---
_id: '18712'
abstract:
- lang: eng
  text: 'This file contains the code associated with the manuscript ''Effect of assortative
    mating and sexual selection on polygenic barriers to gene flow''. '
acknowledged_ssus:
- _id: ScienComp
article_processing_charge: No
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Himani
  full_name: Sachdeva, Himani
  last_name: Sachdeva
citation:
  ama: Surendranadh P, Sachdeva H. Mathematica notebook and Fortran code for “Effect
    of assortative mating and sexual selection on polygenic barriers to gene flow.”
    2025. doi:<a href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>
  apa: Surendranadh, P., &#38; Sachdeva, H. (2025). Mathematica notebook and Fortran
    code for “Effect of assortative mating and sexual selection on polygenic barriers
    to gene flow.” Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:17344">https://doi.org/10.15479/AT:ISTA:17344</a>
  chicago: Surendranadh, Parvathy, and Himani Sachdeva. “Mathematica Notebook and
    Fortran Code for ‘Effect of Assortative Mating and Sexual Selection on Polygenic
    Barriers to Gene Flow.’” Institute of Science and Technology Austria, 2025. <a
    href="https://doi.org/10.15479/AT:ISTA:17344">https://doi.org/10.15479/AT:ISTA:17344</a>.
  ieee: P. Surendranadh and H. Sachdeva, “Mathematica notebook and Fortran code for
    ‘Effect of assortative mating and sexual selection on polygenic barriers to gene
    flow.’” Institute of Science and Technology Austria, 2025.
  ista: Surendranadh P, Sachdeva H. 2025. Mathematica notebook and Fortran code for
    ‘Effect of assortative mating and sexual selection on polygenic barriers to gene
    flow’, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>.
  mla: Surendranadh, Parvathy, and Himani Sachdeva. <i>Mathematica Notebook and Fortran
    Code for “Effect of Assortative Mating and Sexual Selection on Polygenic Barriers
    to Gene Flow.”</i> Institute of Science and Technology Austria, 2025, doi:<a href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>.
  short: P. Surendranadh, H. Sachdeva, (2025).
corr_author: '1'
date_created: 2025-01-01T15:28:27Z
date_published: 2025-01-07T00:00:00Z
date_updated: 2025-12-30T08:44:12Z
day: '07'
ddc:
- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/AT:ISTA:17344
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oa_version: Published Version
publisher: Institute of Science and Technology Austria
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title: Mathematica notebook and Fortran code for 'Effect of assortative mating and
  sexual selection on polygenic barriers to gene flow'
tmp:
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abstract:
- lang: eng
  text: "Assortative mating and sexual selection are widespread in nature and can
    play an important role in speciation by facilitating the buildup and maintenance
    of reproductive isolation (RI). However, their contribution to genome-wide suppression
    of gene flow during RI is rarely quantified.\r\nHere, we consider a polygenic
    “magic” trait that is divergently selected across two populations connected by
    migration, while also serving as the basis of assortative mating, thus generating
    sexual selection on one or both sexes. We obtain theoretical predictions for divergence
    at\r\nindividual trait loci by assuming that the effect of all other loci on any
    locus can be encapsulated via an effective migration rate, which bears a simple
    relationship to measurable fitness components of migrants and various early-generation
    hybrids. Our analysis clarifies how “tipping\r\npoints” (characterized by an abrupt
    collapse of adaptive divergence) arise, and when assortative mating can shift
    the critical level of migration beyond which divergence collapses. We quantify
    the relative contributions of viability and sexual selection to genome-wide barriers
    to gene\r\nflow and discuss how these depend on existing divergence levels. Our
    results suggest that effective migration rates provide a useful way of understanding
    genomic divergence, even in scenarios involving multiple, interacting mechanisms
    of RI. "
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We thank Nick Barton for useful comments on the manuscript. This
  research was supported by the Scientific Service Units (SSU) of Institute of Science
  and Technology Austria (ISTA) through resources provided by Scientific Computing
  (SciComp).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Himani
  full_name: Sachdeva, Himani
  last_name: Sachdeva
citation:
  ama: Surendranadh P, Sachdeva H. Effect of assortative mating and sexual selection
    on polygenic barriers to gene flow. <i>Evolution</i>. 2025;79(7):1185-1198. doi:<a
    href="https://doi.org/10.1093/evolut/qpaf047">10.1093/evolut/qpaf047</a>
  apa: Surendranadh, P., &#38; Sachdeva, H. (2025). Effect of assortative mating and
    sexual selection on polygenic barriers to gene flow. <i>Evolution</i>. Oxford
    University Press. <a href="https://doi.org/10.1093/evolut/qpaf047">https://doi.org/10.1093/evolut/qpaf047</a>
  chicago: Surendranadh, Parvathy, and Himani Sachdeva. “Effect of Assortative Mating
    and Sexual Selection on Polygenic Barriers to Gene Flow.” <i>Evolution</i>. Oxford
    University Press, 2025. <a href="https://doi.org/10.1093/evolut/qpaf047">https://doi.org/10.1093/evolut/qpaf047</a>.
  ieee: P. Surendranadh and H. Sachdeva, “Effect of assortative mating and sexual
    selection on polygenic barriers to gene flow,” <i>Evolution</i>, vol. 79, no.
    7. Oxford University Press, pp. 1185–1198, 2025.
  ista: Surendranadh P, Sachdeva H. 2025. Effect of assortative mating and sexual
    selection on polygenic barriers to gene flow. Evolution. 79(7), 1185–1198.
  mla: Surendranadh, Parvathy, and Himani Sachdeva. “Effect of Assortative Mating
    and Sexual Selection on Polygenic Barriers to Gene Flow.” <i>Evolution</i>, vol.
    79, no. 7, Oxford University Press, 2025, pp. 1185–98, doi:<a href="https://doi.org/10.1093/evolut/qpaf047">10.1093/evolut/qpaf047</a>.
  short: P. Surendranadh, H. Sachdeva, Evolution 79 (2025) 1185–1198.
corr_author: '1'
date_created: 2025-06-23T13:51:00Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-12-30T08:44:13Z
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publisher: Oxford University Press
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title: Effect of assortative mating and sexual selection on polygenic barriers to
  gene flow
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---
_id: '17344'
abstract:
- lang: eng
  text: 'This file contains the Mathematica notebook associated with the paper Effect
    of assortative mating and sexual selection on polygenic barriers to gene flow.
    It contains the numerical approximations, analyses, and simulations used in the
    study. '
acknowledged_ssus:
- _id: ScienComp
article_processing_charge: No
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Himani
  full_name: Sachdeva, Himani
  last_name: Sachdeva
citation:
  ama: Surendranadh P, Sachdeva H. Mathematica notebook for “Effect of assortative
    mating and sexual selection on polygenic barriers to gene flow.” 2024. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>
  apa: Surendranadh, P., &#38; Sachdeva, H. (2024). Mathematica notebook for “Effect
    of assortative mating and sexual selection on polygenic barriers to gene flow.”
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:17344">https://doi.org/10.15479/AT:ISTA:17344</a>
  chicago: Surendranadh, Parvathy, and Himani Sachdeva. “Mathematica Notebook for
    ‘Effect of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene
    Flow.’” Institute of Science and Technology Austria, 2024. <a href="https://doi.org/10.15479/AT:ISTA:17344">https://doi.org/10.15479/AT:ISTA:17344</a>.
  ieee: P. Surendranadh and H. Sachdeva, “Mathematica notebook for ‘Effect of assortative
    mating and sexual selection on polygenic barriers to gene flow.’” Institute of
    Science and Technology Austria, 2024.
  ista: Surendranadh P, Sachdeva H. 2024. Mathematica notebook for ‘Effect of assortative
    mating and sexual selection on polygenic barriers to gene flow’, Institute of
    Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>.
  mla: Surendranadh, Parvathy, and Himani Sachdeva. <i>Mathematica Notebook for “Effect
    of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene Flow.”</i>
    Institute of Science and Technology Austria, 2024, doi:<a href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>.
  short: P. Surendranadh, H. Sachdeva, (2024).
date_created: 2024-07-29T14:01:43Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-01-14T13:02:59Z
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- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/AT:ISTA:17344
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  date_created: 2024-07-29T13:51:11Z
  date_updated: 2024-07-29T13:51:11Z
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  file_name: Submission.nb
  file_size: 726132
  relation: main_file
  success: 1
file_date_updated: 2024-07-29T13:51:11Z
has_accepted_license: '1'
month: '07'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Mathematica notebook for 'Effect of assortative mating and sexual selection
  on polygenic barriers to gene flow'
tmp:
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year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '18515'
abstract:
- lang: eng
  text: "Understanding the role of evolutionary processes in shaping genetic variation
    has been a\r\nprimary goal in evolutionary genetics. In this regard, a key question
    is how genetically\r\ndistinct populations evolve in the face of gene flow, thereby
    generating genetic and\r\nphenotypic divergence and reproductive isolation (RI).
    This requires quantifying the role\r\nand relative contributions of prezygotic
    and postzygotic isolating mechanisms on the\r\nreduction of gene exchange between
    populations, and identifying regions in the genome\r\nthat mediate RI, which is
    often polygenic. Further, this needs distinguishing neutral and\r\nselected regions
    in the genome, and discerning how selection influences patterns of neutral\r\ndivergence.\r\nPopulation
    structure, defined as any deviation from panmixia, such as geographic distribution,
    movement and mating patterns of individuals, influences how genetic variation
    is\r\nstructured in space and shapes the neutral null model. Availability of large
    scale spatial\r\ngenomic datasets now enables us to detect signatures of population
    structure in genetic\r\ndata and infer population genetic parameters. Such inferences
    are crucial and have wide\r\napplications in biodiversity, conservation genetics,
    population management and medical\r\ngenetics. However, inferences are based on
    assumptions that do not always match the\r\ncomplex reality, thus leading to erroneous
    conclusions. Moreover, the role and interaction\r\nof heterogeneous population
    density and dispersal, which are ubiquitous in nature, has\r\nbeen challenging
    to study owing to their mathematical complexity. In such scenarios,\r\nfeedback
    between theory, data and simulations can prove to be useful.\r\nIn this thesis,
    I examine the effect of population structure on neutral genetic variation\r\nand
    barriers to gene exchange in hybridising populations, thereby bridging together
    the\r\nfields of spatial population genetics and speciation.\r\nDespite being
    a key concept in speciation, reproductive isolation (RI) lacks a quantitative\r\ndefinition
    and has been used and measured differently across different fields. Chapter 2\r\ngives
    a quantitative definition of RI, in terms of the effect of genetic differences
    on gene\r\nflow. We give analytical predictions for RI in a range of scenarios,
    in terms of effective migration rates for discrete populations and barrier strength
    for continuous populations.\r\nIn addition to this, we discuss current measures
    of RI and their limitations, and propose\r\nthe need for new measures that combine
    organismal and genetic perspectives of RI.\r\nIn chapter 3, I examine the combined
    effect of assortative mating, sexual selection\r\nand viability selection on RI.
    For this, we consider a polygenic ‘magic’ trait under a\r\nmainland-island model.
    We obtain novel theoretical predictions for molecular divergence\r\nin terms of
    effective migration rates, which bears a simple relationship to measurable\r\nfitness
    components of migrants and various early generation hybrids. We explore the\r\nconditions
    under which local adaptation can be maintained despite maladaptive gene flow\r\nand
    quantify the relative contributions of viability and sexual selection to genome-wide\r\nbarriers
    to gene flow.\r\nThe next two chapters of the thesis focus on a hybrid zone of
    Antirrhinum majus that\r\nconsist of two subspecies- the magenta flowered A. m.
    pseudomajus and the yellow\r\nflowered A.m. striatum. Previous studies have suggested
    that flower colour is target of\r\npollinator mediated selection and is influenced
    only by few genes. While these regions\r\nshow high genetic differentiation between
    the subspecies, the rest of the genome is seen\r\nto be well mixed. Chapter 4
    examines the effects of heterogeneous population density\r\nand leptokurtic dispersal
    on isolation by distance and the distribution of heterozygosity\r\nby focusing
    on non-flower colour markers.\r\nChapter 5 analyses cline shapes and associations
    among 6 focal flower colour markers to\r\nunderstand how selection and dispersal
    maintain this hybrid zone. We see sharp coincident\r\nstepped clines at all loci
    and positive associations throughout the hybrid zone, contrary to\r\nthe expected
    patterns from diffusive gene flow. With a novel scheme of inferring dispersal\r\ncombined
    with multilocus simulations, we show that stepped clines do not reflect genetic\r\nbarriers
    to gene flow, but are rather a result of long-distance migration. This framework\r\nallows
    us to get realistic estimates gene flow and selection and shows how traditional
    cline\r\nanalysis may lead to inaccurate conclusions when assumptions of the theory
    are not met.\r\nOverall, this thesis investigates how different features of population
    structure leave\r\ndetectable signatures in genetic variation, namely in patterns
    of isolation by distance,\r\nlinkage disequilibrium and genetic divergence. It
    also highlights how effective migration\r\nrates provide useful way of analysing
    polygenic architectures and shed new light into\r\nhybrid zones. In doing so,
    I identify scenarios when simple models become insufficient\r\nand suggest possibe
    directions by combining genetic data with simulations."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "I also acknowledge the funding agencies Marie Curie COFUND Doctoral
  Fellowship,\r\nAustrian Science Fund FWF (grant P32166) and ERC (grant PR1000ERC02)
  for financially\r\nsupporting my research over the years."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
citation:
  ama: Surendranadh P. Effect of population structure on neutral genetic variation
    and barriers to gene exchange. 2024. doi:<a href="https://doi.org/10.15479/at:ista:18515">10.15479/at:ista:18515</a>
  apa: Surendranadh, P. (2024). <i>Effect of population structure on neutral genetic
    variation and barriers to gene exchange</i>. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/at:ista:18515">https://doi.org/10.15479/at:ista:18515</a>
  chicago: Surendranadh, Parvathy. “Effect of Population Structure on Neutral Genetic
    Variation and Barriers to Gene Exchange.” Institute of Science and Technology
    Austria, 2024. <a href="https://doi.org/10.15479/at:ista:18515">https://doi.org/10.15479/at:ista:18515</a>.
  ieee: P. Surendranadh, “Effect of population structure on neutral genetic variation
    and barriers to gene exchange,” Institute of Science and Technology Austria, 2024.
  ista: Surendranadh P. 2024. Effect of population structure on neutral genetic variation
    and barriers to gene exchange. Institute of Science and Technology Austria.
  mla: Surendranadh, Parvathy. <i>Effect of Population Structure on Neutral Genetic
    Variation and Barriers to Gene Exchange</i>. Institute of Science and Technology
    Austria, 2024, doi:<a href="https://doi.org/10.15479/at:ista:18515">10.15479/at:ista:18515</a>.
  short: P. Surendranadh, Effect of Population Structure on Neutral Genetic Variation
    and Barriers to Gene Exchange, Institute of Science and Technology Austria, 2024.
corr_author: '1'
date_created: 2024-11-06T21:25:37Z
date_published: 2024-11-07T00:00:00Z
date_updated: 2026-04-07T12:56:52Z
day: '07'
ddc:
- '576'
degree_awarded: PhD
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/at:ista:18515
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language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '11'
oa: 1
oa_version: Published Version
page: '219'
project:
- _id: 05959E1C-7A3F-11EA-A408-12923DDC885E
  grant_number: P32166
  name: Snapdragon Speciation
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
  grant_number: '101055327'
  name: Understanding the evolution of continuous genomes
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
title: Effect of population structure on neutral genetic variation and barriers to
  gene exchange
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  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
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...
---
_id: '12264'
abstract:
- lang: eng
  text: Reproductive isolation (RI) is a core concept in evolutionary biology. It
    has been the central focus of speciation research since the modern synthesis and
    is the basis by which biological species are defined. Despite this, the term is
    used in seemingly different ways, and attempts to quantify RI have used very different
    approaches. After showing that the field lacks a clear definition of the term,
    we attempt to clarify key issues, including what RI is, how it can be quantified
    in principle, and how it can be measured in practice. Following other definitions
    with a genetic focus, we propose that RI is a quantitative measure of the effect
    that genetic differences between populations have on gene flow. Specifically,
    RI compares the flow of neutral alleles in the presence of these genetic differences
    to the flow without any such differences. RI is thus greater than zero when genetic
    differences between populations reduce the flow of neutral alleles between populations.
    We show how RI can be quantified in a range of scenarios. A key conclusion is
    that RI depends strongly on circumstances—including the spatial, temporal and
    genomic context—making it difficult to compare across systems. After reviewing
    methods for estimating RI from data, we conclude that it is difficult to measure
    in practice. We discuss our findings in light of the goals of speciation research
    and encourage the use of methods for estimating RI that integrate organismal and
    genetic approaches.
acknowledgement: 'We are grateful to the participants of the ESEB satellite symposium
  ‘Understanding reproductive isolation: bridging conceptual barriers in  speciation  research’  in  2021  for  the  interesting  discussions  that  helped  us  clarify  the  thoughts  presented  in  this  article.  We  thank  Roger
  Butlin, Michael Turelli and two anonymous reviewers for their thoughtful comments
  on this manuscript. We are also very grateful to Roger Butlin and the Barton Group
  for the continued conversa-tions about RI. In addition, we thank all participants
  of the speciation survey. Part of this work was funded by the Austrian Science Fund
  FWF (grant P 32166)'
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Westram AM, Stankowski S, Surendranadh P, Barton NH. What is reproductive isolation?
    <i>Journal of Evolutionary Biology</i>. 2022;35(9):1143-1164. doi:<a href="https://doi.org/10.1111/jeb.14005">10.1111/jeb.14005</a>
  apa: Westram, A. M., Stankowski, S., Surendranadh, P., &#38; Barton, N. H. (2022).
    What is reproductive isolation? <i>Journal of Evolutionary Biology</i>. Wiley.
    <a href="https://doi.org/10.1111/jeb.14005">https://doi.org/10.1111/jeb.14005</a>
  chicago: Westram, Anja M, Sean Stankowski, Parvathy Surendranadh, and Nicholas H
    Barton. “What Is Reproductive Isolation?” <i>Journal of Evolutionary Biology</i>.
    Wiley, 2022. <a href="https://doi.org/10.1111/jeb.14005">https://doi.org/10.1111/jeb.14005</a>.
  ieee: A. M. Westram, S. Stankowski, P. Surendranadh, and N. H. Barton, “What is
    reproductive isolation?,” <i>Journal of Evolutionary Biology</i>, vol. 35, no.
    9. Wiley, pp. 1143–1164, 2022.
  ista: Westram AM, Stankowski S, Surendranadh P, Barton NH. 2022. What is reproductive
    isolation? Journal of Evolutionary Biology. 35(9), 1143–1164.
  mla: Westram, Anja M., et al. “What Is Reproductive Isolation?” <i>Journal of Evolutionary
    Biology</i>, vol. 35, no. 9, Wiley, 2022, pp. 1143–64, doi:<a href="https://doi.org/10.1111/jeb.14005">10.1111/jeb.14005</a>.
  short: A.M. Westram, S. Stankowski, P. Surendranadh, N.H. Barton, Journal of Evolutionary
    Biology 35 (2022) 1143–1164.
corr_author: '1'
date_created: 2023-01-16T09:59:24Z
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acknowledgement: We  are  very  grateful  to  the  authors  of  the  commentaries  for  the  interesting
  discussion and to Luke Holman for handling this set of manuscripts. Part of this
  work was funded by the Austrian Science Fund FWF (grant P 32166).
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author:
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  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Sean
  full_name: Stankowski, Sean
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- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Westram AM, Stankowski S, Surendranadh P, Barton NH. Reproductive isolation,
    speciation, and the value of disagreement: A reply to the commentaries on ‘What
    is reproductive isolation?’ <i>Journal of Evolutionary Biology</i>. 2022;35(9):1200-1205.
    doi:<a href="https://doi.org/10.1111/jeb.14082">10.1111/jeb.14082</a>'
  apa: 'Westram, A. M., Stankowski, S., Surendranadh, P., &#38; Barton, N. H. (2022).
    Reproductive isolation, speciation, and the value of disagreement: A reply to
    the commentaries on ‘What is reproductive isolation?’ <i>Journal of Evolutionary
    Biology</i>. Wiley. <a href="https://doi.org/10.1111/jeb.14082">https://doi.org/10.1111/jeb.14082</a>'
  chicago: 'Westram, Anja M, Sean Stankowski, Parvathy Surendranadh, and Nicholas
    H Barton. “Reproductive Isolation, Speciation, and the Value of Disagreement:
    A Reply to the Commentaries on ‘What Is Reproductive Isolation?’” <i>Journal of
    Evolutionary Biology</i>. Wiley, 2022. <a href="https://doi.org/10.1111/jeb.14082">https://doi.org/10.1111/jeb.14082</a>.'
  ieee: 'A. M. Westram, S. Stankowski, P. Surendranadh, and N. H. Barton, “Reproductive
    isolation, speciation, and the value of disagreement: A reply to the commentaries
    on ‘What is reproductive isolation?,’” <i>Journal of Evolutionary Biology</i>,
    vol. 35, no. 9. Wiley, pp. 1200–1205, 2022.'
  ista: 'Westram AM, Stankowski S, Surendranadh P, Barton NH. 2022. Reproductive isolation,
    speciation, and the value of disagreement: A reply to the commentaries on ‘What
    is reproductive isolation?’ Journal of Evolutionary Biology. 35(9), 1200–1205.'
  mla: 'Westram, Anja M., et al. “Reproductive Isolation, Speciation, and the Value
    of Disagreement: A Reply to the Commentaries on ‘What Is Reproductive Isolation?’”
    <i>Journal of Evolutionary Biology</i>, vol. 35, no. 9, Wiley, 2022, pp. 1200–05,
    doi:<a href="https://doi.org/10.1111/jeb.14082">10.1111/jeb.14082</a>.'
  short: A.M. Westram, S. Stankowski, P. Surendranadh, N.H. Barton, Journal of Evolutionary
    Biology 35 (2022) 1200–1205.
corr_author: '1'
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abstract:
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  text: 'Here are the research data underlying the publication "Effects of fine-scale
    population structure on the distribution of heterozygosity in a long-term study
    of Antirrhinum majus" Further information are summed up in the README document. '
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author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Louise S
  full_name: Arathoon, Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
  orcid: 0000-0003-1771-714X
- first_name: Carina
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  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
- first_name: David
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  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects
    of fine-scale population structure on the distribution of heterozygosity in a
    long-term study of Antirrhinum majus. 2022. doi:<a href="https://doi.org/10.15479/at:ista:11321">10.15479/at:ista:11321</a>
  apa: Surendranadh, P., Arathoon, L. S., Baskett, C., Field, D., Pickup, M., &#38;
    Barton, N. H. (2022). Effects of fine-scale population structure on the distribution
    of heterozygosity in a long-term study of Antirrhinum majus. Institute of Science
    and Technology Austria. <a href="https://doi.org/10.15479/at:ista:11321">https://doi.org/10.15479/at:ista:11321</a>
  chicago: Surendranadh, Parvathy, Louise S Arathoon, Carina Baskett, David Field,
    Melinda Pickup, and Nicholas H Barton. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    Institute of Science and Technology Austria, 2022. <a href="https://doi.org/10.15479/at:ista:11321">https://doi.org/10.15479/at:ista:11321</a>.
  ieee: P. Surendranadh, L. S. Arathoon, C. Baskett, D. Field, M. Pickup, and N. H.
    Barton, “Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus.” Institute of Science and Technology
    Austria, 2022.
  ista: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. 2022.
    Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus, Institute of Science and Technology
    Austria, <a href="https://doi.org/10.15479/at:ista:11321">10.15479/at:ista:11321</a>.
  mla: Surendranadh, Parvathy, et al. <i>Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus</i>.
    Institute of Science and Technology Austria, 2022, doi:<a href="https://doi.org/10.15479/at:ista:11321">10.15479/at:ista:11321</a>.
  short: P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton,
    (2022).
contributor:
- contributor_type: project_member
  first_name: Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
- contributor_type: project_member
  first_name: Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
- contributor_type: project_member
  first_name: David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- contributor_type: project_member
  first_name: Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- contributor_type: project_member
  first_name: Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
corr_author: '1'
date_created: 2022-04-22T09:42:24Z
date_published: 2022-04-28T00:00:00Z
date_updated: 2025-04-15T08:20:40Z
day: '28'
ddc:
- '570'
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/at:ista:11321
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month: '04'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
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title: Effects of fine-scale population structure on the distribution of heterozygosity
  in a long-term study of Antirrhinum majus
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abstract:
- lang: eng
  text: Many studies have quantified the distribution of heterozygosity and relatedness
    in natural populations, but few have examined the demographic processes driving
    these patterns. In this study, we take a novel approach by studying how population
    structure affects both pairwise identity and the distribution of heterozygosity
    in a natural population of the self-incompatible plant Antirrhinum majus. Excess
    variance in heterozygosity between individuals is due to identity disequilibrium,
    which reflects the variance in inbreeding between individuals; it is measured
    by the statistic g2. We calculated g2 together with FST and pairwise relatedness
    (Fij) using 91 SNPs in 22,353 individuals collected over 11 years. We find that
    pairwise Fij declines rapidly over short spatial scales, and the excess variance
    in heterozygosity between individuals reflects significant variation in inbreeding.
    Additionally, we detect an excess of individuals with around half the average
    heterozygosity, indicating either selfing or matings between close relatives.
    We use 2 types of simulation to ask whether variation in heterozygosity is consistent
    with fine-scale spatial population structure. First, by simulating offspring using
    parents drawn from a range of spatial scales, we show that the known pollen dispersal
    kernel explains g2. Second, we simulate a 1,000-generation pedigree using the
    known dispersal and spatial distribution and find that the resulting g2 is consistent
    with that observed from the field data. In contrast, a simulated population with
    uniform density underestimates g2, indicating that heterogeneous density promotes
    identity disequilibrium. Our study shows that heterogeneous density and leptokurtic
    dispersal can together explain the distribution of heterozygosity.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "Part of this work was funded by Marie Curie COFUND Doctoral Fellowship
  and Austrian Science Fund FWF (grant P32166).\r\nWe thank the many volunteers and
  friends who have contributed to data collection in the field site over the years,
  in particular those who have managed field seasons: Barbora Trubenova, Maria Clara
  Melo, Tom Ellis, Eva Cereghetti, Lenka Matejovicova, Beatriz Pablo Carmona. Frederic
  Ferrer and Eva Salmerón Mateu have been immensely helpful with logistics at our
  informal field station, El Serrat de Planoles. We thank Sean Stankowski for technical
  help in\r\nproducing figure 1. This research was also supported by the Scientific
  Service Units (SSU) of IST Austria through resources provided by Scientific Computing
  (SciComp)."
article_number: iyac083
article_processing_charge: No
article_type: original
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Louise S
  full_name: Arathoon, Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
  orcid: 0000-0003-1771-714X
- first_name: Carina
  full_name: Baskett, Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects
    of fine-scale population structure on the distribution of heterozygosity in a
    long-term study of Antirrhinum majus. <i>Genetics</i>. 2022;221(3). doi:<a href="https://doi.org/10.1093/genetics/iyac083">10.1093/genetics/iyac083</a>
  apa: Surendranadh, P., Arathoon, L. S., Baskett, C., Field, D., Pickup, M., &#38;
    Barton, N. H. (2022). Effects of fine-scale population structure on the distribution
    of heterozygosity in a long-term study of Antirrhinum majus. <i>Genetics</i>.
    Oxford University Press. <a href="https://doi.org/10.1093/genetics/iyac083">https://doi.org/10.1093/genetics/iyac083</a>
  chicago: Surendranadh, Parvathy, Louise S Arathoon, Carina Baskett, David Field,
    Melinda Pickup, and Nicholas H Barton. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    <i>Genetics</i>. Oxford University Press, 2022. <a href="https://doi.org/10.1093/genetics/iyac083">https://doi.org/10.1093/genetics/iyac083</a>.
  ieee: P. Surendranadh, L. S. Arathoon, C. Baskett, D. Field, M. Pickup, and N. H.
    Barton, “Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus,” <i>Genetics</i>, vol. 221, no. 3.
    Oxford University Press, 2022.
  ista: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. 2022.
    Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus. Genetics. 221(3), iyac083.
  mla: Surendranadh, Parvathy, et al. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    <i>Genetics</i>, vol. 221, no. 3, iyac083, Oxford University Press, 2022, doi:<a
    href="https://doi.org/10.1093/genetics/iyac083">10.1093/genetics/iyac083</a>.
  short: P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton,
    Genetics 221 (2022).
corr_author: '1'
date_created: 2022-05-26T13:44:50Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2026-04-07T13:28:29Z
day: '01'
ddc:
- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.1093/genetics/iyac083
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month: '07'
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oa_version: Submitted Version
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project:
- _id: 05959E1C-7A3F-11EA-A408-12923DDC885E
  grant_number: P32166
  name: Snapdragon Speciation
publication: Genetics
publication_identifier:
  eissn:
  - 1943-2631
publication_status: published
publisher: Oxford University Press
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status: public
title: Effects of fine-scale population structure on the distribution of heterozygosity
  in a long-term study of Antirrhinum majus
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 221
year: '2022'
...
---
_id: '9192'
abstract:
- lang: eng
  text: Here are the research data underlying the publication " Effects of fine-scale
    population structure on inbreeding in a long-term study of snapdragons (Antirrhinum
    majus)." Further information are summed up in the README document.
article_processing_charge: No
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Louise S
  full_name: Arathoon, Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
  orcid: 0000-0003-1771-714X
- first_name: Carina
  full_name: Baskett, Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects
    of fine-scale population structure on the distribution of heterozygosity in a
    long-term study of Antirrhinum majus. 2021. doi:<a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>
  apa: Surendranadh, P., Arathoon, L. S., Baskett, C., Field, D., Pickup, M., &#38;
    Barton, N. H. (2021). Effects of fine-scale population structure on the distribution
    of heterozygosity in a long-term study of Antirrhinum majus. Institute of Science
    and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:9192">https://doi.org/10.15479/AT:ISTA:9192</a>
  chicago: Surendranadh, Parvathy, Louise S Arathoon, Carina Baskett, David Field,
    Melinda Pickup, and Nicholas H Barton. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    Institute of Science and Technology Austria, 2021. <a href="https://doi.org/10.15479/AT:ISTA:9192">https://doi.org/10.15479/AT:ISTA:9192</a>.
  ieee: P. Surendranadh, L. S. Arathoon, C. Baskett, D. Field, M. Pickup, and N. H.
    Barton, “Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus.” Institute of Science and Technology
    Austria, 2021.
  ista: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. 2021.
    Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus, Institute of Science and Technology
    Austria, <a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>.
  mla: Surendranadh, Parvathy, et al. <i>Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus</i>.
    Institute of Science and Technology Austria, 2021, doi:<a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>.
  short: P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton,
    (2021).
contributor:
- contributor_type: project_member
  first_name: Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
- contributor_type: project_member
  first_name: Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
- contributor_type: project_member
  first_name: Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
- contributor_type: project_member
  first_name: David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- contributor_type: project_member
  first_name: Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- contributor_type: project_leader
  first_name: Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
date_created: 2021-02-24T17:49:21Z
date_published: 2021-02-26T00:00:00Z
date_updated: 2025-04-15T08:20:40Z
day: '26'
ddc:
- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/AT:ISTA:9192
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  creator: larathoo
  date_created: 2021-02-24T17:45:13Z
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file_date_updated: 2021-02-24T17:45:13Z
has_accepted_license: '1'
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
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status: public
title: Effects of fine-scale population structure on the distribution of heterozygosity
  in a long-term study of Antirrhinum majus
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
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type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
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