--- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '20328' abstract: - lang: eng text: We consider the standard overlap (math formular) of any bi-orthogonal family of left and right eigenvectors of a large random matrix X with centred i.i.d. entries and we prove that it decays as an inverse second power of the distance between the corresponding eigenvalues. This extends similar results for the complex Gaussian ensemble from Bourgade and Dubach [15], as well as Benaych-Georges and Zeitouni [13], to any i.i.d. matrix ensemble in both symmetry classes. As a main tool, we prove a two-resolvent local law for the Hermitisation of X uniformly in the spectrum with optimal decay rate and optimal dependence on the density near the spectral edge. acknowledgement: Partially supported by ERC Advanced Grant “RMTBeyond” No. 101020331. Partially supported by National Key R&D Program of China No. 2024YFA1013503. article_number: '111180' article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Giorgio full_name: Cipolloni, Giorgio id: 42198EFA-F248-11E8-B48F-1D18A9856A87 last_name: Cipolloni orcid: 0000-0002-4901-7992 - first_name: László full_name: Erdös, László id: 4DBD5372-F248-11E8-B48F-1D18A9856A87 last_name: Erdös orcid: 0000-0001-5366-9603 - first_name: Yuanyuan full_name: Xu, Yuanyuan id: 7902bdb1-a2a4-11eb-a164-c9216f71aea3 last_name: Xu orcid: 0000-0003-1559-1205 citation: ama: Cipolloni G, Erdös L, Xu Y. Optimal decay of eigenvector overlap for non-Hermitian random matrices. Journal of Functional Analysis. 2026;290(1). doi:10.1016/j.jfa.2025.111180 apa: Cipolloni, G., Erdös, L., & Xu, Y. (2026). Optimal decay of eigenvector overlap for non-Hermitian random matrices. Journal of Functional Analysis. Elsevier. https://doi.org/10.1016/j.jfa.2025.111180 chicago: Cipolloni, Giorgio, László Erdös, and Yuanyuan Xu. “Optimal Decay of Eigenvector Overlap for Non-Hermitian Random Matrices.” Journal of Functional Analysis. Elsevier, 2026. https://doi.org/10.1016/j.jfa.2025.111180. ieee: G. Cipolloni, L. Erdös, and Y. Xu, “Optimal decay of eigenvector overlap for non-Hermitian random matrices,” Journal of Functional Analysis, vol. 290, no. 1. Elsevier, 2026. ista: Cipolloni G, Erdös L, Xu Y. 2026. Optimal decay of eigenvector overlap for non-Hermitian random matrices. Journal of Functional Analysis. 290(1), 111180. mla: Cipolloni, Giorgio, et al. “Optimal Decay of Eigenvector Overlap for Non-Hermitian Random Matrices.” Journal of Functional Analysis, vol. 290, no. 1, 111180, Elsevier, 2026, doi:10.1016/j.jfa.2025.111180. short: G. Cipolloni, L. Erdös, Y. Xu, Journal of Functional Analysis 290 (2026). corr_author: '1' date_created: 2025-09-10T05:46:07Z date_published: 2026-01-01T00:00:00Z date_updated: 2026-01-05T13:05:52Z day: '01' ddc: - '510' department: - _id: LaEr doi: 10.1016/j.jfa.2025.111180 ec_funded: 1 external_id: arxiv: - '2411.16572' isi: - '001583178200001' file: - access_level: open_access checksum: ee53d5e695f0df11e017c8c9242a2b04 content_type: application/pdf creator: dernst date_created: 2026-01-05T13:05:47Z date_updated: 2026-01-05T13:05:47Z file_id: '20947' file_name: 2026_JourFuncAnalysis_Cipolloni.pdf file_size: 2503887 relation: main_file success: 1 file_date_updated: 2026-01-05T13:05:47Z has_accepted_license: '1' intvolume: ' 290' isi: 1 issue: '1' language: - iso: eng month: '01' oa: 1 oa_version: Published Version project: - _id: 62796744-2b32-11ec-9570-940b20777f1d call_identifier: H2020 grant_number: '101020331' name: Random matrices beyond Wigner-Dyson-Mehta publication: Journal of Functional Analysis publication_identifier: issn: - 0022-1236 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Optimal decay of eigenvector overlap for non-Hermitian random matrices tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 290 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '20456' abstract: - lang: eng text: Given a locally finite set A⊆Rd and a coloring χ:A→{0,1,…,s}, we introduce the chromatic Delaunay mosaic of χ, which is a Delaunay mosaic in Rs+d that represents how points of different colors mingle. Our main results are bounds on the size of the chromatic Delaunay mosaic, in which we assume that d and s are constants. For example, if A is finite with n=#A, and the coloring is random, then the chromatic Delaunay mosaic has O(n⌈d/2⌉) cells in expectation. In contrast, for Delone sets and Poisson point processes in Rd, the expected number of cells within a closed ball is only a constant times the number of points in this ball. Furthermore, in R2 all colorings of a dense set of n points have chromatic Delaunay mosaics of size O(n). This encourages the use of chromatic Delaunay mosaics in applications. acknowledgement: The fourth author thanks Boris Aronov for insightful discussions on the size of the overlay of Voronoi tessellations. Open access funding provided by Institute of Science and Technology (IST Austria). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme, grant no. 788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), grant no. Z 342-N31, and from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35. article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Ranita full_name: Biswas, Ranita id: 3C2B033E-F248-11E8-B48F-1D18A9856A87 last_name: Biswas orcid: 0000-0002-5372-7890 - first_name: Sebastiano full_name: Cultrera di Montesano, Sebastiano id: 34D2A09C-F248-11E8-B48F-1D18A9856A87 last_name: Cultrera di Montesano orcid: 0000-0001-6249-0832 - first_name: Ondrej full_name: Draganov, Ondrej id: 2B23F01E-F248-11E8-B48F-1D18A9856A87 last_name: Draganov orcid: 0000-0003-0464-3823 - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Morteza full_name: Saghafian, Morteza id: f86f7148-b140-11ec-9577-95435b8df824 last_name: Saghafian citation: ama: Biswas R, Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. On the size of chromatic Delaunay mosaics. Discrete and Computational Geometry. 2026;75:24-47. doi:10.1007/s00454-025-00778-7 apa: Biswas, R., Cultrera di Montesano, S., Draganov, O., Edelsbrunner, H., & Saghafian, M. (2026). On the size of chromatic Delaunay mosaics. Discrete and Computational Geometry. Springer Nature. https://doi.org/10.1007/s00454-025-00778-7 chicago: Biswas, Ranita, Sebastiano Cultrera di Montesano, Ondrej Draganov, Herbert Edelsbrunner, and Morteza Saghafian. “On the Size of Chromatic Delaunay Mosaics.” Discrete and Computational Geometry. Springer Nature, 2026. https://doi.org/10.1007/s00454-025-00778-7. ieee: R. Biswas, S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, and M. Saghafian, “On the size of chromatic Delaunay mosaics,” Discrete and Computational Geometry, vol. 75. Springer Nature, pp. 24–47, 2026. ista: Biswas R, Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. 2026. On the size of chromatic Delaunay mosaics. Discrete and Computational Geometry. 75, 24–47. mla: Biswas, Ranita, et al. “On the Size of Chromatic Delaunay Mosaics.” Discrete and Computational Geometry, vol. 75, Springer Nature, 2026, pp. 24–47, doi:10.1007/s00454-025-00778-7. short: R. Biswas, S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, M. Saghafian, Discrete and Computational Geometry 75 (2026) 24–47. corr_author: '1' date_created: 2025-10-12T22:01:26Z date_published: 2026-01-01T00:00:00Z date_updated: 2026-01-05T13:21:56Z day: '01' ddc: - '510' department: - _id: HeEd doi: 10.1007/s00454-025-00778-7 ec_funded: 1 external_id: arxiv: - '2212.03121' isi: - '001584166900001' file: - access_level: open_access checksum: 0addb5c1b78142f9fb453bfa04695400 content_type: application/pdf creator: dernst date_created: 2026-01-05T13:21:20Z date_updated: 2026-01-05T13:21:20Z file_id: '20952' file_name: 2026_DiscreteCompGeom_Biswas.pdf file_size: 570922 relation: main_file success: 1 file_date_updated: 2026-01-05T13:21:20Z has_accepted_license: '1' intvolume: ' 75' isi: 1 language: - iso: eng month: '01' oa: 1 oa_version: Published Version page: 24-47 project: - _id: 266A2E9E-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '788183' name: Alpha Shape Theory Extended - _id: 268116B8-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: Z00342 name: Mathematics, Computer Science - _id: 2561EBF4-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: I02979-N35 name: Persistence and stability of geometric complexes publication: Discrete and Computational Geometry publication_identifier: eissn: - 1432-0444 issn: - 0179-5376 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: record: - id: '15090' relation: earlier_version status: public scopus_import: '1' status: public title: On the size of chromatic Delaunay mosaics tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 75 year: '2026' ... --- _id: '20833' abstract: - lang: eng text: Sex-chromosome systems are highly variable across animals, but how they transition from one to another is not well understood. Diptera have undergone multiple sex-chromosome turnovers and expansions while maintaining their general chromosomal content, which makes them an ideal clade to study such transitions. We analysed more than 100 dipteran whole-genome assemblies and identified 4 new lineages that underwent sex-chromosome turnover (in addition to the 5 previously reported). We find the majority of turnovers happened in the group Schizophora, which tend to have fewer genes on the F element (the chromosome homologous to the ancestral insect X chromosome) than lower dipterans, a factor previously hypothesized to facilitate turnover. Most derived X chromosomes have higher GC content than autosomes, consistent with a high prevalence of male-achiasmy in Diptera. In addition, an excess of gene movement out of the X is detected for most of these new X chromosomes, and many of these moved genes have high testis expression in Drosophila, suggesting that out-of-X gene movement contributes to the long-term demasculinization of X chromosomes. article_processing_charge: No author: - first_name: Lorena Alexandra full_name: Layana Franco, Lorena Alexandra id: 02814589-eb8f-11eb-b029-a70074f3f18f last_name: Layana Franco orcid: 0000-0002-1253-6297 - first_name: Melissa A full_name: Toups, Melissa A id: 4E099E4E-F248-11E8-B48F-1D18A9856A87 last_name: Toups orcid: 0000-0002-9752-7380 - first_name: Beatriz full_name: Vicoso, Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 citation: ama: Layana Franco LA, Toups MA, Vicoso B. Research Data for “Causes and consequences of sex-chromosome turnovers in Diptera.” 2026. doi:10.15479/AT-ISTA-20833 apa: Layana Franco, L. A., Toups, M. A., & Vicoso, B. (2026). Research Data for “Causes and consequences of sex-chromosome turnovers in Diptera.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-20833 chicago: Layana Franco, Lorena Alexandra, Melissa A Toups, and Beatriz Vicoso. “Research Data for ‘Causes and Consequences of Sex-Chromosome Turnovers in Diptera.’” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-20833. ieee: L. A. Layana Franco, M. A. Toups, and B. Vicoso, “Research Data for ‘Causes and consequences of sex-chromosome turnovers in Diptera.’” Institute of Science and Technology Austria, 2026. ista: Layana Franco LA, Toups MA, Vicoso B. 2026. Research Data for ‘Causes and consequences of sex-chromosome turnovers in Diptera’, Institute of Science and Technology Austria, 10.15479/AT-ISTA-20833. mla: Layana Franco, Lorena Alexandra, et al. Research Data for “Causes and Consequences of Sex-Chromosome Turnovers in Diptera.” Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-20833. short: L.A. Layana Franco, M.A. Toups, B. Vicoso, (2026). corr_author: '1' date_created: 2025-12-17T10:10:57Z date_published: 2026-01-08T00:00:00Z date_updated: 2026-01-08T13:49:40Z day: '8' department: - _id: BeVi doi: 10.15479/AT-ISTA-20833 file: - access_level: open_access checksum: 0b79be6229f2ad9ac117ef00fc4f5c0e content_type: text/plain creator: llayanaf date_created: 2025-12-17T10:09:25Z date_updated: 2025-12-17T10:09:25Z file_id: '20834' file_name: README.txt file_size: 1201 relation: main_file success: 1 - access_level: open_access checksum: daf1c03149dd170b14e5c8e109ee3c77 content_type: application/zip creator: llayanaf date_created: 2025-12-17T10:10:11Z date_updated: 2025-12-17T10:10:11Z file_id: '20835' file_name: Supplementary_Datasets.zip file_size: 19052849 relation: main_file success: 1 - access_level: open_access checksum: 251e7aab01917c2ad2fbccf465492ea1 content_type: application/zip creator: llayanaf date_created: 2025-12-17T10:12:05Z date_updated: 2025-12-17T10:12:05Z file_id: '20837' file_name: Perl_scripts.zip file_size: 4575 relation: main_file success: 1 - access_level: open_access checksum: 3cabf143b8cd286eae48c598da2b03bd content_type: application/zip creator: llayanaf date_created: 2026-01-08T01:35:08Z date_updated: 2026-01-08T01:35:08Z file_id: '20959' file_name: Supplementary_Tables.zip file_size: 572362 relation: main_file success: 1 file_date_updated: 2026-01-08T01:35:08Z has_accepted_license: '1' keyword: - Schizophora - sex chromosomes - sex-chromosome turnover - Diptera - genomic features - out-of-X movement. month: '01' oa: 1 oa_version: None publisher: Institute of Science and Technology Austria status: public title: Research Data for 'Causes and consequences of sex-chromosome turnovers in Diptera' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d year: '2026' ... --- OA_type: closed access _id: '21001' abstract: - lang: eng text: Copper chalcogenides offer high charge mobility and low lattice thermal conductivity but suffer from structural instability due to dynamic Cu+ migration. Here, we report a colloidal hot-injection synthesis of ternary cesium copper selenide (CsCu5Se3) nanocrystals (NCs), achieving precise control over phase, size, and morphology through tailored precursor-ligand modulation. This strategy enabled systematic exploration of stable and metastable Cs–Cu–Se phases and mechanistic investigation of nucleation and growth, providing insight into phase modulation and dimensional control at the nanoscale. CsCu5Se3 NCs exhibit low lattice thermal conductivity (∼0.5 Wm–1K–1) and an experimental zT of 0.27 at 718 K. Complementary first-principles calculations, consistent with experimental electronic and optical responses, predict a zT of 1.05 at 1000 K. These findings elucidate the formation dynamics of CsCu5Se3 and establish ABZ (A = alkali, B = metal, Z = chalcogen) NCs as tunable platforms for advanced functional applications. acknowledgement: This publication has emanated from research conducted with the financial support of Taighde Éireann-Research Ireland under Grant number 22/FFP-P/11591. C.F. and M.I. would like to acknowledge the financial support of ISTA and the Werner Siemens Foundation. N.N.P. acknowledges the financial support of AMBER under grant number 12/rc/2278_p2. article_processing_charge: No article_type: letter_note author: - first_name: Niraj Nitish full_name: Patil, Niraj Nitish last_name: Patil - first_name: Ruiqi full_name: Wu, Ruiqi last_name: Wu - first_name: Christine full_name: Fiedler, Christine id: bd3fceba-dc74-11ea-a0a7-c17f71817366 last_name: Fiedler - first_name: Nilotpal full_name: Kapuria, Nilotpal last_name: Kapuria - first_name: Bingfei full_name: Nan, Bingfei last_name: 'Nan' - first_name: Navita full_name: Navita, Navita id: 6ebe278d-ba0b-11ee-8184-f34cdc671de4 last_name: Navita orcid: 0000-0001-7408-8197 - first_name: Andreu full_name: Cabot, Andreu last_name: Cabot - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 - first_name: Kevin M. full_name: Ryan, Kevin M. last_name: Ryan - first_name: Alex M. full_name: Ganose, Alex M. last_name: Ganose - first_name: Shalini full_name: Singh, Shalini last_name: Singh citation: ama: 'Patil NN, Wu R, Fiedler C, et al. Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3. ACS Energy Letters. 2026;11(1):481-488. doi:10.1021/acsenergylett.5c02909' apa: 'Patil, N. N., Wu, R., Fiedler, C., Kapuria, N., Nan, B., Jakhar, N., … Singh, S. (2026). Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3. ACS Energy Letters. American Chemical Society. https://doi.org/10.1021/acsenergylett.5c02909' chicago: 'Patil, Niraj Nitish, Ruiqi Wu, Christine Fiedler, Nilotpal Kapuria, Bingfei Nan, Navita Jakhar, Andreu Cabot, et al. “Layered Alkali-Copper Selenides: Deciphering Thermoelectric Properties and Reaction Pathways for Nanostructuring β-CsCu5Se3.” ACS Energy Letters. American Chemical Society, 2026. https://doi.org/10.1021/acsenergylett.5c02909.' ieee: 'N. N. Patil et al., “Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3,” ACS Energy Letters, vol. 11, no. 1. American Chemical Society, pp. 481–488, 2026.' ista: 'Patil NN, Wu R, Fiedler C, Kapuria N, Nan B, Jakhar N, Cabot A, Ibáñez M, Ryan KM, Ganose AM, Singh S. 2026. Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3. ACS Energy Letters. 11(1), 481–488.' mla: 'Patil, Niraj Nitish, et al. “Layered Alkali-Copper Selenides: Deciphering Thermoelectric Properties and Reaction Pathways for Nanostructuring β-CsCu5Se3.” ACS Energy Letters, vol. 11, no. 1, American Chemical Society, 2026, pp. 481–88, doi:10.1021/acsenergylett.5c02909.' short: N.N. Patil, R. Wu, C. Fiedler, N. Kapuria, B. Nan, N. Jakhar, A. Cabot, M. Ibáñez, K.M. Ryan, A.M. Ganose, S. Singh, ACS Energy Letters 11 (2026) 481–488. date_created: 2026-01-18T23:02:43Z date_published: 2026-01-09T00:00:00Z date_updated: 2026-01-19T08:43:21Z day: '09' department: - _id: MaIb - _id: GradSch doi: 10.1021/acsenergylett.5c02909 intvolume: ' 11' issue: '1' language: - iso: eng month: '01' oa_version: None page: 481-488 project: - _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery' publication: ACS Energy Letters publication_identifier: eissn: - 2380-8195 publication_status: published publisher: American Chemical Society quality_controlled: '1' scopus_import: '1' status: public title: 'Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 11 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '21002' abstract: - lang: eng text: The Davenport–Heilbronn method is a version of the circle method that was developed for studying Diophantine inequalities in the paper (Davenport and Heilbronn, J. Lond. Math. Soc. (1) 21 (1946), 185–193). We discuss the main ideas in the paper, together with an account of the development of the subject in the intervening 80 years. acknowledgement: "The author is very grateful to Jörg Brüdern, Simon Rydin Myerson and Trevor Wooley for their help and advice with preparing this survey, in addition to Vinay Kumaraswamy, Victor Wang and the anonymous referee for useful comments on an earlier draft. This work was supported by a FWF Grant (DOI 10.55776/P36278).\r\nOpen Access funding provided by Institute of Science and Technology Austria/KEMÖ." article_number: e70371 article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Timothy D full_name: Browning, Timothy D id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 citation: ama: 'Browning TD. The Davenport–Heilbronn method: 80 years on. Journal of the London Mathematical Society. 2026;113(1). doi:10.1112/jlms.70371' apa: 'Browning, T. D. (2026). The Davenport–Heilbronn method: 80 years on. Journal of the London Mathematical Society. Wiley. https://doi.org/10.1112/jlms.70371' chicago: 'Browning, Timothy D. “The Davenport–Heilbronn Method: 80 Years On.” Journal of the London Mathematical Society. Wiley, 2026. https://doi.org/10.1112/jlms.70371.' ieee: 'T. D. Browning, “The Davenport–Heilbronn method: 80 years on,” Journal of the London Mathematical Society, vol. 113, no. 1. Wiley, 2026.' ista: 'Browning TD. 2026. The Davenport–Heilbronn method: 80 years on. Journal of the London Mathematical Society. 113(1), e70371.' mla: 'Browning, Timothy D. “The Davenport–Heilbronn Method: 80 Years On.” Journal of the London Mathematical Society, vol. 113, no. 1, e70371, Wiley, 2026, doi:10.1112/jlms.70371.' short: T.D. Browning, Journal of the London Mathematical Society 113 (2026). corr_author: '1' date_created: 2026-01-18T23:02:44Z date_published: 2026-01-06T00:00:00Z date_updated: 2026-01-19T08:23:15Z day: '06' ddc: - '510' department: - _id: TiBr doi: 10.1112/jlms.70371 file: - access_level: open_access checksum: 3b05bd625c81d038259a14f7e2ddd57c content_type: application/pdf creator: dernst date_created: 2026-01-19T08:19:46Z date_updated: 2026-01-19T08:19:46Z file_id: '21004' file_name: 2026_JourLondonMathSoc_Browning.pdf file_size: 235238 relation: main_file success: 1 file_date_updated: 2026-01-19T08:19:46Z has_accepted_license: '1' intvolume: ' 113' issue: '1' language: - iso: eng month: '01' oa: 1 oa_version: Published Version project: - _id: bd8a4fdc-d553-11ed-ba76-80a0167441a3 grant_number: P36278 name: Rational curves via function field analytic number theory publication: Journal of the London Mathematical Society publication_identifier: eissn: - 1469-7750 issn: - 0024-6107 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: 'The Davenport–Heilbronn method: 80 years on' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 113 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '21012' abstract: - lang: eng text: In certifiable machine learning, AI systems produce not only results but also verifiable certificates that the results can be trusted. acknowledgement: T.A.H. thanks Đorde Žikelic for many stimulating discussions about CML. This work was supported in part by NSFCPS Frontier Grant 1545126, by a BAIR Commons project, by the Berkeley iCy-Phy Center, by the Stanford Center for Automated Reasoning, and by the ERC Advanced Grant 101020093. article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Clark full_name: Barrett, Clark last_name: Barrett - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000-0002-2985-7724 - first_name: Sanjit A. full_name: Seshia, Sanjit A. last_name: Seshia citation: ama: 'Barrett C, Henzinger TA, Seshia SA. Certificates in AI: Learn but verify. Communications of the ACM. 2026;69(1):66-75. doi:10.1145/3737447' apa: 'Barrett, C., Henzinger, T. A., & Seshia, S. A. (2026). Certificates in AI: Learn but verify. Communications of the ACM. Association for Computing Machinery. https://doi.org/10.1145/3737447' chicago: 'Barrett, Clark, Thomas A Henzinger, and Sanjit A. Seshia. “Certificates in AI: Learn but Verify.” Communications of the ACM. Association for Computing Machinery, 2026. https://doi.org/10.1145/3737447.' ieee: 'C. Barrett, T. A. Henzinger, and S. A. Seshia, “Certificates in AI: Learn but verify,” Communications of the ACM, vol. 69, no. 1. Association for Computing Machinery, pp. 66–75, 2026.' ista: 'Barrett C, Henzinger TA, Seshia SA. 2026. Certificates in AI: Learn but verify. Communications of the ACM. 69(1), 66–75.' mla: 'Barrett, Clark, et al. “Certificates in AI: Learn but Verify.” Communications of the ACM, vol. 69, no. 1, Association for Computing Machinery, 2026, pp. 66–75, doi:10.1145/3737447.' short: C. Barrett, T.A. Henzinger, S.A. Seshia, Communications of the ACM 69 (2026) 66–75. corr_author: '1' date_created: 2026-01-20T10:08:21Z date_published: 2026-01-01T00:00:00Z date_updated: 2026-01-21T08:55:24Z day: '01' ddc: - '000' department: - _id: ToHe doi: 10.1145/3737447 ec_funded: 1 file: - access_level: open_access checksum: d909a9091c254b2d18ba014124663f69 content_type: application/pdf creator: dernst date_created: 2026-01-21T08:52:07Z date_updated: 2026-01-21T08:52:07Z file_id: '21028' file_name: 2026_CommACM_Barrett.pdf file_size: 2623108 relation: main_file success: 1 file_date_updated: 2026-01-21T08:52:07Z has_accepted_license: '1' intvolume: ' 69' issue: '1' language: - iso: eng month: '01' oa: 1 oa_version: Published Version page: 66-75 project: - _id: 62781420-2b32-11ec-9570-8d9b63373d4d call_identifier: H2020 grant_number: '101020093' name: Vigilant Algorithmic Monitoring of Software publication: Communications of the ACM publication_identifier: eissn: - 1557-7317 issn: - 0001-0782 publication_status: published publisher: Association for Computing Machinery quality_controlled: '1' scopus_import: '1' status: public title: 'Certificates in AI: Learn but verify' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 69 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '21037' abstract: - lang: eng text: The oxygen reduction reaction (ORR) remains a critical bottleneck in fuel cells and metal-air batteries due to the lack of highly efficient electrocatalysts. Here, we report a simple strategy for synthesizing a palladium-based heterostructured electrocatalyst supported on a carbon nitride matrix (PdH-Pd@CN), which exhibits remarkable ORR activity with a half-wave potential of 0.91 V and excellent durability in 0.1 M KOH. Within the heterostructure, hydrogen intercalation expands the Pd lattice, while interstitial hydrogen doping facilitates charge transfer from Pd to H owing to their electronegativity difference. These synergistic effects modulate the electronic structure, thereby enhancing both activity and stability. When employed in Zn-air batteries, PdH-Pd@CN delivers a maximum power density of 176 mW cm− (Liu et al., 2025) and capacity of 805 mAh g− (Sun et al., 2021) Zn. These findings demonstrate the strong potential of PdH-Pd@CN as an efficient ORR electrocatalyst for next-generation metal-air batteries and related energy technologies. acknowledged_ssus: - _id: EM-Fac - _id: NanoFab acknowledgement: The authors thank the support from the National Natural Science Foundation of China (NSFC) (Grants No. 22302151) and Natural Science Foundation of Hubei Province (Grants No. 2024AFB755, 2024AFB267), Key Project of Hubei Provincial Department of Education Scientific Research Plan (F2023007). This work is supported by funding from Shandong Provincial Key Laboratory of MonocrystallineSilicon Semiconductor Materials and Technology (2025KFKT021). This research was supported by the Scientific Service Units (SSU) of ISTA Austria through resources provided by the Electron Microscopy Facility (EMF) and the Nanofabrication Facility (NNF). “M.I. and S.H. acknowledge financial support from ISTA and the Werner Siemens Foundation.” article_number: '123348' article_processing_charge: Yes (in subscription journal) article_type: original author: - first_name: Changwei full_name: Shi, Changwei last_name: Shi - first_name: Sharona full_name: Horta, Sharona id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc last_name: Horta - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 - first_name: Tanja full_name: Kallio, Tanja last_name: Kallio - first_name: Paulina R. full_name: Martínez-Alanis, Paulina R. last_name: Martínez-Alanis - first_name: Xiang full_name: Wang, Xiang last_name: Wang - first_name: Andreu full_name: Cabot, Andreu last_name: Cabot citation: ama: Shi C, Horta S, Ibáñez M, et al. Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance. Chemical Engineering Science. 2026;324. doi:10.1016/j.ces.2026.123348 apa: Shi, C., Horta, S., Ibáñez, M., Kallio, T., Martínez-Alanis, P. R., Wang, X., & Cabot, A. (2026). Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance. Chemical Engineering Science. Elsevier. https://doi.org/10.1016/j.ces.2026.123348 chicago: Shi, Changwei, Sharona Horta, Maria Ibáñez, Tanja Kallio, Paulina R. Martínez-Alanis, Xiang Wang, and Andreu Cabot. “Hydrogen Induced Palladium-Based Heterojunction Electrocatalysts to Enhance the Oxygen Reduction Reaction Performance.” Chemical Engineering Science. Elsevier, 2026. https://doi.org/10.1016/j.ces.2026.123348. ieee: C. Shi et al., “Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance,” Chemical Engineering Science, vol. 324. Elsevier, 2026. ista: Shi C, Horta S, Ibáñez M, Kallio T, Martínez-Alanis PR, Wang X, Cabot A. 2026. Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance. Chemical Engineering Science. 324, 123348. mla: Shi, Changwei, et al. “Hydrogen Induced Palladium-Based Heterojunction Electrocatalysts to Enhance the Oxygen Reduction Reaction Performance.” Chemical Engineering Science, vol. 324, 123348, Elsevier, 2026, doi:10.1016/j.ces.2026.123348. short: C. Shi, S. Horta, M. Ibáñez, T. Kallio, P.R. Martínez-Alanis, X. Wang, A. Cabot, Chemical Engineering Science 324 (2026). date_created: 2026-01-25T23:01:39Z date_published: 2026-01-12T00:00:00Z date_updated: 2026-02-12T13:05:19Z day: '12' ddc: - '540' department: - _id: MaIb doi: 10.1016/j.ces.2026.123348 has_accepted_license: '1' intvolume: ' 324' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.ces.2026.123348 month: '01' oa: 1 oa_version: Published Version project: - _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery' publication: Chemical Engineering Science publication_identifier: eissn: - 0009-2509 issn: - 1873-4405 publication_status: epub_ahead publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 324 year: '2026' ... --- OA_place: repository OA_type: green _id: '21056' abstract: - lang: eng text: "In this work, we introduce and study what we believe is an intriguing, and, to the best of our knowledge, previously unknown connection between two fundamental areas in computational topology, namely topological data analysis (TDA) and knot theory. Given a function from a topological space to ℝ, TDA provides tools to simplify and study the importance of topological features: in particular, the \U0001D459^\U0001D461⁢ℎ-dimensional persistence diagram encodes the topological changes (or \U0001D459-homology) in the sublevel set as the function value increases into a set of points in the plane. Given a continuous one parameter family of such functions, we can combine the persistence diagrams into an object known as a vineyard, which tracks the evolution of points in the persistence diagram as the function changes. If we further restrict that family of functions to be periodic, we identify the two ends of the vineyard, yielding a closed vineyard. This allows the study of monodromy, which in this context means that following the family of functions for a period permutes the set of points in a non-trivial way. Recent work has studied monodromy in the directional persistent homology transform, demonstrating some interesting connections between an input shape and monodromy in the persistent homology transform for 0-dimensional homology embedded in ℝ^2.\r\nIn this work, given a link and a value \U0001D459, we construct a topological space (based on the given link) and periodic family of functions on this space (based on the Euclidean distance function), such that the closed \U0001D459-vineyard contains this link. This shows that vineyards are topologically as rich as one could possibly hope, suggesting many future directions of work. Importantly, it has at least two immediate consequences we explicitly point out:\r\n1.\tMonodromy of any periodicity can occur in a \U0001D459-vineyard for any \U0001D459. This answers a variant of a question by Arya and collaborators. To exhibit this as a consequence of our first main result we also reformulate monodromy in a more geometric way, which may be of interest in itself.\r\n2.\tTopologically distinguishing closed vineyards is likely to be difficult (from a complexity theory as well as from a practical perspective) because of the difficulty of knot and link recognition, which have strong connections to many NP-hard problems." acknowledgement: We thank the reviewers for both SODA and ATMCS for their comments, whichimproved the exposition. We thank Kate Turner for discussion and Clément Maria for pointing out thatAlexander’s theorem was already (well) known. Mathijs Wintraecken would like to express his gratitude tothe administrative support he received from University of Notre Dame during his visit and from Sophie Honnoratand Stephanie Verdonck at Inria in general.This work has been supported by the ANR grant StratMesh, ANR-24-CE48-1899, by NSF award 2444309, andthe welcome package from IDEX of the Université Côte d’Azur, ANR-15-IDEX-01. article_processing_charge: No arxiv: 1 author: - first_name: Erin W. full_name: Chambers, Erin W. last_name: Chambers - first_name: Christopher D full_name: Fillmore, Christopher D id: 35638A5C-AAC7-11E9-B0BF-5503E6697425 last_name: Fillmore - first_name: Elizabeth R full_name: Stephenson, Elizabeth R id: 2D04F932-F248-11E8-B48F-1D18A9856A87 last_name: Stephenson orcid: 0000-0002-6862-208X - first_name: Mathijs full_name: Wintraecken, Mathijs id: 307CFBC8-F248-11E8-B48F-1D18A9856A87 last_name: Wintraecken orcid: 0000-0002-7472-2220 citation: ama: 'Chambers EW, Fillmore CD, Stephenson ER, Wintraecken M. Braiding Vineyards. In: Green Larsen K, Saha B, eds. Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms. Philadelphia, PA, United States: Society for Industrial and Applied Mathematics; 2026:6240-6263. doi:10.1137/1.9781611978971.225' apa: 'Chambers, E. W., Fillmore, C. D., Stephenson, E. R., & Wintraecken, M. (2026). Braiding Vineyards. In K. Green Larsen & B. Saha (Eds.), Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms (pp. 6240–6263). Philadelphia, PA, United States: Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611978971.225' chicago: 'Chambers, Erin W., Christopher D Fillmore, Elizabeth R Stephenson, and Mathijs Wintraecken. “Braiding Vineyards.” In Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms, edited by Kasper Green Larsen and Barna Saha, 6240–63. Philadelphia, PA, United States: Society for Industrial and Applied Mathematics, 2026. https://doi.org/10.1137/1.9781611978971.225.' ieee: 'E. W. Chambers, C. D. Fillmore, E. R. Stephenson, and M. Wintraecken, “Braiding Vineyards,” in Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms, K. Green Larsen and B. Saha, Eds. Philadelphia, PA, United States: Society for Industrial and Applied Mathematics, 2026, pp. 6240–6263.' ista: 'Chambers EW, Fillmore CD, Stephenson ER, Wintraecken M. 2026.Braiding Vineyards. In: Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms. , 6240–6263.' mla: Chambers, Erin W., et al. “Braiding Vineyards.” Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms, edited by Kasper Green Larsen and Barna Saha, Society for Industrial and Applied Mathematics, 2026, pp. 6240–63, doi:10.1137/1.9781611978971.225. short: E.W. Chambers, C.D. Fillmore, E.R. Stephenson, M. Wintraecken, in:, K. Green Larsen, B. Saha (Eds.), Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, Philadelphia, PA, United States, 2026, pp. 6240–6263. date_created: 2026-01-28T12:58:16Z date_published: 2026-01-07T00:00:00Z date_updated: 2026-02-16T08:06:23Z day: '07' department: - _id: HeEd doi: 10.1137/1.9781611978971.225 editor: - first_name: Kasper full_name: Green Larsen, Kasper last_name: Green Larsen - first_name: Barna full_name: Saha, Barna last_name: Saha external_id: arxiv: - '2504.11203' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2504.11203 month: '01' oa: 1 oa_version: Preprint page: 6240-6263 place: Philadelphia, PA, United States publication: Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms publication_identifier: eisbn: - '9781611978971' publication_status: published publisher: Society for Industrial and Applied Mathematics quality_controlled: '1' related_material: record: - id: '21051' relation: earlier_version status: public status: public title: Braiding Vineyards type: book_chapter user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- _id: '21116' abstract: - lang: eng text: Sex-chromosome systems are highly variable across animals, but how they transition from one to another is not well understood. Diptera have undergone multiple sex-chromosome turnovers and expansions while maintaining their general chromosomal content, which makes them an ideal clade to study such transitions. We analyzed more than 100 dipteran whole-genome assemblies and identified 4 new lineages that underwent sex-chromosome turnover (in addition to the 5 previously reported). We find that the majority of turnovers happened in the group Schizophora, which tend to have fewer genes on Muller element F (the chromosome homologous to the ancestral insect X chromosome) than lower dipterans, a factor previously hypothesized to facilitate turnover. Most derived X chromosomes have higher GC content than autosomes, consistent with a high prevalence of male achiasmy in Diptera. In addition, an excess of gene movement out of the X is detected for most of these new X chromosomes, and many of these moved genes have high testis expression in Drosophila, suggesting that out-of-X gene movement contributes to the long-term demasculinization of X chromosomes. article_processing_charge: No author: - first_name: Lorena Alexandra full_name: Layana Franco, Lorena Alexandra id: 02814589-eb8f-11eb-b029-a70074f3f18f last_name: Layana Franco orcid: 0000-0002-1253-6297 - first_name: Melissa A full_name: Toups, Melissa A id: 4E099E4E-F248-11E8-B48F-1D18A9856A87 last_name: Toups orcid: 0000-0002-9752-7380 - first_name: Beatriz full_name: Vicoso, Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 citation: ama: Layana Franco LA, Toups MA, Vicoso B. Research Data for “Causes and consequences of sex-chromosome turnovers in Diptera.” 2026. doi:10.15479/AT-ISTA-21116 apa: Layana Franco, L. A., Toups, M. A., & Vicoso, B. (2026). Research Data for “Causes and consequences of sex-chromosome turnovers in Diptera.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-21116 chicago: Layana Franco, Lorena Alexandra, Melissa A Toups, and Beatriz Vicoso. “Research Data for ‘Causes and Consequences of Sex-Chromosome Turnovers in Diptera.’” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-21116. ieee: L. A. Layana Franco, M. A. Toups, and B. Vicoso, “Research Data for ‘Causes and consequences of sex-chromosome turnovers in Diptera.’” Institute of Science and Technology Austria, 2026. ista: Layana Franco LA, Toups MA, Vicoso B. 2026. Research Data for ‘Causes and consequences of sex-chromosome turnovers in Diptera’, Institute of Science and Technology Austria, 10.15479/AT-ISTA-21116. mla: Layana Franco, Lorena Alexandra, et al. Research Data for “Causes and Consequences of Sex-Chromosome Turnovers in Diptera.” Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-21116. short: L.A. Layana Franco, M.A. Toups, B. Vicoso, (2026). corr_author: '1' date_created: 2026-01-30T11:04:14Z date_published: 2026-01-02T00:00:00Z date_updated: 2026-02-12T12:58:00Z day: '2' department: - _id: BeVi doi: 10.15479/AT-ISTA-21116 file: - access_level: open_access checksum: 0b79be6229f2ad9ac117ef00fc4f5c0e content_type: text/plain creator: llayanaf date_created: 2026-01-30T11:00:24Z date_updated: 2026-01-30T11:00:24Z file_id: '21117' file_name: README.txt file_size: 1201 relation: main_file success: 1 - access_level: open_access checksum: a3cda72e4177fa1e5d3f0f6a88f8a79b content_type: application/zip creator: llayanaf date_created: 2026-01-30T11:00:36Z date_updated: 2026-01-30T11:00:36Z file_id: '21118' file_name: Supplementary_Tables.zip file_size: 572403 relation: main_file success: 1 - access_level: open_access checksum: efb5b64698d6ca9e7b675204f6fc1c29 content_type: application/zip creator: llayanaf date_created: 2026-01-30T11:00:48Z date_updated: 2026-01-30T11:00:48Z file_id: '21119' file_name: Supplementary_Datasets.zip file_size: 19054553 relation: main_file success: 1 - access_level: open_access checksum: 254e050f648e9783ba8fe11adb3b49db content_type: application/zip creator: llayanaf date_created: 2026-01-30T11:00:56Z date_updated: 2026-01-30T11:00:56Z file_id: '21120' file_name: Perl_scripts.zip file_size: 4575 relation: main_file success: 1 file_date_updated: 2026-01-30T11:00:56Z has_accepted_license: '1' keyword: - Schizophora - sex chromosomes - sex-chromosome turnover - Diptera - genomic features - out-of-X movement. month: '01' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: Research Data for "Causes and consequences of sex-chromosome turnovers in Diptera" tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d year: '2026' ... --- OA_place: repository OA_type: green _id: '21135' abstract: - lang: eng text: Three-dimensional (3D) microscopy data is often anisotropic with significantly lower resolution (up to 8x) along the z axis than along the xy axes. Computationally generating plausible isotropic resolution from anisotropic imaging data would benefit the visual analysis of large-scale volumes. This paper proposes niiv, a self-supervised method for isotropic reconstruction of 3D microscopy data that can quickly produce images at arbitrary output resolutions. The representation embeds a learned latent code within a neural field that describes the implicit higher-resolution isotropic image region. We use an attention-guided latent interpolation approach, which allows flexible information exchange over a local latent neighborhood. Under isotropic volume assumptions, we self-supervise this representation on low-/high-resolution lateral image pairs to reconstruct an isotropic volume from low-resolution axial images. We evaluate our method on simulated and real anisotropic electron (EM) and light microscopy (LM) data. Compared to diffusion-based baselines, niiv shows improved reconstruction quality (+1 dB PSNR) and is over three orders of magnitude faster (1,000x) to infer. Specifically, niiv reconstructs a 128^3 voxel volume in 2/10th of a second, renderable at varying (continuous) high resolutions for display. Our code is available at https://github.com/jakobtroidl/niiv-miccai. acknowledgement: This work was supported by NIH grants 1U01NS132158 and R01HD104969. We thank the reviewers for their constructive feedback. alternative_title: - LNCS article_processing_charge: No author: - first_name: Jakob full_name: Troidl, Jakob last_name: Troidl - first_name: Yiqing full_name: Liang, Yiqing last_name: Liang - first_name: Johanna full_name: Beyer, Johanna last_name: Beyer - first_name: Mojtaba full_name: Tavakoli, Mojtaba id: 3A0A06F4-F248-11E8-B48F-1D18A9856A87 last_name: Tavakoli orcid: 0000-0002-7667-6854 - first_name: Johann G full_name: Danzl, Johann G id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87 last_name: Danzl orcid: 0000-0001-8559-3973 - first_name: Markus full_name: Hadwiger, Markus last_name: Hadwiger - first_name: Hanspeter full_name: Pfister, Hanspeter last_name: Pfister - first_name: James full_name: Tompkin, James last_name: Tompkin citation: ama: 'Troidl J, Liang Y, Beyer J, et al. niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction. In: 1st International Workshop on Efficient Medical Artificial Intelligence. Vol 16318. Springer Nature; 2026:257-267. doi:10.1007/978-3-032-13961-0_26' apa: 'Troidl, J., Liang, Y., Beyer, J., Tavakoli, M., Danzl, J. G., Hadwiger, M., … Tompkin, J. (2026). niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction. In 1st International Workshop on Efficient Medical Artificial Intelligence (Vol. 16318, pp. 257–267). Daejeon, South Korea: Springer Nature. https://doi.org/10.1007/978-3-032-13961-0_26' chicago: 'Troidl, Jakob, Yiqing Liang, Johanna Beyer, Mojtaba Tavakoli, Johann G Danzl, Markus Hadwiger, Hanspeter Pfister, and James Tompkin. “Niiv: Interactive Self-Supervised Neural Implicit Isotropic Volume Reconstruction.” In 1st International Workshop on Efficient Medical Artificial Intelligence, 16318:257–67. Springer Nature, 2026. https://doi.org/10.1007/978-3-032-13961-0_26.' ieee: 'J. Troidl et al., “niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction,” in 1st International Workshop on Efficient Medical Artificial Intelligence, Daejeon, South Korea, 2026, vol. 16318, pp. 257–267.' ista: 'Troidl J, Liang Y, Beyer J, Tavakoli M, Danzl JG, Hadwiger M, Pfister H, Tompkin J. 2026. niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction. 1st International Workshop on Efficient Medical Artificial Intelligence. EMA4MICCAI: Efficient Medical Artificial Intelligence, LNCS, vol. 16318, 257–267.' mla: 'Troidl, Jakob, et al. “Niiv: Interactive Self-Supervised Neural Implicit Isotropic Volume Reconstruction.” 1st International Workshop on Efficient Medical Artificial Intelligence, vol. 16318, Springer Nature, 2026, pp. 257–67, doi:10.1007/978-3-032-13961-0_26.' short: J. Troidl, Y. Liang, J. Beyer, M. Tavakoli, J.G. Danzl, M. Hadwiger, H. Pfister, J. Tompkin, in:, 1st International Workshop on Efficient Medical Artificial Intelligence, Springer Nature, 2026, pp. 257–267. conference: end_date: 2025-09-23 location: Daejeon, South Korea name: 'EMA4MICCAI: Efficient Medical Artificial Intelligence' start_date: 2025-09-23 date_created: 2026-02-01T23:01:44Z date_published: 2026-01-03T00:00:00Z date_updated: 2026-02-16T08:50:50Z day: '03' department: - _id: JoDa doi: 10.1007/978-3-032-13961-0_26 intvolume: ' 16318' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1101/2024.09.07.611785 month: '01' oa: 1 oa_version: Preprint page: 257-267 publication: 1st International Workshop on Efficient Medical Artificial Intelligence publication_identifier: eissn: - 1611-3349 isbn: - '9783032139603' issn: - 0302-9743 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: link: - relation: software url: https://github.com/jakobtroidl/niiv-miccai scopus_import: '1' status: public title: 'niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction' type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 16318 year: '2026' ... --- OA_place: repository OA_type: green _id: '21140' abstract: - lang: eng text: 'We consider several problems related to packing forests in graphs. The first one is to find k edge-disjoint forests in a directed graph G of maximal size such that the indegree of each vertex in these forests is at most k. We describe a min-max characterization for this problem and show that it can be solved in almost linear time for fixed k, extending the algorithm of [Gabow, 1995]. Specifically, the complexity is O(kδm log n), where n, m are the number of vertices and edges in G respectively, and δ = max{1, k − kG}, where kG is the edge connectivity of the graph. Using our solution to this problem, we improve complexities for two existing applications:(1) k-forest problem: find k forests in an undirected graph G maximizing the number of edges in their union. We show how to solve this problem in O(k3 min{kn, m} log2 n + k · MAXFLOW(m, m) log n) time, breaking the Ok(n3/2) complexity barrier of previously known approaches.(2) Directed edge-connectivity augmentation problem: find a smallest set of directed edges whose addition to the given directed graph makes it strongly k-connected. We improve the deterministic complexity for this problem from O(kδ(m + δn) log n) [Gabow, STOC 1994] to O(kδm log n). A similar approach with the same complexity also works for the undirected version of the problem.' article_processing_charge: No arxiv: 1 author: - first_name: Pavel full_name: Arkhipov, Pavel id: b25f2ab2-1fed-11ee-8599-fe02d211784f last_name: Arkhipov - first_name: Vladimir full_name: Kolmogorov, Vladimir id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87 last_name: Kolmogorov citation: ama: 'Arkhipov P, Kolmogorov V. Faster algorithms for packing forests in graphs and related problems. In: Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms. Society for Industrial and Applied Mathematics; 2026:4023-4042. doi:10.1137/1.9781611978971.148' apa: 'Arkhipov, P., & Kolmogorov, V. (2026). Faster algorithms for packing forests in graphs and related problems. In Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms (pp. 4023–4042). Vancouver, Canada: Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611978971.148' chicago: Arkhipov, Pavel, and Vladimir Kolmogorov. “Faster Algorithms for Packing Forests in Graphs and Related Problems.” In Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms, 4023–42. Society for Industrial and Applied Mathematics, 2026. https://doi.org/10.1137/1.9781611978971.148. ieee: P. Arkhipov and V. Kolmogorov, “Faster algorithms for packing forests in graphs and related problems,” in Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms, Vancouver, Canada, 2026, pp. 4023–4042. ista: 'Arkhipov P, Kolmogorov V. 2026. Faster algorithms for packing forests in graphs and related problems. Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms, 4023–4042.' mla: Arkhipov, Pavel, and Vladimir Kolmogorov. “Faster Algorithms for Packing Forests in Graphs and Related Problems.” Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2026, pp. 4023–42, doi:10.1137/1.9781611978971.148. short: P. Arkhipov, V. Kolmogorov, in:, Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2026, pp. 4023–4042. conference: end_date: 2026-01-14 location: Vancouver, Canada name: 'SODA: Symposium on Discrete Algorithms' start_date: 2026-01-11 corr_author: '1' date_created: 2026-02-05T10:51:34Z date_published: 2026-01-07T00:00:00Z date_updated: 2026-02-16T09:18:33Z day: '07' department: - _id: VlKo doi: 10.1137/1.9781611978971.148 external_id: arxiv: - '2409.20314' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2409.20314 month: '01' oa: 1 oa_version: Preprint page: 4023-4042 publication: Proceedings of the 2026 Annual ACM-SIAM Symposium on Discrete Algorithms publication_identifier: eisbn: - '9781611978971' publication_status: published publisher: Society for Industrial and Applied Mathematics quality_controlled: '1' status: public title: Faster algorithms for packing forests in graphs and related problems type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '21149' abstract: - lang: eng text: We present a general theoretical framework for helical dichroism (HD), establishing an explicit link between chiral resolution and orbital angular momentum (OAM) exchange in light–matter interaction. Tracing microscopic mechanisms of the OAM transfer, we derive rotational selection rules, which establish that HD emerges only from the spin–orbit coupling of light, even for beams without the far-field OAM. Our findings refine the conditions for observing HD, provide a tool to re-examine the outcome of prior experiments, and guide future designs for chiral sensing with structured light. acknowledgement: This research was funded in whole or in part by the Austrian Science Fund (FWF) [10.55776/F1004]. article_number: '053204' article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Mateja full_name: Hrast, Mateja id: 48dbb294-2a9c-11ef-905d-f56be71f0e5d last_name: Hrast - first_name: Georgios full_name: Koutentakis, Georgios id: d7b23d3a-9e21-11ec-b482-f76739596b95 last_name: Koutentakis - first_name: Mikhail full_name: Maslov, Mikhail id: 2E65BB0E-F248-11E8-B48F-1D18A9856A87 last_name: Maslov orcid: 0000-0003-4074-2570 - first_name: Mikhail full_name: Lemeshko, Mikhail id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 citation: ama: Hrast M, Koutentakis G, Maslov M, Lemeshko M. Bottom-up analysis of rovibrational helical dichroism. Physical Review Letters. 2026;136(5). doi:10.1103/fkf1-1jml apa: Hrast, M., Koutentakis, G., Maslov, M., & Lemeshko, M. (2026). Bottom-up analysis of rovibrational helical dichroism. Physical Review Letters. American Physical Society. https://doi.org/10.1103/fkf1-1jml chicago: Hrast, Mateja, Georgios Koutentakis, Mikhail Maslov, and Mikhail Lemeshko. “Bottom-up Analysis of Rovibrational Helical Dichroism.” Physical Review Letters. American Physical Society, 2026. https://doi.org/10.1103/fkf1-1jml. ieee: M. Hrast, G. Koutentakis, M. Maslov, and M. Lemeshko, “Bottom-up analysis of rovibrational helical dichroism,” Physical Review Letters, vol. 136, no. 5. American Physical Society, 2026. ista: Hrast M, Koutentakis G, Maslov M, Lemeshko M. 2026. Bottom-up analysis of rovibrational helical dichroism. Physical Review Letters. 136(5), 053204. mla: Hrast, Mateja, et al. “Bottom-up Analysis of Rovibrational Helical Dichroism.” Physical Review Letters, vol. 136, no. 5, 053204, American Physical Society, 2026, doi:10.1103/fkf1-1jml. short: M. Hrast, G. Koutentakis, M. Maslov, M. Lemeshko, Physical Review Letters 136 (2026). corr_author: '1' date_created: 2026-02-06T10:53:17Z date_published: 2026-02-05T00:00:00Z date_updated: 2026-02-10T11:30:37Z day: '05' ddc: - '530' department: - _id: MiLe doi: 10.1103/fkf1-1jml external_id: arxiv: - '2505.16393' file: - access_level: open_access checksum: 805c929fff9fd4d0e733293eaace67b8 content_type: application/pdf creator: dernst date_created: 2026-02-10T11:25:46Z date_updated: 2026-02-10T11:25:46Z file_id: '21210' file_name: 2026_PhysicalReviewLetters_Hrast.pdf file_size: 511312 relation: main_file success: 1 file_date_updated: 2026-02-10T11:25:46Z has_accepted_license: '1' intvolume: ' 136' issue: '5' language: - iso: eng month: '02' oa: 1 oa_version: Published Version project: - _id: 7c040762-9f16-11ee-852c-dd79eeee4ab3 grant_number: F100403 name: Coherent Optical Metrology Beyond Electric-Dipole-Allowed Transitions publication: Physical Review Letters publication_identifier: eissn: - 1079-7114 issn: - 0031-9007 publication_status: published publisher: American Physical Society quality_controlled: '1' scopus_import: '1' status: public title: Bottom-up analysis of rovibrational helical dichroism tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 136 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '21161' abstract: - lang: eng text: In many species, sex-biased expression is widespread and thought to contribute to sexual dimorphism. While bulk RNA-sequencing has been instrumental in identifying strongly sex-biased genes, it lacks resolution to assess variation across cell-types and tissue compartments. Using single-nucleus expression data from the Fly Cell Atlas, we investigate sex differences in adult Drosophila melanogaster. We find that differences in cell-type composition between the sexes are not a major source of sex-bias, as for the vast majority of genes, the degree of sex-bias is similar regardless of whether sex differences in cell-type composition are controlled for or not. Our analysis confirms a deficit of X-linked male-biased genes in the body’s somatic tissues that is widespread across cell-types. We also find the excess of X-linked female-biased genes to be associated with nervous system cells in the head but with epithelial cells in the body’s somatic tissues, showing that single-nucleus data crucially resolves sex-bias at the cell-type level. We investigate dosage compensation (DC) across 15 tissues and 17 cell-types. We observe that it varies throughout the body. Surprisingly, we observe a lack of DC in a cluster of main cells within the male accessory glands. This result highlights the importance of understanding context-dependent DC. acknowledged_ssus: - _id: ScienComp - _id: Bio acknowledgement: This work was partly funded by an Austrian Science Foundation FWF ESPRIT fellowship (10.55776/ESP6331524) to C.B. We would like to thank the Vicoso group for their invaluable input and discussions throughout this work. We thank Filip Ruzicka for his insightful comments on the manuscript. All computational resources were provided by the Scientific Computing Unit at ISTA. This research was also supported through resources provided by the Imaging & Optics Facility (IOF) at ISTA. article_number: '20252471' article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Carolina full_name: De Castro Barbosa Rodrigues Barata, Carolina id: 20565186-803f-11ed-ab7e-96a4ff7694ef last_name: De Castro Barbosa Rodrigues Barata orcid: 0000-0003-1945-2245 - first_name: Beatriz full_name: Vicoso, Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 citation: ama: de Castro Barbosa Rodrigues Barata C, Vicoso B. Single-nucleus resolution of sex-biased expression and dosage compensation in Drosophila melanogaster. Proceedings of the Royal Society B Biological Sciences. 2026;293(2063). doi:10.1098/rspb.2025.2471 apa: de Castro Barbosa Rodrigues Barata, C., & Vicoso, B. (2026). Single-nucleus resolution of sex-biased expression and dosage compensation in Drosophila melanogaster. Proceedings of the Royal Society B Biological Sciences. Royal Society of London. https://doi.org/10.1098/rspb.2025.2471 chicago: Castro Barbosa Rodrigues Barata, Carolina de, and Beatriz Vicoso. “Single-Nucleus Resolution of Sex-Biased Expression and Dosage Compensation in Drosophila Melanogaster.” Proceedings of the Royal Society B Biological Sciences. Royal Society of London, 2026. https://doi.org/10.1098/rspb.2025.2471. ieee: C. de Castro Barbosa Rodrigues Barata and B. Vicoso, “Single-nucleus resolution of sex-biased expression and dosage compensation in Drosophila melanogaster,” Proceedings of the Royal Society B Biological Sciences, vol. 293, no. 2063. Royal Society of London, 2026. ista: de Castro Barbosa Rodrigues Barata C, Vicoso B. 2026. Single-nucleus resolution of sex-biased expression and dosage compensation in Drosophila melanogaster. Proceedings of the Royal Society B Biological Sciences. 293(2063), 20252471. mla: de Castro Barbosa Rodrigues Barata, Carolina, and Beatriz Vicoso. “Single-Nucleus Resolution of Sex-Biased Expression and Dosage Compensation in Drosophila Melanogaster.” Proceedings of the Royal Society B Biological Sciences, vol. 293, no. 2063, 20252471, Royal Society of London, 2026, doi:10.1098/rspb.2025.2471. short: C. de Castro Barbosa Rodrigues Barata, B. Vicoso, Proceedings of the Royal Society B Biological Sciences 293 (2026). corr_author: '1' date_created: 2026-02-08T23:02:49Z date_published: 2026-01-28T00:00:00Z date_updated: 2026-02-16T09:27:33Z day: '28' ddc: - '570' department: - _id: BeVi doi: 10.1098/rspb.2025.2471 external_id: pmid: - '41592777' file: - access_level: open_access checksum: d76afebca0a6f112df0146ae2d929f36 content_type: application/pdf creator: dernst date_created: 2026-02-16T09:26:02Z date_updated: 2026-02-16T09:26:02Z file_id: '21226' file_name: 2026_RoyalSocPubProceedingsB_Barata.pdf file_size: 2230841 relation: main_file success: 1 file_date_updated: 2026-02-16T09:26:02Z has_accepted_license: '1' intvolume: ' 293' issue: '2063' language: - iso: eng month: '01' oa: 1 oa_version: Published Version pmid: 1 project: - _id: 90ef7108-16d5-11f0-9cad-e6e116913473 grant_number: ESP 6331524 name: Does genetic drift set a limit on the adaptive evolution of sex-biased expression? publication: Proceedings of the Royal Society B Biological Sciences publication_identifier: eissn: - 1471-2954 publication_status: published publisher: Royal Society of London quality_controlled: '1' scopus_import: '1' status: public title: Single-nucleus resolution of sex-biased expression and dosage compensation in Drosophila melanogaster tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 293 year: '2026' ... --- OA_place: repository OA_type: green _id: '21212' abstract: - lang: eng text: "Malignant glioma is incurable. Using a mouse genetic mosaic system to generate sporadic Trp53,Nf1-null OPCs, we previously identified oligodendrocyte precursor cell (OPC) as a cell-of-origin of glioma. Here, we report that pre-malignant Trp53,Nf1-null OPCs outcompete wildtype counterparts during their expansion. Blocking competition by mutating/strengthening wildtype OPCs impeded both pre-malignant progression and malignant expansion of glioma.\r\n\r\n“In-tissue” phosphoproteomic profiling revealed an enrichment of phosphopeptides related to RNA splicing and protein translation at the peak of cell competition, suggesting that competitiveness may stem from unique protein species. Among candidates was mTORC1, whose pharmacological inhibition or genetic disruption resulted in a loss of competitiveness in our mouse model. Finally, analysis of patient biopsies and interrogating the role of individual gliomagenic mutations in OPC competition supported its relevance in human gliomas. Together, these findings identified the driving role of competitive interactions among OPCs in gliomagenesis, and suggest unconventional therapeutic strategies to target this process." acknowledgement: "We thank Dr. Wenjie Liu for providing critical feedback on the manuscript. We also thank Dr.\r\nPat Pramoonjago at the Biorepository and Tissue Research Facility, and Hope Davis at the\r\nvivarium for their assistance on the project. These Core Facilities are supported by UVA Cancer\r\nCenter grant #P30-CA044579. We are grateful to Dr. Jonathan A. Epstein for providing the\r\nNf1GRD/+ mouse strain (https://pubmed.ncbi.nlm.nih.gov/26460546/). This work was partly\r\nsupported by the National Institute of Neurological Diseases and Stroke R21 NS125479-01A1\r\n(H.Z.), American Cancer Society Institutional Research Grant to the University of Virginia\r\n(Y.J.), the National Natural Science Foundation of China #82072787 (M.Y.), the National\r\nCancer Institute U54 CA238114 (F.W.), U01 CA284193 (K.M.N.), and U54 CA274499 (K.A.J.,\r\nM.F-S.), the National institute of General Medical Sciences R35 GM133404 (M.F-S.), the Dr.\r\nMiriam and Sheldon G. Adelson Medical Research Foundation (H.I.K., S.A.G.), the National\r\nCenter for Advancing Translational Sciences KL2TR001882 (K.S.P.), Tower Cancer Career Development Grant (K.S.P.), McKnight Neurobiology of Brain Disorders Grant (K.S.P.). The\r\ncontent is solely the responsibility of the authors and does not necessarily represent the official\r\nviews of the National Institutes of Health. Illustrations in this manuscript were created with\r\nBioRender (BioRender.com)." article_processing_charge: No author: - first_name: Ying full_name: Jiang, Ying last_name: Jiang - first_name: Ryuhjin full_name: Ahn, Ryuhjin last_name: Ahn - first_name: Arthur full_name: Huang, Arthur last_name: Huang - first_name: Phillippe P. full_name: Gonzalez, Phillippe P. last_name: Gonzalez - first_name: Jungeun full_name: Kim, Jungeun last_name: Kim - first_name: Guoxin full_name: Zhang, Guoxin last_name: Zhang - first_name: Zihao full_name: Liu, Zihao last_name: Liu - first_name: Zhenqiang full_name: He, Zhenqiang last_name: He - first_name: Lindsey full_name: Dudley, Lindsey last_name: Dudley - first_name: Kunal S. full_name: Patel, Kunal S. last_name: Patel - first_name: Godfrey A. full_name: Dzhivhuho, Godfrey A. last_name: Dzhivhuho - first_name: Sam full_name: Crowl, Sam last_name: Crowl - first_name: Piotr full_name: Przanowski, Piotr last_name: Przanowski - first_name: Luisa Quesada full_name: Camacho, Luisa Quesada last_name: Camacho - first_name: Sijie full_name: Hao, Sijie last_name: Hao - first_name: Jianhao full_name: Zeng, Jianhao last_name: Zeng - first_name: Simon full_name: Hippenmeyer, Simon id: 37B36620-F248-11E8-B48F-1D18A9856A87 last_name: Hippenmeyer orcid: 0000-0003-2279-1061 - first_name: Mohammad full_name: Fallahi-Sichani, Mohammad last_name: Fallahi-Sichani - first_name: Kevin A. full_name: Janes, Kevin A. last_name: Janes - first_name: Kristen M. full_name: Naegle, Kristen M. last_name: Naegle - first_name: Marie-Louise full_name: Hammarskjold, Marie-Louise last_name: Hammarskjold - first_name: Steven A. full_name: Goldman, Steven A. last_name: Goldman - first_name: Harley I. full_name: Kornblum, Harley I. last_name: Kornblum - first_name: Maojin full_name: Yao, Maojin last_name: Yao - first_name: Forest full_name: White, Forest last_name: White - first_name: Hui full_name: Zong, Hui last_name: Zong citation: ama: Jiang Y, Ahn R, Huang A, et al. Critical role of cell competition in gliomagenesis. bioRxiv. 2026. doi:10.64898/2026.01.15.699808 apa: Jiang, Y., Ahn, R., Huang, A., Gonzalez, P. P., Kim, J., Zhang, G., … Zong, H. (2026). Critical role of cell competition in gliomagenesis. bioRxiv. https://doi.org/10.64898/2026.01.15.699808 chicago: Jiang, Ying, Ryuhjin Ahn, Arthur Huang, Phillippe P. Gonzalez, Jungeun Kim, Guoxin Zhang, Zihao Liu, et al. “Critical Role of Cell Competition in Gliomagenesis.” BioRxiv, 2026. https://doi.org/10.64898/2026.01.15.699808. ieee: Y. Jiang et al., “Critical role of cell competition in gliomagenesis,” bioRxiv. 2026. ista: Jiang Y, Ahn R, Huang A, Gonzalez PP, Kim J, Zhang G, Liu Z, He Z, Dudley L, Patel KS, Dzhivhuho GA, Crowl S, Przanowski P, Camacho LQ, Hao S, Zeng J, Hippenmeyer S, Fallahi-Sichani M, Janes KA, Naegle KM, Hammarskjold M-L, Goldman SA, Kornblum HI, Yao M, White F, Zong H. 2026. Critical role of cell competition in gliomagenesis. bioRxiv, 10.64898/2026.01.15.699808. mla: Jiang, Ying, et al. “Critical Role of Cell Competition in Gliomagenesis.” BioRxiv, 2026, doi:10.64898/2026.01.15.699808. short: Y. Jiang, R. Ahn, A. Huang, P.P. Gonzalez, J. Kim, G. Zhang, Z. Liu, Z. He, L. Dudley, K.S. Patel, G.A. Dzhivhuho, S. Crowl, P. Przanowski, L.Q. Camacho, S. Hao, J. Zeng, S. Hippenmeyer, M. Fallahi-Sichani, K.A. Janes, K.M. Naegle, M.-L. Hammarskjold, S.A. Goldman, H.I. Kornblum, M. Yao, F. White, H. Zong, BioRxiv (2026). date_created: 2026-02-10T12:55:55Z date_published: 2026-01-16T00:00:00Z date_updated: 2026-02-16T10:12:42Z day: '16' ddc: - '570' department: - _id: SiHi doi: 10.64898/2026.01.15.699808 has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.64898/2026.01.15.699808 month: '01' oa: 1 oa_version: Preprint publication: bioRxiv publication_status: published status: public title: Critical role of cell competition in gliomagenesis tmp: image: /images/cc_by_nc_nd.png legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) short: CC BY-NC-ND (4.0) type: preprint user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold PlanS_conform: '1' _id: '21231' abstract: - lang: eng text: To assess cell migration in complex spatial environments, microfabricated chips, such as mazes and pillar forests, are routinely used to impose spatial and mechanical constraints, and cell trajectories are followed within these structures by advanced imaging techniques. In systems mechanobiology, computational models serve as essential tools to uncover how physical geometry influences intracellular dynamics; however, decoding such complex behaviors requires advanced inference techniques. Here, we integrated experimental observations of dendritic cell migration in a geometrically constrained microenvironment into a Cellular Potts model. We demonstrated that these spatial constraints modulate the motility dynamics, including speed and directional changes. We show that classical summary statistics, such as mean squared displacement and turning angle distributions, can resolve key mechanistic features but fail to extract richer spatiotemporal patterns, limiting accurate parameter inference. To solve this, we applied neural posterior estimation with in-the-loop learning of summary features. This learned summary representation of the data enables robust and flexible parameter inference, providing a data-driven framework for model calibration and advancing quantitative analysis of cell migration in structured microenvironments. acknowledgement: 'This work was supported by the German Federal Ministry of Education and Research (BMBF) (EMUNE/031L0293C), the European Union via the ERC grant INTEGRATE, grant agreement number 101126146, and under Germany’s Excellence Strategy by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) (EXC 2047—390685813, EXC 2151—390873048, FOR5775 — 533863915, and 524747443), the University of Bonn via the Schlegel Professorship of J.H., and the returning experts fellowship of the Ministry of Innovation, Science, and Research of North-Rhine-Westphalia (AZ: 421-8.03.03.02-137069). J.M. is a member of the Nanofabrication Facility and is supported by the Institute of Science and Technology Austria. E.K. acknowledges the TRA Life and Health (University of Bonn) as part of the Excellence Strategy of the federal and state governments. The authors thank Laeschkir Würthner for his insightful comments on the implementation of the authors’ model. The views and opinions expressed are those of the authors only and do not necessarily reflect those of the funding agencies. Parts of Fig. 1 were created using BioRender. Open Access funding enabled and organized by Projekt DEAL.' article_number: '20' article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Jonas full_name: Arruda, Jonas last_name: Arruda - first_name: Emad full_name: Alamoudi, Emad last_name: Alamoudi - first_name: Robert full_name: Mueller, Robert last_name: Mueller - first_name: Marc full_name: Vaisband, Marc last_name: Vaisband - first_name: Ronja full_name: Molkenbur, Ronja last_name: Molkenbur - first_name: Jack full_name: Merrin, Jack id: 4515C308-F248-11E8-B48F-1D18A9856A87 last_name: Merrin orcid: 0000-0001-5145-4609 - first_name: Eva full_name: Kiermaier, Eva last_name: Kiermaier - first_name: Jan full_name: Hasenauer, Jan last_name: Hasenauer citation: ama: Arruda J, Alamoudi E, Mueller R, et al. Simulation-based inference of cell migration dynamics in complex spatial environments. npj Systems Biology and Applications. 2026;12. doi:10.1038/s41540-026-00648-9 apa: Arruda, J., Alamoudi, E., Mueller, R., Vaisband, M., Molkenbur, R., Merrin, J., … Hasenauer, J. (2026). Simulation-based inference of cell migration dynamics in complex spatial environments. Npj Systems Biology and Applications. Springer Nature. https://doi.org/10.1038/s41540-026-00648-9 chicago: Arruda, Jonas, Emad Alamoudi, Robert Mueller, Marc Vaisband, Ronja Molkenbur, Jack Merrin, Eva Kiermaier, and Jan Hasenauer. “Simulation-Based Inference of Cell Migration Dynamics in Complex Spatial Environments.” Npj Systems Biology and Applications. Springer Nature, 2026. https://doi.org/10.1038/s41540-026-00648-9. ieee: J. Arruda et al., “Simulation-based inference of cell migration dynamics in complex spatial environments,” npj Systems Biology and Applications, vol. 12. Springer Nature, 2026. ista: Arruda J, Alamoudi E, Mueller R, Vaisband M, Molkenbur R, Merrin J, Kiermaier E, Hasenauer J. 2026. Simulation-based inference of cell migration dynamics in complex spatial environments. npj Systems Biology and Applications. 12, 20. mla: Arruda, Jonas, et al. “Simulation-Based Inference of Cell Migration Dynamics in Complex Spatial Environments.” Npj Systems Biology and Applications, vol. 12, 20, Springer Nature, 2026, doi:10.1038/s41540-026-00648-9. short: J. Arruda, E. Alamoudi, R. Mueller, M. Vaisband, R. Molkenbur, J. Merrin, E. Kiermaier, J. Hasenauer, Npj Systems Biology and Applications 12 (2026). date_created: 2026-02-16T10:44:31Z date_published: 2026-02-05T00:00:00Z date_updated: 2026-02-23T10:10:10Z day: '05' ddc: - '570' department: - _id: NanoFab doi: 10.1038/s41540-026-00648-9 external_id: pmid: - '41611727' file: - access_level: open_access checksum: 99b2e6bbaaedf45f22e07751948669f5 content_type: application/pdf creator: dernst date_created: 2026-02-23T10:09:03Z date_updated: 2026-02-23T10:09:03Z file_id: '21346' file_name: 2026_npjSysBioApp_Arruda.pdf file_size: 10217687 relation: main_file success: 1 file_date_updated: 2026-02-23T10:09:03Z has_accepted_license: '1' intvolume: ' 12' language: - iso: eng month: '02' oa: 1 oa_version: Published Version pmid: 1 publication: npj Systems Biology and Applications publication_identifier: eissn: - 2056-7189 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Simulation-based inference of cell migration dynamics in complex spatial environments tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 12 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold PlanS_conform: '1' _id: '21282' abstract: - lang: eng text: 'Developmental patterning comprises processes that range from purely instructed, where external signals specify cell fates, to fully self-organized, where spatial patterns emerge autonomously through cellular interactions. We propose that both extremes—as well as the continuum of intermediate cases—can be conceptualized as information-processing systems, whose operation can be described using “Marr''s three levels of analysis”: the computational problem being solved, the algorithms employed, and their molecular implementation. At the first level, we argue that normative theories, such as information-theoretic optimization principles, provide a formalization of the computational problem. At the second level, we show how simplified information-processing architectures provide a framework for developmental algorithms, which are formalized mathematically using dynamical systems theory. At the third level, the implementation of developmental algorithms is described by mechanistic biophysical and gene regulatory network models.' acknowledgement: We thank Edouard Hannezo, Anna Kicheva, Fridtjof Brauns, and all members of the Brückner and Tkačik groups for feedback and inspiring discussions. This work was supported in part by European Research Council ERC-2023-SyG “Dynatrans” Grant No. 101118866 (G.T.). This work was conducted while visiting the Okinawa Institute of Science and Technology (OIST) through the Theoretical Sciences Visiting Program (TSVP); at the Kavli Institute for Theoretical Physics (KITP) Santa Barbara, supported by NSF Grant No. PHY-1748958 and the Gordon and Betty Moore Foundation Grant No. 2919.02; and at Lucullus, Vienna. article_number: '017001' article_processing_charge: Yes article_type: original arxiv: 1 author: - first_name: David full_name: Brückner, David id: e1e86031-6537-11eb-953a-f7ab92be508d last_name: Brückner orcid: 0000-0001-7205-2975 - first_name: Gašper full_name: Tkačik, Gašper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkačik orcid: 0000-0002-6699-1455 citation: ama: 'Brückner D, Tkačik G. Marr’s three levels for embryonic development: Information, dynamical systems, gene networks. PRX Life. 2026;4. doi:10.1103/fdcf-dkws' apa: 'Brückner, D., & Tkačik, G. (2026). Marr’s three levels for embryonic development: Information, dynamical systems, gene networks. PRX Life. American Physical Society. https://doi.org/10.1103/fdcf-dkws' chicago: 'Brückner, David, and Gašper Tkačik. “Marr’s Three Levels for Embryonic Development: Information, Dynamical Systems, Gene Networks.” PRX Life. American Physical Society, 2026. https://doi.org/10.1103/fdcf-dkws.' ieee: 'D. Brückner and G. Tkačik, “Marr’s three levels for embryonic development: Information, dynamical systems, gene networks,” PRX Life, vol. 4. American Physical Society, 2026.' ista: 'Brückner D, Tkačik G. 2026. Marr’s three levels for embryonic development: Information, dynamical systems, gene networks. PRX Life. 4, 017001.' mla: 'Brückner, David, and Gašper Tkačik. “Marr’s Three Levels for Embryonic Development: Information, Dynamical Systems, Gene Networks.” PRX Life, vol. 4, 017001, American Physical Society, 2026, doi:10.1103/fdcf-dkws.' short: D. Brückner, G. Tkačik, PRX Life 4 (2026). corr_author: '1' date_created: 2026-02-17T08:29:10Z date_published: 2026-01-23T00:00:00Z date_updated: 2026-02-24T07:00:16Z day: '23' ddc: - '570' department: - _id: GaTk doi: 10.1103/fdcf-dkws external_id: arxiv: - '2510.24536' file: - access_level: open_access checksum: 99ef02dd741c4536eeefd12d409d5269 content_type: application/pdf creator: dernst date_created: 2026-02-24T06:57:44Z date_updated: 2026-02-24T06:57:44Z file_id: '21352' file_name: 2026_PRXLife_Brueckner.pdf file_size: 1147994 relation: main_file success: 1 file_date_updated: 2026-02-24T06:57:44Z has_accepted_license: '1' intvolume: ' 4' language: - iso: eng month: '01' oa: 1 oa_version: Published Version project: - _id: 7bfe6a29-9f16-11ee-852c-c0da5e2045d9 grant_number: '101118866' name: 'Transcription in 4D: the dynamic interplay between chromatin architecture and gene expression in developing pseudo-embryos' publication: PRX Life publication_identifier: eissn: - 2835-8279 publication_status: published publisher: American Physical Society quality_controlled: '1' status: public title: 'Marr''s three levels for embryonic development: Information, dynamical systems, gene networks' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 4 year: '2026' ... --- OA_place: repository OA_type: green _id: '21290' abstract: - lang: eng text: Gene duplication underlies evolutionary innovation, yet many paralogues remain highly similar, raising questions about their functional divergence and physiological relevance. The spliceosomal Sm core protein SNRPB and its mammalian-specific paralogue SNRPN share over 90% sequence identity, but their distinct expression patterns - SNRPB being ubiquitous and SNRPN confined to the brain - suggest specialized functions. Why mammals have two different spliceosomes has remained obscure. Here, we generated isogenic human cell lines expressing ectopically either SNRPB or SNRPN exclusively and found that SNRPN stabilizes transcripts involved in energy metabolism and mitochondrial function, leading to increased mitochondrial abundance and oxygen consumption. Despite similar spliceosomal interactomes, SNRPN more strongly associates with the PRMT5 methylosome complex and exhibits dynamic arginine methylation in its C-terminal region that is sensitive to translation inhibition and amino acid availability. The SNRPN-dependent transcriptome responds to translation inhibition by stabilizing long, intron-rich genes involved in amino acid and energy metabolism. Our findings reveal a nutrient-sensitive, methylation-dependent mechanism that differentiates the two paralogues. This suggests that SNRPN functions as a metabolic-specialized spliceosomal subunit thereby providing tissue-specific adaptation of RNA processing in mammals. acknowledgement: "We thank Oliver Mühlemann and Alex Hofer (University of Bern) for sharing SMG inhibitors\r\nand for their expertise in nonsense-mediated mRNA decay and Maria Hondele for critical\r\nreading of the manuscript draft. We also thank the IMB Genomics Core Facility for assistance\r\nwith library preparation and sequencing, Martin Möckel and the IMB Protein Production Core\r\nFacility for providing enzymes used in this work, Marton Gelleri together with the IMB\r\nMicroscopy Core Facility for support with microscopy and FRAP experiments, Jasmin Cartano\r\nfor proteomics sample processing and the IMB Flow Cytometry Core Facility for support. In\r\naddition, we thank the Imaging Core Facility (IMCF) and the FACS Core Facility at the\r\nBiozentrum, University of Basel, for technical assistance. CIKV acknowledges funding by the\r\nDeutsche Forschungsgemeinschaft (DFG, German Research Foundation) - Individual Grant\r\nProject no. 513744403, Scientific Network Grant Project no. 531902894, GRK2526 “Genevo”\r\n- Project no. 407023052”, GRK2859 (“4R”) - Project no. 491145305, Forschungsinitiative\r\nRheinland-Pfalz (ReALity), the EMBO Young Investigator Program (5795), institutional\r\nfunding from the Institute of Molecular Biology and funds from the Kanton Basel-Stadt and\r\nBasel-Land provided to the Biozentrum of the University Basel. J.H.G.F.G. was part of the\r\n‘Science of Healthy Ageing Research Programme’ (SHARP) initiative funded by RhinelandPalatinate’s Ministry of Science, Education and Culture. PR is funded by the Biozentrum PhD\r\nFellowships Program. MFB received financial support from the intramural High Potentials\r\nGrant program of the University Medical Center Mainz, Forschungsinitiative Rheinland-Pfalz\r\n(ReALity) and Stiftungen zugunsten der Medizinischen Fakultät der LMU Klinikum (26069).\r\nInstruments in the IMB core facilities were supported by funds from the DFG: Laser Scanning\r\nConfocal (Leica Stellaris 8 Falcon, funded by the DFG - Project #497669232), Orbitrap Astral system (funded by the DFG - Project #524805621) and BD LSRFortessa SOPR is funded by\r\nthe DFG - Project #210253511.\r\n" article_processing_charge: No author: - first_name: Feyza full_name: Polat Haas, Feyza last_name: Polat Haas - first_name: Ana full_name: Villalba Requena, Ana id: 68cb85a0-39f7-11eb-9559-9aaab4f6a247 last_name: Villalba Requena orcid: 0000-0002-5615-5277 - first_name: Polina full_name: Rusina, Polina last_name: Rusina - first_name: Anusha full_name: Gopalan, Anusha last_name: Gopalan - first_name: Hector full_name: Fritz, Hector last_name: Fritz - first_name: Azamat full_name: Akhmetkaliyev, Azamat last_name: Akhmetkaliyev - first_name: Frank full_name: Ruehle, Frank last_name: Ruehle - first_name: Anna full_name: Einsiedel, Anna last_name: Einsiedel - first_name: Anna full_name: Szczepinska, Anna last_name: Szczepinska - first_name: Fridolin full_name: Kielisch, Fridolin last_name: Kielisch - first_name: Jia-Xuan full_name: Chen, Jia-Xuan last_name: Chen - first_name: Susanne full_name: Nguyen, Susanne last_name: Nguyen - first_name: Thierry full_name: Schmidlin, Thierry last_name: Schmidlin - first_name: Simon full_name: Hippenmeyer, Simon id: 37B36620-F248-11E8-B48F-1D18A9856A87 last_name: Hippenmeyer orcid: 0000-0003-2279-1061 - first_name: M. Felicia full_name: Bailicata, M. Felicia last_name: Bailicata - first_name: Claudia Isabelle full_name: Keller Valsecchi, Claudia Isabelle last_name: Keller Valsecchi citation: ama: Polat Haas F, Villalba Requena A, Rusina P, et al. The splicing paralogues SNRPB and SNRPN control differential metabolic states. bioRxiv. doi:10.64898/2026.02.11.705284 apa: Polat Haas, F., Villalba Requena, A., Rusina, P., Gopalan, A., Fritz, H., Akhmetkaliyev, A., … Keller Valsecchi, C. I. (n.d.). The splicing paralogues SNRPB and SNRPN control differential metabolic states. bioRxiv. https://doi.org/10.64898/2026.02.11.705284 chicago: Polat Haas, Feyza, Ana Villalba Requena, Polina Rusina, Anusha Gopalan, Hector Fritz, Azamat Akhmetkaliyev, Frank Ruehle, et al. “The Splicing Paralogues SNRPB and SNRPN Control Differential Metabolic States.” BioRxiv, n.d. https://doi.org/10.64898/2026.02.11.705284. ieee: F. Polat Haas et al., “The splicing paralogues SNRPB and SNRPN control differential metabolic states.,” bioRxiv. . ista: Polat Haas F, Villalba Requena A, Rusina P, Gopalan A, Fritz H, Akhmetkaliyev A, Ruehle F, Einsiedel A, Szczepinska A, Kielisch F, Chen J-X, Nguyen S, Schmidlin T, Hippenmeyer S, Bailicata MF, Keller Valsecchi CI. The splicing paralogues SNRPB and SNRPN control differential metabolic states. bioRxiv, 10.64898/2026.02.11.705284. mla: Polat Haas, Feyza, et al. “The Splicing Paralogues SNRPB and SNRPN Control Differential Metabolic States.” BioRxiv, doi:10.64898/2026.02.11.705284. short: F. Polat Haas, A. Villalba Requena, P. Rusina, A. Gopalan, H. Fritz, A. Akhmetkaliyev, F. Ruehle, A. Einsiedel, A. Szczepinska, F. Kielisch, J.-X. Chen, S. Nguyen, T. Schmidlin, S. Hippenmeyer, M.F. Bailicata, C.I. Keller Valsecchi, BioRxiv (n.d.). date_created: 2026-02-17T11:35:59Z date_published: 2026-02-11T00:00:00Z date_updated: 2026-02-23T11:03:33Z day: '11' department: - _id: SiHi doi: 10.64898/2026.02.11.705284 language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.64898/2026.02.11.705284 month: '02' oa: 1 oa_version: Preprint publication: bioRxiv publication_status: submitted status: public title: The splicing paralogues SNRPB and SNRPN control differential metabolic states. type: preprint user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '21295' abstract: - lang: eng text: 'Depending on the type of flow, the transition to turbulence can take one of two forms: either turbulence arises from a sequence of instabilities or from the spatial proliferation of transiently chaotic domains, a process analogous to directed percolation. The former scenario is commonly referred to as a supercritical transition and frequently encountered in flows destabilized by body forces, whereas the latter subcritical transition is common in shear flows. Both cases are inherently continuous in a sense that the transformation from ordered laminar to fully turbulent fluid motion is only accomplished gradually with flow speed. Here we show that these established transition types do not account for the more general setting of shear flows subject to body forces. The combination of the two continuous scenarios leads to the attenuation of spatial coupling; with increasing forcing amplitude, the transition becomes increasingly sharp and eventually discontinuous. We argue that the suppression of laminar–turbulent coexistence and the approach towards a discontinuous phase transition potentially apply to a broad range of situations including flows subject to, for example, buoyancy, centrifugal or electromagnetic forces.' acknowledgement: The work was supported by the Simons Foundation (grant number 662960, to B.H.). Open access funding provided by Institute of Science and Technology (IST Austria). article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Bowen full_name: Yang, Bowen id: 71b6ff4b-15b2-11ec-abd3-aef6b028cf7e last_name: Yang orcid: 0000-0002-4843-6853 - first_name: Yi full_name: Zhuang, Yi id: 3677B57C-F248-11E8-B48F-1D18A9856A87 last_name: Zhuang - first_name: Gökhan full_name: Yalniz, Gökhan id: 66E74FA2-D8BF-11E9-8249-8DE2E5697425 last_name: Yalniz orcid: 0000-0002-8490-9312 - first_name: Mukund full_name: Vasudevan, Mukund id: 3C5A959A-F248-11E8-B48F-1D18A9856A87 last_name: Vasudevan - first_name: Elena full_name: Marensi, Elena id: 0BE7553A-1004-11EA-B805-18983DDC885E last_name: Marensi orcid: 0000-0001-7173-4923 - first_name: Björn full_name: Hof, Björn id: 3A374330-F248-11E8-B48F-1D18A9856A87 last_name: Hof orcid: 0000-0003-2057-2754 citation: ama: Yang B, Zhuang Y, Yalniz G, Vasudevan M, Marensi E, Hof B. Discontinuous transition to shear flow turbulence. Nature Physics. 2026. doi:10.1038/s41567-025-03166-3 apa: Yang, B., Zhuang, Y., Yalniz, G., Vasudevan, M., Marensi, E., & Hof, B. (2026). Discontinuous transition to shear flow turbulence. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-025-03166-3 chicago: Yang, Bowen, Yi Zhuang, Gökhan Yalniz, Mukund Vasudevan, Elena Marensi, and Björn Hof. “Discontinuous Transition to Shear Flow Turbulence.” Nature Physics. Springer Nature, 2026. https://doi.org/10.1038/s41567-025-03166-3. ieee: B. Yang, Y. Zhuang, G. Yalniz, M. Vasudevan, E. Marensi, and B. Hof, “Discontinuous transition to shear flow turbulence,” Nature Physics. Springer Nature, 2026. ista: Yang B, Zhuang Y, Yalniz G, Vasudevan M, Marensi E, Hof B. 2026. Discontinuous transition to shear flow turbulence. Nature Physics. mla: Yang, Bowen, et al. “Discontinuous Transition to Shear Flow Turbulence.” Nature Physics, Springer Nature, 2026, doi:10.1038/s41567-025-03166-3. short: B. Yang, Y. Zhuang, G. Yalniz, M. Vasudevan, E. Marensi, B. Hof, Nature Physics (2026). corr_author: '1' date_created: 2026-02-17T11:38:41Z date_published: 2026-02-17T00:00:00Z date_updated: 2026-02-23T11:36:46Z day: '17' ddc: - '532' department: - _id: GradSch - _id: BjHo doi: 10.1038/s41567-025-03166-3 external_id: arxiv: - '2311.11474' has_accepted_license: '1' language: - iso: eng month: '02' oa_version: Published Version project: - _id: 238598C6-32DE-11EA-91FC-C7463DDC885E grant_number: '662960' name: Revisiting the Turbulence Problem Using Statistical Mechanics publication: Nature Physics publication_identifier: eissn: - 1745-2481 issn: - 1745-2473 publication_status: epub_ahead publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Discontinuous transition to shear flow turbulence tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold PlanS_conform: '1' _id: '21340' abstract: - lang: eng text: Equilibrium quantum systems are often described by a gas of weakly interacting normal modes. Bringing such systems far from equilibrium, however, can drastically enhance mode-to-mode interactions. Understanding the resulting liquid is a fundamental question for quantum statistical mechanics and a practical question for engineering driven quantum devices. To tackle this question, we probe the non-equilibrium kinetics of one-dimensional plasmons in a long chain of Josephson junctions. We introduce multimode spectroscopy to controllably study the departure from equilibrium, witnessing the evolution from pairwise coupling between plasma modes at weak driving to dramatic, high-order, cascaded couplings at strong driving. Scaling to many-mode drives, we stimulate interactions between hundreds of modes, resulting in near-continuum internal dynamics. Imaging the resulting non-equilibrium plasmon populations, we then resolve the nonlocal redistribution of energy in the response to a weak perturbation—an explicit verification of the emergence of a strongly interacting, non-equilibrium liquid of plasmons. acknowledged_ssus: - _id: NanoFab - _id: M-Shop acknowledgement: We thank V. Vitelli, M. Fruchart, and A. Burshstein for helpful input. We acknowledge technical support from the Nanofabrication Facility and the MIBA machine shop at IST Austria. This research was supported in part by grant NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP), by the Austrian Science Fund (FWF) SFB F86, and by the NOMIS foundation. article_number: eady7222 article_processing_charge: Yes article_type: original arxiv: 1 author: - first_name: Anton full_name: Bubis, Anton id: 1f6212b5-f795-11ec-9c0c-de4780302890 last_name: Bubis - first_name: Lucia full_name: Vigliotti, Lucia id: 539e1e1a-e604-11ee-a1df-f02b018e5c8c last_name: Vigliotti - first_name: Maksym full_name: Serbyn, Maksym id: 47809E7E-F248-11E8-B48F-1D18A9856A87 last_name: Serbyn orcid: 0000-0002-2399-5827 - first_name: Andrew P full_name: Higginbotham, Andrew P id: 4AD6785A-F248-11E8-B48F-1D18A9856A87 last_name: Higginbotham orcid: 0000-0003-2607-2363 citation: ama: Bubis A, Vigliotti L, Serbyn M, Higginbotham AP. Non-equilibrium plasmon liquid in a Josephson junction chain. Science Advances. 2026;12(7). doi:10.1126/sciadv.ady7222 apa: Bubis, A., Vigliotti, L., Serbyn, M., & Higginbotham, A. P. (2026). Non-equilibrium plasmon liquid in a Josephson junction chain. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.ady7222 chicago: Bubis, Anton, Lucia Vigliotti, Maksym Serbyn, and Andrew P Higginbotham. “Non-Equilibrium Plasmon Liquid in a Josephson Junction Chain.” Science Advances. American Association for the Advancement of Science, 2026. https://doi.org/10.1126/sciadv.ady7222. ieee: A. Bubis, L. Vigliotti, M. Serbyn, and A. P. Higginbotham, “Non-equilibrium plasmon liquid in a Josephson junction chain,” Science Advances, vol. 12, no. 7. American Association for the Advancement of Science, 2026. ista: Bubis A, Vigliotti L, Serbyn M, Higginbotham AP. 2026. Non-equilibrium plasmon liquid in a Josephson junction chain. Science Advances. 12(7), eady7222. mla: Bubis, Anton, et al. “Non-Equilibrium Plasmon Liquid in a Josephson Junction Chain.” Science Advances, vol. 12, no. 7, eady7222, American Association for the Advancement of Science, 2026, doi:10.1126/sciadv.ady7222. short: A. Bubis, L. Vigliotti, M. Serbyn, A.P. Higginbotham, Science Advances 12 (2026). corr_author: '1' date_created: 2026-02-22T20:47:38Z date_published: 2026-02-13T00:00:00Z date_updated: 2026-02-24T07:25:34Z day: '13' ddc: - '530' department: - _id: MaSe - _id: AnHi - _id: GeKa doi: 10.1126/sciadv.ady7222 external_id: arxiv: - '2504.09721' file: - access_level: open_access checksum: 8402f322f8f0e858b1d9aac57e306e31 content_type: application/pdf creator: dernst date_created: 2026-02-24T07:23:32Z date_updated: 2026-02-24T07:23:32Z file_id: '21353' file_name: 2026_ScienceAdv_Bubis.pdf file_size: 2775975 relation: main_file success: 1 file_date_updated: 2026-02-24T07:23:32Z has_accepted_license: '1' intvolume: ' 12' issue: '7' language: - iso: eng month: '02' oa: 1 oa_version: Published Version publication: Science Advances publication_identifier: eissn: - 2375-2548 publication_status: published publisher: American Association for the Advancement of Science quality_controlled: '1' status: public title: Non-equilibrium plasmon liquid in a Josephson junction chain tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 12 year: '2026' ... --- OA_place: repository _id: '21360' acknowledged_ssus: - _id: LifeSc - _id: Bio acknowledgement: "I would like to acknowledge the Austrian Academy of Sciences (ÖAW) and European\r\nResearch Executive Agency (REA) for funding my research (DOC ÖAW Fellowship\r\n26130, Horizon Europe BOLERO Project 101060393). " alternative_title: - ISTA Thesis article_processing_charge: No author: - first_name: Stefan full_name: Riegler, Stefan id: FF6018E0-D806-11E9-8E43-0B14E6697425 last_name: Riegler orcid: 0000-0003-3413-1343 citation: ama: 'Riegler S. Root system plasticity under nutrient limitation : Investigating hormonal and molecular drivers in Arabidopsis thaliana and Coffea  species. 2026. doi:10.15479/AT-ISTA-21360' apa: 'Riegler, S. (2026). Root system plasticity under nutrient limitation : Investigating hormonal and molecular drivers in Arabidopsis thaliana and Coffea  species. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-21360' chicago: 'Riegler, Stefan. “Root System Plasticity under Nutrient Limitation : Investigating Hormonal and Molecular Drivers in Arabidopsis Thaliana and Coffea  Species.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-21360.' ieee: 'S. Riegler, “Root system plasticity under nutrient limitation : Investigating hormonal and molecular drivers in Arabidopsis thaliana and Coffea  species,” Institute of Science and Technology Austria, 2026.' ista: 'Riegler S. 2026. Root system plasticity under nutrient limitation : Investigating hormonal and molecular drivers in Arabidopsis thaliana and Coffea  species. Institute of Science and Technology Austria.' mla: 'Riegler, Stefan. Root System Plasticity under Nutrient Limitation : Investigating Hormonal and Molecular Drivers in Arabidopsis Thaliana and Coffea  Species. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-21360.' short: 'S. Riegler, Root System Plasticity under Nutrient Limitation : Investigating Hormonal and Molecular Drivers in Arabidopsis Thaliana and Coffea  Species, Institute of Science and Technology Austria, 2026.' corr_author: '1' date_created: 2026-02-27T09:08:14Z date_published: 2026-02-26T00:00:00Z date_updated: 2026-03-09T12:20:56Z day: '26' ddc: - '570' - '575' - '583' degree_awarded: PhD department: - _id: GradSch - _id: EvBe doi: 10.15479/AT-ISTA-21360 file: - access_level: closed checksum: 2f1f44e8536c2538f94a440217452c9f content_type: application/x-zip-compressed creator: sriegler date_created: 2026-03-02T10:59:50Z date_updated: 2026-03-02T10:59:50Z file_id: '21386' file_name: 2026_Riegler_Stefan_Thesis.zip file_size: 31430022 relation: source_file - access_level: closed checksum: 2e8dc39640bc26ae5684c944c619719b content_type: application/pdf creator: sriegler date_created: 2026-03-02T10:59:49Z date_updated: 2026-03-02T10:59:49Z embargo: 2027-02-27 embargo_to: open_access file_id: '21387' file_name: 2026_Riegler_Stefan_Thesis.pdf file_size: 11635090 relation: main_file file_date_updated: 2026-03-02T10:59:50Z has_accepted_license: '1' language: - iso: eng month: '02' oa_version: Published Version page: '185' project: - _id: 34afa094-11ca-11ed-8bc3-a375845a59fb grant_number: '101060393' name: Breeding for coffee and cocoa root resilience in low input farming systems based on improved rootstocks publication_identifier: issn: - 2663-337X publication_status: published publisher: Institute of Science and Technology Austria related_material: record: - id: '21363' relation: research_data status: public status: public supervisor: - first_name: Eva full_name: Benková, Eva id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 title: 'Root system plasticity under nutrient limitation : Investigating hormonal and molecular drivers in Arabidopsis thaliana and Coffea species' tmp: image: /images/cc_by_sa.png legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0) short: CC BY-SA (4.0) type: dissertation user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 year: '2026' ...