  full_name: Datta, Suman
  last_name: Datta
- first_name: Arijit
  full_name: Raychowdhury, Arijit
  last_name: Raychowdhury
citation:
  ama: Berggren K, Xia Q, Likharev KK, et al. Roadmap on emerging hardware and technology
    for machine learning. <i>Nanotechnology</i>. 2020;32(1). doi:<a href="https://doi.org/10.1088/1361-6528/aba70f">10.1088/1361-6528/aba70f</a>
  apa: Berggren, K., Xia, Q., Likharev, K. K., Strukov, D. B., Jiang, H., Mikolajick,
    T., … Raychowdhury, A. (2020). Roadmap on emerging hardware and technology for
    machine learning. <i>Nanotechnology</i>. IOP Publishing. <a href="https://doi.org/10.1088/1361-6528/aba70f">https://doi.org/10.1088/1361-6528/aba70f</a>
  chicago: Berggren, Karl, Qiangfei Xia, Konstantin K Likharev, Dmitri B Strukov,
    Hao Jiang, Thomas Mikolajick, Damien Querlioz, et al. “Roadmap on Emerging Hardware
    and Technology for Machine Learning.” <i>Nanotechnology</i>. IOP Publishing, 2020.
    <a href="https://doi.org/10.1088/1361-6528/aba70f">https://doi.org/10.1088/1361-6528/aba70f</a>.
  ieee: K. Berggren <i>et al.</i>, “Roadmap on emerging hardware and technology for
    machine learning,” <i>Nanotechnology</i>, vol. 32, no. 1. IOP Publishing, 2020.
  ista: Berggren K, Xia Q, Likharev KK, Strukov DB, Jiang H, Mikolajick T, Querlioz
    D, Salinga M, Erickson JR, Pi S, Xiong F, Lin P, Li C, Chen Y, Xiong S, Hoskins
    BD, Daniels MW, Madhavan A, Liddle JA, McClelland JJ, Yang Y, Rupp J, Nonnenmann
    SS, Cheng K-T, Gong N, Lastras-Montaño MA, Talin AA, Salleo A, Shastri BJ, de
    Lima TF, Prucnal P, Tait AN, Shen Y, Meng H, Roques-Carmes C, Cheng Z, Bhaskaran
    H, Jariwala D, Wang H, Shainline JM, Segall K, Yang JJ, Roy K, Datta S, Raychowdhury
    A. 2020. Roadmap on emerging hardware and technology for machine learning. Nanotechnology.
    32(1), 012002.
  mla: Berggren, Karl, et al. “Roadmap on Emerging Hardware and Technology for Machine
    Learning.” <i>Nanotechnology</i>, vol. 32, no. 1, 012002, IOP Publishing, 2020,
    doi:<a href="https://doi.org/10.1088/1361-6528/aba70f">10.1088/1361-6528/aba70f</a>.
  short: K. Berggren, Q. Xia, K.K. Likharev, D.B. Strukov, H. Jiang, T. Mikolajick,
    D. Querlioz, M. Salinga, J.R. Erickson, S. Pi, F. Xiong, P. Lin, C. Li, Y. Chen,
    S. Xiong, B.D. Hoskins, M.W. Daniels, A. Madhavan, J.A. Liddle, J.J. McClelland,
    Y. Yang, J. Rupp, S.S. Nonnenmann, K.-T. Cheng, N. Gong, M.A. Lastras-Montaño,
    A.A. Talin, A. Salleo, B.J. Shastri, T.F. de Lima, P. Prucnal, A.N. Tait, Y. Shen,
    H. Meng, C. Roques-Carmes, Z. Cheng, H. Bhaskaran, D. Jariwala, H. Wang, J.M.
    Shainline, K. Segall, J.J. Yang, K. Roy, S. Datta, A. Raychowdhury, Nanotechnology
    32 (2020).
date_created: 2026-03-30T12:22:47Z
date_published: 2020-10-19T00:00:00Z
date_updated: 2026-04-15T06:55:27Z
day: '19'
ddc:
- '530'
doi: 10.1088/1361-6528/aba70f
extern: '1'
external_id:
  pmid:
  - '32679577'
fulldoi: https://doi.org/10.1088/1361-6528/aba70f
intvolume: '        32'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1088/1361-6528/aba70f
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nanotechnology
publication_identifier:
  eissn:
  - 1361-6528
  issn:
  - 0957-4484
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Roadmap on emerging hardware and technology for machine learning
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21637'
abstract:
- lang: eng
  text: We demonstrate new axisymmetric inverse-design techniques that can solve problems
    radically different from traditional lenses, including reconfigurable lenses (that
    shift a multi-frequency focal spot in response to refractive-index changes) and
    widely separated multi-wavelength lenses (λ = 1 µm and 10 µm). We also present
    experimental validation for an axisymmetric inverse-designed monochrome lens in
    the near-infrared fabricated via two-photon polymerization. Axisymmetry allows
    fullwave Maxwell solvers to be scaled up to structures hundreds or even thousands
    of wavelengths in diameter before requiring domain-decomposition approximations,
    while multilayer topology optimization with ∼105 degrees of freedom can tackle
    challenging design problems even when restricted to axisymmetric structures.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rasmus E.
  full_name: Christiansen, Rasmus E.
  last_name: Christiansen
- first_name: Zin
  full_name: Lin, Zin
  last_name: Lin
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Yannick
  full_name: Salamin, Yannick
  last_name: Salamin
- first_name: Steven E.
  full_name: Kooi, Steven E.
  last_name: Kooi
- first_name: John D.
  full_name: Joannopoulos, John D.
  last_name: Joannopoulos
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
- first_name: Steven G.
  full_name: Johnson, Steven G.
  last_name: Johnson
citation:
  ama: Christiansen RE, Lin Z, Roques-Carmes C, et al. Fullwave Maxwell inverse design
    of axisymmetric, tunable, and multi-scale multi-wavelength metalenses. <i>Optics
    Express</i>. 2020;28(23):33854-33868. doi:<a href="https://doi.org/10.1364/oe.403192">10.1364/oe.403192</a>
  apa: Christiansen, R. E., Lin, Z., Roques-Carmes, C., Salamin, Y., Kooi, S. E.,
    Joannopoulos, J. D., … Johnson, S. G. (2020). Fullwave Maxwell inverse design
    of axisymmetric, tunable, and multi-scale multi-wavelength metalenses. <i>Optics
    Express</i>. Optica Publishing Group. <a href="https://doi.org/10.1364/oe.403192">https://doi.org/10.1364/oe.403192</a>
  chicago: Christiansen, Rasmus E., Zin Lin, Charles Roques-Carmes, Yannick Salamin,
    Steven E. Kooi, John D. Joannopoulos, Marin Soljačić, and Steven G. Johnson. “Fullwave
    Maxwell Inverse Design of Axisymmetric, Tunable, and Multi-Scale Multi-Wavelength
    Metalenses.” <i>Optics Express</i>. Optica Publishing Group, 2020. <a href="https://doi.org/10.1364/oe.403192">https://doi.org/10.1364/oe.403192</a>.
  ieee: R. E. Christiansen <i>et al.</i>, “Fullwave Maxwell inverse design of axisymmetric,
    tunable, and multi-scale multi-wavelength metalenses,” <i>Optics Express</i>,
    vol. 28, no. 23. Optica Publishing Group, pp. 33854–33868, 2020.
  ista: Christiansen RE, Lin Z, Roques-Carmes C, Salamin Y, Kooi SE, Joannopoulos
    JD, Soljačić M, Johnson SG. 2020. Fullwave Maxwell inverse design of axisymmetric,
    tunable, and multi-scale multi-wavelength metalenses. Optics Express. 28(23),
    33854–33868.
  mla: Christiansen, Rasmus E., et al. “Fullwave Maxwell Inverse Design of Axisymmetric,
    Tunable, and Multi-Scale Multi-Wavelength Metalenses.” <i>Optics Express</i>,
    vol. 28, no. 23, Optica Publishing Group, 2020, pp. 33854–68, doi:<a href="https://doi.org/10.1364/oe.403192">10.1364/oe.403192</a>.
  short: R.E. Christiansen, Z. Lin, C. Roques-Carmes, Y. Salamin, S.E. Kooi, J.D.
    Joannopoulos, M. Soljačić, S.G. Johnson, Optics Express 28 (2020) 33854–33868.
date_created: 2026-03-30T12:22:48Z
date_published: 2020-10-26T00:00:00Z
date_updated: 2026-04-27T07:08:18Z
day: '26'
ddc:
- '530'
doi: 10.1364/oe.403192
extern: '1'
external_id:
  arxiv:
  - '2007.11661'
  pmid:
  - '33182865'
fulldoi: https://doi.org/10.1364/oe.403192
intvolume: '        28'
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1364/OE.403192
month: '10'
oa: 1
oa_version: Published Version
page: 33854-33868
pmid: 1
publication: Optics Express
publication_identifier:
  issn:
  - 1094-4087
publication_status: published
publisher: Optica Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fullwave Maxwell inverse design of axisymmetric, tunable, and multi-scale multi-wavelength
  metalenses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21640'
abstract:
- lang: eng
  text: "Conventional computing architectures have no known efficient algorithms for
    combinatorial optimization tasks such\r\nas the Ising problem, which requires
    finding the ground state spin configuration of an arbitrary Ising graph. Physical\r\nIsing
    machines have recently been developed as an alternative to conventional exact
    and heuristic solvers; however,\r\nthese machines typically suffer from decreased
    ground state convergence probability or universality for high edge-\r\ndensity
    graphs or arbitrary graph weights, respectively. We experimentally demonstrate
    a proof-of-principle integrated\r\nnanophotonic recurrent Ising sampler (INPRIS),
    using a hybrid scheme combining electronics and silicon-on-insulator\r\nphotonics,
    that is capable of converging to the ground state of various four-spin graphs
    with high probability. The\r\nINPRIS results indicate that noise may be used as
    a resource to speed up the ground state search and to explore larger\r\nregions
    of the phase space, thus allowing one to probe noise-dependent physical observables.
    Since the recurrent pho-\r\ntonic transformation that our machine imparts is a
    fixed function of the graph problem and therefore compatible with\r\noptoelectronic
    architectures that support GHz clock rates (such as passive or non-volatile photonic
    circuits that do not\r\nrequire reprogramming at each iteration), this work suggests
    the potential for future systems that could achieve orders-\r\nof-magnitude speedups
    in exploring the solution space of combinatorially hard problems. "
article_processing_charge: No
article_type: original
author:
- first_name: Mihika
  full_name: Prabhu, Mihika
  last_name: Prabhu
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Yichen
  full_name: Shen, Yichen
  last_name: Shen
- first_name: Nicholas
  full_name: Harris, Nicholas
  last_name: Harris
- first_name: Li
  full_name: Jing, Li
  last_name: Jing
- first_name: Jacques
  full_name: Carolan, Jacques
  last_name: Carolan
- first_name: Ryan
  full_name: Hamerly, Ryan
  last_name: Hamerly
- first_name: Tom
  full_name: Baehr-Jones, Tom
  last_name: Baehr-Jones
- first_name: Michael
  full_name: Hochberg, Michael
  last_name: Hochberg
- first_name: Vladimir
  full_name: Čeperić, Vladimir
  last_name: Čeperić
- first_name: John D.
  full_name: Joannopoulos, John D.
  last_name: Joannopoulos
- first_name: Dirk R.
  full_name: Englund, Dirk R.
  last_name: Englund
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
citation:
  ama: Prabhu M, Roques-Carmes C, Shen Y, et al. Accelerating recurrent Ising machines
    in photonic integrated circuits. <i>Optica</i>. 2020;7(5):551-558. doi:<a href="https://doi.org/10.1364/optica.386613">10.1364/optica.386613</a>
  apa: Prabhu, M., Roques-Carmes, C., Shen, Y., Harris, N., Jing, L., Carolan, J.,
    … Soljačić, M. (2020). Accelerating recurrent Ising machines in photonic integrated
    circuits. <i>Optica</i>. Optica Publishing Group. <a href="https://doi.org/10.1364/optica.386613">https://doi.org/10.1364/optica.386613</a>
  chicago: Prabhu, Mihika, Charles Roques-Carmes, Yichen Shen, Nicholas Harris, Li
    Jing, Jacques Carolan, Ryan Hamerly, et al. “Accelerating Recurrent Ising Machines
    in Photonic Integrated Circuits.” <i>Optica</i>. Optica Publishing Group, 2020.
    <a href="https://doi.org/10.1364/optica.386613">https://doi.org/10.1364/optica.386613</a>.
  ieee: M. Prabhu <i>et al.</i>, “Accelerating recurrent Ising machines in photonic
    integrated circuits,” <i>Optica</i>, vol. 7, no. 5. Optica Publishing Group, pp.
    551–558, 2020.
  ista: Prabhu M, Roques-Carmes C, Shen Y, Harris N, Jing L, Carolan J, Hamerly R,
    Baehr-Jones T, Hochberg M, Čeperić V, Joannopoulos JD, Englund DR, Soljačić M.
    2020. Accelerating recurrent Ising machines in photonic integrated circuits. Optica.
    7(5), 551–558.
  mla: Prabhu, Mihika, et al. “Accelerating Recurrent Ising Machines in Photonic Integrated
    Circuits.” <i>Optica</i>, vol. 7, no. 5, Optica Publishing Group, 2020, pp. 551–58,
    doi:<a href="https://doi.org/10.1364/optica.386613">10.1364/optica.386613</a>.
  short: M. Prabhu, C. Roques-Carmes, Y. Shen, N. Harris, L. Jing, J. Carolan, R.
    Hamerly, T. Baehr-Jones, M. Hochberg, V. Čeperić, J.D. Joannopoulos, D.R. Englund,
    M. Soljačić, Optica 7 (2020) 551–558.
date_created: 2026-03-30T12:22:48Z
date_published: 2020-05-18T00:00:00Z
date_updated: 2026-04-27T07:06:04Z
day: '18'
ddc:
- '530'
doi: 10.1364/optica.386613
extern: '1'
fulldoi: https://doi.org/10.1364/optica.386613
intvolume: '         7'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1364/OPTICA.386613
month: '05'
oa: 1
oa_version: Published Version
page: 551-558
publication: Optica
publication_identifier:
  eissn:
  - 2334-2536
publication_status: published
publisher: Optica Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: Accelerating recurrent Ising machines in photonic integrated circuits
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21642'
abstract:
- lang: eng
  text: 'By codesigning a metaoptical front end in conjunction with an image‐processing
    back end, we demonstrate noise sensitivity and compactness substantially superior
    to either an optics‐only or a computation‐only approach, illustrated by two examples:
    subwavelength imaging and reconstruction of the full polarization coherence matrices
    of multiple light sources. Our end‐to‐end inverse designs couple the solution
    of the full Maxwell equations—exploiting all aspects of wave physics arising in
    subwavelength scatterers—with inverse‐scattering algorithms in a single large‐scale
    optimization involving  degrees of freedom. The resulting structures scatter light
    in a way that is radically different from either a conventional lens or a random
    microstructure, and suppress the noise sensitivity of the inverse‐scattering computation
    by several orders of magnitude. Incorporating the full wave physics is especially
    crucial for detecting spectral and polarization information that is discarded
    by geometric optics and scalar diffraction theory.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Zin
  full_name: Lin, Zin
  last_name: Lin
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Raphaël
  full_name: Pestourie, Raphaël
  last_name: Pestourie
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
- first_name: Arka
  full_name: Majumdar, Arka
  last_name: Majumdar
- first_name: Steven G.
  full_name: Johnson, Steven G.
  last_name: Johnson
citation:
  ama: Lin Z, Roques-Carmes C, Pestourie R, Soljačić M, Majumdar A, Johnson SG. End‐to‐end
    nanophotonic inverse design for imaging and polarimetry. <i>Nanophotonics</i>.
    2020;10(3):1177-1187. doi:<a href="https://doi.org/10.1515/nanoph-2020-0579">10.1515/nanoph-2020-0579</a>
  apa: Lin, Z., Roques-Carmes, C., Pestourie, R., Soljačić, M., Majumdar, A., &#38;
    Johnson, S. G. (2020). End‐to‐end nanophotonic inverse design for imaging and
    polarimetry. <i>Nanophotonics</i>. Wiley. <a href="https://doi.org/10.1515/nanoph-2020-0579">https://doi.org/10.1515/nanoph-2020-0579</a>
  chicago: Lin, Zin, Charles Roques-Carmes, Raphaël Pestourie, Marin Soljačić, Arka
    Majumdar, and Steven G. Johnson. “End‐to‐end Nanophotonic Inverse Design for Imaging
    and Polarimetry.” <i>Nanophotonics</i>. Wiley, 2020. <a href="https://doi.org/10.1515/nanoph-2020-0579">https://doi.org/10.1515/nanoph-2020-0579</a>.
  ieee: Z. Lin, C. Roques-Carmes, R. Pestourie, M. Soljačić, A. Majumdar, and S. G.
    Johnson, “End‐to‐end nanophotonic inverse design for imaging and polarimetry,”
    <i>Nanophotonics</i>, vol. 10, no. 3. Wiley, pp. 1177–1187, 2020.
  ista: Lin Z, Roques-Carmes C, Pestourie R, Soljačić M, Majumdar A, Johnson SG. 2020.
    End‐to‐end nanophotonic inverse design for imaging and polarimetry. Nanophotonics.
    10(3), 1177–1187.
  mla: Lin, Zin, et al. “End‐to‐end Nanophotonic Inverse Design for Imaging and Polarimetry.”
    <i>Nanophotonics</i>, vol. 10, no. 3, Wiley, 2020, pp. 1177–87, doi:<a href="https://doi.org/10.1515/nanoph-2020-0579">10.1515/nanoph-2020-0579</a>.
  short: Z. Lin, C. Roques-Carmes, R. Pestourie, M. Soljačić, A. Majumdar, S.G. Johnson,
    Nanophotonics 10 (2020) 1177–1187.
date_created: 2026-03-30T12:22:48Z
date_published: 2020-12-23T00:00:00Z
date_updated: 2026-04-27T09:29:25Z
day: '23'
ddc:
- '530'
doi: 10.1515/nanoph-2020-0579
extern: '1'
external_id:
  arxiv:
  - '2006.09145'
fulldoi: https://doi.org/10.1515/nanoph-2020-0579
intvolume: '        10'
issue: '3'
keyword:
- computational imaging
- end-to-end photonic inverse design
- inverse scattering
- meta-optics
- polarimetry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1515/nanoph-2020-0579
month: '12'
oa: 1
oa_version: Published Version
page: 1177-1187
publication: Nanophotonics
publication_identifier:
  eissn:
  - 2192-8614
  issn:
  - 2192-8614
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: End‐to‐end nanophotonic inverse design for imaging and polarimetry
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 10
year: '2020'
...
---
_id: '13361'
abstract:
- lang: eng
  text: "In nature, light is harvested by photoactive proteins to drive a range of
    biological processes, including photosynthesis, phototaxis, vision, and ultimately
    life. Bacteriorhodopsin, for example, is a protein embedded within archaeal cell
    membranes that binds the chromophore retinal within its hydrophobic pocket. Exposure
    to light triggers regioselective photoisomerization of the confined retinal, which
    in turn initiates a cascade of conformational changes within the protein, triggering
    proton flux against the concentration gradient, providing the microorganisms with
    the energy to live. We are inspired by these functions in nature to harness light
    energy using synthetic photoswitches under confinement. Like retinal, synthetic
    photoswitches require some degree of conformational flexibility to isomerize.
    In nature, the conformational change associated with retinal isomerization is
    accommodated by the structural flexibility of the opsin host, yet it results in
    steric communication between the chromophore and the protein. Similarly, we strive
    to design systems wherein isomerization of confined photoswitches results in steric
    communication between a photoswitch and its confining environment. To achieve
    this aim, a balance must be struck between molecular crowding and conformational
    freedom under confinement: too much crowding prevents switching, whereas too much
    freedom resembles switching of isolated molecules in solution, preventing communication.\r\n\r\nIn
    this Account, we discuss five classes of synthetic light-switchable compounds—diarylethenes,
    anthracenes, azobenzenes, spiropyrans, and donor–acceptor Stenhouse adducts—comparing
    their behaviors under confinement and in solution. The environments employed to
    confine these photoswitches are diverse, ranging from planar surfaces to nanosized
    cavities within coordination cages, nanoporous frameworks, and nanoparticle aggregates.
    The trends that emerge are primarily dependent on the nature of the photoswitch
    and not on the material used for confinement. In general, we find that photoswitches
    requiring less conformational freedom for switching are, as expected, more straightforward
    to isomerize reversibly under confinement. Because these compounds undergo only
    small structural changes upon isomerization, however, switching does not propagate
    into communication with their environment. Conversely, photoswitches that require
    more conformational freedom are more challenging to switch under confinement but
    also can influence system-wide behavior.\r\n\r\nAlthough we are primarily interested
    in the effects of geometric constraints on photoswitching under confinement, additional
    effects inevitably emerge when a compound is removed from solution and placed
    within a new, more crowded environment. For instance, we have found that compounds
    that convert to zwitterionic isomers upon light irradiation often experience stabilization
    of these forms under confinement. This effect results from the mutual stabilization
    of zwitterions that are brought into close proximity on surfaces or within cavities.
    Furthermore, photoswitches can experience preorganization under confinement, influencing
    the selectivity and efficiency of their photoreactions. Because intermolecular
    interactions arising from confinement cannot be considered independently from
    the effects of geometric constraints, we describe all confinement effects concurrently
    throughout this Account."
article_processing_charge: No
article_type: original
author:
- first_name: Angela B.
  full_name: Grommet, Angela B.
  last_name: Grommet
- first_name: Lucia M.
  full_name: Lee, Lucia M.
  last_name: Lee
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Grommet AB, Lee LM, Klajn R. Molecular photoswitching in confined spaces. <i>Accounts
    of Chemical Research</i>. 2020;53(11):2600-2610. doi:<a href="https://doi.org/10.1021/acs.accounts.0c00434">10.1021/acs.accounts.0c00434</a>
  apa: Grommet, A. B., Lee, L. M., &#38; Klajn, R. (2020). Molecular photoswitching
    in confined spaces. <i>Accounts of Chemical Research</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.accounts.0c00434">https://doi.org/10.1021/acs.accounts.0c00434</a>
  chicago: Grommet, Angela B., Lucia M. Lee, and Rafal Klajn. “Molecular Photoswitching
    in Confined Spaces.” <i>Accounts of Chemical Research</i>. American Chemical Society,
    2020. <a href="https://doi.org/10.1021/acs.accounts.0c00434">https://doi.org/10.1021/acs.accounts.0c00434</a>.
  ieee: A. B. Grommet, L. M. Lee, and R. Klajn, “Molecular photoswitching in confined
    spaces,” <i>Accounts of Chemical Research</i>, vol. 53, no. 11. American Chemical
    Society, pp. 2600–2610, 2020.
  ista: Grommet AB, Lee LM, Klajn R. 2020. Molecular photoswitching in confined spaces.
    Accounts of Chemical Research. 53(11), 2600–2610.
  mla: Grommet, Angela B., et al. “Molecular Photoswitching in Confined Spaces.” <i>Accounts
    of Chemical Research</i>, vol. 53, no. 11, American Chemical Society, 2020, pp.
    2600–10, doi:<a href="https://doi.org/10.1021/acs.accounts.0c00434">10.1021/acs.accounts.0c00434</a>.
  short: A.B. Grommet, L.M. Lee, R. Klajn, Accounts of Chemical Research 53 (2020)
    2600–2610.
date_created: 2023-08-01T09:35:50Z
date_published: 2020-11-17T00:00:00Z
date_updated: 2024-10-14T12:12:31Z
day: '17'
doi: 10.1021/acs.accounts.0c00434
extern: '1'
external_id:
  pmid:
  - '32969638'
fulldoi: https://doi.org/10.1021/acs.accounts.0c00434
intvolume: '        53'
issue: '11'
keyword:
- General Medicine
- General Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1021/acs.accounts.0c00434
month: '11'
oa: 1
oa_version: Published Version
page: 2600-2610
pmid: 1
publication: Accounts of Chemical Research
publication_identifier:
  eissn:
  - 1520-4898
  issn:
  - 0001-4842
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Molecular photoswitching in confined spaces
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 53
year: '2020'
...
---
_id: '13362'
abstract:
- lang: eng
  text: Aggregation of organic molecules can drastically affect their physicochemical
    properties. For instance, the optical properties of BODIPY dyes are inherently
    related to the degree of aggregation and the mutual orientation of BODIPY units
    within these aggregates. Whereas the noncovalent aggregation of various BODIPY
    dyes has been studied in diverse media, the ill-defined nature of these aggregates
    has made it difficult to elucidate the structure–property relationships. Here,
    we studied the encapsulation of three structurally simple BODIPY derivatives within
    the hydrophobic cavity of a water-soluble, flexible PdII6L4 coordination cage.
    The cavity size allowed for the selective encapsulation of two dye molecules,
    irrespective of the substitution pattern on the BODIPY core. Working with a model,
    a pentamethyl-substituted derivative, we found that the mutual orientation of
    two BODIPY units in the cage’s cavity was remarkably similar to that in the crystalline
    state of the free dye, allowing us to isolate and characterize the smallest possible
    noncovalent H-type BODIPY aggregate, namely, an H-dimer. Interestingly, a CF3-substituted
    BODIPY, known for forming J-type aggregates, was also encapsulated as an H-dimer.
    Taking advantage of the dynamic nature of encapsulation, we developed a system
    in which reversible switching between H- and J-aggregates can be induced for multiple
    cycles simply by addition and subsequent destruction of the cage. We expect that
    the ability to rapidly and reversibly manipulate the optical properties of supramolecular
    inclusion complexes in aqueous media will open up avenues for developing detection
    systems that operate within biological environments.
article_processing_charge: No
article_type: original
author:
- first_name: Julius
  full_name: Gemen, Julius
  last_name: Gemen
- first_name: Johannes
  full_name: Ahrens, Johannes
  last_name: Ahrens
- first_name: Linda J. W.
  full_name: Shimon, Linda J. W.
  last_name: Shimon
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Gemen J, Ahrens J, Shimon LJW, Klajn R. Modulating the optical properties of
    BODIPY dyes by noncovalent dimerization within a flexible coordination cage. <i>Journal
    of the American Chemical Society</i>. 2020;142(41):17721-17729. doi:<a href="https://doi.org/10.1021/jacs.0c08589">10.1021/jacs.0c08589</a>
  apa: Gemen, J., Ahrens, J., Shimon, L. J. W., &#38; Klajn, R. (2020). Modulating
    the optical properties of BODIPY dyes by noncovalent dimerization within a flexible
    coordination cage. <i>Journal of the American Chemical Society</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/jacs.0c08589">https://doi.org/10.1021/jacs.0c08589</a>
  chicago: Gemen, Julius, Johannes Ahrens, Linda J. W. Shimon, and Rafal Klajn. “Modulating
    the Optical Properties of BODIPY Dyes by Noncovalent Dimerization within a Flexible
    Coordination Cage.” <i>Journal of the American Chemical Society</i>. American
    Chemical Society, 2020. <a href="https://doi.org/10.1021/jacs.0c08589">https://doi.org/10.1021/jacs.0c08589</a>.
  ieee: J. Gemen, J. Ahrens, L. J. W. Shimon, and R. Klajn, “Modulating the optical
    properties of BODIPY dyes by noncovalent dimerization within a flexible coordination
    cage,” <i>Journal of the American Chemical Society</i>, vol. 142, no. 41. American
    Chemical Society, pp. 17721–17729, 2020.
  ista: Gemen J, Ahrens J, Shimon LJW, Klajn R. 2020. Modulating the optical properties
    of BODIPY dyes by noncovalent dimerization within a flexible coordination cage.
    Journal of the American Chemical Society. 142(41), 17721–17729.
  mla: Gemen, Julius, et al. “Modulating the Optical Properties of BODIPY Dyes by
    Noncovalent Dimerization within a Flexible Coordination Cage.” <i>Journal of the
    American Chemical Society</i>, vol. 142, no. 41, American Chemical Society, 2020,
    pp. 17721–29, doi:<a href="https://doi.org/10.1021/jacs.0c08589">10.1021/jacs.0c08589</a>.
  short: J. Gemen, J. Ahrens, L.J.W. Shimon, R. Klajn, Journal of the American Chemical
    Society 142 (2020) 17721–17729.
date_created: 2023-08-01T09:36:10Z
date_published: 2020-10-04T00:00:00Z
date_updated: 2024-10-14T12:12:41Z
day: '04'
doi: 10.1021/jacs.0c08589
extern: '1'
external_id:
  pmid:
  - '33006898'
fulldoi: https://doi.org/10.1021/jacs.0c08589
intvolume: '       142'
issue: '41'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1021/jacs.0c08589
month: '10'
oa: 1
oa_version: Published Version
page: 17721-17729
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modulating the optical properties of BODIPY dyes by noncovalent dimerization
  within a flexible coordination cage
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 142
year: '2020'
...
---
_id: '13363'
abstract:
- lang: eng
  text: Temporal activation of biological processes by visible light and subsequent
    return to an inactive state in the absence of light is an essential characteristic
    of photoreceptor cells. Inspired by these phenomena, light-responsive materials
    are very attractive due to the high spatiotemporal control of light irradiation,
    with light being able to precisely orchestrate processes repeatedly over many
    cycles. Herein, it is reported that light-driven proton transfer triggered by
    a merocyanine-based photoacid can be used to modulate the permeability of pH-responsive
    polymersomes through cyclic, temporally controlled protonation and deprotonation
    of the polymersome membrane. The membranes can undergo repeated light-driven swelling–contraction
    cycles without losing functional effectiveness. When applied to enzyme loaded-nanoreactors,
    this membrane responsiveness is used for the reversible control of enzymatic reactions.
    This combination of the merocyanine-based photoacid and pH-switchable nanoreactors
    results in rapidly responding and versatile supramolecular systems successfully
    used to switch enzymatic reactions ON and OFF on demand.
article_number: '2002135'
article_processing_charge: No
article_type: original
author:
- first_name: Silvia
  full_name: Moreno, Silvia
  last_name: Moreno
- first_name: Priyanka
  full_name: Sharan, Priyanka
  last_name: Sharan
- first_name: Johanna
  full_name: Engelke, Johanna
  last_name: Engelke
- first_name: Hannes
  full_name: Gumz, Hannes
  last_name: Gumz
- first_name: Susanne
  full_name: Boye, Susanne
  last_name: Boye
- first_name: Ulrich
  full_name: Oertel, Ulrich
  last_name: Oertel
- first_name: Peng
  full_name: Wang, Peng
  last_name: Wang
- first_name: Susanta
  full_name: Banerjee, Susanta
  last_name: Banerjee
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Brigitte
  full_name: Voit, Brigitte
  last_name: Voit
- first_name: Albena
  full_name: Lederer, Albena
  last_name: Lederer
- first_name: Dietmar
  full_name: Appelhans, Dietmar
  last_name: Appelhans
citation:
  ama: Moreno S, Sharan P, Engelke J, et al. Light‐driven proton transfer for cyclic
    and temporal switching of enzymatic nanoreactors. <i>Small</i>. 2020;16(37). doi:<a
    href="https://doi.org/10.1002/smll.202002135">10.1002/smll.202002135</a>
  apa: Moreno, S., Sharan, P., Engelke, J., Gumz, H., Boye, S., Oertel, U., … Appelhans,
    D. (2020). Light‐driven proton transfer for cyclic and temporal switching of enzymatic
    nanoreactors. <i>Small</i>. Wiley. <a href="https://doi.org/10.1002/smll.202002135">https://doi.org/10.1002/smll.202002135</a>
  chicago: Moreno, Silvia, Priyanka Sharan, Johanna Engelke, Hannes Gumz, Susanne
    Boye, Ulrich Oertel, Peng Wang, et al. “Light‐driven Proton Transfer for Cyclic
    and Temporal Switching of Enzymatic Nanoreactors.” <i>Small</i>. Wiley, 2020.
    <a href="https://doi.org/10.1002/smll.202002135">https://doi.org/10.1002/smll.202002135</a>.
  ieee: S. Moreno <i>et al.</i>, “Light‐driven proton transfer for cyclic and temporal
    switching of enzymatic nanoreactors,” <i>Small</i>, vol. 16, no. 37. Wiley, 2020.
  ista: Moreno S, Sharan P, Engelke J, Gumz H, Boye S, Oertel U, Wang P, Banerjee
    S, Klajn R, Voit B, Lederer A, Appelhans D. 2020. Light‐driven proton transfer
    for cyclic and temporal switching of enzymatic nanoreactors. Small. 16(37), 2002135.
  mla: Moreno, Silvia, et al. “Light‐driven Proton Transfer for Cyclic and Temporal
    Switching of Enzymatic Nanoreactors.” <i>Small</i>, vol. 16, no. 37, 2002135,
    Wiley, 2020, doi:<a href="https://doi.org/10.1002/smll.202002135">10.1002/smll.202002135</a>.
  short: S. Moreno, P. Sharan, J. Engelke, H. Gumz, S. Boye, U. Oertel, P. Wang, S.
    Banerjee, R. Klajn, B. Voit, A. Lederer, D. Appelhans, Small 16 (2020).
date_created: 2023-08-01T09:36:48Z
date_published: 2020-08-11T00:00:00Z
date_updated: 2023-08-07T10:11:41Z
day: '11'
doi: 10.1002/smll.202002135
extern: '1'
external_id:
  pmid:
  - '32783385'
fulldoi: https://doi.org/10.1002/smll.202002135
intvolume: '        16'
issue: '37'
keyword:
- Biomaterials
- Biotechnology
- General Materials Science
- General Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/smll.202002135
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Small
publication_identifier:
  eissn:
  - 1613-6829
  issn:
  - 1613-6810
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Light‐driven proton transfer for cyclic and temporal switching of enzymatic
  nanoreactors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2020'
...
---
_id: '13364'
abstract:
- lang: eng
  text: Photochromic molecules undergo reversible isomerization upon irradiation with
    light at different wavelengths, a process that can alter their physical and chemical
    properties. For instance, dihydropyrene (DHP) is a deep-colored compound that
    isomerizes to light-brown cyclophanediene (CPD) upon irradiation with visible
    light. CPD can then isomerize back to DHP upon irradiation with UV light or thermally
    in the dark. Conversion between DHP and CPD is thought to proceed via a biradical
    intermediate; bimolecular events involving this unstable intermediate thus result
    in rapid decomposition and poor cycling performance. Here, we show that the reversible
    isomerization of DHP can be stabilized upon confinement within a PdII6L4 coordination
    cage. By protecting this reactive intermediate using the cage, each isomerization
    reaction proceeds to higher yield, which significantly decreases the fatigue experienced
    by the system upon repeated photocycling. Although molecular confinement is known
    to help stabilize reactive species, this effect is not typically employed to protect
    reactive intermediates and thus improve reaction yields. We envisage that performing
    reactions under confinement will not only improve the cyclic performance of photochromic
    molecules, but may also increase the amount of product obtainable from traditionally
    low-yielding organic reactions.
article_processing_charge: No
article_type: original
author:
- first_name: Martina
  full_name: Canton, Martina
  last_name: Canton
- first_name: Angela B.
  full_name: Grommet, Angela B.
  last_name: Grommet
- first_name: Luca
  full_name: Pesce, Luca
  last_name: Pesce
- first_name: Julius
  full_name: Gemen, Julius
  last_name: Gemen
- first_name: Shiming
  full_name: Li, Shiming
  last_name: Li
- first_name: Yael
  full_name: Diskin-Posner, Yael
  last_name: Diskin-Posner
- first_name: Alberto
  full_name: Credi, Alberto
  last_name: Credi
- first_name: Giovanni M.
  full_name: Pavan, Giovanni M.
  last_name: Pavan
- first_name: Joakim
  full_name: Andréasson, Joakim
  last_name: Andréasson
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Canton M, Grommet AB, Pesce L, et al. Improving fatigue resistance of dihydropyrene
    by encapsulation within a coordination cage. <i>Journal of the American Chemical
    Society</i>. 2020;142(34):14557-14565. doi:<a href="https://doi.org/10.1021/jacs.0c06146">10.1021/jacs.0c06146</a>
  apa: Canton, M., Grommet, A. B., Pesce, L., Gemen, J., Li, S., Diskin-Posner, Y.,
    … Klajn, R. (2020). Improving fatigue resistance of dihydropyrene by encapsulation
    within a coordination cage. <i>Journal of the American Chemical Society</i>. American
    Chemical Society. <a href="https://doi.org/10.1021/jacs.0c06146">https://doi.org/10.1021/jacs.0c06146</a>
  chicago: Canton, Martina, Angela B. Grommet, Luca Pesce, Julius Gemen, Shiming Li,
    Yael Diskin-Posner, Alberto Credi, Giovanni M. Pavan, Joakim Andréasson, and Rafal
    Klajn. “Improving Fatigue Resistance of Dihydropyrene by Encapsulation within
    a Coordination Cage.” <i>Journal of the American Chemical Society</i>. American
    Chemical Society, 2020. <a href="https://doi.org/10.1021/jacs.0c06146">https://doi.org/10.1021/jacs.0c06146</a>.
  ieee: M. Canton <i>et al.</i>, “Improving fatigue resistance of dihydropyrene by
    encapsulation within a coordination cage,” <i>Journal of the American Chemical
    Society</i>, vol. 142, no. 34. American Chemical Society, pp. 14557–14565, 2020.
  ista: Canton M, Grommet AB, Pesce L, Gemen J, Li S, Diskin-Posner Y, Credi A, Pavan
    GM, Andréasson J, Klajn R. 2020. Improving fatigue resistance of dihydropyrene
    by encapsulation within a coordination cage. Journal of the American Chemical
    Society. 142(34), 14557–14565.
  mla: Canton, Martina, et al. “Improving Fatigue Resistance of Dihydropyrene by Encapsulation
    within a Coordination Cage.” <i>Journal of the American Chemical Society</i>,
    vol. 142, no. 34, American Chemical Society, 2020, pp. 14557–65, doi:<a href="https://doi.org/10.1021/jacs.0c06146">10.1021/jacs.0c06146</a>.
  short: M. Canton, A.B. Grommet, L. Pesce, J. Gemen, S. Li, Y. Diskin-Posner, A.
    Credi, G.M. Pavan, J. Andréasson, R. Klajn, Journal of the American Chemical Society
    142 (2020) 14557–14565.
date_created: 2023-08-01T09:36:59Z
date_published: 2020-08-14T00:00:00Z
date_updated: 2023-08-07T10:15:38Z
day: '14'
doi: 10.1021/jacs.0c06146
extern: '1'
external_id:
  pmid:
  - '32791832'
fulldoi: https://doi.org/10.1021/jacs.0c06146
intvolume: '       142'
issue: '34'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1021/jacs.0c06146
month: '08'
oa: 1
oa_version: Published Version
page: 14557-14565
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Improving fatigue resistance of dihydropyrene by encapsulation within a coordination
  cage
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 142
year: '2020'
...
