---
OA_type: free access
_id: '54'
abstract:
- lang: eng
text: During epithelial tissue development, repair, and homeostasis, adherens junctions
(AJs) ensure intercellular adhesion and tissue integrity while allowing for cell
and tissue dynamics. Mechanical forces play critical roles in AJs’ composition
and dynamics. Recent findings highlight that beyond a well-established role in
reinforcing cell-cell adhesion, AJ mechanosensitivity promotes junctional remodeling
and polarization, thereby regulating critical processes such as cell intercalation,
division, and collective migration. Here, we provide an integrated view of mechanosensing
mechanisms that regulate cell-cell contact composition, geometry, and integrity
under tension and highlight pivotal roles for mechanosensitive AJ remodeling in
preserving epithelial integrity and sustaining tissue dynamics.
acknowledgement: Research in the Bellaïche laboratory is supported by the European
Research Council (ERC Advanced, TiMoprh, 340784), the Fondation ARC pour la Recherche
sur le Cancer (SL220130607097), the Agence Nationale de la Recherche (ANR lLabex
DEEP; 11-LBX-0044, ANR-10-IDEX-0001-02), the Centre National de la Recherche Scientifique,
the Institut National de la Santé et de la Recherche Médicale, and Institut Curie
and PSL Research University funding or grants.
article_processing_charge: No
article_type: review
author:
- first_name: Diana C
full_name: Nunes Pinheiro, Diana C
id: 2E839F16-F248-11E8-B48F-1D18A9856A87
last_name: Nunes Pinheiro
orcid: 0000-0003-4333-7503
- first_name: Yohanns
full_name: Bellaïche, Yohanns
last_name: Bellaïche
citation:
ama: Nunes Pinheiro DC, Bellaïche Y. Mechanical force-driven adherents junction
remodeling and epithelial dynamics. Developmental Cell. 2018;47(1):3-19.
doi:10.1016/j.devcel.2018.09.014
apa: Nunes Pinheiro, D. C., & Bellaïche, Y. (2018). Mechanical force-driven
adherents junction remodeling and epithelial dynamics. Developmental Cell.
Cell Press. https://doi.org/10.1016/j.devcel.2018.09.014
chicago: Nunes Pinheiro, Diana C, and Yohanns Bellaïche. “Mechanical Force-Driven
Adherents Junction Remodeling and Epithelial Dynamics.” Developmental Cell.
Cell Press, 2018. https://doi.org/10.1016/j.devcel.2018.09.014.
ieee: D. C. Nunes Pinheiro and Y. Bellaïche, “Mechanical force-driven adherents
junction remodeling and epithelial dynamics,” Developmental Cell, vol.
47, no. 1. Cell Press, pp. 3–19, 2018.
ista: Nunes Pinheiro DC, Bellaïche Y. 2018. Mechanical force-driven adherents junction
remodeling and epithelial dynamics. Developmental Cell. 47(1), 3–19.
mla: Nunes Pinheiro, Diana C., and Yohanns Bellaïche. “Mechanical Force-Driven Adherents
Junction Remodeling and Epithelial Dynamics.” Developmental Cell, vol.
47, no. 1, Cell Press, 2018, pp. 3–19, doi:10.1016/j.devcel.2018.09.014.
short: D.C. Nunes Pinheiro, Y. Bellaïche, Developmental Cell 47 (2018) 3–19.
date_created: 2018-12-11T11:44:23Z
date_published: 2018-10-08T00:00:00Z
date_updated: 2026-06-18T18:52:56Z
day: '08'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.1016/j.devcel.2018.09.014
external_id:
isi:
- '000446579900002'
intvolume: ' 47'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.devcel.2018.09.014
month: '10'
oa: 1
oa_version: Published Version
page: 3 - 19
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '8000'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanical force-driven adherents junction remodeling and epithelial dynamics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 47
year: '2018'
...
---
_id: '543'
abstract:
- lang: eng
text: A central goal in theoretical neuroscience is to predict the response properties
of sensory neurons from first principles. To this end, “efficient coding” posits
that sensory neurons encode maximal information about their inputs given internal
constraints. There exist, however, many variants of efficient coding (e.g., redundancy
reduction, different formulations of predictive coding, robust coding, sparse
coding, etc.), differing in their regimes of applicability, in the relevance of
signals to be encoded, and in the choice of constraints. It is unclear how these
types of efficient coding relate or what is expected when different coding objectives
are combined. Here we present a unified framework that encompasses previously
proposed efficient coding models and extends to unique regimes. We show that optimizing
neural responses to encode predictive information can lead them to either correlate
or decorrelate their inputs, depending on the stimulus statistics; in contrast,
at low noise, efficiently encoding the past always predicts decorrelation. Later,
we investigate coding of naturalistic movies and show that qualitatively different
types of visual motion tuning and levels of response sparsity are predicted, depending
on whether the objective is to recover the past or predict the future. Our approach
promises a way to explain the observed diversity of sensory neural responses,
as due to multiple functional goals and constraints fulfilled by different cell
types and/or circuits.
article_processing_charge: No
author:
- first_name: Matthew J
full_name: Chalk, Matthew J
id: 2BAAC544-F248-11E8-B48F-1D18A9856A87
last_name: Chalk
orcid: 0000-0001-7782-4436
- first_name: Olivier
full_name: Marre, Olivier
last_name: Marre
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
citation:
ama: Chalk MJ, Marre O, Tkačik G. Toward a unified theory of efficient, predictive,
and sparse coding. Proceedings of the National Academy of Sciences of the United
States of America. 2018;115(1):186-191. doi:10.1073/pnas.1711114115
apa: Chalk, M. J., Marre, O., & Tkačik, G. (2018). Toward a unified theory of
efficient, predictive, and sparse coding. Proceedings of the National Academy
of Sciences of the United States of America. National Academy of Sciences.
https://doi.org/10.1073/pnas.1711114115
chicago: Chalk, Matthew J, Olivier Marre, and Gašper Tkačik. “Toward a Unified Theory
of Efficient, Predictive, and Sparse Coding.” Proceedings of the National Academy
of Sciences of the United States of America. National Academy of Sciences,
2018. https://doi.org/10.1073/pnas.1711114115.
ieee: M. J. Chalk, O. Marre, and G. Tkačik, “Toward a unified theory of efficient,
predictive, and sparse coding,” Proceedings of the National Academy of Sciences
of the United States of America, vol. 115, no. 1. National Academy of Sciences,
pp. 186–191, 2018.
ista: Chalk MJ, Marre O, Tkačik G. 2018. Toward a unified theory of efficient, predictive,
and sparse coding. Proceedings of the National Academy of Sciences of the United
States of America. 115(1), 186–191.
mla: Chalk, Matthew J., et al. “Toward a Unified Theory of Efficient, Predictive,
and Sparse Coding.” Proceedings of the National Academy of Sciences of the
United States of America, vol. 115, no. 1, National Academy of Sciences, 2018,
pp. 186–91, doi:10.1073/pnas.1711114115.
short: M.J. Chalk, O. Marre, G. Tkačik, Proceedings of the National Academy of Sciences
of the United States of America 115 (2018) 186–191.
corr_author: '1'
date_created: 2018-12-11T11:47:04Z
date_published: 2018-01-02T00:00:00Z
date_updated: 2025-05-14T10:55:59Z
day: '02'
department:
- _id: GaTk
doi: 10.1073/pnas.1711114115
external_id:
isi:
- '000419128700049'
intvolume: ' 115'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: 'https://doi.org/10.1101/152660 '
month: '01'
oa: 1
oa_version: Submitted Version
page: 186 - 191
project:
- _id: 254D1A94-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 25651-N26
name: Sensitivity to higher-order statistics in natural scenes
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_status: published
publisher: National Academy of Sciences
publist_id: '7273'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Toward a unified theory of efficient, predictive, and sparse coding
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 115
year: '2018'
...
---
_id: '5457'
abstract:
- lang: eng
text: "We consider the problem of expected cost analysis over nondeterministic probabilistic
programs, which aims at automated methods for analyzing the resource-usage of
such programs. Previous approaches for this problem could only handle nonnegative
bounded costs. However, in many scenarios, such as queuing networks or analysis
of cryptocurrency protocols, both positive and negative costs are necessary and
the costs are unbounded as well.\r\n\r\nIn this work, we present a sound and efficient
approach to obtain polynomial bounds on the expected accumulated cost of nondeterministic
probabilistic programs. Our approach can handle (a) general positive and negative
costs with bounded updates in variables; and (b) nonnegative costs with general
updates to variables. We show that several natural examples which could not be
handled by previous approaches are captured in our framework.\r\n\r\nMoreover,
our approach leads to an efficient polynomial-time algorithm, while no previous
approach for cost analysis of probabilistic programs could guarantee polynomial
runtime. Finally, we show the effectiveness of our approach by presenting experimental
results on a variety of programs, motivated by real-world applications, for which
we efficiently synthesize tight resource-usage bounds."
alternative_title:
- IST Austria Technical Report
author:
- first_name: '1'
full_name: Anonymous, 1
last_name: Anonymous
- first_name: '2'
full_name: Anonymous, 2
last_name: Anonymous
- first_name: '3'
full_name: Anonymous, 3
last_name: Anonymous
- first_name: '4'
full_name: Anonymous, 4
last_name: Anonymous
- first_name: '5'
full_name: Anonymous, 5
last_name: Anonymous
- first_name: '6'
full_name: Anonymous, 6
last_name: Anonymous
citation:
ama: Anonymous 1, Anonymous 2, Anonymous 3, Anonymous 4, Anonymous 5, Anonymous
6. Cost Analysis of Nondeterministic Probabilistic Programs. IST Austria;
2018.
apa: Anonymous, 1, Anonymous, 2, Anonymous, 3, Anonymous, 4, Anonymous, 5, &
Anonymous, 6. (2018). Cost analysis of nondeterministic probabilistic programs.
IST Austria.
chicago: Anonymous, 1, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, and 6
Anonymous. Cost Analysis of Nondeterministic Probabilistic Programs. IST
Austria, 2018.
ieee: 1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, and 6 Anonymous,
Cost analysis of nondeterministic probabilistic programs. IST Austria,
2018.
ista: Anonymous 1, Anonymous 2, Anonymous 3, Anonymous 4, Anonymous 5, Anonymous
6. 2018. Cost analysis of nondeterministic probabilistic programs, IST Austria,
27p.
mla: Anonymous, 1, et al. Cost Analysis of Nondeterministic Probabilistic Programs.
IST Austria, 2018.
short: 1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, 6 Anonymous,
Cost Analysis of Nondeterministic Probabilistic Programs, IST Austria, 2018.
corr_author: '1'
date_created: 2018-12-12T11:39:26Z
date_published: 2018-11-11T00:00:00Z
date_updated: 2025-04-15T08:11:42Z
day: '11'
ddc:
- '000'
file:
- access_level: open_access
checksum: ba3adafd36fe200385ccda583063b9eb
content_type: application/pdf
creator: system
date_created: 2018-12-12T11:53:32Z
date_updated: 2020-07-14T12:47:00Z
file_id: '5493'
file_name: IST-2018-1066-v1+1_techreport.pdf
file_size: 4202966
relation: main_file
- access_level: closed
checksum: 6cf3a19164bb8e5048a9c8c84dfd9fa3
content_type: text/plain
creator: dernst
date_created: 2019-05-10T13:22:12Z
date_updated: 2020-07-14T12:47:00Z
file_id: '6402'
file_name: authors-names.txt
file_size: 322
relation: main_file
file_date_updated: 2020-07-14T12:47:00Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: '27'
publication_identifier:
issn:
- 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '1066'
related_material:
record:
- id: '6175'
relation: later_version
status: public
scopus_import: 1
status: public
title: Cost analysis of nondeterministic probabilistic programs
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '55'
abstract:
- lang: eng
text: Many animals use antimicrobials to prevent or cure disease [1,2]. For example,
some animals will ingest plants with medicinal properties, both prophylactically
to prevent infection and therapeutically to self-medicate when sick. Antimicrobial
substances are also used as topical disinfectants, to prevent infection, protect
offspring and to sanitise their surroundings [1,2]. Social insects (ants, bees,
wasps and termites) build nests in environments with a high abundance and diversity
of pathogenic microorganisms — such as soil and rotting wood — and colonies are
often densely crowded, creating conditions that favour disease outbreaks. Consequently,
social insects have evolved collective disease defences to protect their colonies
from epidemics. These traits can be seen as functionally analogous to the immune
system of individual organisms [3,4]. This ‘social immunity’ utilises antimicrobials
to prevent and eradicate infections, and to keep the brood and nest clean. However,
these antimicrobial compounds can be harmful to the insects themselves, and it
is unknown how colonies prevent collateral damage when using them. Here, we demonstrate
that antimicrobial acids, produced by workers to disinfect the colony, are harmful
to the delicate pupal brood stage, but that the pupae are protected from the acids
by the presence of a silk cocoon. Garden ants spray their nests with an antimicrobial
poison to sanitize contaminated nestmates and brood. Here, Pull et al show that
they also prophylactically sanitise their colonies, and that the silk cocoon serves
as a barrier to protect developing pupae, thus preventing collateral damage during
nest sanitation.
article_processing_charge: No
article_type: original
author:
- first_name: Christopher
full_name: Pull, Christopher
id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
last_name: Pull
orcid: 0000-0003-1122-3982
- first_name: Sina
full_name: Metzler, Sina
id: 48204546-F248-11E8-B48F-1D18A9856A87
last_name: Metzler
orcid: 0000-0002-9547-2494
- first_name: Elisabeth
full_name: Naderlinger, Elisabeth
id: 31757262-F248-11E8-B48F-1D18A9856A87
last_name: Naderlinger
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Pull C, Metzler S, Naderlinger E, Cremer S. Protection against the lethal side
effects of social immunity in ants. Current Biology. 2018;28(19):R1139-R1140.
doi:10.1016/j.cub.2018.08.063
apa: Pull, C., Metzler, S., Naderlinger, E., & Cremer, S. (2018). Protection
against the lethal side effects of social immunity in ants. Current Biology.
Cell Press. https://doi.org/10.1016/j.cub.2018.08.063
chicago: Pull, Christopher, Sina Metzler, Elisabeth Naderlinger, and Sylvia Cremer.
“Protection against the Lethal Side Effects of Social Immunity in Ants.” Current
Biology. Cell Press, 2018. https://doi.org/10.1016/j.cub.2018.08.063.
ieee: C. Pull, S. Metzler, E. Naderlinger, and S. Cremer, “Protection against the
lethal side effects of social immunity in ants,” Current Biology, vol.
28, no. 19. Cell Press, pp. R1139–R1140, 2018.
ista: Pull C, Metzler S, Naderlinger E, Cremer S. 2018. Protection against the lethal
side effects of social immunity in ants. Current Biology. 28(19), R1139–R1140.
mla: Pull, Christopher, et al. “Protection against the Lethal Side Effects of Social
Immunity in Ants.” Current Biology, vol. 28, no. 19, Cell Press, 2018,
pp. R1139–40, doi:10.1016/j.cub.2018.08.063.
short: C. Pull, S. Metzler, E. Naderlinger, S. Cremer, Current Biology 28 (2018)
R1139–R1140.
date_created: 2018-12-11T11:44:23Z
date_published: 2018-10-08T00:00:00Z
date_updated: 2026-06-18T18:53:43Z
day: '08'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1016/j.cub.2018.08.063
external_id:
isi:
- '000446693400008'
intvolume: ' 28'
isi: 1
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.cub.2018.08.063
month: '10'
oa: 1
oa_version: Published Version
page: R1139 - R1140
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '7999'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protection against the lethal side effects of social immunity in ants
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2018'
...
---
_id: '554'
abstract:
- lang: eng
text: We analyse the canonical Bogoliubov free energy functional in three dimensions
at low temperatures in the dilute limit. We prove existence of a first-order phase
transition and, in the limit (Formula presented.), we determine the critical temperature
to be (Formula presented.) to leading order. Here, (Formula presented.) is the
critical temperature of the free Bose gas, ρ is the density of the gas and a is
the scattering length of the pair-interaction potential V. We also prove asymptotic
expansions for the free energy. In particular, we recover the Lee–Huang–Yang formula
in the limit (Formula presented.).
article_processing_charge: No
arxiv: 1
author:
- first_name: Marcin M
full_name: Napiórkowski, Marcin M
id: 4197AD04-F248-11E8-B48F-1D18A9856A87
last_name: Napiórkowski
- first_name: Robin
full_name: Reuvers, Robin
last_name: Reuvers
- first_name: Jan
full_name: Solovej, Jan
last_name: Solovej
citation:
ama: 'Napiórkowski MM, Reuvers R, Solovej J. The Bogoliubov free energy functional
II: The dilute Limit. Communications in Mathematical Physics. 2018;360(1):347-403.
doi:10.1007/s00220-017-3064-x'
apa: 'Napiórkowski, M. M., Reuvers, R., & Solovej, J. (2018). The Bogoliubov
free energy functional II: The dilute Limit. Communications in Mathematical
Physics. Springer. https://doi.org/10.1007/s00220-017-3064-x'
chicago: 'Napiórkowski, Marcin M, Robin Reuvers, and Jan Solovej. “The Bogoliubov
Free Energy Functional II: The Dilute Limit.” Communications in Mathematical
Physics. Springer, 2018. https://doi.org/10.1007/s00220-017-3064-x.'
ieee: 'M. M. Napiórkowski, R. Reuvers, and J. Solovej, “The Bogoliubov free energy
functional II: The dilute Limit,” Communications in Mathematical Physics,
vol. 360, no. 1. Springer, pp. 347–403, 2018.'
ista: 'Napiórkowski MM, Reuvers R, Solovej J. 2018. The Bogoliubov free energy functional
II: The dilute Limit. Communications in Mathematical Physics. 360(1), 347–403.'
mla: 'Napiórkowski, Marcin M., et al. “The Bogoliubov Free Energy Functional II:
The Dilute Limit.” Communications in Mathematical Physics, vol. 360, no.
1, Springer, 2018, pp. 347–403, doi:10.1007/s00220-017-3064-x.'
short: M.M. Napiórkowski, R. Reuvers, J. Solovej, Communications in Mathematical
Physics 360 (2018) 347–403.
date_created: 2018-12-11T11:47:09Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2025-07-10T11:52:52Z
day: '01'
department:
- _id: RoSe
doi: 10.1007/s00220-017-3064-x
external_id:
arxiv:
- '1511.05953'
intvolume: ' 360'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1511.05953
month: '05'
oa: 1
oa_version: Submitted Version
page: 347-403
project:
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P27533_N27
name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
publication: Communications in Mathematical Physics
publication_identifier:
issn:
- 0010-3616
publication_status: published
publisher: Springer
publist_id: '7260'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The Bogoliubov free energy functional II: The dilute Limit'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 360
year: '2018'
...
---
_id: '555'
abstract:
- lang: eng
text: Conventional wisdom has it that proteins fold and assemble into definite structures,
and that this defines their function. Glycosaminoglycans (GAGs) are different.
In most cases the structures they form have a low degree of order, even when interacting
with proteins. Here, we discuss how physical features common to all GAGs — hydrophilicity,
charge, linearity and semi-flexibility — underpin the overall properties of GAG-rich
matrices. By integrating soft matter physics concepts (e.g. polymer brushes and
phase separation) with our molecular understanding of GAG–protein interactions,
we can better comprehend how GAG-rich matrices assemble, what their properties
are, and how they function. Taking perineuronal nets (PNNs) — a GAG-rich matrix
enveloping neurons — as a relevant example, we propose that microphase separation
determines the holey PNN anatomy that is pivotal to PNN functions.
acknowledgement: "This work was supported by the European Research Council [Starting
Grant 306435 ‘JELLY’; to RPR], the Spanish Ministry of Competitiveness and Innovation
[MAT2014-54867-R, to RPR], the EPSRC Centre for Doctoral Training in Tissue Engineering
and Regenerative Medicine — Innovation in Medical and Biological Engineering [EP/L014823/1,
to JCFK], the Royal Society [RG160410, to JCFK], Wings for Life [WFL-UK-008/15,
to JCFK] and the European Union, the Operational Programme Research, Development
and Education in the framework of the project ‘Centre of Reconstructive Neuroscience’
[CZ.02.1.01/0.0./0.0/15_003/0000419, to JCFK]. AJD would like to thank Arthritis
Research UK [16539, 19489] and the MRC [76445, G0900538] for funding his work on
GAG–protein interactions.\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Ralf
full_name: Richter, Ralf
last_name: Richter
- first_name: Natalia
full_name: Baranova, Natalia
id: 38661662-F248-11E8-B48F-1D18A9856A87
last_name: Baranova
orcid: 0000-0002-3086-9124
- first_name: Anthony
full_name: Day, Anthony
last_name: Day
- first_name: Jessica
full_name: Kwok, Jessica
last_name: Kwok
citation:
ama: 'Richter R, Baranova NS, Day A, Kwok J. Glycosaminoglycans in extracellular
matrix organisation: Are concepts from soft matter physics key to understanding
the formation of perineuronal nets? Current Opinion in Structural Biology.
2018;50:65-74. doi:10.1016/j.sbi.2017.12.002'
apa: 'Richter, R., Baranova, N. S., Day, A., & Kwok, J. (2018). Glycosaminoglycans
in extracellular matrix organisation: Are concepts from soft matter physics key
to understanding the formation of perineuronal nets? Current Opinion in Structural
Biology. Elsevier. https://doi.org/10.1016/j.sbi.2017.12.002'
chicago: 'Richter, Ralf, Natalia S. Baranova, Anthony Day, and Jessica Kwok. “Glycosaminoglycans
in Extracellular Matrix Organisation: Are Concepts from Soft Matter Physics Key
to Understanding the Formation of Perineuronal Nets?” Current Opinion in Structural
Biology. Elsevier, 2018. https://doi.org/10.1016/j.sbi.2017.12.002.'
ieee: 'R. Richter, N. S. Baranova, A. Day, and J. Kwok, “Glycosaminoglycans in extracellular
matrix organisation: Are concepts from soft matter physics key to understanding
the formation of perineuronal nets?,” Current Opinion in Structural Biology,
vol. 50. Elsevier, pp. 65–74, 2018.'
ista: 'Richter R, Baranova NS, Day A, Kwok J. 2018. Glycosaminoglycans in extracellular
matrix organisation: Are concepts from soft matter physics key to understanding
the formation of perineuronal nets? Current Opinion in Structural Biology. 50,
65–74.'
mla: 'Richter, Ralf, et al. “Glycosaminoglycans in Extracellular Matrix Organisation:
Are Concepts from Soft Matter Physics Key to Understanding the Formation of Perineuronal
Nets?” Current Opinion in Structural Biology, vol. 50, Elsevier, 2018,
pp. 65–74, doi:10.1016/j.sbi.2017.12.002.'
short: R. Richter, N.S. Baranova, A. Day, J. Kwok, Current Opinion in Structural
Biology 50 (2018) 65–74.
date_created: 2018-12-11T11:47:09Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-11T14:07:03Z
day: '01'
department:
- _id: MaLo
doi: 10.1016/j.sbi.2017.12.002
external_id:
isi:
- '000443661300011'
intvolume: ' 50'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://eprints.whiterose.ac.uk/125524/
month: '06'
oa: 1
oa_version: Submitted Version
page: 65 - 74
publication: Current Opinion in Structural Biology
publication_status: published
publisher: Elsevier
publist_id: '7259'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Glycosaminoglycans in extracellular matrix organisation: Are concepts from
soft matter physics key to understanding the formation of perineuronal nets?'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 50
year: '2018'
...
---
_id: '556'
abstract:
- lang: eng
text: 'We investigate the free boundary Schur process, a variant of the Schur process
introduced by Okounkov and Reshetikhin, where we allow the first and the last
partitions to be arbitrary (instead of empty in the original setting). The pfaffian
Schur process, previously studied by several authors, is recovered when just one
of the boundary partitions is left free. We compute the correlation functions
of the process in all generality via the free fermion formalism, which we extend
with the thorough treatment of “free boundary states.” For the case of one free
boundary, our approach yields a new proof that the process is pfaffian. For the
case of two free boundaries, we find that the process is not pfaffian, but a closely
related process is. We also study three different applications of the Schur process
with one free boundary: fluctuations of symmetrized last passage percolation models,
limit shapes and processes for symmetric plane partitions and for plane overpartitions.'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Dan
full_name: Betea, Dan
last_name: Betea
- first_name: Jeremie
full_name: Bouttier, Jeremie
last_name: Bouttier
- first_name: Peter
full_name: Nejjar, Peter
id: 4BF426E2-F248-11E8-B48F-1D18A9856A87
last_name: Nejjar
- first_name: Mirjana
full_name: Vuletic, Mirjana
last_name: Vuletic
citation:
ama: Betea D, Bouttier J, Nejjar P, Vuletic M. The free boundary Schur process and
applications I. Annales Henri Poincare. 2018;19(12):3663-3742. doi:10.1007/s00023-018-0723-1
apa: Betea, D., Bouttier, J., Nejjar, P., & Vuletic, M. (2018). The free boundary
Schur process and applications I. Annales Henri Poincare. Springer Nature.
https://doi.org/10.1007/s00023-018-0723-1
chicago: Betea, Dan, Jeremie Bouttier, Peter Nejjar, and Mirjana Vuletic. “The Free
Boundary Schur Process and Applications I.” Annales Henri Poincare. Springer
Nature, 2018. https://doi.org/10.1007/s00023-018-0723-1.
ieee: D. Betea, J. Bouttier, P. Nejjar, and M. Vuletic, “The free boundary Schur
process and applications I,” Annales Henri Poincare, vol. 19, no. 12. Springer
Nature, pp. 3663–3742, 2018.
ista: Betea D, Bouttier J, Nejjar P, Vuletic M. 2018. The free boundary Schur process
and applications I. Annales Henri Poincare. 19(12), 3663–3742.
mla: Betea, Dan, et al. “The Free Boundary Schur Process and Applications I.” Annales
Henri Poincare, vol. 19, no. 12, Springer Nature, 2018, pp. 3663–742, doi:10.1007/s00023-018-0723-1.
short: D. Betea, J. Bouttier, P. Nejjar, M. Vuletic, Annales Henri Poincare 19 (2018)
3663–3742.
date_created: 2018-12-11T11:47:09Z
date_published: 2018-11-13T00:00:00Z
date_updated: 2025-09-18T07:34:29Z
day: '13'
ddc:
- '500'
department:
- _id: LaEr
- _id: JaMa
doi: 10.1007/s00023-018-0723-1
ec_funded: 1
external_id:
arxiv:
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isi:
- '000450487900003'
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intvolume: ' 19'
isi: 1
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language:
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month: '11'
oa: 1
oa_version: Published Version
page: 3663-3742
project:
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call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
publication: Annales Henri Poincare
publication_identifier:
issn:
- 1424-0637
publication_status: published
publisher: Springer Nature
publist_id: '7258'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The free boundary Schur process and applications I
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type: journal_article
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volume: 19
year: '2018'
...
---
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abstract:
- lang: eng
text: "Nela Nikolic, Tobias Bergmiller, Alexandra Vandervelde, Tanino G. Albanese,
Lendert Gelens, and Isabella Moll (2018)\r\n“Autoregulation of mazEF expression
underlies growth heterogeneity in bacterial populations” Nucleic Acids Research,
doi: 10.15479/AT:ISTA:74;\r\nmicroscopy experiments by Tobias Bergmiller; image
and data analysis by Nela Nikolic."
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full_name: Bergmiller, Tobias
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last_name: Bergmiller
orcid: 0000-0001-5396-4346
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full_name: Nikolic, Nela
id: 42D9CABC-F248-11E8-B48F-1D18A9856A87
last_name: Nikolic
orcid: 0000-0001-9068-6090
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apa: Bergmiller, T., & Nikolic, N. (2018). Time-lapse microscopy data. Institute
of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:74
chicago: Bergmiller, Tobias, and Nela Nikolic. “Time-Lapse Microscopy Data.” Institute
of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:74.
ieee: T. Bergmiller and N. Nikolic, “Time-lapse microscopy data.” Institute of Science
and Technology Austria, 2018.
ista: Bergmiller T, Nikolic N. 2018. Time-lapse microscopy data, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:74.
mla: Bergmiller, Tobias, and Nela Nikolic. Time-Lapse Microscopy Data. Institute
of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:74.
short: T. Bergmiller, N. Nikolic, (2018).
datarep_id: '74'
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date_published: 2018-02-07T00:00:00Z
date_updated: 2026-04-16T12:20:36Z
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has_accepted_license: '1'
keyword:
- microscopy
- microfluidics
license: https://creativecommons.org/publicdomain/zero/1.0/
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
publist_id: '7385'
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status: public
title: Time-lapse microscopy data
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user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '5573'
abstract:
- lang: eng
text: Graph matching problems for large displacement optical flow of RGB-D images.
article_processing_charge: No
author:
- first_name: Hassan
full_name: Alhaija, Hassan
last_name: Alhaija
- first_name: Anita
full_name: Sellent, Anita
last_name: Sellent
- first_name: Daniel
full_name: Kondermann, Daniel
last_name: Kondermann
- first_name: Carsten
full_name: Rother, Carsten
last_name: Rother
citation:
ama: Alhaija H, Sellent A, Kondermann D, Rother C. Graph matching problems for GraphFlow
– 6D Large Displacement Scene Flow. 2018. doi:10.15479/AT:ISTA:82
apa: Alhaija, H., Sellent, A., Kondermann, D., & Rother, C. (2018). Graph matching
problems for GraphFlow – 6D Large Displacement Scene Flow. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:82
chicago: Alhaija, Hassan, Anita Sellent, Daniel Kondermann, and Carsten Rother.
“Graph Matching Problems for GraphFlow – 6D Large Displacement Scene Flow.” Institute
of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:82.
ieee: H. Alhaija, A. Sellent, D. Kondermann, and C. Rother, “Graph matching problems
for GraphFlow – 6D Large Displacement Scene Flow.” Institute of Science and Technology
Austria, 2018.
ista: Alhaija H, Sellent A, Kondermann D, Rother C. 2018. Graph matching problems
for GraphFlow – 6D Large Displacement Scene Flow, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:82.
mla: Alhaija, Hassan, et al. Graph Matching Problems for GraphFlow – 6D Large
Displacement Scene Flow. Institute of Science and Technology Austria, 2018,
doi:10.15479/AT:ISTA:82.
short: H. Alhaija, A. Sellent, D. Kondermann, C. Rother, (2018).
contributor:
- contributor_type: researcher
first_name: Paul
id: 446560C6-F248-11E8-B48F-1D18A9856A87
last_name: Swoboda
datarep_id: '82'
date_created: 2018-12-12T12:31:36Z
date_published: 2018-01-04T00:00:00Z
date_updated: 2024-02-21T13:41:17Z
day: '04'
ddc:
- '001'
department:
- _id: VlKo
doi: 10.15479/AT:ISTA:82
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date_updated: 2020-07-14T12:47:05Z
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file_size: 1737958
relation: main_file
file_date_updated: 2020-07-14T12:47:05Z
has_accepted_license: '1'
keyword:
- graph matching
- quadratic assignment problem<
month: '01'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
link:
- relation: research_paper
url: https://doi.org/10.1007/978-3-319-24947-6_23
status: public
title: Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow
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year: '2018'
...
---
_id: '5574'
abstract:
- lang: ger
text: 'Comparison of Scopus'' and publisher''s data on Austrian publication output
at IOP. '
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
citation:
ama: Villányi M. Data Check IOP Scopus vs. Publisher. 2018. doi:10.15479/AT:ISTA:86
apa: Villányi, M. (2018). Data Check IOP Scopus vs. Publisher. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:86
chicago: Villányi, Márton. “Data Check IOP Scopus vs. Publisher.” Institute of Science
and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:86.
ieee: M. Villányi, “Data Check IOP Scopus vs. Publisher.” Institute of Science and
Technology Austria, 2018.
ista: Villányi M. 2018. Data Check IOP Scopus vs. Publisher, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:86.
mla: Villányi, Márton. Data Check IOP Scopus vs. Publisher. Institute of
Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:86.
short: M. Villányi, (2018).
datarep_id: '86'
date_created: 2018-12-12T12:31:37Z
date_published: 2018-01-16T00:00:00Z
date_updated: 2026-06-18T18:35:06Z
day: '16'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.15479/AT:ISTA:86
file:
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checksum: c7a61147bd15cb4ae45878d270628c06
content_type: application/zip
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date_updated: 2020-07-14T12:47:05Z
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file_name: IST-2018-86-v1+1_Data_Check_IOP_Scopus_vs._Publisher.zip
file_size: 12283857
relation: main_file
file_date_updated: 2020-07-14T12:47:05Z
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keyword:
- Publication analysis
- Bibliography
- Open Access
month: '01'
oa: 1
oa_version: Submitted Version
publisher: Institute of Science and Technology Austria
related_material:
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status: public
title: Data Check IOP Scopus vs. Publisher
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year: '2018'
...
---
_id: '5575'
abstract:
- lang: ger
text: 'Comparison of Scopus'' and FWF''s data on Austrian publication output at
RSC. '
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
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ama: Villányi M. Data Check RSC Scopus vs. FWF. 2018. doi:10.15479/AT:ISTA:87
apa: Villányi, M. (2018). Data Check RSC Scopus vs. FWF. Institute of Science and
Technology Austria. https://doi.org/10.15479/AT:ISTA:87
chicago: Villányi, Márton. “Data Check RSC Scopus vs. FWF.” Institute of Science
and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:87.
ieee: M. Villányi, “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology
Austria, 2018.
ista: Villányi M. 2018. Data Check RSC Scopus vs. FWF, Institute of Science and
Technology Austria, 10.15479/AT:ISTA:87.
mla: Villányi, Márton. Data Check RSC Scopus vs. FWF. Institute of Science
and Technology Austria, 2018, doi:10.15479/AT:ISTA:87.
short: M. Villányi, (2018).
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date_published: 2018-01-16T00:00:00Z
date_updated: 2026-06-18T18:35:06Z
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- Publication analysis
- Bibliography
- Open Access
month: '01'
oa: 1
oa_version: Submitted Version
publisher: Institute of Science and Technology Austria
related_material:
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status: public
title: Data Check RSC Scopus vs. FWF
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year: '2018'
...
---
_id: '5576'
abstract:
- lang: ger
text: Comparison of Scopus' and FWF's data on Austrian publication output at T&F.
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
citation:
ama: Villányi M. Data Check T&F Scopus vs. FWF. 2018. doi:10.15479/AT:ISTA:88
apa: Villányi, M. (2018). Data Check T&F Scopus vs. FWF. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:88
chicago: Villányi, Márton. “Data Check T&F Scopus vs. FWF.” Institute of Science
and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:88.
ieee: M. Villányi, “Data Check T&F Scopus vs. FWF.” Institute of Science and
Technology Austria, 2018.
ista: Villányi M. 2018. Data Check T&F Scopus vs. FWF, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:88.
mla: Villányi, Márton. Data Check T&F Scopus vs. FWF. Institute of Science
and Technology Austria, 2018, doi:10.15479/AT:ISTA:88.
short: M. Villányi, (2018).
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date_published: 2018-01-16T00:00:00Z
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- Open Access
month: '01'
oa: 1
oa_version: Submitted Version
publisher: Institute of Science and Technology Austria
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...
---
_id: '5577'
abstract:
- lang: ger
text: Data on Austrian open access publication output at Emerald from 2013-2017
including data analysis.
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
citation:
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apa: Villányi, M. (2018). Emerald Austrian Publications 2013-2017. Institute of
Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:89
chicago: Villányi, Márton. “Emerald Austrian Publications 2013-2017.” Institute
of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:89.
ieee: M. Villányi, “Emerald Austrian Publications 2013-2017.” Institute of Science
and Technology Austria, 2018.
ista: Villányi M. 2018. Emerald Austrian Publications 2013-2017, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:89.
mla: Villányi, Márton. Emerald Austrian Publications 2013-2017. Institute
of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:89.
short: M. Villányi, (2018).
datarep_id: '89'
date_created: 2018-12-12T12:31:37Z
date_published: 2018-01-16T00:00:00Z
date_updated: 2026-06-18T18:35:06Z
day: '16'
ddc:
- '020'
department:
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doi: 10.15479/AT:ISTA:89
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date_updated: 2020-07-14T12:47:06Z
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keyword:
- Publication analysis
- Bibliography
- Open Access
month: '01'
oa: 1
oa_version: Submitted Version
publisher: Institute of Science and Technology Austria
related_material:
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relation: part_of_dissertation
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status: public
title: Emerald Austrian Publications 2013-2017
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year: '2018'
...
---
_id: '5578'
abstract:
- lang: ger
text: Data on Austrian open access publication output at IOP from 2012-2015 including
data analysis.
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
citation:
ama: Villányi M. IOP Austrian Publications 2012-2015. 2018. doi:10.15479/AT:ISTA:90
apa: Villányi, M. (2018). IOP Austrian Publications 2012-2015. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:90
chicago: Villányi, Márton. “IOP Austrian Publications 2012-2015.” Institute of Science
and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:90.
ieee: M. Villányi, “IOP Austrian Publications 2012-2015.” Institute of Science and
Technology Austria, 2018.
ista: Villányi M. 2018. IOP Austrian Publications 2012-2015, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:90.
mla: Villányi, Márton. IOP Austrian Publications 2012-2015. Institute of
Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:90.
short: M. Villányi, (2018).
datarep_id: '90'
date_created: 2018-12-12T12:31:38Z
date_published: 2018-01-16T00:00:00Z
date_updated: 2026-06-18T18:35:06Z
day: '16'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.15479/AT:ISTA:90
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file_size: 237067
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- Publication analysis
- Bibliography
- Open Access
month: '01'
oa: 1
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publisher: Institute of Science and Technology Austria
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...
---
_id: '5579'
abstract:
- lang: eng
text: Data on Austrian open access publication output at RSC from 2013-2017 including
data analysis.
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
citation:
ama: Villányi M. RSC Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:91
apa: Villányi, M. (2018). RSC Austrian Publications 2013-2017. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:91
chicago: Villányi, Márton. “RSC Austrian Publications 2013-2017.” Institute of Science
and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:91.
ieee: M. Villányi, “RSC Austrian Publications 2013-2017.” Institute of Science and
Technology Austria, 2018.
ista: Villányi M. 2018. RSC Austrian Publications 2013-2017, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:91.
mla: Villányi, Márton. RSC Austrian Publications 2013-2017. Institute of
Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:91.
short: M. Villányi, (2018).
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- Bibliography
- Open Access
month: '01'
oa: 1
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publisher: Institute of Science and Technology Austria
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...
---
_id: '5580'
abstract:
- lang: ger
text: Data on Austrian open access publication output at SAGE from 2013-2017 including
data analysis.
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
citation:
ama: Villányi M. SAGE Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:92
apa: Villányi, M. (2018). SAGE Austrian Publications 2013-2017. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:92
chicago: Villányi, Márton. “SAGE Austrian Publications 2013-2017.” Institute of
Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:92.
ieee: M. Villányi, “SAGE Austrian Publications 2013-2017.” Institute of Science
and Technology Austria, 2018.
ista: Villányi M. 2018. SAGE Austrian Publications 2013-2017, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:92.
mla: Villányi, Márton. SAGE Austrian Publications 2013-2017. Institute of
Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:92.
short: M. Villányi, (2018).
datarep_id: '92'
date_created: 2018-12-12T12:31:38Z
date_published: 2018-01-16T00:00:00Z
date_updated: 2026-06-18T18:35:06Z
day: '16'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.15479/AT:ISTA:92
file:
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checksum: 1ed83efc33aab2fc5dbe5ffe95de5c2b
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date_created: 2018-12-12T13:03:01Z
date_updated: 2020-07-14T12:47:06Z
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file_name: IST-2018-92-v1+1_SAGE_Austrian_Publications_2013-2017.zip
file_size: 724017
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file_date_updated: 2020-07-14T12:47:06Z
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keyword:
- Publication analysis
- Bibliography
- Open Access
month: '01'
oa: 1
oa_version: Submitted Version
publisher: Institute of Science and Technology Austria
related_material:
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status: public
status: public
title: SAGE Austrian Publications 2013-2017
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...
---
_id: '5581'
abstract:
- lang: ger
text: Data on Austrian open access publication output at Springer from 2013-2016
including data analysis.
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
citation:
ama: Villányi M. Springer Austrian Publications 2013-2016. 2018. doi:10.15479/AT:ISTA:93
apa: Villányi, M. (2018). Springer Austrian Publications 2013-2016. Institute of
Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:93
chicago: Villányi, Márton. “Springer Austrian Publications 2013-2016.” Institute
of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:93.
ieee: M. Villányi, “Springer Austrian Publications 2013-2016.” Institute of Science
and Technology Austria, 2018.
ista: Villányi M. 2018. Springer Austrian Publications 2013-2016, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:93.
mla: Villányi, Márton. Springer Austrian Publications 2013-2016. Institute
of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:93.
short: M. Villányi, (2018).
datarep_id: '93'
date_created: 2018-12-12T12:31:39Z
date_published: 2018-01-16T00:00:00Z
date_updated: 2026-06-18T18:35:06Z
day: '16'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.15479/AT:ISTA:93
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- Publication analysis
- Bibliography
- Open Access
month: '01'
oa: 1
oa_version: Submitted Version
publisher: Institute of Science and Technology Austria
related_material:
record:
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status: public
title: Springer Austrian Publications 2013-2016
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...
---
_id: '5582'
abstract:
- lang: eng
text: Data on Austrian open access publication output at Taylor&Francis from 2013-2017
including data analysis.
article_processing_charge: No
author:
- first_name: Márton
full_name: Villányi, Márton
id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
last_name: Villányi
orcid: 0000-0001-8126-0426
citation:
ama: Villányi M. Taylor&Francis Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:94
apa: Villányi, M. (2018). Taylor&Francis Austrian Publications 2013-2017. Institute
of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:94
chicago: Villányi, Márton. “Taylor&Francis Austrian Publications 2013-2017.”
Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:94.
ieee: M. Villányi, “Taylor&Francis Austrian Publications 2013-2017.” Institute
of Science and Technology Austria, 2018.
ista: Villányi M. 2018. Taylor&Francis Austrian Publications 2013-2017, Institute
of Science and Technology Austria, 10.15479/AT:ISTA:94.
mla: Villányi, Márton. Taylor&Francis Austrian Publications 2013-2017.
Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:94.
short: M. Villányi, (2018).
datarep_id: '94'
date_created: 2018-12-12T12:31:39Z
date_published: 2018-01-16T00:00:00Z
date_updated: 2026-06-18T18:35:06Z
day: '16'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.15479/AT:ISTA:94
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checksum: 3e000daf15d7eb9a47b234f3d20dd4b8
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date_updated: 2020-07-14T12:47:07Z
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file_name: IST-2018-94-v1+1_Taylor_Francis_Austrian_Publications_2013-2017.zip
file_size: 2552326
relation: main_file
file_date_updated: 2020-07-14T12:47:07Z
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keyword:
- Publication analysis
- Bibliography
- Open Access
month: '01'
oa: 1
oa_version: Submitted Version
publisher: Institute of Science and Technology Austria
related_material:
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status: public
status: public
title: Taylor&Francis Austrian Publications 2013-2017
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...
---
_id: '5583'
abstract:
- lang: eng
text: "Data and scripts are provided in support of the manuscript \"Efficient inference
of paternity and sibship inference given known maternity via hierarchical clustering\",
and the associated Python package FAPS, available from www.github.com/ellisztamas/faps.\r\n\r\nSimulation
scripts cover:\r\n1. Performance under different mating scenarios.\r\n2. Comparison
with Colony2.\r\n3. Effect of changing the number of Monte Carlo draws\r\n\r\nThe
final script covers the analysis of half-sib arrays from wild-pollinated seed
in an Antirrhinum majus hybrid zone."
article_processing_charge: No
author:
- first_name: Thomas
full_name: Ellis, Thomas
id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
last_name: Ellis
orcid: 0000-0002-8511-0254
citation:
ama: Ellis T. Data and Python scripts supporting Python package FAPS. 2018. doi:10.15479/AT:ISTA:95
apa: Ellis, T. (2018). Data and Python scripts supporting Python package FAPS. Institute
of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:95
chicago: Ellis, Thomas. “Data and Python Scripts Supporting Python Package FAPS.”
Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:95.
ieee: T. Ellis, “Data and Python scripts supporting Python package FAPS.” Institute
of Science and Technology Austria, 2018.
ista: Ellis T. 2018. Data and Python scripts supporting Python package FAPS, Institute
of Science and Technology Austria, 10.15479/AT:ISTA:95.
mla: Ellis, Thomas. Data and Python Scripts Supporting Python Package FAPS.
Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:95.
short: T. Ellis, (2018).
contributor:
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id: 419049E2-F248-11E8-B48F-1D18A9856A87
last_name: Field
- first_name: Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
datarep_id: '95'
date_created: 2018-12-12T12:31:39Z
date_published: 2018-02-12T00:00:00Z
date_updated: 2025-04-15T07:11:03Z
day: '12'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:95
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oa: 1
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publisher: Institute of Science and Technology Austria
related_material:
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...
---
_id: '5584'
abstract:
- lang: eng
text: "This package contains data for the publication \"Nonlinear decoding of a
complex movie from the mammalian retina\" by Deny S. et al, PLOS Comput Biol (2018).
\r\n\r\nThe data consists of\r\n(i) 91 spike sorted, isolated rat retinal ganglion
cells that pass stability and quality criteria, recorded on the multi-electrode
array, in response to the presentation of the complex movie with many randomly
moving dark discs. The responses are represented as 648000 x 91 binary matrix,
where the first index indicates the timebin of duration 12.5 ms, and the second
index the neural identity. The matrix entry is 0/1 if the neuron didn't/did spike
in the particular time bin.\r\n(ii) README file and a graphical illustration of
the structure of the experiment, specifying how the 648000 timebins are split
into epochs where 1, 2, 4, or 10 discs were displayed, and which stimulus segments
are exact repeats or unique ball trajectories.\r\n(iii) a 648000 x 400 matrix
of luminance traces for each of the 20 x 20 positions (\"sites\") in the movie
frame, with time that is locked to the recorded raster. The luminance traces are
produced as described in the manuscript by filtering the raw disc movie with a
small gaussian spatial kernel. "
article_processing_charge: No
author:
- first_name: Stephane
full_name: Deny, Stephane
last_name: Deny
- first_name: Olivier
full_name: Marre, Olivier
last_name: Marre
- first_name: Vicente
full_name: Botella-Soler, Vicente
last_name: Botella-Soler
- first_name: Georg S
full_name: Martius, Georg S
id: 3A276B68-F248-11E8-B48F-1D18A9856A87
last_name: Martius
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
citation:
ama: Deny S, Marre O, Botella-Soler V, Martius GS, Tkačik G. Nonlinear decoding
of a complex movie from the mammalian retina. 2018. doi:10.15479/AT:ISTA:98
apa: Deny, S., Marre, O., Botella-Soler, V., Martius, G. S., & Tkačik, G. (2018).
Nonlinear decoding of a complex movie from the mammalian retina. Institute of
Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:98
chicago: Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius,
and Gašper Tkačik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”
Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:98.
ieee: S. Deny, O. Marre, V. Botella-Soler, G. S. Martius, and G. Tkačik, “Nonlinear
decoding of a complex movie from the mammalian retina.” Institute of Science and
Technology Austria, 2018.
ista: Deny S, Marre O, Botella-Soler V, Martius GS, Tkačik G. 2018. Nonlinear decoding
of a complex movie from the mammalian retina, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:98.
mla: Deny, Stephane, et al. Nonlinear Decoding of a Complex Movie from the Mammalian
Retina. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:98.
short: S. Deny, O. Marre, V. Botella-Soler, G.S. Martius, G. Tkačik, (2018).
datarep_id: '98'
date_created: 2018-12-12T12:31:39Z
date_published: 2018-03-29T00:00:00Z
date_updated: 2025-04-15T08:18:24Z
day: '29'
ddc:
- '570'
department:
- _id: ChLa
- _id: GaTk
doi: 10.15479/AT:ISTA:98
file:
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creator: system
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date_updated: 2020-07-14T12:47:07Z
file_id: '5591'
file_name: IST-2018-98-v1+2_ExperimentStructure.pdf
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creator: system
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date_updated: 2020-07-14T12:47:07Z
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date_updated: 2020-07-14T12:47:07Z
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file_name: IST-2018-98-v1+4_README.txt
file_size: 986
relation: main_file
file_date_updated: 2020-07-14T12:47:07Z
has_accepted_license: '1'
keyword:
- retina
- decoding
- regression
- neural networks
- complex stimulus
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 254D1A94-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 25651-N26
name: Sensitivity to higher-order statistics in natural scenes
publisher: Institute of Science and Technology Austria
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...