---
_id: '13478'
abstract:
- lang: eng
text: HR 8799 is a star accompanied by four massive planets on wide orbits. The
observed planetary configuration has been shown to be unstable on a timescale
much shorter than the estimated age of the system (~30 Myr) unless the planets
are locked into mean motion resonances. This condition is characterised by small-amplitude
libration of one or more resonant angles that stabilise the system by preventing
close encounters. We simulate planetary systems similar to the HR 8799 planetary
system, exploring the parameter space in separation between the orbits, planetary
masses and distance from the Sun to the star. We find systems that look like HR
8799 and remain stable for longer than the estimated age of HR 8799. None of our
systems are forced into resonances. We find, with nominal masses (Mb = 5 MJup
and Mc,d,e = 7 MJup) and in a narrow range of orbit separations, that 5 of 100
systems match the observations and lifetime. Considering a broad range of orbit
separations, we find 12 of 900 similar systems. The systems survive significantly
longer because of their slightly increased initial orbit separations compared
to assuming circular orbits from the observed positions. A small increase in separation
leads to a significant increase in survival time. The low eccentricity the orbits
develop from gravitational interaction is enough for the planets to match the
observations. With lower masses, but still comfortably within the estimated planet
mass uncertainty, we find 18 of 100 matching and long-lived systems in a narrow
orbital separation range. In the broad separation range, we find 82 of 900 matching
systems. Our results imply that the planets in the HR 8799 system do not have
to be in strong mean motion resonances. We also investigate the future of wide-orbit
planetary systems using our HR 8799 analogues. We find that 80% of the systems
have two planets left after strong planet-planet scattering and these are on eccentric
orbits with semi-major axes of a1 ~ 10 AU and a2 ~ 30−1000 AU. We speculate that
other wide-orbit planetary systems, such as AB Pic and HD 106906, are the remnants
of HR 8799 analogues that underwent close encounters and dynamical instability.
article_number: A147
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ylva Louise Linsdotter
full_name: Götberg, Ylva Louise Linsdotter
id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
last_name: Götberg
orcid: 0000-0002-6960-6911
- first_name: Melvyn B.
full_name: Davies, Melvyn B.
last_name: Davies
- first_name: Alexander J.
full_name: Mustill, Alexander J.
last_name: Mustill
- first_name: Anders
full_name: Johansen, Anders
last_name: Johansen
- first_name: Ross P.
full_name: Church, Ross P.
last_name: Church
citation:
ama: Götberg YLL, Davies MB, Mustill AJ, Johansen A, Church RP. Long-term stability
of the HR 8799 planetary system without resonant lock. Astronomy & Astrophysics.
2016;592. doi:10.1051/0004-6361/201526309
apa: Götberg, Y. L. L., Davies, M. B., Mustill, A. J., Johansen, A., & Church,
R. P. (2016). Long-term stability of the HR 8799 planetary system without resonant
lock. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/201526309
chicago: Götberg, Ylva Louise Linsdotter, Melvyn B. Davies, Alexander J. Mustill,
Anders Johansen, and Ross P. Church. “Long-Term Stability of the HR 8799 Planetary
System without Resonant Lock.” Astronomy & Astrophysics. EDP Sciences,
2016. https://doi.org/10.1051/0004-6361/201526309.
ieee: Y. L. L. Götberg, M. B. Davies, A. J. Mustill, A. Johansen, and R. P. Church,
“Long-term stability of the HR 8799 planetary system without resonant lock,” Astronomy
& Astrophysics, vol. 592. EDP Sciences, 2016.
ista: Götberg YLL, Davies MB, Mustill AJ, Johansen A, Church RP. 2016. Long-term
stability of the HR 8799 planetary system without resonant lock. Astronomy &
Astrophysics. 592, A147.
mla: Götberg, Ylva Louise Linsdotter, et al. “Long-Term Stability of the HR 8799
Planetary System without Resonant Lock.” Astronomy & Astrophysics,
vol. 592, A147, EDP Sciences, 2016, doi:10.1051/0004-6361/201526309.
short: Y.L.L. Götberg, M.B. Davies, A.J. Mustill, A. Johansen, R.P. Church, Astronomy
& Astrophysics 592 (2016).
date_created: 2023-08-03T10:15:28Z
date_published: 2016-08-18T00:00:00Z
date_updated: 2024-10-14T12:22:01Z
day: '18'
doi: 10.1051/0004-6361/201526309
extern: '1'
external_id:
arxiv:
- '1606.07819'
fulldoi: https://doi.org/10.1051/0004-6361/201526309
intvolume: ' 592'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1051/0004-6361/201526309
month: '08'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
eissn:
- 1432-0746
issn:
- 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Long-term stability of the HR 8799 planetary system without resonant lock
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 592
year: '2016'
...
---
_id: '1348'
abstract:
- lang: eng
text: 'A drawing in the plane (ℝ2) of a graph G = (V,E) equipped with a function
γ : V → ℕ is x-bounded if (i) x(u) < x(v) whenever γ(u) < γ(v) and (ii)
γ(u) ≤ γ(w) ≤ γ(v), where uv ∈ E and γ(u) ≤ γ(v), whenever x(w) ∈ x(uv), where
x(.) denotes the projection to the xaxis.We prove a characterization of isotopy
classes of embeddings of connected graphs equipped with γ in the plane containing
an x-bounded embedding.Then we present an efficient algorithm, which relies on
our result, for testing the existence of an x-bounded embedding if the given graph
is a forest.This partially answers a question raised recently by Angelini et al.and
Chang et al., and proves that c-planarity testing of flat clustered graphs with
three clusters is tractable when the underlying abstract graph is a forest.'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Radoslav
full_name: Fulek, Radoslav
id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
last_name: Fulek
orcid: 0000-0001-8485-1774
citation:
ama: 'Fulek R. Bounded embeddings of graphs in the plane. In: Vol 9843. Springer;
2016:31-42. doi:10.1007/978-3-319-44543-4_3'
apa: 'Fulek, R. (2016). Bounded embeddings of graphs in the plane (Vol. 9843, pp.
31–42). Presented at the IWOCA: International Workshop on Combinatorial Algorithms,
Helsinki, Finland: Springer. https://doi.org/10.1007/978-3-319-44543-4_3'
chicago: Fulek, Radoslav. “Bounded Embeddings of Graphs in the Plane,” 9843:31–42.
Springer, 2016. https://doi.org/10.1007/978-3-319-44543-4_3.
ieee: 'R. Fulek, “Bounded embeddings of graphs in the plane,” presented at the IWOCA:
International Workshop on Combinatorial Algorithms, Helsinki, Finland, 2016, vol.
9843, pp. 31–42.'
ista: 'Fulek R. 2016. Bounded embeddings of graphs in the plane. IWOCA: International
Workshop on Combinatorial Algorithms, LNCS, vol. 9843, 31–42.'
mla: Fulek, Radoslav. Bounded Embeddings of Graphs in the Plane. Vol. 9843,
Springer, 2016, pp. 31–42, doi:10.1007/978-3-319-44543-4_3.
short: R. Fulek, in:, Springer, 2016, pp. 31–42.
conference:
end_date: 2018-08-19
location: Helsinki, Finland
name: 'IWOCA: International Workshop on Combinatorial Algorithms'
start_date: 2016-08-17
corr_author: '1'
date_created: 2018-12-11T11:51:31Z
date_published: 2016-08-09T00:00:00Z
date_updated: 2025-09-22T08:13:53Z
day: '09'
department:
- _id: UlWa
doi: 10.1007/978-3-319-44543-4_3
ec_funded: 1
external_id:
arxiv:
- '1610.07144'
isi:
- '000389333200003'
fulldoi: https://doi.org/10.1007/978-3-319-44543-4_3
intvolume: ' 9843'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1610.07144
month: '08'
oa: 1
oa_version: Preprint
page: 31 - 42
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Springer
publist_id: '5901'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bounded embeddings of graphs in the plane
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9843
year: '2016'
...
---
_id: '1349'
abstract:
- lang: eng
text: Crossing fitness valleys is one of the major obstacles to function optimization.
In this paper we investigate how the structure of the fitness valley, namely its
depth d and length ℓ, influence the runtime of different strategies for crossing
these valleys. We present a runtime comparison between the (1+1) EA and two non-elitist
nature-inspired algorithms, Strong Selection Weak Mutation (SSWM) and the Metropolis
algorithm. While the (1+1) EA has to jump across the valley to a point of higher
fitness because it does not accept decreasing moves, the non-elitist algorithms
may cross the valley by accepting worsening moves. We show that while the runtime
of the (1+1) EA algorithm depends critically on the length of the valley, the
runtimes of the non-elitist algorithms depend crucially only on the depth of the
valley. In particular, the expected runtime of both SSWM and Metropolis is polynomial
in ℓ and exponential in d while the (1+1) EA is efficient only for valleys of
small length. Moreover, we show that both SSWM and Metropolis can also efficiently
optimize a rugged function consisting of consecutive valleys.
article_processing_charge: No
author:
- first_name: Pietro
full_name: Oliveto, Pietro
last_name: Oliveto
- first_name: Tiago
full_name: Paixao, Tiago
id: 2C5658E6-F248-11E8-B48F-1D18A9856A87
last_name: Paixao
orcid: 0000-0003-2361-3953
- first_name: Jorge
full_name: Heredia, Jorge
last_name: Heredia
- first_name: Dirk
full_name: Sudholt, Dirk
last_name: Sudholt
- first_name: Barbora
full_name: Trubenova, Barbora
id: 42302D54-F248-11E8-B48F-1D18A9856A87
last_name: Trubenova
orcid: 0000-0002-6873-2967
citation:
ama: 'Oliveto P, Paixao T, Heredia J, Sudholt D, Trubenova B. When non-elitism outperforms
elitism for crossing fitness valleys. In: Proceedings of the Genetic and Evolutionary
Computation Conference 2016 . ACM; 2016:1163-1170. doi:10.1145/2908812.2908909'
apa: 'Oliveto, P., Paixao, T., Heredia, J., Sudholt, D., & Trubenova, B. (2016).
When non-elitism outperforms elitism for crossing fitness valleys. In Proceedings
of the Genetic and Evolutionary Computation Conference 2016 (pp. 1163–1170).
Denver, CO, USA: ACM. https://doi.org/10.1145/2908812.2908909'
chicago: Oliveto, Pietro, Tiago Paixao, Jorge Heredia, Dirk Sudholt, and Barbora
Trubenova. “When Non-Elitism Outperforms Elitism for Crossing Fitness Valleys.”
In Proceedings of the Genetic and Evolutionary Computation Conference 2016
, 1163–70. ACM, 2016. https://doi.org/10.1145/2908812.2908909.
ieee: P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, and B. Trubenova, “When non-elitism
outperforms elitism for crossing fitness valleys,” in Proceedings of the Genetic
and Evolutionary Computation Conference 2016 , Denver, CO, USA, 2016, pp.
1163–1170.
ista: 'Oliveto P, Paixao T, Heredia J, Sudholt D, Trubenova B. 2016. When non-elitism
outperforms elitism for crossing fitness valleys. Proceedings of the Genetic and
Evolutionary Computation Conference 2016 . GECCO: Genetic and evolutionary computation
conference, 1163–1170.'
mla: Oliveto, Pietro, et al. “When Non-Elitism Outperforms Elitism for Crossing
Fitness Valleys.” Proceedings of the Genetic and Evolutionary Computation Conference
2016 , ACM, 2016, pp. 1163–70, doi:10.1145/2908812.2908909.
short: P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, B. Trubenova, in:, Proceedings
of the Genetic and Evolutionary Computation Conference 2016 , ACM, 2016, pp. 1163–1170.
conference:
end_date: 2016-07-24
location: Denver, CO, USA
name: 'GECCO: Genetic and evolutionary computation conference'
start_date: 2016-07-20
date_created: 2018-12-11T11:51:31Z
date_published: 2016-07-20T00:00:00Z
date_updated: 2025-09-22T08:13:19Z
day: '20'
ddc:
- '576'
department:
- _id: NiBa
- _id: CaGu
doi: 10.1145/2908812.2908909
ec_funded: 1
external_id:
isi:
- '000382659200147'
file:
- access_level: open_access
checksum: a1896e39e4113f2711e46b435d5f3e69
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:27Z
date_updated: 2020-07-14T12:44:45Z
file_id: '5214'
file_name: IST-2016-650-v1+1_p1163-oliveto.pdf
file_size: 979026
relation: main_file
file_date_updated: 2020-07-14T12:44:45Z
fulldoi: https://doi.org/10.1145/2908812.2908909
has_accepted_license: '1'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: 1163 - 1170
project:
- _id: 25B1EC9E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '618091'
name: Speed of Adaptation in Population Genetics and Evolutionary Computation
publication: 'Proceedings of the Genetic and Evolutionary Computation Conference 2016 '
publication_status: published
publisher: ACM
publist_id: '5900'
pubrep_id: '650'
quality_controlled: '1'
scopus_import: '1'
status: public
title: When non-elitism outperforms elitism for crossing fitness valleys
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2016'
...
---
_id: '1350'
abstract:
- lang: eng
text: "The hippocampal CA3 region plays a key role in learning and memory. Recurrent
CA3–CA3\r\nsynapses are thought to be the subcellular substrate of pattern completion.
However, the\r\nsynaptic mechanisms of this network computation remain enigmatic.
To investigate these mechanisms, we combined functional connectivity analysis
with network modeling.\r\nSimultaneous recording fromup to eight CA3 pyramidal
neurons revealed that connectivity was sparse, spatially uniform, and highly enriched
in disynaptic motifs (reciprocal, convergence,divergence, and chain motifs). Unitary
connections were composed of one or two synaptic contacts, suggesting efficient
use of postsynaptic space. Real-size modeling indicated that CA3 networks with
sparse connectivity, disynaptic motifs, and single-contact connections robustly
generated pattern completion.Thus, macro- and microconnectivity contribute to
efficient\r\nmemory storage and retrieval in hippocampal networks."
acknowledged_ssus:
- _id: ScienComp
article_processing_charge: No
author:
- first_name: José
full_name: Guzmán, José
id: 30CC5506-F248-11E8-B48F-1D18A9856A87
last_name: Guzmán
orcid: 0000-0003-2209-5242
- first_name: Alois
full_name: Schlögl, Alois
id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
last_name: Schlögl
orcid: 0000-0002-5621-8100
- first_name: Michael
full_name: Frotscher, Michael
last_name: Frotscher
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Guzmán J, Schlögl A, Frotscher M, Jonas PM. Synaptic mechanisms of pattern
completion in the hippocampal CA3 network. Science. 2016;353(6304):1117-1123.
doi:10.1126/science.aaf1836
apa: Guzmán, J., Schlögl, A., Frotscher, M., & Jonas, P. M. (2016). Synaptic
mechanisms of pattern completion in the hippocampal CA3 network. Science.
American Association for the Advancement of Science. https://doi.org/10.1126/science.aaf1836
chicago: Guzmán, José, Alois Schlögl, Michael Frotscher, and Peter M Jonas. “Synaptic
Mechanisms of Pattern Completion in the Hippocampal CA3 Network.” Science.
American Association for the Advancement of Science, 2016. https://doi.org/10.1126/science.aaf1836.
ieee: J. Guzmán, A. Schlögl, M. Frotscher, and P. M. Jonas, “Synaptic mechanisms
of pattern completion in the hippocampal CA3 network,” Science, vol. 353,
no. 6304. American Association for the Advancement of Science, pp. 1117–1123,
2016.
ista: Guzmán J, Schlögl A, Frotscher M, Jonas PM. 2016. Synaptic mechanisms of pattern
completion in the hippocampal CA3 network. Science. 353(6304), 1117–1123.
mla: Guzmán, José, et al. “Synaptic Mechanisms of Pattern Completion in the Hippocampal
CA3 Network.” Science, vol. 353, no. 6304, American Association for the
Advancement of Science, 2016, pp. 1117–23, doi:10.1126/science.aaf1836.
short: J. Guzmán, A. Schlögl, M. Frotscher, P.M. Jonas, Science 353 (2016) 1117–1123.
corr_author: '1'
date_created: 2018-12-11T11:51:31Z
date_published: 2016-09-09T00:00:00Z
date_updated: 2025-09-22T08:12:10Z
day: '09'
ddc:
- '570'
department:
- _id: ScienComp
- _id: PeJo
doi: 10.1126/science.aaf1836
ec_funded: 1
external_id:
isi:
- '000382626800045'
file:
- access_level: open_access
checksum: 89caefa4e181424cbf0aecc835fcc5ec
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:12:27Z
date_updated: 2020-07-14T12:44:46Z
file_id: '4945'
file_name: IST-2017-823-v1+1_aaf1836_CombinedPDF_v2-1.pdf
file_size: 19408143
relation: main_file
file_date_updated: 2020-07-14T12:44:46Z
fulldoi: https://doi.org/10.1126/science.aaf1836
has_accepted_license: '1'
intvolume: ' 353'
isi: 1
issue: '6304'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Preprint
page: 1117 - 1123
project:
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '268548'
name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
- _id: 25C26B1E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P24909-B24
name: Mechanisms of transmitter release at GABAergic synapses
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '5899'
pubrep_id: '823'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synaptic mechanisms of pattern completion in the hippocampal CA3 network
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 353
year: '2016'
...
---
_id: '1353'
abstract:
- lang: eng
text: We characterize absorption in finite idempotent algebras by means of Jónsson
absorption and cube term blockers. As an application we show that it is decidable
whether a given subset is an absorbing subuniverse of an algebra given by the
tables of its basic operations.
acknowledgement: 'Libor Barto and Alexandr Kazda were supported by the the Grant Agency
of the Czech Republic, grant GACR 13-01832S. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Libor
full_name: Barto, Libor
last_name: Barto
- first_name: Alexandr
full_name: Kazda, Alexandr
id: 3B32BAA8-F248-11E8-B48F-1D18A9856A87
last_name: Kazda
citation:
ama: Barto L, Kazda A. Deciding absorption. International Journal of Algebra
and Computation. 2016;26(5):1033-1060. doi:10.1142/S0218196716500430
apa: Barto, L., & Kazda, A. (2016). Deciding absorption. International Journal
of Algebra and Computation. World Scientific Publishing. https://doi.org/10.1142/S0218196716500430
chicago: Barto, Libor, and Alexandr Kazda. “Deciding Absorption.” International
Journal of Algebra and Computation. World Scientific Publishing, 2016. https://doi.org/10.1142/S0218196716500430.
ieee: L. Barto and A. Kazda, “Deciding absorption,” International Journal of
Algebra and Computation, vol. 26, no. 5. World Scientific Publishing, pp.
1033–1060, 2016.
ista: Barto L, Kazda A. 2016. Deciding absorption. International Journal of Algebra
and Computation. 26(5), 1033–1060.
mla: Barto, Libor, and Alexandr Kazda. “Deciding Absorption.” International Journal
of Algebra and Computation, vol. 26, no. 5, World Scientific Publishing, 2016,
pp. 1033–60, doi:10.1142/S0218196716500430.
short: L. Barto, A. Kazda, International Journal of Algebra and Computation 26 (2016)
1033–1060.
date_created: 2018-12-11T11:51:32Z
date_published: 2016-07-20T00:00:00Z
date_updated: 2025-09-22T08:10:54Z
day: '20'
department:
- _id: VlKo
doi: 10.1142/S0218196716500430
external_id:
arxiv:
- '1512.07009'
isi:
- '000383151800008'
fulldoi: https://doi.org/10.1142/S0218196716500430
intvolume: ' 26'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1512.07009
month: '07'
oa: 1
oa_version: Preprint
page: 1033 - 1060
publication: International Journal of Algebra and Computation
publication_status: published
publisher: World Scientific Publishing
publist_id: '5893'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Deciding absorption
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 26
year: '2016'
...
---
_id: '1354'
abstract:
- lang: eng
text: Fabrication processes involving anhydrous hydrofluoric vapor etching are developed
to create high-Q aluminum superconducting microwave resonators on free-standing
silicon membranes formed from a silicon-on-insulator wafer. Using this fabrication
process, a high-impedance 8.9-GHz coil resonator is coupled capacitively with
a large participation ratio to a 9.7-MHz micromechanical resonator. Two-tone microwave
spectroscopy and radiation pressure backaction are used to characterize the coupled
system in a dilution refrigerator down to temperatures of Tf=11 mK, yielding
a measured electromechanical vacuum coupling rate of g0/2π=24.6 Hz and a mechanical
resonator Q factor of Qm=1.7×107. Microwave backaction cooling of the mechanical
resonator is also studied, with a minimum phonon occupancy of nm≈16 phonons being
realized at an elevated fridge temperature of Tf=211 mK.
article_number: '014013'
article_processing_charge: No
arxiv: 1
author:
- first_name: Paul
full_name: Dieterle, Paul
last_name: Dieterle
- first_name: Mahmoud
full_name: Kalaee, Mahmoud
last_name: Kalaee
- first_name: Johannes M
full_name: Fink, Johannes M
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
- first_name: Oskar
full_name: Painter, Oskar
last_name: Painter
citation:
ama: Dieterle P, Kalaee M, Fink JM, Painter O. Superconducting cavity electromechanics
on a silicon-on-insulator platform. Physical Review Applied. 2016;6(1).
doi:10.1103/PhysRevApplied.6.014013
apa: Dieterle, P., Kalaee, M., Fink, J. M., & Painter, O. (2016). Superconducting
cavity electromechanics on a silicon-on-insulator platform. Physical Review
Applied. American Physical Society. https://doi.org/10.1103/PhysRevApplied.6.014013
chicago: Dieterle, Paul, Mahmoud Kalaee, Johannes M Fink, and Oskar Painter. “Superconducting
Cavity Electromechanics on a Silicon-on-Insulator Platform.” Physical Review
Applied. American Physical Society, 2016. https://doi.org/10.1103/PhysRevApplied.6.014013.
ieee: P. Dieterle, M. Kalaee, J. M. Fink, and O. Painter, “Superconducting cavity
electromechanics on a silicon-on-insulator platform,” Physical Review Applied,
vol. 6, no. 1. American Physical Society, 2016.
ista: Dieterle P, Kalaee M, Fink JM, Painter O. 2016. Superconducting cavity electromechanics
on a silicon-on-insulator platform. Physical Review Applied. 6(1), 014013.
mla: Dieterle, Paul, et al. “Superconducting Cavity Electromechanics on a Silicon-on-Insulator
Platform.” Physical Review Applied, vol. 6, no. 1, 014013, American Physical
Society, 2016, doi:10.1103/PhysRevApplied.6.014013.
short: P. Dieterle, M. Kalaee, J.M. Fink, O. Painter, Physical Review Applied 6
(2016).
date_created: 2018-12-11T11:51:32Z
date_published: 2016-07-22T00:00:00Z
date_updated: 2025-09-22T08:10:19Z
day: '22'
department:
- _id: JoFi
doi: 10.1103/PhysRevApplied.6.014013
external_id:
arxiv:
- '1601.04019'
isi:
- '000380126300001'
fulldoi: https://doi.org/10.1103/PhysRevApplied.6.014013
intvolume: ' 6'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1601.04019
month: '07'
oa: 1
oa_version: Preprint
publication: Physical Review Applied
publication_status: published
publisher: American Physical Society
publist_id: '5892'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Superconducting cavity electromechanics on a silicon-on-insulator platform
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 6
year: '2016'
...
---
_id: '1355'
abstract:
- lang: eng
text: Radiation pressure has recently been used to effectively couple the quantum
motion of mechanical elements to the fields of optical or microwave light. Integration
of all three degrees of freedom—mechanical, optical and microwave—would enable
a quantum interconnect between microwave and optical quantum systems. We present
a platform based on silicon nitride nanomembranes for integrating superconducting
microwave circuits with planar acoustic and optical devices such as phononic and
photonic crystals. Using planar capacitors with vacuum gaps of 60 nm and spiral
inductor coils of micron pitch we realize microwave resonant circuits with large
electromechanical coupling to planar acoustic structures of nanoscale dimensions
and femtoFarad motional capacitance. Using this enhanced coupling, we demonstrate
microwave backaction cooling of the 4.48 MHz mechanical resonance of a nanobeam
to an occupancy as low as 0.32. These results indicate the viability of silicon
nitride nanomembranes as an all-in-one substrate for quantum electro-opto-mechanical
experiments.
acknowledgement: This work was supported by the DARPA MESO programme, the Institute
for Quantum Information and Matter, an NSF Physics Frontiers Center with support
of the Gordon and Betty Moore Foundation, and the Kavli Nanoscience Institute at
Caltech. A.P. was supported by a Marie Curie International Outgoing Fellowship within
the 7th European Community Framework Programme, NEMO (GA 298861). Certain commercial
equipment and software are identified in this documentation to describe the subject
adequately. Such identification does not imply recommendation or endorsement by
the NIST, nor does it imply that the equipment identified is necessarily the best
available for the purpose.
article_number: '12396'
article_processing_charge: No
author:
- first_name: Johannes M
full_name: Fink, Johannes M
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
- first_name: Mahmoud
full_name: Kalaee, Mahmoud
last_name: Kalaee
- first_name: Alessandro
full_name: Pitanti, Alessandro
last_name: Pitanti
- first_name: Richard
full_name: Norte, Richard
last_name: Norte
- first_name: Lukas
full_name: Heinzle, Lukas
last_name: Heinzle
- first_name: Marcelo
full_name: Davanço, Marcelo
last_name: Davanço
- first_name: Kartik
full_name: Srinivasan, Kartik
last_name: Srinivasan
- first_name: Oskar
full_name: Painter, Oskar
last_name: Painter
citation:
ama: Fink JM, Kalaee M, Pitanti A, et al. Quantum electromechanics on silicon nitride
nanomembranes. Nature Communications. 2016;7. doi:10.1038/ncomms12396
apa: Fink, J. M., Kalaee, M., Pitanti, A., Norte, R., Heinzle, L., Davanço, M.,
… Painter, O. (2016). Quantum electromechanics on silicon nitride nanomembranes.
Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms12396
chicago: Fink, Johannes M, Mahmoud Kalaee, Alessandro Pitanti, Richard Norte, Lukas
Heinzle, Marcelo Davanço, Kartik Srinivasan, and Oskar Painter. “Quantum Electromechanics
on Silicon Nitride Nanomembranes.” Nature Communications. Nature Publishing
Group, 2016. https://doi.org/10.1038/ncomms12396.
ieee: J. M. Fink et al., “Quantum electromechanics on silicon nitride nanomembranes,”
Nature Communications, vol. 7. Nature Publishing Group, 2016.
ista: Fink JM, Kalaee M, Pitanti A, Norte R, Heinzle L, Davanço M, Srinivasan K,
Painter O. 2016. Quantum electromechanics on silicon nitride nanomembranes. Nature
Communications. 7, 12396.
mla: Fink, Johannes M., et al. “Quantum Electromechanics on Silicon Nitride Nanomembranes.”
Nature Communications, vol. 7, 12396, Nature Publishing Group, 2016, doi:10.1038/ncomms12396.
short: J.M. Fink, M. Kalaee, A. Pitanti, R. Norte, L. Heinzle, M. Davanço, K. Srinivasan,
O. Painter, Nature Communications 7 (2016).
corr_author: '1'
date_created: 2018-12-11T11:51:33Z
date_published: 2016-08-03T00:00:00Z
date_updated: 2025-09-22T08:08:53Z
day: '03'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.1038/ncomms12396
external_id:
isi:
- '000380862600001'
file:
- access_level: open_access
checksum: 25513bd59d5bda495efa8f5920e91b22
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:30Z
date_updated: 2020-07-14T12:44:46Z
file_id: '5014'
file_name: IST-2016-629-v1+1_ncomms12396.pdf
file_size: 2139802
relation: main_file
file_date_updated: 2020-07-14T12:44:46Z
fulldoi: https://doi.org/10.1038/ncomms12396
has_accepted_license: '1'
intvolume: ' 7'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5891'
pubrep_id: '629'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum electromechanics on silicon nitride nanomembranes
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
---
_id: '1356'
article_processing_charge: No
author:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: Barton NH. Sewall Wright on evolution in Mendelian populations and the “Shifting
Balance.” Genetics. 2016;202(1):3-4. doi:10.1534/genetics.115.184796
apa: Barton, N. H. (2016). Sewall Wright on evolution in Mendelian populations and
the “Shifting Balance.” Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.115.184796
chicago: Barton, Nicholas H. “Sewall Wright on Evolution in Mendelian Populations
and the ‘Shifting Balance.’” Genetics. Genetics Society of America, 2016.
https://doi.org/10.1534/genetics.115.184796.
ieee: N. H. Barton, “Sewall Wright on evolution in Mendelian populations and the
‘Shifting Balance,’” Genetics, vol. 202, no. 1. Genetics Society of America,
pp. 3–4, 2016.
ista: Barton NH. 2016. Sewall Wright on evolution in Mendelian populations and the
“Shifting Balance”. Genetics. 202(1), 3–4.
mla: Barton, Nicholas H. “Sewall Wright on Evolution in Mendelian Populations and
the ‘Shifting Balance.’” Genetics, vol. 202, no. 1, Genetics Society of
America, 2016, pp. 3–4, doi:10.1534/genetics.115.184796.
short: N.H. Barton, Genetics 202 (2016) 3–4.
corr_author: '1'
date_created: 2018-12-11T11:51:33Z
date_published: 2016-01-05T00:00:00Z
date_updated: 2025-09-22T08:01:07Z
day: '05'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1534/genetics.115.184796
external_id:
isi:
- '000367718100002'
file:
- access_level: open_access
checksum: 3562b89c821a4be84edf2b6ebd870cf5
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:26Z
date_updated: 2020-07-14T12:44:46Z
file_id: '4687'
file_name: IST-2017-769-v1+1_SewallWright1931.pdf
file_size: 112674
relation: main_file
file_date_updated: 2020-07-14T12:44:46Z
fulldoi: https://doi.org/10.1534/genetics.115.184796
has_accepted_license: '1'
intvolume: ' 202'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 3 - 4
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '5889'
pubrep_id: '769'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sewall Wright on evolution in Mendelian populations and the “Shifting Balance”
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 202
year: '2016'
...
---
_id: '1357'
article_processing_charge: No
author:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: Barton NH. Richard Hudson and Norman Kaplan on the coalescent process. Genetics.
2016;202(3):865-866. doi:10.1534/genetics.116.187542
apa: Barton, N. H. (2016). Richard Hudson and Norman Kaplan on the coalescent process.
Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.116.187542
chicago: Barton, Nicholas H. “Richard Hudson and Norman Kaplan on the Coalescent
Process.” Genetics. Genetics Society of America, 2016. https://doi.org/10.1534/genetics.116.187542.
ieee: N. H. Barton, “Richard Hudson and Norman Kaplan on the coalescent process,”
Genetics, vol. 202, no. 3. Genetics Society of America, pp. 865–866, 2016.
ista: Barton NH. 2016. Richard Hudson and Norman Kaplan on the coalescent process.
Genetics. 202(3), 865–866.
mla: Barton, Nicholas H. “Richard Hudson and Norman Kaplan on the Coalescent Process.”
Genetics, vol. 202, no. 3, Genetics Society of America, 2016, pp. 865–66,
doi:10.1534/genetics.116.187542.
short: N.H. Barton, Genetics 202 (2016) 865–866.
corr_author: '1'
date_created: 2018-12-11T11:51:33Z
date_published: 2016-03-01T00:00:00Z
date_updated: 2025-09-22T07:56:18Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1534/genetics.116.187542
external_id:
isi:
- '000371596400001'
file:
- access_level: open_access
checksum: b2174bab2de1d1142900062a150f35c9
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:15:09Z
date_updated: 2020-07-14T12:44:46Z
file_id: '5127'
file_name: IST-2017-768-v1+1_Hudson-Kaplan-1988.pdf
file_size: 130779
relation: main_file
file_date_updated: 2020-07-14T12:44:46Z
fulldoi: https://doi.org/10.1534/genetics.116.187542
has_accepted_license: '1'
intvolume: ' 202'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 865 - 866
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '5888'
pubrep_id: '768'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Richard Hudson and Norman Kaplan on the coalescent process
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 202
year: '2016'
...
---
_id: '1358'
abstract:
- lang: eng
text: 'Gene regulation relies on the specificity of transcription factor (TF)–DNA
interactions. Limited specificity may lead to crosstalk: a regulatory state in
which a gene is either incorrectly activated due to noncognate TF–DNA interactions
or remains erroneously inactive. As each TF can have numerous interactions with
noncognate cis-regulatory elements, crosstalk is inherently a global problem,
yet has previously not been studied as such. We construct a theoretical framework
to analyse the effects of global crosstalk on gene regulation. We find that crosstalk
presents a significant challenge for organisms with low-specificity TFs, such
as metazoans. Crosstalk is not easily mitigated by known regulatory schemes acting
at equilibrium, including variants of cooperativity and combinatorial regulation.
Our results suggest that crosstalk imposes a previously unexplored global constraint
on the functioning and evolution of regulatory networks, which is qualitatively
distinct from the known constraints that act at the level of individual gene regulatory
elements.'
article_number: '12307'
article_processing_charge: No
author:
- first_name: Tamar
full_name: Friedlander, Tamar
id: 36A5845C-F248-11E8-B48F-1D18A9856A87
last_name: Friedlander
- first_name: Roshan
full_name: Prizak, Roshan
id: 4456104E-F248-11E8-B48F-1D18A9856A87
last_name: Prizak
- first_name: Calin C
full_name: Guet, Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
citation:
ama: Friedlander T, Prizak R, Guet CC, Barton NH, Tkačik G. Intrinsic limits to
gene regulation by global crosstalk. Nature Communications. 2016;7. doi:10.1038/ncomms12307
apa: Friedlander, T., Prizak, R., Guet, C. C., Barton, N. H., & Tkačik, G. (2016).
Intrinsic limits to gene regulation by global crosstalk. Nature Communications.
Nature Publishing Group. https://doi.org/10.1038/ncomms12307
chicago: Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and
Gašper Tkačik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.” Nature
Communications. Nature Publishing Group, 2016. https://doi.org/10.1038/ncomms12307.
ieee: T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkačik, “Intrinsic
limits to gene regulation by global crosstalk,” Nature Communications,
vol. 7. Nature Publishing Group, 2016.
ista: Friedlander T, Prizak R, Guet CC, Barton NH, Tkačik G. 2016. Intrinsic limits
to gene regulation by global crosstalk. Nature Communications. 7, 12307.
mla: Friedlander, Tamar, et al. “Intrinsic Limits to Gene Regulation by Global Crosstalk.”
Nature Communications, vol. 7, 12307, Nature Publishing Group, 2016, doi:10.1038/ncomms12307.
short: T. Friedlander, R. Prizak, C.C. Guet, N.H. Barton, G. Tkačik, Nature Communications
7 (2016).
corr_author: '1'
date_created: 2018-12-11T11:51:34Z
date_published: 2016-08-04T00:00:00Z
date_updated: 2026-04-08T13:54:24Z
day: '04'
ddc:
- '576'
department:
- _id: GaTk
- _id: NiBa
- _id: CaGu
doi: 10.1038/ncomms12307
ec_funded: 1
external_id:
isi:
- '000380858400001'
file:
- access_level: open_access
checksum: fe3f3a1526d180b29fe691ab11435b78
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:12:01Z
date_updated: 2020-07-14T12:44:46Z
file_id: '4919'
file_name: IST-2016-627-v1+1_ncomms12307.pdf
file_size: 861805
relation: main_file
- access_level: open_access
checksum: 164864a1a675f3ad80e9917c27aba07f
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:12:02Z
date_updated: 2020-07-14T12:44:46Z
file_id: '4920'
file_name: IST-2016-627-v1+2_ncomms12307-s1.pdf
file_size: 1084703
relation: main_file
file_date_updated: 2020-07-14T12:44:46Z
fulldoi: https://doi.org/10.1038/ncomms12307
has_accepted_license: '1'
intvolume: ' 7'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 25B07788-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '250152'
name: Limits to selection in biology and in evolutionary computation
- _id: 254E9036-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P28844-B27
name: Biophysics of information processing in gene regulation
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5887'
pubrep_id: '627'
quality_controlled: '1'
related_material:
record:
- id: '6071'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Intrinsic limits to gene regulation by global crosstalk
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
---
_id: '1359'
abstract:
- lang: eng
text: "The role of gene interactions in the evolutionary process has long\r\nbeen
controversial. Although some argue that they are not of\r\nimportance, because
most variation is additive, others claim that\r\ntheir effect in the long term
can be substantial. Here, we focus on\r\nthe long-term effects of genetic interactions
under directional\r\nselection assuming no mutation or dominance, and that epistasis
is\r\nsymmetrical overall. We ask by how much the mean of a complex\r\ntrait can
be increased by selection and analyze two extreme\r\nregimes, in which either
drift or selection dominate the dynamics\r\nof allele frequencies. In both scenarios,
epistatic interactions affect\r\nthe long-term response to selection by modulating
the additive\r\ngenetic variance. When drift dominates, we extend Robertson\r\n’\r\ns\r\n[Robertson
A (1960)\r\nProc R Soc Lond B Biol Sci\r\n153(951):234\r\n−\r\n249]\r\nargument
to show that, for any form of epistasis, the total response\r\nof a haploid population
is proportional to the initial total genotypic\r\nvariance. In contrast, the total
response of a diploid population is\r\nincreased by epistasis, for a given initial
genotypic variance. When\r\nselection dominates, we show that the total selection
response can\r\nonly be increased by epistasis when s\r\nome initially deleterious
alleles\r\nbecome favored as the genetic background changes. We find a sim-\r\nple
approximation for this effect and show that, in this regime, it is\r\nthe structure
of the genotype - phenotype map that matters and not\r\nthe variance components
of the population."
article_processing_charge: No
article_type: original
author:
- first_name: Tiago
full_name: Paixao, Tiago
id: 2C5658E6-F248-11E8-B48F-1D18A9856A87
last_name: Paixao
orcid: 0000-0003-2361-3953
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: Paixao T, Barton NH. The effect of gene interactions on the long-term response
to selection. PNAS. 2016;113(16):4422-4427. doi:10.1073/pnas.1518830113
apa: Paixao, T., & Barton, N. H. (2016). The effect of gene interactions on
the long-term response to selection. PNAS. National Academy of Sciences.
https://doi.org/10.1073/pnas.1518830113
chicago: Paixao, Tiago, and Nicholas H Barton. “The Effect of Gene Interactions
on the Long-Term Response to Selection.” PNAS. National Academy of Sciences,
2016. https://doi.org/10.1073/pnas.1518830113.
ieee: T. Paixao and N. H. Barton, “The effect of gene interactions on the long-term
response to selection,” PNAS, vol. 113, no. 16. National Academy of Sciences,
pp. 4422–4427, 2016.
ista: Paixao T, Barton NH. 2016. The effect of gene interactions on the long-term
response to selection. PNAS. 113(16), 4422–4427.
mla: Paixao, Tiago, and Nicholas H. Barton. “The Effect of Gene Interactions on
the Long-Term Response to Selection.” PNAS, vol. 113, no. 16, National
Academy of Sciences, 2016, pp. 4422–27, doi:10.1073/pnas.1518830113.
short: T. Paixao, N.H. Barton, PNAS 113 (2016) 4422–4427.
corr_author: '1'
date_created: 2018-12-11T11:51:34Z
date_published: 2016-04-19T00:00:00Z
date_updated: 2026-06-18T17:31:02Z
day: '19'
ddc:
- '570'
department:
- _id: NiBa
- _id: CaGu
doi: 10.1073/pnas.1518830113
ec_funded: 1
external_id:
isi:
- '000374393800056'
pmid:
- '27044080'
fulldoi: https://doi.org/10.1073/pnas.1518830113
intvolume: ' 113'
isi: 1
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4843425/
month: '04'
oa: 1
oa_version: Published Version
page: 4422 - 4427
pmid: 1
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '250152'
name: Limits to selection in biology and in evolutionary computation
- _id: 25B1EC9E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '618091'
name: Speed of Adaptation in Population Genetics and Evolutionary Computation
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5886'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The effect of gene interactions on the long-term response to selection
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 113
year: '2016'
...
---
_id: '1360'
abstract:
- lang: eng
text: 'We apply the technique of Károly Bezdek and Daniel Bezdek to study billiard
trajectories in convex bodies, when the length is measured with a (possibly asymmetric)
norm. We prove a lower bound for the length of the shortest closed billiard trajectory,
related to the non-symmetric Mahler problem. With this technique we are able to
give short and elementary proofs to some known results. '
acknowledgement: The first and third authors were supported by the Dynasty Foundation.
The first, second and third authors were supported by the Russian Foundation for
Basic Re- search grant 15-31-20403 (mol a ved).
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
full_name: Akopyan, Arseniy
id: 430D2C90-F248-11E8-B48F-1D18A9856A87
last_name: Akopyan
orcid: 0000-0002-2548-617X
- first_name: Alexey
full_name: Balitskiy, Alexey
last_name: Balitskiy
- first_name: Roman
full_name: Karasev, Roman
last_name: Karasev
- first_name: Anastasia
full_name: Sharipova, Anastasia
last_name: Sharipova
citation:
ama: Akopyan A, Balitskiy A, Karasev R, Sharipova A. Elementary approach to closed
billiard trajectories in asymmetric normed spaces. Proceedings of the American
Mathematical Society. 2016;144(10):4501-4513. doi:10.1090/proc/13062
apa: Akopyan, A., Balitskiy, A., Karasev, R., & Sharipova, A. (2016). Elementary
approach to closed billiard trajectories in asymmetric normed spaces. Proceedings
of the American Mathematical Society. American Mathematical Society. https://doi.org/10.1090/proc/13062
chicago: Akopyan, Arseniy, Alexey Balitskiy, Roman Karasev, and Anastasia Sharipova.
“Elementary Approach to Closed Billiard Trajectories in Asymmetric Normed Spaces.”
Proceedings of the American Mathematical Society. American Mathematical
Society, 2016. https://doi.org/10.1090/proc/13062.
ieee: A. Akopyan, A. Balitskiy, R. Karasev, and A. Sharipova, “Elementary approach
to closed billiard trajectories in asymmetric normed spaces,” Proceedings of
the American Mathematical Society, vol. 144, no. 10. American Mathematical
Society, pp. 4501–4513, 2016.
ista: Akopyan A, Balitskiy A, Karasev R, Sharipova A. 2016. Elementary approach
to closed billiard trajectories in asymmetric normed spaces. Proceedings of the
American Mathematical Society. 144(10), 4501–4513.
mla: Akopyan, Arseniy, et al. “Elementary Approach to Closed Billiard Trajectories
in Asymmetric Normed Spaces.” Proceedings of the American Mathematical Society,
vol. 144, no. 10, American Mathematical Society, 2016, pp. 4501–13, doi:10.1090/proc/13062.
short: A. Akopyan, A. Balitskiy, R. Karasev, A. Sharipova, Proceedings of the American
Mathematical Society 144 (2016) 4501–4513.
date_created: 2018-12-11T11:51:34Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2025-09-22T07:44:59Z
day: '01'
department:
- _id: HeEd
doi: 10.1090/proc/13062
ec_funded: 1
external_id:
arxiv:
- '1401.0442'
isi:
- '000383054200034'
fulldoi: https://doi.org/10.1090/proc/13062
intvolume: ' 144'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1401.0442
month: '10'
oa: 1
oa_version: Preprint
page: 4501 - 4513
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Proceedings of the American Mathematical Society
publication_status: published
publisher: American Mathematical Society
publist_id: '5885'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Elementary approach to closed billiard trajectories in asymmetric normed spaces
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 144
year: '2016'
...
---
_id: '1361'
abstract:
- lang: eng
text: We propose a novel surface-only technique for simulating incompressible, inviscid
and uniform-density liquids with surface tension in three dimensions. The liquid
surface is captured by a triangle mesh on which a Lagrangian velocity field is
stored. Because advection of the velocity field may violate the incompressibility
condition, we devise an orthogonal projection technique to remove the divergence
while requiring the evaluation of only two boundary integrals. The forces of surface
tension, gravity, and solid contact are all treated by a boundary element solve,
allowing us to perform detailed simulations of a wide range of liquid phenomena,
including waterbells, droplet and jet collisions, fluid chains, and crown splashes.
alternative_title:
- ACM Transactions on Graphics
article_number: a78
article_processing_charge: No
author:
- first_name: Fang
full_name: Da, Fang
last_name: Da
- first_name: David
full_name: Hahn, David
id: 357A6A66-F248-11E8-B48F-1D18A9856A87
last_name: Hahn
- first_name: Christopher
full_name: Batty, Christopher
last_name: Batty
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
- first_name: Eitan
full_name: Grinspun, Eitan
last_name: Grinspun
citation:
ama: 'Da F, Hahn D, Batty C, Wojtan C, Grinspun E. Surface only liquids. In: Vol
35. ACM; 2016. doi:10.1145/2897824.2925899'
apa: 'Da, F., Hahn, D., Batty, C., Wojtan, C., & Grinspun, E. (2016). Surface
only liquids (Vol. 35). Presented at the ACM SIGGRAPH, Anaheim, CA, USA: ACM.
https://doi.org/10.1145/2897824.2925899'
chicago: Da, Fang, David Hahn, Christopher Batty, Chris Wojtan, and Eitan Grinspun.
“Surface Only Liquids,” Vol. 35. ACM, 2016. https://doi.org/10.1145/2897824.2925899.
ieee: F. Da, D. Hahn, C. Batty, C. Wojtan, and E. Grinspun, “Surface only liquids,”
presented at the ACM SIGGRAPH, Anaheim, CA, USA, 2016, vol. 35, no. 4.
ista: Da F, Hahn D, Batty C, Wojtan C, Grinspun E. 2016. Surface only liquids. ACM
SIGGRAPH, ACM Transactions on Graphics, vol. 35, a78.
mla: Da, Fang, et al. Surface Only Liquids. Vol. 35, no. 4, a78, ACM, 2016,
doi:10.1145/2897824.2925899.
short: F. Da, D. Hahn, C. Batty, C. Wojtan, E. Grinspun, in:, ACM, 2016.
conference:
end_date: 2016-07-28
location: Anaheim, CA, USA
name: ACM SIGGRAPH
start_date: 2016-07-24
date_created: 2018-12-11T11:51:35Z
date_published: 2016-07-11T00:00:00Z
date_updated: 2025-09-22T07:44:26Z
day: '11'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1145/2897824.2925899
ec_funded: 1
external_id:
isi:
- '000380112400048'
file:
- access_level: open_access
checksum: 6d662893bd447d4f575b4961a2247811
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:01Z
date_updated: 2020-07-14T12:44:46Z
file_id: '4660'
file_name: IST-2016-637-v1+1_2016_Da_SOL.pdf
file_size: 10561865
relation: main_file
file_date_updated: 2020-07-14T12:44:46Z
fulldoi: https://doi.org/10.1145/2897824.2925899
has_accepted_license: '1'
intvolume: ' 35'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '638176'
name: 'Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large
Scales'
publication_status: published
publisher: ACM
publist_id: '5881'
pubrep_id: '637'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Surface only liquids
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 35
year: '2016'
...
---
_id: '1363'
abstract:
- lang: eng
text: When aiming to seamlessly integrate a fluid simulation into a larger scenario
(like an open ocean), careful attention must be paid to boundary conditions. In
particular, one must implement special "non-reflecting" boundary conditions,
which dissipate out-going waves as they exit the simulation. Unfortunately, the
state of the art in non-reflecting boundary conditions (perfectly-matched layers,
or PMLs) only permits trivially simple inflow/outflow conditions, so there is
no reliable way to integrate a fluid simulation into a more complicated environment
like a stormy ocean or a turbulent river. This paper introduces the first method
for combining nonreflecting boundary conditions based on PMLs with inflow/outflow
boundary conditions that vary arbitrarily throughout space and time. Our algorithm
is a generalization of stateof- the-art mean-flow boundary conditions in the computational
fluid dynamics literature, and it allows for seamless integration of a fluid simulation
into much more complicated environments. Our method also opens the door for previously-unseen
postprocess effects like retroactively changing the location of solid obstacles,
and locally increasing the visual detail of a pre-existing simulation.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: 'We thank the IST Austria Visual Computing group for helpful feedback
throughout the project. '
alternative_title:
- ACM Transactions on Graphics
article_number: '96'
article_processing_charge: No
author:
- first_name: Morten
full_name: Bojsen-Hansen, Morten
id: 439F0C8C-F248-11E8-B48F-1D18A9856A87
last_name: Bojsen-Hansen
orcid: 0000-0002-4417-3224
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: 'Bojsen-Hansen M, Wojtan C. Generalized non-reflecting boundaries for fluid
re-simulation. In: Vol 35. ACM; 2016. doi:10.1145/2897824.2925963'
apa: 'Bojsen-Hansen, M., & Wojtan, C. (2016). Generalized non-reflecting boundaries
for fluid re-simulation (Vol. 35). Presented at the ACM SIGGRAPH, Anaheim, CA,
USA: ACM. https://doi.org/10.1145/2897824.2925963'
chicago: Bojsen-Hansen, Morten, and Chris Wojtan. “Generalized Non-Reflecting Boundaries
for Fluid Re-Simulation,” Vol. 35. ACM, 2016. https://doi.org/10.1145/2897824.2925963.
ieee: M. Bojsen-Hansen and C. Wojtan, “Generalized non-reflecting boundaries for
fluid re-simulation,” presented at the ACM SIGGRAPH, Anaheim, CA, USA, 2016, vol.
35, no. 4.
ista: Bojsen-Hansen M, Wojtan C. 2016. Generalized non-reflecting boundaries for
fluid re-simulation. ACM SIGGRAPH, ACM Transactions on Graphics, vol. 35, 96.
mla: Bojsen-Hansen, Morten, and Chris Wojtan. Generalized Non-Reflecting Boundaries
for Fluid Re-Simulation. Vol. 35, no. 4, 96, ACM, 2016, doi:10.1145/2897824.2925963.
short: M. Bojsen-Hansen, C. Wojtan, in:, ACM, 2016.
conference:
end_date: 2016-07-28
location: Anaheim, CA, USA
name: ACM SIGGRAPH
start_date: 2016-07-24
corr_author: '1'
date_created: 2018-12-11T11:51:35Z
date_published: 2016-07-11T00:00:00Z
date_updated: 2025-09-22T07:43:01Z
day: '11'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1145/2897824.2925963
ec_funded: 1
external_id:
isi:
- '000380112400066'
file:
- access_level: open_access
checksum: 140b5532f0a2a006a0149cab7c73c17c
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:00Z
date_updated: 2020-07-14T12:44:47Z
file_id: '4981'
file_name: IST-2016-631-v1+2_a96-bojsen-hansen.pdf
file_size: 12422760
relation: main_file
file_date_updated: 2020-07-14T12:44:47Z
fulldoi: https://doi.org/10.1145/2897824.2925963
has_accepted_license: '1'
intvolume: ' 35'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '638176'
name: 'Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large
Scales'
publication_status: published
publisher: ACM
publist_id: '5879'
pubrep_id: '631'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generalized non-reflecting boundaries for fluid re-simulation
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 35
year: '2016'
...
---
_id: '1364'
abstract:
- lang: eng
text: We present a computational method for designing wire sculptures consisting
of interlocking wires. Our method allows the computation of aesthetically pleasing
structures that are structurally stable, efficiently fabricatable with a 2D wire
bending machine, and assemblable without the need of additional connectors. Starting
from a set of planar contours provided by the user, our method automatically tests
for the feasibility of a design, determines a discrete ordering of wires at intersection
points, and optimizes for the rest shape of the individual wires to maximize structural
stability under frictional contact. In addition to their application to art, wire
sculptures present an extremely efficient and fast alternative for low-fidelity
rapid prototyping because manufacturing time and required material linearly scales
with the physical size of objects. We demonstrate the effectiveness of our approach
on a varied set of examples, all of which we fabricated.
acknowledgement: This project has received funding from the European Union’s Horizon
2020 research and innovation programme under grant agreement No 645599.
alternative_title:
- ACM Transactions on Graphics
article_number: '86'
article_processing_charge: No
author:
- first_name: Eder
full_name: Miguel Villalba, Eder
id: 3FB91342-F248-11E8-B48F-1D18A9856A87
last_name: Miguel Villalba
orcid: 0000-0001-5665-0430
- first_name: Mathias
full_name: Lepoutre, Mathias
last_name: Lepoutre
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
citation:
ama: 'Miguel Villalba E, Lepoutre M, Bickel B. Computational design of stable planar-rod
structures. In: Vol 35. ACM; 2016. doi:10.1145/2897824.2925978'
apa: 'Miguel Villalba, E., Lepoutre, M., & Bickel, B. (2016). Computational
design of stable planar-rod structures (Vol. 35). Presented at the ACM SIGGRAPH,
Anaheim, CA, USA: ACM. https://doi.org/10.1145/2897824.2925978'
chicago: Miguel Villalba, Eder, Mathias Lepoutre, and Bernd Bickel. “Computational
Design of Stable Planar-Rod Structures,” Vol. 35. ACM, 2016. https://doi.org/10.1145/2897824.2925978.
ieee: E. Miguel Villalba, M. Lepoutre, and B. Bickel, “Computational design of stable
planar-rod structures,” presented at the ACM SIGGRAPH, Anaheim, CA, USA, 2016,
vol. 35, no. 4.
ista: Miguel Villalba E, Lepoutre M, Bickel B. 2016. Computational design of stable
planar-rod structures. ACM SIGGRAPH, ACM Transactions on Graphics, vol. 35, 86.
mla: Miguel Villalba, Eder, et al. Computational Design of Stable Planar-Rod
Structures. Vol. 35, no. 4, 86, ACM, 2016, doi:10.1145/2897824.2925978.
short: E. Miguel Villalba, M. Lepoutre, B. Bickel, in:, ACM, 2016.
conference:
end_date: 2016-07-28
location: Anaheim, CA, USA
name: ACM SIGGRAPH
start_date: 2016-07-24
corr_author: '1'
date_created: 2018-12-11T11:51:36Z
date_published: 2016-07-01T00:00:00Z
date_updated: 2025-09-22T07:42:15Z
day: '01'
ddc:
- '006'
department:
- _id: BeBi
doi: 10.1145/2897824.2925978
ec_funded: 1
external_id:
isi:
- '000380112400056'
file:
- access_level: open_access
checksum: d00c2664a43d945df8876ea0193734e3
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:11:01Z
date_updated: 2020-07-14T12:44:47Z
file_id: '4853'
file_name: IST-2017-763-v1+1_wirebending.pdf
file_size: 44766392
relation: main_file
file_date_updated: 2020-07-14T12:44:47Z
fulldoi: https://doi.org/10.1145/2897824.2925978
has_accepted_license: '1'
intvolume: ' 35'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 25082902-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '645599'
name: Soft-bodied intelligence for Manipulation
publication_status: published
publisher: ACM
publist_id: '5878'
pubrep_id: '763'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Computational design of stable planar-rod structures
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 35
year: '2016'
...
---
_id: '1365'
abstract:
- lang: eng
text: A memory-hard function (MHF) f is equipped with a space cost σ and time cost
τ parameter such that repeatedly computing fσ,τ on an application specific integrated
circuit (ASIC) is not economically advantageous relative to a general purpose
computer. Technically we would like that any (generalized) circuit for evaluating
an iMHF fσ,τ has area × time (AT) complexity at Θ(σ2 ∗ τ). A data-independent
MHF (iMHF) has the added property that it can be computed with almost optimal
memory and time complexity by an algorithm which accesses memory in a pattern
independent of the input value. Such functions can be specified by fixing a directed
acyclic graph (DAG) G on n = Θ(σ ∗ τ) nodes representing its computation graph.
In this work we develop new tools for analyzing iMHFs. First we define and motivate
a new complexity measure capturing the amount of energy (i.e. electricity) required
to compute a function. We argue that, in practice, this measure is at least as
important as the more traditional AT-complexity. Next we describe an algorithm
A for repeatedly evaluating an iMHF based on an arbitrary DAG G. We upperbound
both its energy and AT complexities per instance evaluated in terms of a certain
combinatorial property of G. Next we instantiate our attack for several general
classes of DAGs which include those underlying many of the most important iMHF
candidates in the literature. In particular, we obtain the following results which
hold for all choices of parameters σ and τ (and thread-count) such that n = σ
∗ τ. -The Catena-Dragonfly function of [FLW13] has AT and energy complexities
O(n1.67). -The Catena-Butterfly function of [FLW13] has complexities is O(n1.67).
-The Double-Buffer and the Linear functions of [CGBS16] both have complexities
in O(n1.67). -The Argon2i function of [BDK15] (winner of the Password Hashing
Competition [PHC]) has complexities O(n7/4 log(n)). -The Single-Buffer function
of [CGBS16] has complexities O(n7/4 log(n)). -Any iMHF can be computed by an algorithm
with complexities O(n2/ log1 −ε(n)) for all ε > 0. In particular when τ = 1
this shows that the goal of constructing an iMHF with AT-complexity Θ(σ2 ∗ τ )
is unachievable. Along the way we prove a lemma upper-bounding the depth-robustness
of any DAG which may prove to be of independent interest.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Joel F
full_name: Alwen, Joel F
id: 2A8DFA8C-F248-11E8-B48F-1D18A9856A87
last_name: Alwen
- first_name: Jeremiah
full_name: Blocki, Jeremiah
last_name: Blocki
citation:
ama: 'Alwen JF, Blocki J. Efficiently computing data-independent memory-hard functions.
In: Vol 9815. Springer; 2016:241-271. doi:10.1007/978-3-662-53008-5_9'
apa: 'Alwen, J. F., & Blocki, J. (2016). Efficiently computing data-independent
memory-hard functions (Vol. 9815, pp. 241–271). Presented at the CRYPTO: International
Cryptology Conference, Santa Barbara, CA, USA: Springer. https://doi.org/10.1007/978-3-662-53008-5_9'
chicago: Alwen, Joel F, and Jeremiah Blocki. “Efficiently Computing Data-Independent
Memory-Hard Functions,” 9815:241–71. Springer, 2016. https://doi.org/10.1007/978-3-662-53008-5_9.
ieee: 'J. F. Alwen and J. Blocki, “Efficiently computing data-independent memory-hard
functions,” presented at the CRYPTO: International Cryptology Conference, Santa
Barbara, CA, USA, 2016, vol. 9815, pp. 241–271.'
ista: 'Alwen JF, Blocki J. 2016. Efficiently computing data-independent memory-hard
functions. CRYPTO: International Cryptology Conference, LNCS, vol. 9815, 241–271.'
mla: Alwen, Joel F., and Jeremiah Blocki. Efficiently Computing Data-Independent
Memory-Hard Functions. Vol. 9815, Springer, 2016, pp. 241–71, doi:10.1007/978-3-662-53008-5_9.
short: J.F. Alwen, J. Blocki, in:, Springer, 2016, pp. 241–271.
conference:
end_date: 2016-08-18
location: Santa Barbara, CA, USA
name: 'CRYPTO: International Cryptology Conference'
start_date: 2016-08-14
cryptoeprintid: 1
das_tickbox: '1'
date_created: 2018-12-11T11:51:36Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2026-06-22T14:07:59Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-662-53008-5_9
external_id:
cryptoeprintid:
- 2016/115
isi:
- '000416104300009'
fulldoi: https://doi.org/10.1007/978-3-662-53008-5_9
intvolume: ' 9815'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://eprint.iacr.org/2016/115
month: '08'
oa: 1
oa_version: Preprint
page: 241 - 271
publication_status: published
publisher: Springer
publist_id: '5876'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficiently computing data-independent memory-hard functions
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9815
year: '2016'
...
---
_id: '1366'
abstract:
- lang: eng
text: 'We study the problem of devising provably secure PRNGs with input based on
the sponge paradigm. Such constructions are very appealing, as efficient software/hardware
implementations of SHA-3 can easily be translated into a PRNG in a nearly black-box
way. The only existing sponge-based construction, proposed by Bertoni et al. (CHES
2010), fails to achieve the security notion of robustness recently considered
by Dodis et al. (CCS 2013), for two reasons: (1) The construction is deterministic,
and thus there are high-entropy input distributions on which the construction
fails to extract random bits, and (2) The construction is not forward secure,
and presented solutions aiming at restoring forward security have not been rigorously
analyzed. We propose a seeded variant of Bertoni et al.’s PRNG with input which
we prove secure in the sense of robustness, delivering in particular concrete
security bounds. On the way, we make what we believe to be an important conceptual
contribution, developing a variant of the security framework of Dodis et al. tailored
at the ideal permutation model that captures PRNG security in settings where the
weakly random inputs are provided from a large class of possible adversarial samplers
which are also allowed to query the random permutation. As a further application
of our techniques, we also present an efficient sponge-based key-derivation function
(which can be instantiated from SHA-3 in a black-box fashion), which we also prove
secure when fed with samples from permutation-dependent distributions.'
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Peter
full_name: Gazi, Peter
id: 3E0BFE38-F248-11E8-B48F-1D18A9856A87
last_name: Gazi
- first_name: Stefano
full_name: Tessaro, Stefano
last_name: Tessaro
citation:
ama: 'Gazi P, Tessaro S. Provably robust sponge-based PRNGs and KDFs. In: Vol 9665.
Springer; 2016:87-116. doi:10.1007/978-3-662-49890-3_4'
apa: 'Gazi, P., & Tessaro, S. (2016). Provably robust sponge-based PRNGs and
KDFs (Vol. 9665, pp. 87–116). Presented at the EUROCRYPT: Theory and Applications
of Cryptographic Techniques, Vienna, Austria: Springer. https://doi.org/10.1007/978-3-662-49890-3_4'
chicago: Gazi, Peter, and Stefano Tessaro. “Provably Robust Sponge-Based PRNGs and
KDFs,” 9665:87–116. Springer, 2016. https://doi.org/10.1007/978-3-662-49890-3_4.
ieee: 'P. Gazi and S. Tessaro, “Provably robust sponge-based PRNGs and KDFs,” presented
at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Vienna,
Austria, 2016, vol. 9665, pp. 87–116.'
ista: 'Gazi P, Tessaro S. 2016. Provably robust sponge-based PRNGs and KDFs. EUROCRYPT:
Theory and Applications of Cryptographic Techniques, LNCS, vol. 9665, 87–116.'
mla: Gazi, Peter, and Stefano Tessaro. Provably Robust Sponge-Based PRNGs and
KDFs. Vol. 9665, Springer, 2016, pp. 87–116, doi:10.1007/978-3-662-49890-3_4.
short: P. Gazi, S. Tessaro, in:, Springer, 2016, pp. 87–116.
conference:
end_date: 2016-05-12
location: Vienna, Austria
name: 'EUROCRYPT: Theory and Applications of Cryptographic Techniques'
start_date: 2016-05-08
corr_author: '1'
date_created: 2018-12-11T11:51:36Z
date_published: 2016-05-01T00:00:00Z
date_updated: 2025-09-22T07:40:51Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-662-49890-3_4
ec_funded: 1
external_id:
isi:
- '000389727400004'
fulldoi: https://doi.org/10.1007/978-3-662-49890-3_4
intvolume: ' 9665'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2016/169/20160219:201940
month: '05'
oa: 1
oa_version: Preprint
page: 87 - 116
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '259668'
name: Provable Security for Physical Cryptography
publication_status: published
publisher: Springer
publist_id: '5872'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Provably robust sponge-based PRNGs and KDFs
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9665
year: '2016'
...
---
_id: '1369'
abstract:
- lang: eng
text: 'We introduce a new loss function for the weakly-supervised training of semantic
image segmentation models based on three guiding principles: to seed with weak
localization cues, to expand objects based on the information about which classes
can occur in an image, and to constrain the segmentations to coincide with object
boundaries. We show experimentally that training a deep convolutional neural network
using the proposed loss function leads to substantially better segmentations than
previous state-of-the-art methods on the challenging PASCAL VOC 2012 dataset.
We furthermore give insight into the working mechanism of our method by a detailed
experimental study that illustrates how the segmentation quality is affected by
each term of the proposed loss function as well as their combinations.'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Alexander
full_name: Kolesnikov, Alexander
id: 2D157DB6-F248-11E8-B48F-1D18A9856A87
last_name: Kolesnikov
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Kolesnikov A, Lampert C. Seed, expand and constrain: Three principles for
weakly-supervised image segmentation. In: Vol 9908. Springer; 2016:695-711. doi:10.1007/978-3-319-46493-0_42'
apa: 'Kolesnikov, A., & Lampert, C. (2016). Seed, expand and constrain: Three
principles for weakly-supervised image segmentation (Vol. 9908, pp. 695–711).
Presented at the ECCV: European Conference on Computer Vision, Amsterdam, The
Netherlands: Springer. https://doi.org/10.1007/978-3-319-46493-0_42'
chicago: 'Kolesnikov, Alexander, and Christoph Lampert. “Seed, Expand and Constrain:
Three Principles for Weakly-Supervised Image Segmentation,” 9908:695–711. Springer,
2016. https://doi.org/10.1007/978-3-319-46493-0_42.'
ieee: 'A. Kolesnikov and C. Lampert, “Seed, expand and constrain: Three principles
for weakly-supervised image segmentation,” presented at the ECCV: European Conference
on Computer Vision, Amsterdam, The Netherlands, 2016, vol. 9908, pp. 695–711.'
ista: 'Kolesnikov A, Lampert C. 2016. Seed, expand and constrain: Three principles
for weakly-supervised image segmentation. ECCV: European Conference on Computer
Vision, LNCS, vol. 9908, 695–711.'
mla: 'Kolesnikov, Alexander, and Christoph Lampert. Seed, Expand and Constrain:
Three Principles for Weakly-Supervised Image Segmentation. Vol. 9908, Springer,
2016, pp. 695–711, doi:10.1007/978-3-319-46493-0_42.'
short: A. Kolesnikov, C. Lampert, in:, Springer, 2016, pp. 695–711.
conference:
end_date: 2016-10-14
location: Amsterdam, The Netherlands
name: 'ECCV: European Conference on Computer Vision'
start_date: 2016-10-11
corr_author: '1'
date_created: 2018-12-11T11:51:37Z
date_published: 2016-09-15T00:00:00Z
date_updated: 2025-09-22T07:39:37Z
day: '15'
department:
- _id: ChLa
doi: 10.1007/978-3-319-46493-0_42
ec_funded: 1
external_id:
arxiv:
- '1603.06098'
isi:
- '000389385100042'
fulldoi: https://doi.org/10.1007/978-3-319-46493-0_42
intvolume: ' 9908'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1603.06098
month: '09'
oa: 1
oa_version: Preprint
page: 695 - 711
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '308036'
name: Lifelong Learning of Visual Scene Understanding
publication_status: published
publisher: Springer
publist_id: '5842'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Seed, expand and constrain: Three principles for weakly-supervised image segmentation'
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9908
year: '2016'
...
---
_id: '1372'
abstract:
- lang: eng
text: Redirection of intercellular auxin fluxes via relocalization of the PIN-FORMED
3 (PIN3) and PIN7 auxin efflux carriers has been suggested to be necessary for
the root gravitropic response. Cytokinins have also been proposed to play a role
in controlling root gravitropism, but conclusive evidence is lacking. We present
a detailed study of the dynamics of root bending early after gravistimulation,
which revealed a delayed gravitropic response in transgenic lines with depleted
endogenous cytokinins (Pro35S:AtCKX) and cytokinin signaling mutants. Pro35S:AtCKX
lines, as well as a cytokinin receptor mutant ahk3, showed aberrations in the
auxin response distribution in columella cells consistent with defects in the
auxin transport machinery. Using in vivo real-time imaging of PIN3-GFP and PIN7-GFP
in AtCKX3 overexpression and ahk3 backgrounds, we observed wild-type-like relocalization
of PIN proteins in the columella early after gravistimulation, with gravity-induced
relocalization of PIN7 faster than that of PIN3. Nonetheless, the cellular distribution
of PIN3 and PIN7 and expression of PIN7 and the auxin influx carrier AUX1 was
affected in AtCKX overexpression lines. Based on the retained cytokinin sensitivity
in pin3 pin4 pin7 mutant, we propose the AUX1-mediated auxin transport rather
than columella-located PIN proteins as a target of endogenous cytokinins in the
control of root gravitropism.
acknowledgement: 'Funded by Ministry of Education, Youth and Sports Czech Republic.
Grant Numbers: CEITEC 2020, LQ1601, LO1204, LH14104 and The European Research Council.
Grant Number: ERC-2011-StG-20101109-PSDP and The Czech Science Foundation. Grant
Numbers: GAP501/11/1150, GA13-40637S, GP14-30004P'
article_processing_charge: No
author:
- first_name: Markéta
full_name: Pernisová, Markéta
last_name: Pernisová
- first_name: Tomas
full_name: Prat, Tomas
id: 3DA3BFEE-F248-11E8-B48F-1D18A9856A87
last_name: Prat
- first_name: Peter
full_name: Grones, Peter
id: 399876EC-F248-11E8-B48F-1D18A9856A87
last_name: Grones
- first_name: Danka
full_name: Haruštiaková, Danka
last_name: Haruštiaková
- first_name: Martina
full_name: Matonohova, Martina
last_name: Matonohova
- first_name: Lukáš
full_name: Spíchal, Lukáš
last_name: Spíchal
- first_name: Tomasz
full_name: Nodzyński, Tomasz
last_name: Nodzyński
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Jan
full_name: Hejátko, Jan
last_name: Hejátko
citation:
ama: Pernisová M, Prat T, Grones P, et al. Cytokinins influence root gravitropism
via differential regulation of auxin transporter expression and localization in
Arabidopsis. New Phytologist. 2016;212(2):497-509. doi:10.1111/nph.14049
apa: Pernisová, M., Prat, T., Grones, P., Haruštiaková, D., Matonohova, M., Spíchal,
L., … Hejátko, J. (2016). Cytokinins influence root gravitropism via differential
regulation of auxin transporter expression and localization in Arabidopsis. New
Phytologist. Wiley-Blackwell. https://doi.org/10.1111/nph.14049
chicago: Pernisová, Markéta, Tomas Prat, Peter Grones, Danka Haruštiaková, Martina
Matonohova, Lukáš Spíchal, Tomasz Nodzyński, Jiří Friml, and Jan Hejátko. “Cytokinins
Influence Root Gravitropism via Differential Regulation of Auxin Transporter Expression
and Localization in Arabidopsis.” New Phytologist. Wiley-Blackwell, 2016.
https://doi.org/10.1111/nph.14049.
ieee: M. Pernisová et al., “Cytokinins influence root gravitropism via differential
regulation of auxin transporter expression and localization in Arabidopsis,” New
Phytologist, vol. 212, no. 2. Wiley-Blackwell, pp. 497–509, 2016.
ista: Pernisová M, Prat T, Grones P, Haruštiaková D, Matonohova M, Spíchal L, Nodzyński
T, Friml J, Hejátko J. 2016. Cytokinins influence root gravitropism via differential
regulation of auxin transporter expression and localization in Arabidopsis. New
Phytologist. 212(2), 497–509.
mla: Pernisová, Markéta, et al. “Cytokinins Influence Root Gravitropism via Differential
Regulation of Auxin Transporter Expression and Localization in Arabidopsis.” New
Phytologist, vol. 212, no. 2, Wiley-Blackwell, 2016, pp. 497–509, doi:10.1111/nph.14049.
short: M. Pernisová, T. Prat, P. Grones, D. Haruštiaková, M. Matonohova, L. Spíchal,
T. Nodzyński, J. Friml, J. Hejátko, New Phytologist 212 (2016) 497–509.
date_created: 2018-12-11T11:51:38Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2025-09-22T07:36:11Z
day: '01'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1111/nph.14049
external_id:
isi:
- '000383595700023'
file:
- access_level: open_access
checksum: 27fd841ceaf0403559d7048ef51500f9
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:14:53Z
date_updated: 2020-07-14T12:44:47Z
file_id: '5108'
file_name: IST-2018-1006-v1+1_Pernisova_NewPhytol_2016_peer_review.pdf
file_size: 972763
relation: main_file
file_date_updated: 2020-07-14T12:44:47Z
fulldoi: https://doi.org/10.1111/nph.14049
has_accepted_license: '1'
intvolume: ' 212'
isi: 1
issue: '2'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 497 - 509
publication: New Phytologist
publication_status: published
publisher: Wiley-Blackwell
publist_id: '5839'
pubrep_id: '1006'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cytokinins influence root gravitropism via differential regulation of auxin
transporter expression and localization in Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 212
year: '2016'
...
---
_id: '1373'
article_processing_charge: No
author:
- first_name: Olivier
full_name: Martin, Olivier
last_name: Martin
- first_name: Marcin P
full_name: Zagórski, Marcin P
id: 343DA0DC-F248-11E8-B48F-1D18A9856A87
last_name: Zagórski
orcid: 0000-0001-7896-7762
citation:
ama: 'Martin O, Zagórski MP. Network architectures and operating principles. Reply
to comments on "Drivers of structural features in gene regulatory networks:
From biophysical constraints to biological function" Physics of Life
Reviews. 2016;17:168-171. doi:10.1016/j.plrev.2016.06.006'
apa: 'Martin, O., & Zagórski, M. P. (2016). Network architectures and operating
principles. Reply to comments on "Drivers of structural features in gene
regulatory networks: From biophysical constraints to biological function"
Physics of Life Reviews. Elsevier. https://doi.org/10.1016/j.plrev.2016.06.006'
chicago: 'Martin, Olivier, and Marcin P Zagórski. “Network Architectures and Operating
Principles. Reply to Comments on "Drivers of Structural Features in Gene
Regulatory Networks: From Biophysical Constraints to Biological Function"”
Physics of Life Reviews. Elsevier, 2016. https://doi.org/10.1016/j.plrev.2016.06.006.'
ieee: 'O. Martin and M. P. Zagórski, “Network architectures and operating principles.
Reply to comments on "Drivers of structural features in gene regulatory
networks: From biophysical constraints to biological function",” Physics
of Life Reviews, vol. 17. Elsevier, pp. 168–171, 2016.'
ista: 'Martin O, Zagórski MP. 2016. Network architectures and operating principles.
Reply to comments on "Drivers of structural features in gene regulatory
networks: From biophysical constraints to biological function" Physics
of Life Reviews. 17, 168–171.'
mla: 'Martin, Olivier, and Marcin P. Zagórski. “Network Architectures and Operating
Principles. Reply to Comments on "Drivers of Structural Features in Gene
Regulatory Networks: From Biophysical Constraints to Biological Function"”
Physics of Life Reviews, vol. 17, Elsevier, 2016, pp. 168–71, doi:10.1016/j.plrev.2016.06.006.'
short: O. Martin, M.P. Zagórski, Physics of Life Reviews 17 (2016) 168–171.
corr_author: '1'
date_created: 2018-12-11T11:51:39Z
date_published: 2016-07-01T00:00:00Z
date_updated: 2025-09-22T07:35:28Z
day: '01'
department:
- _id: AnKi
doi: 10.1016/j.plrev.2016.06.006
external_id:
isi:
- '000381544100034'
fulldoi: https://doi.org/10.1016/j.plrev.2016.06.006
intvolume: ' 17'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://hal.archives-ouvertes.fr/hal-01531698
month: '07'
oa: 1
oa_version: Preprint
page: 168 - 171
publication: Physics of Life Reviews
publication_status: published
publisher: Elsevier
publist_id: '5838'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Network architectures and operating principles. Reply to comments on "Drivers
of structural features in gene regulatory networks: From biophysical constraints
to biological function"'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2016'
...