--- _id: '11761' abstract: - lang: eng text: We prove that in an undirected graph there are at most O(n²) cuts of size strictly less than of the size of the minimum cut. article_processing_charge: No article_type: original author: - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: David P. full_name: Williamson, David P. last_name: Williamson citation: ama: Henzinger MH, Williamson DP. On the number of small cuts in a graph. Information Processing Letters. 1996;59(1):41-44. doi:10.1016/0020-0190(96)00079-8 apa: Henzinger, M. H., & Williamson, D. P. (1996). On the number of small cuts in a graph. Information Processing Letters. Elsevier. https://doi.org/10.1016/0020-0190(96)00079-8 chicago: Henzinger, Monika H, and David P. Williamson. “On the Number of Small Cuts in a Graph.” Information Processing Letters. Elsevier, 1996. https://doi.org/10.1016/0020-0190(96)00079-8. ieee: M. H. Henzinger and D. P. Williamson, “On the number of small cuts in a graph,” Information Processing Letters, vol. 59, no. 1. Elsevier, pp. 41–44, 1996. ista: Henzinger MH, Williamson DP. 1996. On the number of small cuts in a graph. Information Processing Letters. 59(1), 41–44. mla: Henzinger, Monika H., and David P. Williamson. “On the Number of Small Cuts in a Graph.” Information Processing Letters, vol. 59, no. 1, Elsevier, 1996, pp. 41–44, doi:10.1016/0020-0190(96)00079-8. short: M.H. Henzinger, D.P. Williamson, Information Processing Letters 59 (1996) 41–44. date_created: 2022-08-08T11:49:48Z date_published: 1996-07-08T00:00:00Z date_updated: 2022-09-12T09:39:51Z day: '08' doi: 10.1016/0020-0190(96)00079-8 extern: '1' intvolume: ' 59' issue: '1' language: - iso: eng month: '07' oa_version: None page: 41-44 publication: Information Processing Letters publication_identifier: issn: - 0020-0190 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: On the number of small cuts in a graph type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 59 year: '1996' ... --- _id: '11804' abstract: - lang: eng text: "This paper shows how a general technique, called lock-step search, used in dynamic graph algorithms, can be used to improve the running time of two problems arising in program verification and communication protocol design.\r\n(1)We consider the nonemptiness problem for Streett automata: We are given a directed graph G = (V, E) with n = ¦V¦ and m = ¦E¦, and a collection of pairs of subsets of vertices, called Streett pairs,〈L i , U i 〉, i = 1.k. The question is whether G has a cycle (not necessarily simple) which, for each 1 ≤ i ≤ k, if it contains a vertex from L i then it also contains a vertex of U i . Let b=Σ i=1..k |L i |+|U i |. The previously best algorithm takes time O((m + b) min{n, k}). We present an algorithm that takes time \U0001D442(\U0001D45Amin{\U0001D45A\U0001D459\U0001D45C\U0001D454\U0001D45B,‾‾‾‾‾‾√\U0001D458,\U0001D45B}+\U0001D44F\U0001D45A\U0001D456\U0001D45B{\U0001D459\U0001D45C\U0001D454\U0001D45B,\U0001D458}).\r\n(2)In communication protocol pruning we are given a directed graph G = (V, E) with l special vertices. The problem is to efficiently maintain the strongly-connected components of the special vertices on a restricted set of edge deletions. Let m i be the number of edges in the strongly connected component of the ith special vertex. The previously best algorithm repeatedly recomputes the strongly-connected components which leads to a running time of O(Σ i m 2i). We present an algorithm with time \U0001D442(\U0001D459√∑\U0001D456\U0001D45A1.5\U0001D456)." alternative_title: - LNCS article_processing_charge: No author: - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Jan Arne full_name: Telle, Jan Arne last_name: Telle citation: ama: 'Henzinger MH, Telle JA. Faster algorithms for the nonemptiness of streett automata and for communication protocol pruning. In: 5th Scandinavian Workshop on Algorithm Theory. Vol 1097. Springer Nature; 1996:16–27. doi:10.1007/3-540-61422-2_117' apa: 'Henzinger, M. H., & Telle, J. A. (1996). Faster algorithms for the nonemptiness of streett automata and for communication protocol pruning. In 5th Scandinavian Workshop on Algorithm Theory (Vol. 1097, pp. 16–27). Reykjavik, Iceland: Springer Nature. https://doi.org/10.1007/3-540-61422-2_117' chicago: Henzinger, Monika H, and Jan Arne Telle. “Faster Algorithms for the Nonemptiness of Streett Automata and for Communication Protocol Pruning.” In 5th Scandinavian Workshop on Algorithm Theory, 1097:16–27. Springer Nature, 1996. https://doi.org/10.1007/3-540-61422-2_117. ieee: M. H. Henzinger and J. A. Telle, “Faster algorithms for the nonemptiness of streett automata and for communication protocol pruning,” in 5th Scandinavian Workshop on Algorithm Theory, Reykjavik, Iceland, 1996, vol. 1097, pp. 16–27. ista: 'Henzinger MH, Telle JA. 1996. Faster algorithms for the nonemptiness of streett automata and for communication protocol pruning. 5th Scandinavian Workshop on Algorithm Theory. SWAT: Scandinavian Workshop on Algorithm Theory, LNCS, vol. 1097, 16–27.' mla: Henzinger, Monika H., and Jan Arne Telle. “Faster Algorithms for the Nonemptiness of Streett Automata and for Communication Protocol Pruning.” 5th Scandinavian Workshop on Algorithm Theory, vol. 1097, Springer Nature, 1996, pp. 16–27, doi:10.1007/3-540-61422-2_117. short: M.H. Henzinger, J.A. Telle, in:, 5th Scandinavian Workshop on Algorithm Theory, Springer Nature, 1996, pp. 16–27. conference: end_date: 1996-07-05 location: Reykjavik, Iceland name: 'SWAT: Scandinavian Workshop on Algorithm Theory' start_date: 1996-07-03 date_created: 2022-08-11T13:42:42Z date_published: 1996-07-01T00:00:00Z date_updated: 2023-02-14T07:52:17Z day: '01' doi: 10.1007/3-540-61422-2_117 extern: '1' intvolume: ' 1097' language: - iso: eng month: '07' oa_version: None page: 16–27 publication: 5th Scandinavian Workshop on Algorithm Theory publication_identifier: eisbn: - '9783540685296' eissn: - 1611-3349 isbn: - '9783540614227' issn: - 0302-9743 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Faster algorithms for the nonemptiness of streett automata and for communication protocol pruning type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 1097 year: '1996' ... --- _id: '11910' abstract: - lang: eng text: "We state a new sampling lemma and use it to improve the running time of dynamic graph algorithms.\r\n\r\nFor the dynamic connectivity problem the previously best randomized algorithm takes expected time O(log3 n) per update, amortized over Ω(m) updates. Using the new sampling lemma, we improve its running time to O(log2 n). There exists a lower bound in the cell probe model for the time per operation of Ω(log n/ log log n) for this problem.\r\n\r\nSimilarly improved running times are achieved for 2-edge connectivity, k-weight minimum spanning tree, and bipartiteness." alternative_title: - LNCS article_processing_charge: No author: - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Mikkel full_name: Thorup, Mikkel last_name: Thorup citation: ama: 'Henzinger MH, Thorup M. Improved sampling with applications to dynamic graph algorithms. In: 23rd International Colloquium on Automata, Languages, and Programming. Vol 1099. Springer Nature; 1996:290-299. doi:10.1007/3-540-61440-0_136' apa: 'Henzinger, M. H., & Thorup, M. (1996). Improved sampling with applications to dynamic graph algorithms. In 23rd International Colloquium on Automata, Languages, and Programming (Vol. 1099, pp. 290–299). Paderborn, Germany: Springer Nature. https://doi.org/10.1007/3-540-61440-0_136' chicago: Henzinger, Monika H, and Mikkel Thorup. “Improved Sampling with Applications to Dynamic Graph Algorithms.” In 23rd International Colloquium on Automata, Languages, and Programming, 1099:290–99. Springer Nature, 1996. https://doi.org/10.1007/3-540-61440-0_136. ieee: M. H. Henzinger and M. Thorup, “Improved sampling with applications to dynamic graph algorithms,” in 23rd International Colloquium on Automata, Languages, and Programming, Paderborn, Germany, 1996, vol. 1099, pp. 290–299. ista: 'Henzinger MH, Thorup M. 1996. Improved sampling with applications to dynamic graph algorithms. 23rd International Colloquium on Automata, Languages, and Programming. ICALP: International Colloquium on Automata, Languages, and Programming, LNCS, vol. 1099, 290–299.' mla: Henzinger, Monika H., and Mikkel Thorup. “Improved Sampling with Applications to Dynamic Graph Algorithms.” 23rd International Colloquium on Automata, Languages, and Programming, vol. 1099, Springer Nature, 1996, pp. 290–99, doi:10.1007/3-540-61440-0_136. short: M.H. Henzinger, M. Thorup, in:, 23rd International Colloquium on Automata, Languages, and Programming, Springer Nature, 1996, pp. 290–299. conference: end_date: 1996-07-12 location: Paderborn, Germany name: 'ICALP: International Colloquium on Automata, Languages, and Programming' start_date: 1996-07-08 date_created: 2022-08-18T06:42:24Z date_published: 1996-07-01T00:00:00Z date_updated: 2023-02-14T07:57:14Z day: '01' doi: 10.1007/3-540-61440-0_136 extern: '1' intvolume: ' 1099' language: - iso: eng month: '07' oa_version: None page: 290-299 publication: 23rd International Colloquium on Automata, Languages, and Programming publication_identifier: eisbn: - '9783540685807' eissn: - 1611-3349 isbn: - '9783540614401' issn: - 0302-9743 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Improved sampling with applications to dynamic graph algorithms type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 1099 year: '1996' ... --- _id: '11927' abstract: - lang: eng text: "We are given a set 7 = {Tl , Tz, . . . , Tk} of rooted binary trees, each Ti leaf-labeled by a subset L(x) c {1,2 )...) n}. IfT is a tree on {1,2, . . , n}, we let T]L denote the subtree of T induced by the nodes of L and all their ancestors. The consensus tree problem asks whether there exists a tree T* such that for every I, T’ IC(Ti) is homeomorphic to Ti. We present algorithms which test if a given set of trees has a consensus tree and if so, construct one. The deterministic algorithm takes time min{O(mn’/‘), O(m + n2 logn)}, where m = Ci IZl and uses linear space. The randomized algorithm takes\r\ntime O(m log3 n) and uses linear space. The previous best for this problem was an 1981 O(mn) algorithm by Aho et al. Our faster deterministic algorithm uses a new efficient algorithm for the following interesting dynamic graph problem: Given a graph G with n nodes and m edges and a sequence of b batches of one or more edge deletions, then after each batch, either find a new component that has just been created or determine that there is no such component. For this\r\nproblem, we have a simple algorithm with running time O(n2 log n + be min{ n2, m log n}), where be is the number of batches which do not result in a new component. For our particular application, bc 5 1. If all edges are deleted, then the best previously known deterministic algorithm requires time O(mJ;ii) to solve this problem. computational evolutionary biology. The first application is in the problem of inferring consensus of trees when there can be disagreement[l6]. There have, been several models suggested for this problem[2, 3, 4, 8, ?, 11, 17, 181, of which one is called the Local Consensus Tree[l5]. The local consensus tree model presumes that the user provides a local consensus rule which determines the form of the output tree on (perhaps) each triple of leaves, and the objective is to determine whether a tree exists which is consistent with each of the constraints. We will show that we can construct the local consensus tree of k trees on n species in O(kn3) time, improving on the O(lcn3 + n”) running time if we use the Aho et al algorithm. The second application is a\r\nheuristic for constructing the maximum likelihood tree based upon combining solutions to small subproblems.\r\nThis is a simple and yet potentially significantly interesting approach to the evolutionary tree construction\r\nproblem. " article_processing_charge: No author: - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Valerie full_name: King, Valerie last_name: King - first_name: Tandy full_name: Warnow, Tandy last_name: Warnow citation: ama: 'Henzinger MH, King V, Warnow T. Constructing a tree from homeomorphic subtrees, with applications to computational evolutionary biology. In: 7th Annual ACM-SIAM Symposium on Discrete Algorithms. Society for Industrial and Applied Mathematics; 1996:333-340.' apa: 'Henzinger, M. H., King, V., & Warnow, T. (1996). Constructing a tree from homeomorphic subtrees, with applications to computational evolutionary biology. In 7th Annual ACM-SIAM Symposium on Discrete Algorithms (pp. 333–340). Atlanta, GA, United States: Society for Industrial and Applied Mathematics.' chicago: Henzinger, Monika H, Valerie King, and Tandy Warnow. “Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology.” In 7th Annual ACM-SIAM Symposium on Discrete Algorithms, 333–40. Society for Industrial and Applied Mathematics, 1996. ieee: M. H. Henzinger, V. King, and T. Warnow, “Constructing a tree from homeomorphic subtrees, with applications to computational evolutionary biology,” in 7th Annual ACM-SIAM Symposium on Discrete Algorithms, Atlanta, GA, United States, 1996, pp. 333–340. ista: 'Henzinger MH, King V, Warnow T. 1996. Constructing a tree from homeomorphic subtrees, with applications to computational evolutionary biology. 7th Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms, 333–340.' mla: Henzinger, Monika H., et al. “Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology.” 7th Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 1996, pp. 333–40. short: M.H. Henzinger, V. King, T. Warnow, in:, 7th Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 1996, pp. 333–340. conference: end_date: 1996-01-30 location: Atlanta, GA, United States name: 'SODA: Symposium on Discrete Algorithms' start_date: 1996-01-28 date_created: 2022-08-19T06:57:47Z date_published: 1996-01-28T00:00:00Z date_updated: 2023-02-21T16:24:53Z day: '28' extern: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://dl.acm.org/doi/10.5555/313852.314080 month: '01' oa: 1 oa_version: Published Version page: 333 -340 publication: 7th Annual ACM-SIAM Symposium on Discrete Algorithms publication_identifier: isbn: - '0898713668' publication_status: published publisher: Society for Industrial and Applied Mathematics quality_controlled: '1' related_material: record: - id: '11679' relation: later_version status: public scopus_import: '1' status: public title: Constructing a tree from homeomorphic subtrees, with applications to computational evolutionary biology type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '1996' ... --- _id: '1942' alternative_title: - 'Photosynthesis: from light to biosphere' author: - first_name: Leonid A full_name: Leonid Sazanov id: 338D39FE-F248-11E8-B48F-1D18A9856A87 last_name: Sazanov orcid: 0000-0002-0977-7989 - first_name: P full_name: Burrows, P last_name: Burrows - first_name: P J full_name: Nixon, P J last_name: Nixon citation: ama: 'Sazanov LA, Burrows P, Nixon PJ. Presence of a large protein complex containing the ndhK gene product and possessing NADH-specific dehydrogenase activity in thylakoid membranes of higher plant chloroplasts. In: Vol 2. Kluwer; 1996:705-708.' apa: 'Sazanov, L. A., Burrows, P., & Nixon, P. J. (1996). Presence of a large protein complex containing the ndhK gene product and possessing NADH-specific dehydrogenase activity in thylakoid membranes of higher plant chloroplasts (Vol. 2, pp. 705–708). Presented at the IPC: International Photosynthesis Congress, Kluwer.' chicago: Sazanov, Leonid A, P Burrows, and P J Nixon. “Presence of a Large Protein Complex Containing the NdhK Gene Product and Possessing NADH-Specific Dehydrogenase Activity in Thylakoid Membranes of Higher Plant Chloroplasts,” 2:705–8. Kluwer, 1996. ieee: 'L. A. Sazanov, P. Burrows, and P. J. Nixon, “Presence of a large protein complex containing the ndhK gene product and possessing NADH-specific dehydrogenase activity in thylakoid membranes of higher plant chloroplasts,” presented at the IPC: International Photosynthesis Congress, 1996, vol. 2, pp. 705–708.' ista: 'Sazanov LA, Burrows P, Nixon PJ. 1996. Presence of a large protein complex containing the ndhK gene product and possessing NADH-specific dehydrogenase activity in thylakoid membranes of higher plant chloroplasts. IPC: International Photosynthesis Congress, Photosynthesis: from light to biosphere, vol. 2, 705–708.' mla: Sazanov, Leonid A., et al. Presence of a Large Protein Complex Containing the NdhK Gene Product and Possessing NADH-Specific Dehydrogenase Activity in Thylakoid Membranes of Higher Plant Chloroplasts. Vol. 2, Kluwer, 1996, pp. 705–08. short: L.A. Sazanov, P. Burrows, P.J. Nixon, in:, Kluwer, 1996, pp. 705–708. conference: name: 'IPC: International Photosynthesis Congress' date_created: 2018-12-11T11:54:50Z date_published: 1996-01-01T00:00:00Z date_updated: 2021-01-12T06:54:14Z day: '01' extern: 1 intvolume: ' 2' month: '01' page: 705 - 708 publication_status: published publisher: Kluwer publist_id: '5143' quality_controlled: 0 status: public title: Presence of a large protein complex containing the ndhK gene product and possessing NADH-specific dehydrogenase activity in thylakoid membranes of higher plant chloroplasts type: conference volume: 2 year: '1996' ... --- _id: '1952' abstract: - lang: eng text: Two strains of Rhodospirillum rubrum were constructed in which, by a gene dosage effect, the transhydrogenase activity of isolated chromatophores was increased 7-10-fold and 15-20-fold, respectively. The H+/H- ratio (the ratio of protons translocated per hydride ion equivalent transferred from NADPH to an NAD+ analogue, acetyl pyridine adenine dinucleotide), determined by a spectroscopic technique, was approximately 1.0 for chromatophores from the over-expressing strains, but was only approximately 0.6 for wild-type chromatophores. Highly-coupled proteoliposomes were prepared containing purified transhydrogenase from beef-heart mitochondria. Using the same technique, the H+/H- ratio was close to 1.0 for these proteoliposomes. It is suggested that the mechanistic H+/H- ratio is indeed unity, but that a low ratio is obtained in wild-type chromatophores because of inhomogeneity in the vesicle population. acknowledgement: L.A.S. would like to thank the Wellcome Trust, and T.B., the Biotechnology and Biological Sciences Research Council, for financial support. We are very grateful to Nick Cotton for helpful advice. article_processing_charge: No article_type: original author: - first_name: Tania full_name: Bizouarn, Tania last_name: Bizouarn - first_name: Leonid A full_name: Sazanov, Leonid A id: 338D39FE-F248-11E8-B48F-1D18A9856A87 last_name: Sazanov orcid: 0000-0002-0977-7989 - first_name: Sébastien full_name: Aubourg, Sébastien last_name: Aubourg - first_name: Julie full_name: Jackson, Julie last_name: Jackson citation: ama: Bizouarn T, Sazanov LA, Aubourg S, Jackson J. Estimation of the H+/H- ratio of the reaction catalysed by the nicotinamide nucleotide transhydrogenase in chromatophores from over-expressing strains of Rhodospirillum rubrum and in liposomes inlaid with the purified bovine enzyme. Biochimica et Biophysica Acta - Bioenergetics. 1996;1273(1):4-12. doi:10.1016/0005-2728(95)00125-5 apa: Bizouarn, T., Sazanov, L. A., Aubourg, S., & Jackson, J. (1996). Estimation of the H+/H- ratio of the reaction catalysed by the nicotinamide nucleotide transhydrogenase in chromatophores from over-expressing strains of Rhodospirillum rubrum and in liposomes inlaid with the purified bovine enzyme. Biochimica et Biophysica Acta - Bioenergetics. Elsevier. https://doi.org/10.1016/0005-2728(95)00125-5 chicago: Bizouarn, Tania, Leonid A Sazanov, Sébastien Aubourg, and Julie Jackson. “Estimation of the H+/H- Ratio of the Reaction Catalysed by the Nicotinamide Nucleotide Transhydrogenase in Chromatophores from over-Expressing Strains of Rhodospirillum Rubrum and in Liposomes Inlaid with the Purified Bovine Enzyme.” Biochimica et Biophysica Acta - Bioenergetics. Elsevier, 1996. https://doi.org/10.1016/0005-2728(95)00125-5. ieee: T. Bizouarn, L. A. Sazanov, S. Aubourg, and J. Jackson, “Estimation of the H+/H- ratio of the reaction catalysed by the nicotinamide nucleotide transhydrogenase in chromatophores from over-expressing strains of Rhodospirillum rubrum and in liposomes inlaid with the purified bovine enzyme,” Biochimica et Biophysica Acta - Bioenergetics, vol. 1273, no. 1. Elsevier, pp. 4–12, 1996. ista: Bizouarn T, Sazanov LA, Aubourg S, Jackson J. 1996. Estimation of the H+/H- ratio of the reaction catalysed by the nicotinamide nucleotide transhydrogenase in chromatophores from over-expressing strains of Rhodospirillum rubrum and in liposomes inlaid with the purified bovine enzyme. Biochimica et Biophysica Acta - Bioenergetics. 1273(1), 4–12. mla: Bizouarn, Tania, et al. “Estimation of the H+/H- Ratio of the Reaction Catalysed by the Nicotinamide Nucleotide Transhydrogenase in Chromatophores from over-Expressing Strains of Rhodospirillum Rubrum and in Liposomes Inlaid with the Purified Bovine Enzyme.” Biochimica et Biophysica Acta - Bioenergetics, vol. 1273, no. 1, Elsevier, 1996, pp. 4–12, doi:10.1016/0005-2728(95)00125-5. short: T. Bizouarn, L.A. Sazanov, S. Aubourg, J. Jackson, Biochimica et Biophysica Acta - Bioenergetics 1273 (1996) 4–12. date_created: 2018-12-11T11:54:53Z date_published: 1996-01-11T00:00:00Z date_updated: 2022-08-16T12:35:22Z day: '11' doi: 10.1016/0005-2728(95)00125-5 extern: '1' external_id: pmid: - '8573594 ' intvolume: ' 1273' issue: '1' language: - iso: eng month: '01' oa_version: None page: 4 - 12 pmid: 1 publication: Biochimica et Biophysica Acta - Bioenergetics publication_identifier: issn: - 0005-2728 publication_status: published publisher: Elsevier publist_id: '5132' quality_controlled: '1' status: public title: Estimation of the H+/H- ratio of the reaction catalysed by the nicotinamide nucleotide transhydrogenase in chromatophores from over-expressing strains of Rhodospirillum rubrum and in liposomes inlaid with the purified bovine enzyme type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 1273 year: '1996' ... --- _id: '1951' article_processing_charge: No article_type: original author: - first_name: Leonid A full_name: Sazanov, Leonid A id: 338D39FE-F248-11E8-B48F-1D18A9856A87 last_name: Sazanov orcid: 0000-0002-0977-7989 - first_name: Paul full_name: Burrows, Paul last_name: Burrows - first_name: Peter full_name: Nixon, Peter last_name: Nixon citation: ama: Sazanov LA, Burrows P, Nixon P. Detection and characterization of a complex I-like NADH-specific dehydrogenase from pea thylakoids. Biochemical Society Transactions. 1996;24(3):739-743. doi:10.1042/bst0240739 apa: Sazanov, L. A., Burrows, P., & Nixon, P. (1996). Detection and characterization of a complex I-like NADH-specific dehydrogenase from pea thylakoids. Biochemical Society Transactions. Portland Press. https://doi.org/10.1042/bst0240739 chicago: Sazanov, Leonid A, Paul Burrows, and Peter Nixon. “Detection and Characterization of a Complex I-like NADH-Specific Dehydrogenase from Pea Thylakoids.” Biochemical Society Transactions. Portland Press, 1996. https://doi.org/10.1042/bst0240739. ieee: L. A. Sazanov, P. Burrows, and P. Nixon, “Detection and characterization of a complex I-like NADH-specific dehydrogenase from pea thylakoids,” Biochemical Society Transactions, vol. 24, no. 3. Portland Press, pp. 739–743, 1996. ista: Sazanov LA, Burrows P, Nixon P. 1996. Detection and characterization of a complex I-like NADH-specific dehydrogenase from pea thylakoids. Biochemical Society Transactions. 24(3), 739–743. mla: Sazanov, Leonid A., et al. “Detection and Characterization of a Complex I-like NADH-Specific Dehydrogenase from Pea Thylakoids.” Biochemical Society Transactions, vol. 24, no. 3, Portland Press, 1996, pp. 739–43, doi:10.1042/bst0240739. short: L.A. Sazanov, P. Burrows, P. Nixon, Biochemical Society Transactions 24 (1996) 739–743. date_created: 2018-12-11T11:54:53Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-08-16T08:25:02Z day: '01' doi: 10.1042/bst0240739 extern: '1' external_id: pmid: - '8878837' intvolume: ' 24' issue: '3' language: - iso: eng month: '01' oa_version: None page: 739 - 743 pmid: 1 publication: Biochemical Society Transactions publication_identifier: issn: - 0300-5127 publication_status: published publisher: Portland Press publist_id: '5131' quality_controlled: '1' scopus_import: '1' status: public title: Detection and characterization of a complex I-like NADH-specific dehydrogenase from pea thylakoids type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 24 year: '1996' ... --- _id: '2492' abstract: - lang: eng text: The metabotropic glutamate receptor subtypes mGluR2 and mGluR5, which are thought to be coupled respectively to the inhibitory cyclic adenosine monophosphate (cAMP) cascade and the phosphatidylinositol hydrolysis/Ca2+ cascade, are known to be expressed on Golgi cells in the granular layer of the rat cerebellar cortex. In the present immunohistochemical study with a monoclonal antibody against mGluR2 and a polyclonal antibody for mGluR5, we examined whether or not mGluR2- and mGluR5-like immunoreactivities were both present in single Golgi cells in the rat cerebellar cortex. In double immunofluorescence histochemistry, no Golgi cells showed mGluR2- and mGluR5-like immunoreactivities simultaneously. Of the total number of Golgi cells immunoreactive for mGluR2 or mGluR5, about 90% were mGluR2-like immunoreactive, and about 10% were mGluR5-like immunoreactive. Golgi cells with mGluR2-like immunoreactivity were distributed evenly in the granular layer of all the cerebellar regions, while those with mGluR5-like immunoreactivity were distributed more frequently in the I, II, VII-X lobules of the vermis and the copula pyramidis of the hemisphere than in other cerebellar regions. The results indicate that Golgi cells containing mGluR2 are segregated from those possessing mGluR5. These two populations of Golgi cells, each equipped with a different metabolic glutamate receptor coupled to a different intracellular signal transduction system, may play different roles in the glutamatergic neuronal circuits in the cerebellar cortex. acknowledgement: We thank Mr Akira Uesugi for expert photographic assistance. We also thank Dr Jeremy M. Henley for a critical reading of the manuscript. article_processing_charge: No article_type: original author: - first_name: Akio full_name: Neki, Akio last_name: Neki - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Takeshi full_name: Kaneko, Takeshi last_name: Kaneko - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Shigetada full_name: Nakanishi, Shigetada last_name: Nakanishi - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: Neki A, Ohishi H, Kaneko T, Shigemoto R, Nakanishi S, Mizuno N. Metabotropic glutamate receptors mGluR2 and mGluR5 are expressed in two non-overlapping populations of Golgi cells in the rat cerebellum. Neuroscience. 1996;75(3):815-826. doi:10.1016/0306-4522(96)00316-8 apa: Neki, A., Ohishi, H., Kaneko, T., Shigemoto, R., Nakanishi, S., & Mizuno, N. (1996). Metabotropic glutamate receptors mGluR2 and mGluR5 are expressed in two non-overlapping populations of Golgi cells in the rat cerebellum. Neuroscience. Elsevier. https://doi.org/10.1016/0306-4522(96)00316-8 chicago: Neki, Akio, Hitoshi Ohishi, Takeshi Kaneko, Ryuichi Shigemoto, Shigetada Nakanishi, and Noboru Mizuno. “Metabotropic Glutamate Receptors MGluR2 and MGluR5 Are Expressed in Two Non-Overlapping Populations of Golgi Cells in the Rat Cerebellum.” Neuroscience. Elsevier, 1996. https://doi.org/10.1016/0306-4522(96)00316-8. ieee: A. Neki, H. Ohishi, T. Kaneko, R. Shigemoto, S. Nakanishi, and N. Mizuno, “Metabotropic glutamate receptors mGluR2 and mGluR5 are expressed in two non-overlapping populations of Golgi cells in the rat cerebellum,” Neuroscience, vol. 75, no. 3. Elsevier, pp. 815–826, 1996. ista: Neki A, Ohishi H, Kaneko T, Shigemoto R, Nakanishi S, Mizuno N. 1996. Metabotropic glutamate receptors mGluR2 and mGluR5 are expressed in two non-overlapping populations of Golgi cells in the rat cerebellum. Neuroscience. 75(3), 815–826. mla: Neki, Akio, et al. “Metabotropic Glutamate Receptors MGluR2 and MGluR5 Are Expressed in Two Non-Overlapping Populations of Golgi Cells in the Rat Cerebellum.” Neuroscience, vol. 75, no. 3, Elsevier, 1996, pp. 815–26, doi:10.1016/0306-4522(96)00316-8. short: A. Neki, H. Ohishi, T. Kaneko, R. Shigemoto, S. Nakanishi, N. Mizuno, Neuroscience 75 (1996) 815–826. date_created: 2018-12-11T11:57:59Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-12T12:11:03Z day: '01' doi: 10.1016/0306-4522(96)00316-8 extern: '1' external_id: pmid: - '8951875' intvolume: ' 75' issue: '3' language: - iso: eng month: '12' oa_version: None page: 815 - 826 pmid: 1 publication: Neuroscience publication_identifier: issn: - 0306-4522 publication_status: published publisher: Elsevier publist_id: '4409' quality_controlled: '1' scopus_import: '1' status: public title: Metabotropic glutamate receptors mGluR2 and mGluR5 are expressed in two non-overlapping populations of Golgi cells in the rat cerebellum type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 75 year: '1996' ... --- _id: '2564' abstract: - lang: eng text: The distribution of the neuromedin K receptor (NK3; NKR) in the central nervous system was investigated in the adult rat by using in situ hybridization and immunohistochemical techniques. The rabbit anti-NKR antibody was raised against a bacterial fusion protein containing a C- terminal portion of NKR and affinity purified with a Sepharose 4B column conjugated to the fusion protein. Immunoblot analysis was performed to test the reactivity and specificity of the antibody. Crude membrane was prepared from cDNA-transfected Chinese hamster ovary (CHO) cells expressing each of the rat NKR, substance P receptor (NK1; SPR), and substance K receptor (NK2; SKR) and from the hypothalamus, cerebral cortex, and cerebellum. Immunoreactive bands were observed specifically in the NKR-CHO cells, hypothalamus, and cerebral cortex but not in the SPR- or SKR-CHO cells, nor in the cerebellum. Molecular weights of the immunoreactive bands ranged from 73 to 89 kDa and from 59 to 83 kDa in the NKR-CHO cells and tissues, respectively. The distribution of NKR-like immunoreactivity coincided with that of NKR mRNA. The expression of NKR was indicated on neuronal cell bodies and dendrites. NKR was found to be expressed intensely or moderately in neurons in the glomerular and granule cell layers of the main olfactory bulb; glomerular and mitral cell layers of the accessory olfactory bulb; layers IV and V of the cerebral neocortex; medial septal nucleus; nucleus of the diagonal band; bed nucleus of the stria terminalis; globus pallidus; ventral pallidum; paraventricular nucleus; supraoptic nucleus; zona incerta; dorsal, lateral, and posterior hypothalamic areas; amygdaloid nuclei; medial habenular nucleus; ventral tegmental area; midbrain periaqueductal gray; interpeduncular nuclei; substantia nigra pars compacta; linear, median, dorsal, and pontine raphe nuclei; posteromedial tegmental nucleus; sphenoid nucleus; nucleus of the solitary tract; intermediate and rostroventrolateral reticular nuclei; and lamina II of the caudal spinal trigeminal nucleus and spinal dorsal horn. These findings are discussed in relation to the physiological functions associated with neuromedin K. acknowledgement: 'We are grateful for the photographic help of Mr. A. Uesugi and the support of Drs. Satoru Fukuchi, Ritsu Hayashi, Sozaburo Hayashi, Mizuho Katsurada, Yutaka Kitani, Keiko Kumagai, Toshihiko Kuroda, Hiroshi Matsu- bara, Hiroshi Matsushima, Chisato Minakuchi, Gonpei Niwa, Hajime Oda, Masahiko Ohbayashi, Sei-ichi Ohbayashi, Hiroyasu Ohtsuka, Shigeo Tamaki, Eizo Watanabe, Kazuo Yoshino, and Toshiaki Yoshino. This work was supported in part by Grants-in-Aid for Special Research on Priority areas 05267104, Scientific Research (B) 05454658, and Scientific Research (C) 06680735 from the Ministry of Education, Science and Culture of Japan. ' article_processing_charge: No article_type: original author: - first_name: Yu full_name: Ding, Yu last_name: Ding - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Masahiko full_name: Takada, Masahiko last_name: Takada - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Shigetada full_name: Nakanishi, Shigetada last_name: Nakanishi - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: Ding Y, Shigemoto R, Takada M, Ohishi H, Nakanishi S, Mizuno N. Localization of the neuromedin K receptor (NK3) in the central nervous system of the rat. Journal of Comparative Neurology. 1996;364(2):290-310. doi:10.1002/(SICI)1096-9861(19960108)364:2&lt;290::AID-CNE8&gt;3.0.CO;2-0 apa: Ding, Y., Shigemoto, R., Takada, M., Ohishi, H., Nakanishi, S., & Mizuno, N. (1996). Localization of the neuromedin K receptor (NK3) in the central nervous system of the rat. Journal of Comparative Neurology. Wiley-Blackwell. https://doi.org/10.1002/(SICI)1096-9861(19960108)364:2&lt;290::AID-CNE8&gt;3.0.CO;2-0 chicago: Ding, Yu, Ryuichi Shigemoto, Masahiko Takada, Hitoshi Ohishi, Shigetada Nakanishi, and Noboru Mizuno. “Localization of the Neuromedin K Receptor (NK3) in the Central Nervous System of the Rat.” Journal of Comparative Neurology. Wiley-Blackwell, 1996. https://doi.org/10.1002/(SICI)1096-9861(19960108)364:2&lt;290::AID-CNE8&gt;3.0.CO;2-0. ieee: Y. Ding, R. Shigemoto, M. Takada, H. Ohishi, S. Nakanishi, and N. Mizuno, “Localization of the neuromedin K receptor (NK3) in the central nervous system of the rat,” Journal of Comparative Neurology, vol. 364, no. 2. Wiley-Blackwell, pp. 290–310, 1996. ista: Ding Y, Shigemoto R, Takada M, Ohishi H, Nakanishi S, Mizuno N. 1996. Localization of the neuromedin K receptor (NK3) in the central nervous system of the rat. Journal of Comparative Neurology. 364(2), 290–310. mla: Ding, Yu, et al. “Localization of the Neuromedin K Receptor (NK3) in the Central Nervous System of the Rat.” Journal of Comparative Neurology, vol. 364, no. 2, Wiley-Blackwell, 1996, pp. 290–310, doi:10.1002/(SICI)1096-9861(19960108)364:2&lt;290::AID-CNE8&gt;3.0.CO;2-0. short: Y. Ding, R. Shigemoto, M. Takada, H. Ohishi, S. Nakanishi, N. Mizuno, Journal of Comparative Neurology 364 (1996) 290–310. date_created: 2018-12-11T11:58:25Z date_published: 1996-01-08T00:00:00Z date_updated: 2022-08-12T09:48:24Z day: '08' doi: 10.1002/(SICI)1096-9861(19960108)364:2<290::AID-CNE8>3.0.CO;2-0 extern: '1' external_id: pmid: - '8788251 ' intvolume: ' 364' issue: '2' language: - iso: eng month: '01' oa_version: None page: 290 - 310 pmid: 1 publication: Journal of Comparative Neurology publication_identifier: issn: - 0021-9967 publication_status: published publisher: Wiley-Blackwell publist_id: '4334' quality_controlled: '1' scopus_import: '1' status: public title: Localization of the neuromedin K receptor (NK3) in the central nervous system of the rat type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 364 year: '1996' ... --- _id: '2566' abstract: - lang: eng text: The present study indicated presynaptic localization of a metabotropic glutamate receptor, mGluR8, in projection neurons of the main olfactory bulb of rat. An antibody was produced by using a peptide corresponding to C-terminal 23 amino acids of mouse mGluR8. It was confirmed that the C-terminal 23 amino acids of rat mGluR8 were the same as those of mouse mGluR8 except for one, and that the antibody specifically recognized mGluR8 in the rat rhinencephalon. In layer Ia of the piriform cortex (a target area of projection fibers from the main olfactory bulb), mGluR8-like immunoreactivity (mGluR8-LI) was reduced after transection of the lateral olfactory tract, and mGluR8-LI was observed in axon terminals which were filled with round synaptic vesicles and made asymmetric synapses with dendritic spines. acknowledgement: 'We are grateful to Mr. Akira Uesugi for photographic help, and to Dr. Toshikazu Fukui, Dainippon Pharmaceutical Co. Ltd. [k)r technical assistance. ' article_processing_charge: No article_type: original author: - first_name: Ayae full_name: Kinoshita, Ayae last_name: Kinoshita - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Akio full_name: Neki, Akio last_name: Neki - first_name: Sakashi full_name: Nomura, Sakashi last_name: Nomura - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Masahiko full_name: Takada, Masahiko last_name: Takada - first_name: Shigetada full_name: Nakanishi, Shigetada last_name: Nakanishi - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: 'Kinoshita A, Ohishi H, Neki A, et al. Presynaptic localization of a metabotropic glutamate receptor, mGluR8, in the rhinencephalic areas: A light and electron microscope study in the rat. Neuroscience Letters. 1996;207(1):61-64. doi:10.1016/0304-3940(96)12489-7' apa: 'Kinoshita, A., Ohishi, H., Neki, A., Nomura, S., Shigemoto, R., Takada, M., … Mizuno, N. (1996). Presynaptic localization of a metabotropic glutamate receptor, mGluR8, in the rhinencephalic areas: A light and electron microscope study in the rat. Neuroscience Letters. Elsevier. https://doi.org/10.1016/0304-3940(96)12489-7' chicago: 'Kinoshita, Ayae, Hitoshi Ohishi, Akio Neki, Sakashi Nomura, Ryuichi Shigemoto, Masahiko Takada, Shigetada Nakanishi, and Noboru Mizuno. “Presynaptic Localization of a Metabotropic Glutamate Receptor, MGluR8, in the Rhinencephalic Areas: A Light and Electron Microscope Study in the Rat.” Neuroscience Letters. Elsevier, 1996. https://doi.org/10.1016/0304-3940(96)12489-7.' ieee: 'A. Kinoshita et al., “Presynaptic localization of a metabotropic glutamate receptor, mGluR8, in the rhinencephalic areas: A light and electron microscope study in the rat,” Neuroscience Letters, vol. 207, no. 1. Elsevier, pp. 61–64, 1996.' ista: 'Kinoshita A, Ohishi H, Neki A, Nomura S, Shigemoto R, Takada M, Nakanishi S, Mizuno N. 1996. Presynaptic localization of a metabotropic glutamate receptor, mGluR8, in the rhinencephalic areas: A light and electron microscope study in the rat. Neuroscience Letters. 207(1), 61–64.' mla: 'Kinoshita, Ayae, et al. “Presynaptic Localization of a Metabotropic Glutamate Receptor, MGluR8, in the Rhinencephalic Areas: A Light and Electron Microscope Study in the Rat.” Neuroscience Letters, vol. 207, no. 1, Elsevier, 1996, pp. 61–64, doi:10.1016/0304-3940(96)12489-7.' short: A. Kinoshita, H. Ohishi, A. Neki, S. Nomura, R. Shigemoto, M. Takada, S. Nakanishi, N. Mizuno, Neuroscience Letters 207 (1996) 61–64. date_created: 2018-12-11T11:58:25Z date_published: 1996-03-22T00:00:00Z date_updated: 2022-08-12T09:24:06Z day: '22' doi: 10.1016/0304-3940(96)12489-7 extern: '1' external_id: pmid: - '8710211 ' intvolume: ' 207' issue: '1' language: - iso: eng month: '03' oa_version: None page: 61 - 64 pmid: 1 publication: Neuroscience Letters publication_identifier: issn: - 0304-3940 publication_status: published publisher: Elsevier publist_id: '4332' quality_controlled: '1' scopus_import: '1' status: public title: 'Presynaptic localization of a metabotropic glutamate receptor, mGluR8, in the rhinencephalic areas: A light and electron microscope study in the rat' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 207 year: '1996' ... --- _id: '2565' abstract: - lang: eng text: Immunoreactivity for the metabotropic glutamate receptor 7 (mGluR7) and that for phosphate-activated glutaminase (PAG) were examined in the trigeminal (TG), dorsal root (DRG), nodose (NG), superior cervical, celiac, and pelvic ganglia of the rat. Virtually all neuronal cell bodies showed mGluR7-like immunoreactivity (mGluR7-LI) in these ganglia. On the other hand, PAG-like immunoreactivity (PAG) was seen in almost all neuronal cell bodies in the TG, DRG and NG, but not in the other ganglia. Co-existence of mGluR7- and PAG-LI in the TG, DRG and NG was confirmed by a double-immunofluorescence immunohistochemical method. The results indicate that virtually all sensory ganglion neurons are glutamatergic and equipped with mGluR7. acknowledgement: The authors are grateful for the support of Dr. Kajitaro Morita and photographic help of Mr. Akira Uesugi. This work was supported in part by Grant-in-Aid from the Ministry of Education, Science and Culture of Japan. article_processing_charge: No article_type: original author: - first_name: Jin full_name: Li, Jin last_name: Li - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Takeshi full_name: Kaneko, Takeshi last_name: Kaneko - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Akio full_name: Neki, Akio last_name: Neki - first_name: Shigetada full_name: Nakanishi, Shigetada last_name: Nakanishi - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: Li J, Ohishi H, Kaneko T, et al. Immunohistochemical localization of a metabotropic glutamate receptor, mGluR7, in ganglion neurons of the rat; with special reference to the presence in glutamatergic ganglion neurons. Neuroscience Letters. 1996;204(1-2):9-12. doi:10.1016/0304-3940(95)12299-0 apa: Li, J., Ohishi, H., Kaneko, T., Shigemoto, R., Neki, A., Nakanishi, S., & Mizuno, N. (1996). Immunohistochemical localization of a metabotropic glutamate receptor, mGluR7, in ganglion neurons of the rat; with special reference to the presence in glutamatergic ganglion neurons. Neuroscience Letters. Elsevier. https://doi.org/10.1016/0304-3940(95)12299-0 chicago: Li, Jin, Hitoshi Ohishi, Takeshi Kaneko, Ryuichi Shigemoto, Akio Neki, Shigetada Nakanishi, and Noboru Mizuno. “Immunohistochemical Localization of a Metabotropic Glutamate Receptor, MGluR7, in Ganglion Neurons of the Rat; with Special Reference to the Presence in Glutamatergic Ganglion Neurons.” Neuroscience Letters. Elsevier, 1996. https://doi.org/10.1016/0304-3940(95)12299-0. ieee: J. Li et al., “Immunohistochemical localization of a metabotropic glutamate receptor, mGluR7, in ganglion neurons of the rat; with special reference to the presence in glutamatergic ganglion neurons,” Neuroscience Letters, vol. 204, no. 1–2. Elsevier, pp. 9–12, 1996. ista: Li J, Ohishi H, Kaneko T, Shigemoto R, Neki A, Nakanishi S, Mizuno N. 1996. Immunohistochemical localization of a metabotropic glutamate receptor, mGluR7, in ganglion neurons of the rat; with special reference to the presence in glutamatergic ganglion neurons. Neuroscience Letters. 204(1–2), 9–12. mla: Li, Jin, et al. “Immunohistochemical Localization of a Metabotropic Glutamate Receptor, MGluR7, in Ganglion Neurons of the Rat; with Special Reference to the Presence in Glutamatergic Ganglion Neurons.” Neuroscience Letters, vol. 204, no. 1–2, Elsevier, 1996, pp. 9–12, doi:10.1016/0304-3940(95)12299-0. short: J. Li, H. Ohishi, T. Kaneko, R. Shigemoto, A. Neki, S. Nakanishi, N. Mizuno, Neuroscience Letters 204 (1996) 9–12. date_created: 2018-12-11T11:58:25Z date_published: 1996-02-02T00:00:00Z date_updated: 2022-08-12T09:29:03Z day: '02' doi: 10.1016/0304-3940(95)12299-0 extern: '1' external_id: pmid: - '8929965 ' intvolume: ' 204' issue: 1-2 language: - iso: eng month: '02' oa_version: None page: 9 - 12 pmid: 1 publication: Neuroscience Letters publication_identifier: issn: - 0304-3940 publication_status: published publisher: Elsevier publist_id: '4333' quality_controlled: '1' scopus_import: '1' status: public title: Immunohistochemical localization of a metabotropic glutamate receptor, mGluR7, in ganglion neurons of the rat; with special reference to the presence in glutamatergic ganglion neurons type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 204 year: '1996' ... --- _id: '2562' abstract: - lang: eng text: A monoclonal antibody against a metabotropic glutamate receptor, mGluR2, was produced by using a glutathione S-transferase (GST) fusion protein containing an N-terminal sequence of rat mGluR2. Intense mGluR2-like immunoreactivity (mGluR2-LI) was seen mainly in neuropil of the cerebral cortical regions, hippocampus, olfactory bulb, some diencephalic nuclei, dorsal cochlear nucleus and cerebellar cortex. In the cerebellar cortex, mGluR2-LI was seen only in Golgi cells. In Ammon's hem, mGluR2-LI was marked in the stratum lucidum of CA3 and the stratum lacunosum-moleculare of CA1-CA3, but not detected in the stratum pyramidale. The results indicate that mGluR2 is located not only presynaptically but also postsynaptically. acknowledgement: We are grateful to Mr. Akira Uesugi for photographic help. article_processing_charge: No article_type: original author: - first_name: Akio full_name: Neki, Akio last_name: Neki - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Takeshi full_name: Kaneko, Takeshi last_name: Kaneko - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Shigetada full_name: Nakanishi, Shigetada last_name: Nakanishi - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: 'Neki A, Ohishi H, Kaneko T, Shigemoto R, Nakanishi S, Mizuno N. Pre- and postsynaptic localization of a metabotropic glutamate receptor, mGluR2, in the rat brain: An immunohistochemical study with a monoclonal antibody. Neuroscience Letters. 1996;202(3):197-200. doi:10.1016/0304-3940(95)12248-6' apa: 'Neki, A., Ohishi, H., Kaneko, T., Shigemoto, R., Nakanishi, S., & Mizuno, N. (1996). Pre- and postsynaptic localization of a metabotropic glutamate receptor, mGluR2, in the rat brain: An immunohistochemical study with a monoclonal antibody. Neuroscience Letters. Elsevier. https://doi.org/10.1016/0304-3940(95)12248-6' chicago: 'Neki, Akio, Hitoshi Ohishi, Takeshi Kaneko, Ryuichi Shigemoto, Shigetada Nakanishi, and Noboru Mizuno. “Pre- and Postsynaptic Localization of a Metabotropic Glutamate Receptor, MGluR2, in the Rat Brain: An Immunohistochemical Study with a Monoclonal Antibody.” Neuroscience Letters. Elsevier, 1996. https://doi.org/10.1016/0304-3940(95)12248-6.' ieee: 'A. Neki, H. Ohishi, T. Kaneko, R. Shigemoto, S. Nakanishi, and N. Mizuno, “Pre- and postsynaptic localization of a metabotropic glutamate receptor, mGluR2, in the rat brain: An immunohistochemical study with a monoclonal antibody,” Neuroscience Letters, vol. 202, no. 3. Elsevier, pp. 197–200, 1996.' ista: 'Neki A, Ohishi H, Kaneko T, Shigemoto R, Nakanishi S, Mizuno N. 1996. Pre- and postsynaptic localization of a metabotropic glutamate receptor, mGluR2, in the rat brain: An immunohistochemical study with a monoclonal antibody. Neuroscience Letters. 202(3), 197–200.' mla: 'Neki, Akio, et al. “Pre- and Postsynaptic Localization of a Metabotropic Glutamate Receptor, MGluR2, in the Rat Brain: An Immunohistochemical Study with a Monoclonal Antibody.” Neuroscience Letters, vol. 202, no. 3, Elsevier, 1996, pp. 197–200, doi:10.1016/0304-3940(95)12248-6.' short: A. Neki, H. Ohishi, T. Kaneko, R. Shigemoto, S. Nakanishi, N. Mizuno, Neuroscience Letters 202 (1996) 197–200. date_created: 2018-12-11T11:58:24Z date_published: 1996-01-05T00:00:00Z date_updated: 2022-08-12T12:04:18Z day: '05' doi: 10.1016/0304-3940(95)12248-6 extern: '1' external_id: pmid: - '8848265' intvolume: ' 202' issue: '3' language: - iso: eng month: '01' oa_version: None page: 197 - 200 pmid: 1 publication: Neuroscience Letters publication_identifier: issn: - 0304-3940 publication_status: published publisher: Elsevier publist_id: '4335' quality_controlled: '1' scopus_import: '1' status: public title: 'Pre- and postsynaptic localization of a metabotropic glutamate receptor, mGluR2, in the rat brain: An immunohistochemical study with a monoclonal antibody' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 202 year: '1996' ... --- _id: '2568' abstract: - lang: eng text: Localization of a metabotropic glutamate receptor, mGluR4a, was immunohistochemically examined in the rat cerebellum with an antibody, which was produced by using a synthetic peptide corresponding to a C-terminal sequence of rat mGluR4a. Marked mGluR4a-like immunoreactivity (mGluRLta-LI) was seen in neuropil of the molecular layer of the cerebellar cortex. Electron microscopically, mGluR4a-LI was observed in many axon terminals in the molecular layer. These axon terminals showing mGluR4a-LI were filled with round synaptic vesicles and were in asymmetric synaptic contacts most frequently with dendritic spines. The results indicate that mGluR4a are located presynaptically in the parallel fibers arising from the granule cells in the cerebellar cortex. acknowledgement: We are grateful to Mr. Akira Uesugi for photographic help. article_processing_charge: No article_type: original author: - first_name: Ayae full_name: Kinoshita, Ayae last_name: Kinoshita - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Sakashi full_name: Nomura, Sakashi last_name: Nomura - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Shigetada full_name: Nakanishi, Shigetada last_name: Nakanishi - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: 'Kinoshita A, Ohishi H, Nomura S, Shigemoto R, Nakanishi S, Mizuno N. Presynaptic localization of a metabotropic glutamate receptor, mGluR4a, in the cerebellar cortex: A light and electron microscope study in the rat. Neuroscience Letters. 1996;207(3):199-202. doi:10.1016/0304-3940(96)12519-2' apa: 'Kinoshita, A., Ohishi, H., Nomura, S., Shigemoto, R., Nakanishi, S., & Mizuno, N. (1996). Presynaptic localization of a metabotropic glutamate receptor, mGluR4a, in the cerebellar cortex: A light and electron microscope study in the rat. Neuroscience Letters. Elsevier. https://doi.org/10.1016/0304-3940(96)12519-2' chicago: 'Kinoshita, Ayae, Hitoshi Ohishi, Sakashi Nomura, Ryuichi Shigemoto, Shigetada Nakanishi, and Noboru Mizuno. “Presynaptic Localization of a Metabotropic Glutamate Receptor, MGluR4a, in the Cerebellar Cortex: A Light and Electron Microscope Study in the Rat.” Neuroscience Letters. Elsevier, 1996. https://doi.org/10.1016/0304-3940(96)12519-2.' ieee: 'A. Kinoshita, H. Ohishi, S. Nomura, R. Shigemoto, S. Nakanishi, and N. Mizuno, “Presynaptic localization of a metabotropic glutamate receptor, mGluR4a, in the cerebellar cortex: A light and electron microscope study in the rat,” Neuroscience Letters, vol. 207, no. 3. Elsevier, pp. 199–202, 1996.' ista: 'Kinoshita A, Ohishi H, Nomura S, Shigemoto R, Nakanishi S, Mizuno N. 1996. Presynaptic localization of a metabotropic glutamate receptor, mGluR4a, in the cerebellar cortex: A light and electron microscope study in the rat. Neuroscience Letters. 207(3), 199–202.' mla: 'Kinoshita, Ayae, et al. “Presynaptic Localization of a Metabotropic Glutamate Receptor, MGluR4a, in the Cerebellar Cortex: A Light and Electron Microscope Study in the Rat.” Neuroscience Letters, vol. 207, no. 3, Elsevier, 1996, pp. 199–202, doi:10.1016/0304-3940(96)12519-2.' short: A. Kinoshita, H. Ohishi, S. Nomura, R. Shigemoto, S. Nakanishi, N. Mizuno, Neuroscience Letters 207 (1996) 199–202. date_created: 2018-12-11T11:58:26Z date_published: 1996-04-05T00:00:00Z date_updated: 2022-08-12T09:06:18Z day: '05' doi: 10.1016/0304-3940(96)12519-2 extern: '1' external_id: pmid: - '8728484' intvolume: ' 207' issue: '3' language: - iso: eng month: '04' oa_version: None page: 199 - 202 pmid: 1 publication: Neuroscience Letters publication_identifier: issn: - 0304-3940 publication_status: published publisher: Elsevier publist_id: '4331' quality_controlled: '1' scopus_import: '1' status: public title: 'Presynaptic localization of a metabotropic glutamate receptor, mGluR4a, in the cerebellar cortex: A light and electron microscope study in the rat' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 207 year: '1996' ... --- _id: '2569' abstract: - lang: eng text: Morphological substrates for interactions between γ-aminobutyric acid (GABA) and substance P upon neurons expressing substance Preceptor (SPR) in the nucleus of the solitary tract (NST) were investigated by immunocytochemical electron microscopy. In the NST of the rat, many GABA-like immunoreactive axon terminals were in symmetric synaptic contacts with dendritic profiles; they were observed on nearly a half of the SPR-like immunoreactive dendritic profiles in the medial part of the caudal half of the NST. acknowledgement: 'The authors thank Prof. Hui-Min Li for his critical reading of the manuscript and his excellent suggestions. We are also grateful to Ms. Miao-Li Zhang for her assistance in the electron microscopic technique and photography and to Mr. Akira Uesugi for photographic help. This work was supported in part by the Grant (39370240) from the National Natural Science Foundation of China. ' article_processing_charge: No article_type: original author: - first_name: Hong full_name: Jia, Hong last_name: Jia - first_name: Bai full_name: Wang, Bai last_name: Wang - first_name: Zhi full_name: Rao, Zhi last_name: Rao - first_name: Ji full_name: Shi, Ji last_name: Shi - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Takeshi full_name: Kaneko, Takeshi last_name: Kaneko - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: 'Jia H, Wang B, Rao Z, et al. GABAergic synapses upon neurons expressing substance P receptors in the nucleus of the solitary tract: An immunocytochemical electron microscope study in the rat. Neuroscience Letters. 1996;210(1):49-52. doi:10.1016/0304-3940(96)12654-9' apa: 'Jia, H., Wang, B., Rao, Z., Shi, J., Shigemoto, R., Kaneko, T., & Mizuno, N. (1996). GABAergic synapses upon neurons expressing substance P receptors in the nucleus of the solitary tract: An immunocytochemical electron microscope study in the rat. Neuroscience Letters. Elsevier. https://doi.org/10.1016/0304-3940(96)12654-9' chicago: 'Jia, Hong, Bai Wang, Zhi Rao, Ji Shi, Ryuichi Shigemoto, Takeshi Kaneko, and Noboru Mizuno. “GABAergic Synapses upon Neurons Expressing Substance P Receptors in the Nucleus of the Solitary Tract: An Immunocytochemical Electron Microscope Study in the Rat.” Neuroscience Letters. Elsevier, 1996. https://doi.org/10.1016/0304-3940(96)12654-9.' ieee: 'H. Jia et al., “GABAergic synapses upon neurons expressing substance P receptors in the nucleus of the solitary tract: An immunocytochemical electron microscope study in the rat,” Neuroscience Letters, vol. 210, no. 1. Elsevier, pp. 49–52, 1996.' ista: 'Jia H, Wang B, Rao Z, Shi J, Shigemoto R, Kaneko T, Mizuno N. 1996. GABAergic synapses upon neurons expressing substance P receptors in the nucleus of the solitary tract: An immunocytochemical electron microscope study in the rat. Neuroscience Letters. 210(1), 49–52.' mla: 'Jia, Hong, et al. “GABAergic Synapses upon Neurons Expressing Substance P Receptors in the Nucleus of the Solitary Tract: An Immunocytochemical Electron Microscope Study in the Rat.” Neuroscience Letters, vol. 210, no. 1, Elsevier, 1996, pp. 49–52, doi:10.1016/0304-3940(96)12654-9.' short: H. Jia, B. Wang, Z. Rao, J. Shi, R. Shigemoto, T. Kaneko, N. Mizuno, Neuroscience Letters 210 (1996) 49–52. date_created: 2018-12-11T11:58:26Z date_published: 1996-05-24T00:00:00Z date_updated: 2022-08-12T08:18:55Z day: '24' doi: 10.1016/0304-3940(96)12654-9 extern: '1' external_id: pmid: - '8762189' intvolume: ' 210' issue: '1' language: - iso: eng month: '05' oa_version: None page: 49 - 52 pmid: 1 publication: Neuroscience Letters publication_identifier: issn: - 0304-3940 publication_status: published publisher: Elsevier publist_id: '4329' quality_controlled: '1' scopus_import: '1' status: public title: 'GABAergic synapses upon neurons expressing substance P receptors in the nucleus of the solitary tract: An immunocytochemical electron microscope study in the rat' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 210 year: '1996' ... --- _id: '2567' abstract: - lang: eng text: Trigeminothalamic and spinothalamic-tact neurons provided with substance P receptor (SPR) were examined in the rat by SPR immunofluorescence histochemistry combined with Fluoro-Gold (FG) fluorescent retrograde labeling. After FG injection in the thalamic regions, FG-labeled cells with SPR-like immunoreactivity were seen mainly in laminae I and m of the medullary and spinal dorsal horns and lateral spinal nucleus. In these regions, about one-fourth to one-third of FG-labeled cells showed SPR-like immunoreactivity. acknowledgement: "The authors are grateful for support of Dr. Kajitaro Morita in the Morita Clinic of Internal Medicine and Pediatrics at Kadoma, Osaka, and for photographic help of Mr. Akira Uesugi. This work was supported in part by Grants-in-Aid from the Ministry of Education, Science and Culture of Japan. \r\n" article_processing_charge: No article_type: original author: - first_name: Jin full_name: Li, Jin last_name: Li - first_name: Yu full_name: Ding, Yu last_name: Ding - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: Li J, Ding Y, Shigemoto R, Mizuno N. Distribution of trigeminothalamic and spinothalamic-tract neurons showing substance P receptor-like immunoreactivity in the rat. Brain Research. 1996;719(1-2):207-212. doi:10.1016/0006-8993(96)00064-9 apa: Li, J., Ding, Y., Shigemoto, R., & Mizuno, N. (1996). Distribution of trigeminothalamic and spinothalamic-tract neurons showing substance P receptor-like immunoreactivity in the rat. Brain Research. Elsevier. https://doi.org/10.1016/0006-8993(96)00064-9 chicago: Li, Jin, Yu Ding, Ryuichi Shigemoto, and Noboru Mizuno. “Distribution of Trigeminothalamic and Spinothalamic-Tract Neurons Showing Substance P Receptor-like Immunoreactivity in the Rat.” Brain Research. Elsevier, 1996. https://doi.org/10.1016/0006-8993(96)00064-9. ieee: J. Li, Y. Ding, R. Shigemoto, and N. Mizuno, “Distribution of trigeminothalamic and spinothalamic-tract neurons showing substance P receptor-like immunoreactivity in the rat,” Brain Research, vol. 719, no. 1–2. Elsevier, pp. 207–212, 1996. ista: Li J, Ding Y, Shigemoto R, Mizuno N. 1996. Distribution of trigeminothalamic and spinothalamic-tract neurons showing substance P receptor-like immunoreactivity in the rat. Brain Research. 719(1–2), 207–212. mla: Li, Jin, et al. “Distribution of Trigeminothalamic and Spinothalamic-Tract Neurons Showing Substance P Receptor-like Immunoreactivity in the Rat.” Brain Research, vol. 719, no. 1–2, Elsevier, 1996, pp. 207–12, doi:10.1016/0006-8993(96)00064-9. short: J. Li, Y. Ding, R. Shigemoto, N. Mizuno, Brain Research 719 (1996) 207–212. date_created: 2018-12-11T11:58:26Z date_published: 1996-05-06T00:00:00Z date_updated: 2022-08-12T08:25:35Z day: '06' doi: 10.1016/0006-8993(96)00064-9 extern: '1' external_id: pmid: - '8782883 ' intvolume: ' 719' issue: 1-2 language: - iso: eng month: '05' oa_version: None page: 207 - 212 pmid: 1 publication: Brain Research publication_identifier: issn: - 0006-8993 publication_status: published publisher: Elsevier publist_id: '4330' quality_controlled: '1' scopus_import: '1' status: public title: Distribution of trigeminothalamic and spinothalamic-tract neurons showing substance P receptor-like immunoreactivity in the rat type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 719 year: '1996' ... --- _id: '2572' abstract: - lang: eng text: The distribution of the mRNA for a pituitary adenylate cyclase- activating polypeptide (PACAP) receptor (PACAP-R) was examined in the rat brain, and also in the hypophysis and pineal gland, by in situ hybridization with a specific 35S-labeled riboprobe which was generated from a rat PACAP-R cDNA clone. In the brain, expression of PACAP-R mRNA was most prominent in the periglomerular and granule cells of the olfactory bulb, granule cells of the dentate gyrus, supraoptic nucleus, and area postrema. The expression was also intense in the piriform, cingulate, and retrosplenial cortices, pyramidal cells in CA2, non-pyramidal cells in CA1- CA3, neuronal cells in the hilus of the dentate gyrus, lateral septal nucleus, intercalated amygdaloid nucleus, anterodorsal thalamic nucleus, most of the midline and intralaminar thalamic nuclei, many regions of the hypothalamus, dorsal motor nucleus of the vagus nerve, hypoglossal nucleus, and lateral reticular nucleus. No significant expression was detected in the mitral and tufted cells in the olfactory bulb, pyramidal cells in CA1 and CA3, posterior nuclear group of the thalamus, dorsal lateral geniculate nucleus, and Purkinje, Golgi, and granule cells in the cerebellar cortex. Moderate-to-weak expression was further observed in many other regions of the brain. In the cerebellar cortex, presumed Bergmann gila cells showed moderate expression. In the hypophysis, the expression was moderate in the anterior lobe, and weak to moderate in the posterior lobe; no significant expression was observed in the intermediate lobe. In the pineal gland, the expression was very weak, if any. Thus, the expression of PACAP-R was detected not only on neuronal cells but also on some particular glial cells. The present study has shown, for the first time, the exact site of PACAP-R expression in the brain and hypophysis. Although the functional significance of PACAP and PACAP-R in the brain still remains to be clarified, the present results are considered to provide some direction for future functional studies. acknowledgement: We are grateful for the photographic help of Mr. Akira Uesugi and helpful discussions and support of Drs. Shige- tada Nakanishi, Yukihiko Sugimoto, Atsushi Ichikawa, Masabumi Minami, Takeshi Ishihara, Jun Ogasawara, Daisuke Watanabe, Akiko Tani, Yoshihiro Yoshihara, Miwa Kawasaki, Hiroshi Aino, Nobuya Ogawa, Akiko Nishino, and Rie Hosoi. We also thank Ms. Yukiko Sakagami for secretarial assistance. This work was supported in part by a Grant-in-Aid for Scientific Research from the Ministry of We are grateful for the photographic help of Mr. Akira Uesugi and helpful discussions and support of Drs. Shige- tada Nakanishi, Yukihiko Sugimoto, Atsushi Ichikawa, Masabumi Minami, Takeshi Ishihara, Jun Ogasawara, Daisuke Watanabe, Akiko Tani, Yoshihiro Yoshihara, Miwa Kawasaki, Hiroshi Aino, Nobuya Ogawa, Akiko Nishino, and Rie Hosoi. We also thank Ms. Yukiko Sakagami for secretarial assistance. This work was supported in part by a Grant-in-Aid for Scientific Research from the Ministry of We are grateful for the photographic help of Mr. Akira Uesugi and helpful discussions and support of Drs. Shige- tada Nakanishi, Yukihiko Sugimoto, Atsushi Ichikawa, Masabumi Minami, Takeshi Ishihara, Jun Ogasawara, Daisuke Watanabe, Akiko Tani, Yoshihiro Yoshihara, Miwa Kawasaki, Hiroshi Aino, Nobuya Ogawa, Akiko Nishino, and Rie Hosoi. We also thank Ms. Yukiko Sakagami for secretarial assistance. This work was supported in part by a Grant-in-Aid for Scientific Research from the Ministry of Education, Science and Culture of Japan and by grants from Uehara Memorial Foundation and Ono Pharmaceutical Co., Ltd article_processing_charge: No article_type: original author: - first_name: Hitoshi full_name: Hashimoto, Hitoshi last_name: Hashimoto - first_name: Hiroyuki full_name: Nogi, Hiroyuki last_name: Nogi - first_name: Kensaku full_name: Mori, Kensaku last_name: Mori - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Kyohei full_name: Yamamoto, Kyohei last_name: Yamamoto - first_name: Toshio full_name: Matsuda, Toshio last_name: Matsuda - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno - first_name: Shigekazu full_name: Nagata, Shigekazu last_name: Nagata - first_name: Akemichi full_name: Baba, Akemichi last_name: Baba citation: ama: 'Hashimoto H, Nogi H, Mori K, et al. Distribution of the mRNA for a pituitary adenylate cyclase-activating polypeptide receptor in the rat brain: An in situ hybridization study. Journal of Comparative Neurology. 1996;371(4):567-577. doi:10.1002/(SICI)1096-9861(19960805)371:4&lt;567::AID-CNE6&gt;3.3.CO;2-M' apa: 'Hashimoto, H., Nogi, H., Mori, K., Ohishi, H., Shigemoto, R., Yamamoto, K., … Baba, A. (1996). Distribution of the mRNA for a pituitary adenylate cyclase-activating polypeptide receptor in the rat brain: An in situ hybridization study. Journal of Comparative Neurology. Wiley-Blackwell. https://doi.org/10.1002/(SICI)1096-9861(19960805)371:4&lt;567::AID-CNE6&gt;3.3.CO;2-M' chicago: 'Hashimoto, Hitoshi, Hiroyuki Nogi, Kensaku Mori, Hitoshi Ohishi, Ryuichi Shigemoto, Kyohei Yamamoto, Toshio Matsuda, Noboru Mizuno, Shigekazu Nagata, and Akemichi Baba. “Distribution of the MRNA for a Pituitary Adenylate Cyclase-Activating Polypeptide Receptor in the Rat Brain: An in Situ Hybridization Study.” Journal of Comparative Neurology. Wiley-Blackwell, 1996. https://doi.org/10.1002/(SICI)1096-9861(19960805)371:4&lt;567::AID-CNE6&gt;3.3.CO;2-M.' ieee: 'H. Hashimoto et al., “Distribution of the mRNA for a pituitary adenylate cyclase-activating polypeptide receptor in the rat brain: An in situ hybridization study,” Journal of Comparative Neurology, vol. 371, no. 4. Wiley-Blackwell, pp. 567–577, 1996.' ista: 'Hashimoto H, Nogi H, Mori K, Ohishi H, Shigemoto R, Yamamoto K, Matsuda T, Mizuno N, Nagata S, Baba A. 1996. Distribution of the mRNA for a pituitary adenylate cyclase-activating polypeptide receptor in the rat brain: An in situ hybridization study. Journal of Comparative Neurology. 371(4), 567–577.' mla: 'Hashimoto, Hitoshi, et al. “Distribution of the MRNA for a Pituitary Adenylate Cyclase-Activating Polypeptide Receptor in the Rat Brain: An in Situ Hybridization Study.” Journal of Comparative Neurology, vol. 371, no. 4, Wiley-Blackwell, 1996, pp. 567–77, doi:10.1002/(SICI)1096-9861(19960805)371:4&lt;567::AID-CNE6&gt;3.3.CO;2-M.' short: H. Hashimoto, H. Nogi, K. Mori, H. Ohishi, R. Shigemoto, K. Yamamoto, T. Matsuda, N. Mizuno, S. Nagata, A. Baba, Journal of Comparative Neurology 371 (1996) 567–577. date_created: 2018-12-11T11:58:27Z date_published: 1996-08-05T00:00:00Z date_updated: 2022-08-11T13:20:31Z day: '05' doi: 10.1002/(SICI)1096-9861(19960805)371:4<567::AID-CNE6>3.3.CO;2-M extern: '1' external_id: pmid: - '8841910' intvolume: ' 371' issue: '4' language: - iso: eng month: '08' oa_version: None page: 567 - 577 pmid: 1 publication: Journal of Comparative Neurology publication_identifier: issn: - 0021-9967 publication_status: published publisher: Wiley-Blackwell publist_id: '4326' quality_controlled: '1' scopus_import: '1' status: public title: 'Distribution of the mRNA for a pituitary adenylate cyclase-activating polypeptide receptor in the rat brain: An in situ hybridization study' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 371 year: '1996' ... --- _id: '2574' abstract: - lang: eng text: lonotropic and metabotropic (mGluR1a) glutamate receptors were reported to be segregated from each other within the postsynaptic membrane at individual synapses. In order to establish whether this pattern of distribution applies to the hippocampal principal cells and to other postsynaptic metabotropic glutamate receptors, the mGluR1a/b/c and mGluR5 subtypes were localized by immunocytochemistry. Principal cells in all hippocampal fields were reactive for mGluR5, the strata oriens and radiatum of the CA1 area being most strongly immunolabelled. Labelling for mGluR1b/c was strongest on some pyramids in the CA3 area, weaker on granule cells and absent on CA1 pyramids. Subpopulations of non-principal cells showed strong mGluR1 or mGluR5 immunoreactivity. Electron microscopic pre-embedding immunoperoxidase and both pre- and postembedding immunogold methods consistently revealed the extrasynaptic location of both mGluRs in the somatic and dendritic membrane of pyramidal and granule cells. The density of immunolabelling was highest on dendritic spines. At synapses, immunoparticles for both mGluR1 and mGluR5 were found always outside the postsynaptic membrane specializations. Receptors were particularly concentrated in a perisynaptic annulus around type 1 synaptic junctions, including the invaginations at 'perforated' synapses. Measurements of immunolabelling on dendritic spines showed decreasing levels of receptor as a function of distance from the edge of the synaptic specialization. We propose that glutamatergic synapses with an irregular edge develop in order to increase the circumference of synaptic junctions leading to an increase in the metabotropic to ionotropic glutamate receptor ratio at glutamate release sites. The perisynaptic position of postsynaptic metabotropic glutamate receptors appears to be a general feature of glutamatergic synaptic organization and may apply to other G-protein-coupled receptors. © European Neuroscience Association. article_processing_charge: No article_type: original author: - first_name: Rafael full_name: Luján, Rafael last_name: Luján - first_name: Zoltán full_name: Nusser, Zoltán last_name: Nusser - first_name: John full_name: Roberts, John last_name: Roberts - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Péter full_name: Somogyi, Péter last_name: Somogyi citation: ama: Luján R, Nusser Z, Roberts J, Shigemoto R, Somogyi P. Perisynaptic location of metabotropic glutamate receptors mGluR1 and mGluR5 on dendrites and dendritic spines in the rat hippocampus. European Journal of Neuroscience. 1996;8(7):1488-1500. doi:10.1111/j.1460-9568.1996.tb01611.x apa: Luján, R., Nusser, Z., Roberts, J., Shigemoto, R., & Somogyi, P. (1996). Perisynaptic location of metabotropic glutamate receptors mGluR1 and mGluR5 on dendrites and dendritic spines in the rat hippocampus. European Journal of Neuroscience. Wiley-Blackwell. https://doi.org/10.1111/j.1460-9568.1996.tb01611.x chicago: Luján, Rafael, Zoltán Nusser, John Roberts, Ryuichi Shigemoto, and Péter Somogyi. “ Perisynaptic Location of Metabotropic Glutamate Receptors MGluR1 and MGluR5 on Dendrites and Dendritic Spines in the Rat Hippocampus.” European Journal of Neuroscience. Wiley-Blackwell, 1996. https://doi.org/10.1111/j.1460-9568.1996.tb01611.x. ieee: R. Luján, Z. Nusser, J. Roberts, R. Shigemoto, and P. Somogyi, “ Perisynaptic location of metabotropic glutamate receptors mGluR1 and mGluR5 on dendrites and dendritic spines in the rat hippocampus,” European Journal of Neuroscience, vol. 8, no. 7. Wiley-Blackwell, pp. 1488–1500, 1996. ista: Luján R, Nusser Z, Roberts J, Shigemoto R, Somogyi P. 1996. Perisynaptic location of metabotropic glutamate receptors mGluR1 and mGluR5 on dendrites and dendritic spines in the rat hippocampus. European Journal of Neuroscience. 8(7), 1488–1500. mla: Luján, Rafael, et al. “ Perisynaptic Location of Metabotropic Glutamate Receptors MGluR1 and MGluR5 on Dendrites and Dendritic Spines in the Rat Hippocampus.” European Journal of Neuroscience, vol. 8, no. 7, Wiley-Blackwell, 1996, pp. 1488–500, doi:10.1111/j.1460-9568.1996.tb01611.x. short: R. Luján, Z. Nusser, J. Roberts, R. Shigemoto, P. Somogyi, European Journal of Neuroscience 8 (1996) 1488–1500. date_created: 2018-12-11T11:58:28Z date_published: 1996-07-01T00:00:00Z date_updated: 2022-08-11T11:57:08Z day: '01' doi: 10.1111/j.1460-9568.1996.tb01611.x extern: '1' external_id: pmid: - '8758956 ' intvolume: ' 8' issue: '7' language: - iso: eng month: '07' oa_version: None page: 1488 - 1500 pmid: 1 publication: European Journal of Neuroscience publication_identifier: issn: - 0953-816X publication_status: published publisher: Wiley-Blackwell publist_id: '4324' quality_controlled: '1' scopus_import: '1' status: public title: ' Perisynaptic location of metabotropic glutamate receptors mGluR1 and mGluR5 on dendrites and dendritic spines in the rat hippocampus' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 8 year: '1996' ... --- _id: '2573' abstract: - lang: eng text: Developmental changes of the distribution pattern of substance P receptor (SPR) were investigated immunohistochemically in the rat striatum. The SPR immunoreactivity in the striatum first emerged at postnatal day 1 and transiently showed a patchy pattern of distribution until it displayed the adult pattern of homogeneous distribution by the end of the third postnatal week. The SPR-immunoreactive patches were most marked in the medial and dorsolateral parts of the striatum, as well as in the subcallosal streak. They matched tyrosine hydroxylase-enriched areas and, conversely, avoided calbindin-enriched zones. No neurons within the SPR-immunoreactive patches contained either choline acetyltransferase or somatostatin, which is known to be contained in intrinsic neurons in the striatum. The vast majority of SPR-immunoreactive patch neurons also contained DARPP-32, a phosphoprotein that is expressed in striatal projection neurons with D1 dopamine receptor. The results indicate that SPR-immunoreactive patches which appear transiently in the developing striatum are in register with the striatal patch compartment, and that SPR immunoreactivity within these patches may be expressed on projection neurons rather than intrinsic neurons. Such SPR immunoreactivity in projection neurons in striatal patches may fade out in adulthood. acknowledgement: "We thank Mr. Akira Uesugi and Ms. Miao-Li Zhang for their photographic help. We are also grateful for the support of Dr. Kajitaro Morita in the Morita Clinic of Internal Medicine and Pediatrics at Kadoma, Osaka, Japan, and for the support of Drs. Satoru Fukuchi, Ritsu Hayashi, Sozaburo Hayashi, Mizuho Katsurada, Yutaka Kitani, Keiko Kumagai, Toshihiko Kuroda., Hiroshi Matsubara, Hiroshi Matsushita, Chisato Minakuchi, Gonpei Niwa, Hajime Oda, Masahiko Ohbayashi, Sei-ichi Ohbayashi, Hiroyasu Ohtsuka, Shigeo Tamaki, Eizo Watanabe, Kazuo Yoshino, and Toshiaki Yoshino. This work was supported in part by Grants-in-Aid for Special Research on Priority Areas 05267104, Scientific Research (B) \r\n5454658, and Scientific Research (C) 05680658 and 06680735 from the Ministry of Education, Science and Culture of Japan." article_processing_charge: No article_type: original author: - first_name: Hironobu full_name: Tokuno, Hironobu last_name: Tokuno - first_name: Masahiko full_name: Takada, Masahiko last_name: Takada - first_name: Takeshi full_name: Kaneko, Takeshi last_name: Kaneko - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Noboru full_name: Mizuno, Noboru last_name: Mizuno citation: ama: Tokuno H, Takada M, Kaneko T, Shigemoto R, Mizuno N. Patchy distribution of substance P receptor immunoreactivity in the developing rat striatum. Developmental Brain Research. 1996;95(1):107-117. doi:10.1016/0165-3806(96)00080-6 apa: Tokuno, H., Takada, M., Kaneko, T., Shigemoto, R., & Mizuno, N. (1996). Patchy distribution of substance P receptor immunoreactivity in the developing rat striatum. Developmental Brain Research. Elsevier. https://doi.org/10.1016/0165-3806(96)00080-6 chicago: Tokuno, Hironobu, Masahiko Takada, Takeshi Kaneko, Ryuichi Shigemoto, and Noboru Mizuno. “Patchy Distribution of Substance P Receptor Immunoreactivity in the Developing Rat Striatum.” Developmental Brain Research. Elsevier, 1996. https://doi.org/10.1016/0165-3806(96)00080-6. ieee: H. Tokuno, M. Takada, T. Kaneko, R. Shigemoto, and N. Mizuno, “Patchy distribution of substance P receptor immunoreactivity in the developing rat striatum,” Developmental Brain Research, vol. 95, no. 1. Elsevier, pp. 107–117, 1996. ista: Tokuno H, Takada M, Kaneko T, Shigemoto R, Mizuno N. 1996. Patchy distribution of substance P receptor immunoreactivity in the developing rat striatum. Developmental Brain Research. 95(1), 107–117. mla: Tokuno, Hironobu, et al. “Patchy Distribution of Substance P Receptor Immunoreactivity in the Developing Rat Striatum.” Developmental Brain Research, vol. 95, no. 1, Elsevier, 1996, pp. 107–17, doi:10.1016/0165-3806(96)00080-6. short: H. Tokuno, M. Takada, T. Kaneko, R. Shigemoto, N. Mizuno, Developmental Brain Research 95 (1996) 107–117. date_created: 2018-12-11T11:58:28Z date_published: 1996-08-20T00:00:00Z date_updated: 2022-08-11T12:07:34Z day: '20' doi: 10.1016/0165-3806(96)00080-6 extern: '1' external_id: pmid: - '8873981 ' intvolume: ' 95' issue: '1' language: - iso: eng month: '08' oa_version: None page: 107 - 117 pmid: 1 publication: Developmental Brain Research publication_identifier: issn: - 0165-3806 publication_status: published publisher: Elsevier publist_id: '4325' quality_controlled: '1' scopus_import: '1' status: public title: Patchy distribution of substance P receptor immunoreactivity in the developing rat striatum type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 95 year: '1996' ... --- _id: '2570' abstract: - lang: eng text: The probability of synaptic neurotransmitter release from nerve terminals is regulated by presynaptic receptors responding to transmitters released from the same nerve terminal or from terminals of other neurons. The release of glutamate, the major excitatory neurotransmitter, is suppressed by presynaptic auto receptors. Here we show that a metabotropic glutamate receptor (mGluR7) in the rat hippocampus is restricted to the presynaptic grid, the site of synaptic vesicle fusion. Pyramidal cell terminals presynaptic to mGluR1α-expressing interneurons have at least a ten-fold higher level of presynaptic mGluR7 than terminals making synapses with pyramidal cells and other types of interneuron. Distinct levels of mGluR7 are found at different synapses made by individual pyramidal axons or even single boutons. These results raise the possibility that presynaptic neurons could regulate the probability of transmitter release at individual synapses according to the postsynaptic target acknowledgement: 'We thank E. Molnar for help in immunoblotting; A. D. Smith for comments on the manuscript; D. Latawiec fortechnical assistance; and P. Jays and F. Kennedy for photographic assistance. This work was partly supported by the Ministry of Education, Science and Culture of Japan. AK. is supported by the MHB MagyarTudomanyert Foundation and the OTKA Foundation of the Hungarian Government. ' article_processing_charge: No article_type: original author: - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Ákos full_name: Kulik, Ákos last_name: Kulik - first_name: John full_name: Roberts, John last_name: Roberts - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Zoltán full_name: Nusser, Zoltán last_name: Nusser - first_name: Takeshi full_name: Kaneko, Takeshi last_name: Kaneko - first_name: Péter full_name: Somogyi, Péter last_name: Somogyi citation: ama: Shigemoto R, Kulik Á, Roberts J, et al. Target-cell-specific concentration of a metabotropic glutamate receptor in the presynaptic active zone. Nature. 1996;381(6582):523-525. doi:10.1038/381523a0 apa: Shigemoto, R., Kulik, Á., Roberts, J., Ohishi, H., Nusser, Z., Kaneko, T., & Somogyi, P. (1996). Target-cell-specific concentration of a metabotropic glutamate receptor in the presynaptic active zone. Nature. Nature Publishing Group. https://doi.org/10.1038/381523a0 chicago: Shigemoto, Ryuichi, Ákos Kulik, John Roberts, Hitoshi Ohishi, Zoltán Nusser, Takeshi Kaneko, and Péter Somogyi. “Target-Cell-Specific Concentration of a Metabotropic Glutamate Receptor in the Presynaptic Active Zone.” Nature. Nature Publishing Group, 1996. https://doi.org/10.1038/381523a0. ieee: R. Shigemoto et al., “Target-cell-specific concentration of a metabotropic glutamate receptor in the presynaptic active zone,” Nature, vol. 381, no. 6582. Nature Publishing Group, pp. 523–525, 1996. ista: Shigemoto R, Kulik Á, Roberts J, Ohishi H, Nusser Z, Kaneko T, Somogyi P. 1996. Target-cell-specific concentration of a metabotropic glutamate receptor in the presynaptic active zone. Nature. 381(6582), 523–525. mla: Shigemoto, Ryuichi, et al. “Target-Cell-Specific Concentration of a Metabotropic Glutamate Receptor in the Presynaptic Active Zone.” Nature, vol. 381, no. 6582, Nature Publishing Group, 1996, pp. 523–25, doi:10.1038/381523a0. short: R. Shigemoto, Á. Kulik, J. Roberts, H. Ohishi, Z. Nusser, T. Kaneko, P. Somogyi, Nature 381 (1996) 523–525. date_created: 2018-12-11T11:58:26Z date_published: 1996-06-06T00:00:00Z date_updated: 2022-08-11T14:45:35Z day: '06' doi: 10.1038/381523a0 extern: '1' external_id: pmid: - '8632825 ' intvolume: ' 381' issue: '6582' language: - iso: eng month: '06' oa_version: None page: 523 - 525 pmid: 1 publication: Nature publication_identifier: issn: - 0028-0836 publication_status: published publisher: Nature Publishing Group publist_id: '4328' quality_controlled: '1' scopus_import: '1' status: public title: Target-cell-specific concentration of a metabotropic glutamate receptor in the presynaptic active zone type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 381 year: '1996' ... --- _id: '2571' abstract: - lang: eng text: Subtype 2 of the metabotropic glutamate receptor (mGluR2) is expressed in the presynaptic elements of hippocampal mossy fiber-CA3 synapses. Knockout mice deficient in mGluR2 showed no histological changes and no alterations in basal synaptic transmission, paired-pulse facilitation, or tetanus-induced long-term potentiation (LTP) at the mossy fiber-CA3 synapses. Long-term depression (LTD) induced by low-frequency stimulation, however, was almost fully abolished. The mutant mice performed normally in water maze learning tasks. Thus, the presynaptic mGluR2 is essential for inducing LTD at the mossy fiber-CA3 synapses, but this hippocampal LTD does not seem to be required for spatial learning. article_processing_charge: No article_type: original author: - first_name: Mineto full_name: Yokoi, Mineto last_name: Yokoi - first_name: Kazuto full_name: Kobayashi, Kazuto last_name: Kobayashi - first_name: Toshiya full_name: Manabe, Toshiya last_name: Manabe - first_name: Tomoyuki full_name: Takahashi, Tomoyuki last_name: Takahashi - first_name: Isako full_name: Sakaguchi, Isako last_name: Sakaguchi - first_name: Goro full_name: Katsuura, Goro last_name: Katsuura - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Hitoshi full_name: Ohishi, Hitoshi last_name: Ohishi - first_name: Sakashi full_name: Nomura, Sakashi last_name: Nomura - first_name: Kenji full_name: Nakamura, Kenji last_name: Nakamura - first_name: Kazuki full_name: Nakao, Kazuki last_name: Nakao - first_name: Motoya full_name: Katsuki, Motoya last_name: Katsuki - first_name: Shigetada full_name: Nakanishi, Shigetada last_name: Nakanishi citation: ama: Yokoi M, Kobayashi K, Manabe T, et al. Impairment of hippocampal mossy fiber LTD in mice lacking mGluR2. Science. 1996;273:645-647. doi:10.1126/science.273.5275.645 apa: Yokoi, M., Kobayashi, K., Manabe, T., Takahashi, T., Sakaguchi, I., Katsuura, G., … Nakanishi, S. (1996). Impairment of hippocampal mossy fiber LTD in mice lacking mGluR2. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.273.5275.645 chicago: Yokoi, Mineto, Kazuto Kobayashi, Toshiya Manabe, Tomoyuki Takahashi, Isako Sakaguchi, Goro Katsuura, Ryuichi Shigemoto, et al. “Impairment of Hippocampal Mossy Fiber LTD in Mice Lacking MGluR2.” Science. American Association for the Advancement of Science, 1996. https://doi.org/10.1126/science.273.5275.645. ieee: M. Yokoi et al., “Impairment of hippocampal mossy fiber LTD in mice lacking mGluR2,” Science, vol. 273. American Association for the Advancement of Science, pp. 645–647, 1996. ista: Yokoi M, Kobayashi K, Manabe T, Takahashi T, Sakaguchi I, Katsuura G, Shigemoto R, Ohishi H, Nomura S, Nakamura K, Nakao K, Katsuki M, Nakanishi S. 1996. Impairment of hippocampal mossy fiber LTD in mice lacking mGluR2. Science. 273, 645–647. mla: Yokoi, Mineto, et al. “Impairment of Hippocampal Mossy Fiber LTD in Mice Lacking MGluR2.” Science, vol. 273, American Association for the Advancement of Science, 1996, pp. 645–47, doi:10.1126/science.273.5275.645. short: M. Yokoi, K. Kobayashi, T. Manabe, T. Takahashi, I. Sakaguchi, G. Katsuura, R. Shigemoto, H. Ohishi, S. Nomura, K. Nakamura, K. Nakao, M. Katsuki, S. Nakanishi, Science 273 (1996) 645–647. date_created: 2018-12-11T11:58:27Z date_published: 1996-08-02T00:00:00Z date_updated: 2022-08-11T13:53:55Z day: '02' doi: 10.1126/science.273.5275.645 extern: '1' external_id: pmid: - '8662555 ' intvolume: ' 273' language: - iso: eng month: '08' oa_version: None page: 645 - 647 pmid: 1 publication: Science publication_identifier: issn: - 0036-8075 publication_status: published publisher: American Association for the Advancement of Science publist_id: '4327' quality_controlled: '1' scopus_import: '1' status: public title: Impairment of hippocampal mossy fiber LTD in mice lacking mGluR2 type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 273 year: '1996' ... --- _id: '2726' abstract: - lang: eng text: We investigate whether the eigenfunctions of the two-dimensional magnetic Schrödinger operator have a Gaussian decay of type exp(-Cx2) at infinity (the magnetic field is rotationally symmetric). We establish this decay if the energy (E) of the eigenfunction is below the bottom of the essential spectrum (B), and if the angular Fourier components of the external potential decay exponentially (real analyticity in the angle variable). We also demonstrate that almost the same decay is necessary. The behavior of C in the strong field limit and in the small (B - E) limit is also studied. acknowledgement: Partial support from the Hungarian National Foundation for Scientific Research, grant no. 1902. article_processing_charge: No article_type: original author: - first_name: László full_name: Erdös, László id: 4DBD5372-F248-11E8-B48F-1D18A9856A87 last_name: Erdös orcid: 0000-0001-5366-9603 citation: ama: Erdös L. Gaussian decay of the magnetic eigenfunctions. Geometric and Functional Analysis. 1996;6(2):231-248. doi:10.1007/BF02247886 apa: Erdös, L. (1996). Gaussian decay of the magnetic eigenfunctions. Geometric and Functional Analysis. Birkhäuser. https://doi.org/10.1007/BF02247886 chicago: Erdös, László. “Gaussian Decay of the Magnetic Eigenfunctions.” Geometric and Functional Analysis. Birkhäuser, 1996. https://doi.org/10.1007/BF02247886. ieee: L. Erdös, “Gaussian decay of the magnetic eigenfunctions,” Geometric and Functional Analysis, vol. 6, no. 2. Birkhäuser, pp. 231–248, 1996. ista: Erdös L. 1996. Gaussian decay of the magnetic eigenfunctions. Geometric and Functional Analysis. 6(2), 231–248. mla: Erdös, László. “Gaussian Decay of the Magnetic Eigenfunctions.” Geometric and Functional Analysis, vol. 6, no. 2, Birkhäuser, 1996, pp. 231–48, doi:10.1007/BF02247886. short: L. Erdös, Geometric and Functional Analysis 6 (1996) 231–248. date_created: 2018-12-11T11:59:17Z date_published: 1996-03-01T00:00:00Z date_updated: 2022-08-11T10:05:58Z day: '01' doi: 10.1007/BF02247886 extern: '1' intvolume: ' 6' issue: '2' language: - iso: eng month: '03' oa_version: None page: 231 - 248 publication: Geometric and Functional Analysis publication_identifier: issn: - 1016-443X publication_status: published publisher: Birkhäuser publist_id: '4166' quality_controlled: '1' scopus_import: '1' status: public title: Gaussian decay of the magnetic eigenfunctions type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 6 year: '1996' ... --- _id: '2725' abstract: - lang: eng text: We prove that the two dimensional free magnetic Schrödinger operator, with a fixed constant magnetic field and Dirichlet boundary conditions on a planar domain with a given area, attains its smallest possible eigenvalue if the domain is a disk. We also give some rough bounds on the lowest magnetic eigenvalue of the disk. author: - first_name: László full_name: László Erdös id: 4DBD5372-F248-11E8-B48F-1D18A9856A87 last_name: Erdös orcid: 0000-0001-5366-9603 citation: ama: Erdös L. Rayleigh-type isoperimetric inequality with a homogeneous magnetic field. Calculus of Variations and Partial Differential Equations. 1996;4(3):283-292. doi:10.1007/BF01254348 apa: Erdös, L. (1996). Rayleigh-type isoperimetric inequality with a homogeneous magnetic field. Calculus of Variations and Partial Differential Equations. Springer. https://doi.org/10.1007/BF01254348 chicago: Erdös, László. “Rayleigh-Type Isoperimetric Inequality with a Homogeneous Magnetic Field.” Calculus of Variations and Partial Differential Equations. Springer, 1996. https://doi.org/10.1007/BF01254348. ieee: L. Erdös, “Rayleigh-type isoperimetric inequality with a homogeneous magnetic field,” Calculus of Variations and Partial Differential Equations, vol. 4, no. 3. Springer, pp. 283–292, 1996. ista: Erdös L. 1996. Rayleigh-type isoperimetric inequality with a homogeneous magnetic field. Calculus of Variations and Partial Differential Equations. 4(3), 283–292. mla: Erdös, László. “Rayleigh-Type Isoperimetric Inequality with a Homogeneous Magnetic Field.” Calculus of Variations and Partial Differential Equations, vol. 4, no. 3, Springer, 1996, pp. 283–92, doi:10.1007/BF01254348. short: L. Erdös, Calculus of Variations and Partial Differential Equations 4 (1996) 283–292. date_created: 2018-12-11T11:59:16Z date_published: 1996-04-01T00:00:00Z date_updated: 2021-01-12T06:59:17Z day: '01' doi: 10.1007/BF01254348 extern: 1 intvolume: ' 4' issue: '3' month: '04' page: 283 - 292 publication: Calculus of Variations and Partial Differential Equations publication_status: published publisher: Springer publist_id: '4167' quality_controlled: 0 status: public title: Rayleigh-type isoperimetric inequality with a homogeneous magnetic field type: journal_article volume: 4 year: '1996' ... --- _id: '3553' abstract: - lang: eng text: Virtual environments open up new opportunities and challenges for geometric modeling systems. A general approach to geometric modeling suitable for the Cave Automatic Virtual Environment is described. The approach is based on alpha complexes, and some of its capabilities are demonstrated by applying it to the study of biomolecules. acknowledgement: We thank Ernst Miicke and Michael Facello for their work on the Alpha shape library, and Nataraj Akkiraju for his work on the surface triangulation library. We thank NCSA for providing access to the CAVE. article_processing_charge: No author: - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Ping full_name: Fu, Ping last_name: Fu - first_name: Jiang full_name: Quian, Jiang last_name: Quian citation: ama: 'Edelsbrunner H, Fu P, Quian J. Geometric modeling in CAVE. In: Proceedings of the ACM Symposium on Virtual Reality Software and Technology. ACM; 1996:35-41 and-193-194. doi:10.1145/3304181.3304190' apa: 'Edelsbrunner, H., Fu, P., & Quian, J. (1996). Geometric modeling in CAVE. In Proceedings of the ACM Symposium on Virtual Reality Software and Technology (pp. 35-41 and-193–194). Hong Kong: ACM. https://doi.org/10.1145/3304181.3304190' chicago: Edelsbrunner, Herbert, Ping Fu, and Jiang Quian. “Geometric Modeling in CAVE.” In Proceedings of the ACM Symposium on Virtual Reality Software and Technology, 35-41 and-193–94. ACM, 1996. https://doi.org/10.1145/3304181.3304190. ieee: H. Edelsbrunner, P. Fu, and J. Quian, “Geometric modeling in CAVE,” in Proceedings of the ACM Symposium on Virtual Reality Software and Technology, Hong Kong, 1996, pp. 35-41 and-193–194. ista: 'Edelsbrunner H, Fu P, Quian J. 1996. Geometric modeling in CAVE. Proceedings of the ACM Symposium on Virtual Reality Software and Technology. VRST: Symposium on Virtual Reality Software and Technology, 35-41 and-193–194.' mla: Edelsbrunner, Herbert, et al. “Geometric Modeling in CAVE.” Proceedings of the ACM Symposium on Virtual Reality Software and Technology, ACM, 1996, pp. 35-41 and-193–94, doi:10.1145/3304181.3304190. short: H. Edelsbrunner, P. Fu, J. Quian, in:, Proceedings of the ACM Symposium on Virtual Reality Software and Technology, ACM, 1996, pp. 35-41 and-193–194. conference: end_date: 1996-07-04 location: Hong Kong name: 'VRST: Symposium on Virtual Reality Software and Technology' start_date: 1996-07-01 date_created: 2018-12-11T12:03:56Z date_published: 1996-07-01T00:00:00Z date_updated: 2022-08-10T13:42:02Z day: '01' doi: 10.1145/3304181.3304190 extern: '1' language: - iso: eng month: '07' oa_version: None page: 35-41 and - 193-194 publication: Proceedings of the ACM Symposium on Virtual Reality Software and Technology publication_identifier: isbn: - '9780897918251' publication_status: published publisher: ACM publist_id: '2832' quality_controlled: '1' status: public title: Geometric modeling in CAVE type: conference user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 year: '1996' ... --- _id: '3635' abstract: - lang: eng text: Experiments on Drosophila suggest that genetic recombination may result in lowered fitness of progeny (a 'recombination load'). This has been interpreted as evidence either for a direct effect of recombination on fitness, or for the maintenance of linkage disequilibria by epistatic selection. Here we show that such a recombination load is to be expected even if selection favours increased genetic recombination. This is because of the fact that, although a modifier may suffer an immediate loss of fitness if it increases recombination, it eventually becomes associated with a higher additive genetic variance in fitness, which allows a faster response to direction selection. This argument applies to mutation-selection balance with synergistic epistasis, directional selection on quantitative traits, and ectopic exchange among transposable elements. Further experiments are needed to determine whether the selection against recombination due to the immediate load is outweighed by the increased additive variance in fitness produced by recombination. article_processing_charge: No article_type: original author: - first_name: Brian full_name: Charlesworth, Brian last_name: Charlesworth - first_name: Nicholas H full_name: Barton, Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 citation: ama: Charlesworth B, Barton NH. Recombination load associated with selection for increased recombination. Genetical Research. 1996;67(1):27-41. doi:10.1017/S0016672300033450 apa: Charlesworth, B., & Barton, N. H. (1996). Recombination load associated with selection for increased recombination. Genetical Research. Cambridge University Press. https://doi.org/10.1017/S0016672300033450 chicago: Charlesworth, Brian, and Nicholas H Barton. “Recombination Load Associated with Selection for Increased Recombination.” Genetical Research. Cambridge University Press, 1996. https://doi.org/10.1017/S0016672300033450. ieee: B. Charlesworth and N. H. Barton, “Recombination load associated with selection for increased recombination,” Genetical Research, vol. 67, no. 1. Cambridge University Press, pp. 27–41, 1996. ista: Charlesworth B, Barton NH. 1996. Recombination load associated with selection for increased recombination. Genetical Research. 67(1), 27–41. mla: Charlesworth, Brian, and Nicholas H. Barton. “Recombination Load Associated with Selection for Increased Recombination.” Genetical Research, vol. 67, no. 1, Cambridge University Press, 1996, pp. 27–41, doi:10.1017/S0016672300033450. short: B. Charlesworth, N.H. Barton, Genetical Research 67 (1996) 27–41. date_created: 2018-12-11T12:04:21Z date_published: 1996-02-01T00:00:00Z date_updated: 2022-08-10T12:38:51Z day: '01' doi: 10.1017/S0016672300033450 extern: '1' external_id: pmid: - '8919888 ' intvolume: ' 67' issue: '1' language: - iso: eng month: '02' oa_version: None page: 27 - 41 pmid: 1 publication: Genetical Research publication_identifier: issn: - 0016-6723 publication_status: published publisher: Cambridge University Press publist_id: '2748' quality_controlled: '1' scopus_import: '1' status: public title: Recombination load associated with selection for increased recombination type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 67 year: '1996' ... --- _id: '3634' abstract: - lang: eng text: The evolutionary processes responsible for adaptation and speciation on islands differ in several ways from those on the mainland. Most attention has been given to the random genetic drift that arises when a population is founded from just a few colonizing genomes. Theoretical obstacles to 'founder effect speciation' are discussed, together with recent proposals for avoiding them. It is argued that although certain kinds of epistasis can facilitate the evolution of strong reproductive isolation, this favours divergence by selection as much as by random drift. article_processing_charge: No article_type: original author: - first_name: Nicholas H full_name: Barton, Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 - first_name: James full_name: Mallet, James last_name: Mallet citation: ama: Barton NH, Mallet J. Natural selection and random genetic drift as causes of evolution on islands. Philosophical Transactions of the Royal Society of London Series B, Biological Sciences. 1996;351(1341):785-795. doi:10.1098/rstb.1996.0073 apa: Barton, N. H., & Mallet, J. (1996). Natural selection and random genetic drift as causes of evolution on islands. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society of London. https://doi.org/10.1098/rstb.1996.0073 chicago: Barton, Nicholas H, and James Mallet. “Natural Selection and Random Genetic Drift as Causes of Evolution on Islands.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society of London, 1996. https://doi.org/10.1098/rstb.1996.0073. ieee: N. H. Barton and J. Mallet, “Natural selection and random genetic drift as causes of evolution on islands,” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 351, no. 1341. Royal Society of London, pp. 785–795, 1996. ista: Barton NH, Mallet J. 1996. Natural selection and random genetic drift as causes of evolution on islands. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 351(1341), 785–795. mla: Barton, Nicholas H., and James Mallet. “Natural Selection and Random Genetic Drift as Causes of Evolution on Islands.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 351, no. 1341, Royal Society of London, 1996, pp. 785–95, doi:10.1098/rstb.1996.0073. short: N.H. Barton, J. Mallet, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 351 (1996) 785–795. date_created: 2018-12-11T12:04:21Z date_published: 1996-06-29T00:00:00Z date_updated: 2022-08-10T12:57:10Z day: '29' doi: 10.1098/rstb.1996.0073 extern: '1' external_id: pmid: - '8693020' intvolume: ' 351' issue: '1341' language: - iso: eng month: '06' oa_version: None page: 785 - 795 pmid: 1 publication: Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences publication_identifier: issn: - 0962-8436 publication_status: published publisher: Royal Society of London publist_id: '2749' quality_controlled: '1' scopus_import: '1' status: public title: Natural selection and random genetic drift as causes of evolution on islands type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 351 year: '1996' ... --- _id: '4024' abstract: - lang: eng text: We have developed general modeling software for a Cave Automatic Virtual Environment (CAVE); one of its applications is modeling 3D protein structures, generating both outside-in and inside-out views of geometric models. An advantage of the CAVE over other virtual environments is that multiple viewers can observe the same scene at the same time and place. Our software is scalable-from high-end virtual environments such as the CAVE, to mid-range immersive desktop systems, down to low-end graphics workstations. In the current configuration, a parallel Silicon Graphics Power Challenge supercomputer architecture performs the computationally intensive construction of surface patches remotely, and sends the results through the I-WAY (Information Wide Area Year) using VBNS (Very-high-Bandwidth Network Systems) to the graphics machines that drive the CAVE and our graphics visualization software, Valvis (Virtual ALpha shapes VISualizer). article_processing_charge: No article_type: original author: - first_name: Nataraj full_name: Akkiraju, Nataraj last_name: Akkiraju - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Ping full_name: Fu, Ping last_name: Fu - first_name: Jiang full_name: Qian, Jiang last_name: Qian citation: ama: Akkiraju N, Edelsbrunner H, Fu P, Qian J. Viewing geometric protein structures from inside a CAVE. IEEE Computer Graphics and Applications. 1996;16(4):58-61. doi:10.1109/38.511855 apa: Akkiraju, N., Edelsbrunner, H., Fu, P., & Qian, J. (1996). Viewing geometric protein structures from inside a CAVE. IEEE Computer Graphics and Applications. IEEE. https://doi.org/10.1109/38.511855 chicago: Akkiraju, Nataraj, Herbert Edelsbrunner, Ping Fu, and Jiang Qian. “Viewing Geometric Protein Structures from inside a CAVE.” IEEE Computer Graphics and Applications. IEEE, 1996. https://doi.org/10.1109/38.511855. ieee: N. Akkiraju, H. Edelsbrunner, P. Fu, and J. Qian, “Viewing geometric protein structures from inside a CAVE,” IEEE Computer Graphics and Applications, vol. 16, no. 4. IEEE, pp. 58–61, 1996. ista: Akkiraju N, Edelsbrunner H, Fu P, Qian J. 1996. Viewing geometric protein structures from inside a CAVE. IEEE Computer Graphics and Applications. 16(4), 58–61. mla: Akkiraju, Nataraj, et al. “Viewing Geometric Protein Structures from inside a CAVE.” IEEE Computer Graphics and Applications, vol. 16, no. 4, IEEE, 1996, pp. 58–61, doi:10.1109/38.511855. short: N. Akkiraju, H. Edelsbrunner, P. Fu, J. Qian, IEEE Computer Graphics and Applications 16 (1996) 58–61. date_created: 2018-12-11T12:06:30Z date_published: 1996-07-01T00:00:00Z date_updated: 2022-08-09T13:32:21Z day: '01' doi: 10.1109/38.511855 extern: '1' intvolume: ' 16' issue: '4' language: - iso: eng month: '07' oa_version: None page: 58 - 61 publication: IEEE Computer Graphics and Applications publication_identifier: issn: - 0018-9162 publication_status: published publisher: IEEE publist_id: '2101' quality_controlled: '1' scopus_import: '1' status: public title: Viewing geometric protein structures from inside a CAVE type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 16 year: '1996' ... --- _id: '4025' abstract: - lang: eng text: Questions of chemical reactivity can often be cast as questions of molecular geometry. Common geometric models for proteins and other molecules are the space-filling diagram, the solvent accessible surface and the molecular surface. In this paper we present a new approach to triangulating the surface of a molecule under the three models, which is fast, robust, and results in topologically correct triangulations. Our computations are based on a simplicial complex dual to the molecule models. All proposed algorithms are parallelizable. acknowledgement: 'The research of both authors is partially supported by the Office of Naval Research. Herbert Edelsbrunner is also supported through the Alan T. Waterman award, grant CCR-9118874. ' article_processing_charge: No article_type: original author: - first_name: Nataraj full_name: Akkiraju, Nataraj last_name: Akkiraju - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 citation: ama: Akkiraju N, Edelsbrunner H. Triangulating the surface of a molecule. Discrete Applied Mathematics. 1996;71(1-3):5-22. doi:10.1016/S0166-218X(96)00054-6 apa: Akkiraju, N., & Edelsbrunner, H. (1996). Triangulating the surface of a molecule. Discrete Applied Mathematics. Elsevier. https://doi.org/10.1016/S0166-218X(96)00054-6 chicago: Akkiraju, Nataraj, and Herbert Edelsbrunner. “Triangulating the Surface of a Molecule.” Discrete Applied Mathematics. Elsevier, 1996. https://doi.org/10.1016/S0166-218X(96)00054-6. ieee: N. Akkiraju and H. Edelsbrunner, “Triangulating the surface of a molecule,” Discrete Applied Mathematics, vol. 71, no. 1–3. Elsevier, pp. 5–22, 1996. ista: Akkiraju N, Edelsbrunner H. 1996. Triangulating the surface of a molecule. Discrete Applied Mathematics. 71(1–3), 5–22. mla: Akkiraju, Nataraj, and Herbert Edelsbrunner. “Triangulating the Surface of a Molecule.” Discrete Applied Mathematics, vol. 71, no. 1–3, Elsevier, 1996, pp. 5–22, doi:10.1016/S0166-218X(96)00054-6. short: N. Akkiraju, H. Edelsbrunner, Discrete Applied Mathematics 71 (1996) 5–22. date_created: 2018-12-11T12:06:30Z date_published: 1996-12-05T00:00:00Z date_updated: 2022-08-09T14:06:12Z day: '05' doi: 10.1016/S0166-218X(96)00054-6 extern: '1' intvolume: ' 71' issue: 1-3 language: - iso: eng main_file_link: - open_access: '1' url: https://www.sciencedirect.com/science/article/pii/S0166218X96000546?via%3Dihub month: '12' oa: 1 oa_version: Published Version page: 5 - 22 publication: Discrete Applied Mathematics publication_identifier: issn: - 0166-218X publication_status: published publisher: Elsevier publist_id: '2102' quality_controlled: '1' scopus_import: '1' status: public title: Triangulating the surface of a molecule type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 71 year: '1996' ... --- _id: '4151' abstract: - lang: eng text: 'Jaws and branchial arches together are a basic, segmented feature of the vertebrate head, Seven arches develop in the zebrafish embryo (Danio rerio), derived largely from neural crest cells that form the cartilaginous skeleton, In this and the following paper we describe the phenotypes of 109 arch mutants, focusing here on three classes that affect the posterior pharyngeal arches, including the hyoid and five gill-bearing arches, In lockjaw, the hyoid arch is strongly reduced and subsets of branchial arches do not develop, Mutants of a large second class, designated the flathead group, lack several adjacent branchial arches and their associated cartilages. Five alleles at the flathead locus all lead to larvae that lack arches 4-6, Among 34 other flathead group members complementation tests are incomplete, but at least six unique phenotypes can be distinguished, These all delete continuous stretches of adjacent branchial arches and unpaired cartilages in the ventral midline, Many show cell death in the midbrain, from which some neural crest precursors of the arches originate, lockjaw and a few mutants in the flathead group, including pistachio, affect both jaw cartilage and pigmentation, reflecting essential functions of these genes in at least two neural crest lineages, Mutants of a third class, including boxer, dackel and pincher, affect pectoral fins and axonal trajectories in the brain, as well as the arches. Their skeletal phenotypes suggest that they disrupt cartilage morphogenesis in all arches, Our results suggest that there are sets of genes that: (1) specify neural crest cells in groups of adjacent head segments, and (2) function in common genetic pathways in a variety of tissues including the brain, pectoral fins and pigment cells as well as pharyngeal arches.' acknowledgement: We thank Drs Charles Kimmel, Philip Ingham, Paula Mabee and members of the Ingham lab for critical comments on the manuscript. article_processing_charge: No article_type: original author: - first_name: Thomas full_name: Schilling, Thomas last_name: Schilling - first_name: Tatjana full_name: Piotrowski, Tatjana last_name: Piotrowski - first_name: Heiner full_name: Grandel, Heiner last_name: Grandel - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Torsten full_name: Trowe, Torsten last_name: Trowe - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: 'Schilling T, Piotrowski T, Grandel H, et al. Jaw and branchial arch mutants in zebrafish I: Branchial arches. Development. 1996;123(1):329-344. doi:10.1242/dev.123.1.329' apa: 'Schilling, T., Piotrowski, T., Grandel, H., Brand, M., Heisenberg, C.-P. J., Jiang, Y., … Nüsslein Volhard, C. (1996). Jaw and branchial arch mutants in zebrafish I: Branchial arches. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.329' chicago: 'Schilling, Thomas, Tatjana Piotrowski, Heiner Grandel, Michael Brand, Carl-Philipp J Heisenberg, Yunjin Jiang, Dirk Beuchle, et al. “Jaw and Branchial Arch Mutants in Zebrafish I: Branchial Arches.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.329.' ieee: 'T. Schilling et al., “Jaw and branchial arch mutants in zebrafish I: Branchial arches,” Development, vol. 123, no. 1. Company of Biologists, pp. 329–344, 1996.' ista: 'Schilling T, Piotrowski T, Grandel H, Brand M, Heisenberg C-PJ, Jiang Y, Beuchle D, Hammerschmidt M, Kane D, Mullins M, Van Eeden F, Kelsh R, Furutani Seiki M, Granato M, Haffter P, Odenthal J, Warga R, Trowe T, Nüsslein Volhard C. 1996. Jaw and branchial arch mutants in zebrafish I: Branchial arches. Development. 123(1), 329–344.' mla: 'Schilling, Thomas, et al. “Jaw and Branchial Arch Mutants in Zebrafish I: Branchial Arches.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 329–44, doi:10.1242/dev.123.1.329.' short: T. Schilling, T. Piotrowski, H. Grandel, M. Brand, C.-P.J. Heisenberg, Y. Jiang, D. Beuchle, M. Hammerschmidt, D. Kane, M. Mullins, F. Van Eeden, R. Kelsh, M. Furutani Seiki, M. Granato, P. Haffter, J. Odenthal, R. Warga, T. Trowe, C. Nüsslein Volhard, Development 123 (1996) 329–344. date_created: 2018-12-11T12:07:15Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-08T08:41:00Z day: '01' doi: 10.1242/dev.123.1.329 extern: '1' external_id: pmid: - '9007253' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 329 - 344 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1968' quality_controlled: '1' scopus_import: '1' status: public title: 'Jaw and branchial arch mutants in zebrafish I: Branchial arches' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4166' abstract: - lang: eng text: In a large scale screen for mutants with defects in the embryonic development of the zebrafish we identified mutations in four genes, floating head (flh), memo (mom), no tail (ntl), and dec, that are required for early notochord formation. Mutations in flh and ntl have been described previously, while mom and doe are newly identified genes. Mutant mom embryos lack a notochord in the trunk, and trunk somites from the right and left side of the embryo fuse underneath the neural tube. In this respect morn appears similar to flh. In contrast, notochord precursor cells are present in both ntl and doc embryos. In order to gain a greater understanding of the phenotypes, we have analysed the expression of several axial mesoderm markers in mutant embryos of all four genes. In flh and mom, Ntl expression is normal in the germ ring and tailbud, while the expression of Nd and other notochord markers in the axial mesodermal region is disrupted. Nd expression is normal in doc embryos until early semitic stages, when there is a reduction in expression which is first seen in anterior regions of the embryo. This suggests a function for doc in the maintenance of ntl expression. Other notochord markers such as twist, sonic hedgehog and axial are not expressed in the axial mesoderm of ntl embryos, their expression parallels the expression of ntl in the axial mesoderm of mutant doc,flh and mom embryos, indicating that ntl is required for the expression of these markers. The role of doc in the expression of the notochord markers appears indirect via ntl. Floor plate formation is disrupted in most regions in flh and mom mutant embryos but is present in mutant ntl and doc embryos. In mutant embryos with strong ntl alleles the band of cells expressing floor plate markers is broadened. A similar broadening is also observed in the axial mesoderm underlying the floor plate of ntl embryos, suggesting a direct involvement of the notochord precursor cells in floor plate induction. Mutations in al of these four genes result in embryos lacking a horizontal myoseptum and muscle pioneer cells, both of which are thought to be induced by the notochord. These somite defects can be traced back to an impairment of the specification of the adaxial cells during early stages of development. Transplantation of wild-type cells into mutant doc embryos reveals that wild-type notochord cells are sufficient to induce horizontal myoseptum formation in the flanking mutant tissue. Thus dec, like flh and ntl, acts cell autonomously in the notochord. In addition to the four mutants with defects in early notochord formation, we have isolated 84 mutants, defining at least 15 genes, with defects in later stages of notochord development. These are listed in an appendix to this study. acknowledgement: We thank Bob Riggleman for providing the twist probe prior to publication, William Talbot, Anne Melby, Marnie Halpern and Chuck Kimmel for communicating results prior to publication, Bill Trevarrow for the flhn1 allele, Stefan Schulte-Merker for providing the ntl antibody, and N. H. Patel for providing the Eng antibody (4D9). We thank Klaus Trummler, Frank Uhlmann and Mathias Metz for assistance in the analysis of the ntl alleles, Silke Rudolph for technical assistance, Heike Schauerte for helping with the in situ hybridization, and Joel Wilson and Cornelia Fricke for their help with the fish work, and finally Tanya Whitfield, Francisco Pelegri, Darren Gilmour and Stefan Schulte-Merker for discussion and help with the manuscript. article_processing_charge: No article_type: original author: - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Elisabeth full_name: Vogelsang, Elisabeth last_name: Vogelsang - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Miguel full_name: Allende, Miguel last_name: Allende - first_name: Eric full_name: Weinberg, Eric last_name: Weinberg - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Odenthal J, Haffter P, Vogelsang E, et al. Mutations affecting the formation of the notochord in the zebrafish, Danio rerio. Development. 1996;123(1):103-115. doi:10.1242/dev.123.1.103 apa: Odenthal, J., Haffter, P., Vogelsang, E., Brand, M., Van Eeden, F., Furutani Seiki, M., … Nüsslein Volhard, C. (1996). Mutations affecting the formation of the notochord in the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.103 chicago: Odenthal, Jörg, Pascal Haffter, Elisabeth Vogelsang, Michael Brand, Fredericus Van Eeden, Makoto Furutani Seiki, Michael Granato, et al. “Mutations Affecting the Formation of the Notochord in the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.103. ieee: J. Odenthal et al., “Mutations affecting the formation of the notochord in the zebrafish, Danio rerio,” Development, vol. 123, no. 1. Company of Biologists, pp. 103–115, 1996. ista: Odenthal J, Haffter P, Vogelsang E, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Kelsh R, Mullins M, Warga R, Allende M, Weinberg E, Nüsslein Volhard C. 1996. Mutations affecting the formation of the notochord in the zebrafish, Danio rerio. Development. 123(1), 103–115. mla: Odenthal, Jörg, et al. “Mutations Affecting the Formation of the Notochord in the Zebrafish, Danio Rerio.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 103–15, doi:10.1242/dev.123.1.103. short: J. Odenthal, P. Haffter, E. Vogelsang, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, R. Kelsh, M. Mullins, R. Warga, M. Allende, E. Weinberg, C. Nüsslein Volhard, Development 123 (1996) 103–115. date_created: 2018-12-11T12:07:21Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-08T08:06:12Z day: '01' doi: 10.1242/dev.123.1.103 extern: '1' external_id: pmid: - '9007233' intvolume: ' 123' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://journals.biologists.com/dev/article/123/1/103/39325/Mutations-affecting-the-formation-of-the-notochord month: '12' oa: 1 oa_version: Published Version page: 103 - 115 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1954' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting the formation of the notochord in the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4170' abstract: - lang: eng text: We identified 6 genes that are essential for specifying ventral regions of the early zebrafish embryo, Mutations in these genes cause an expansion of structures normally derived from dorsal-lateral regions of the blastula at the expense of ventrally derived structures, A series of phenotypes of varied strengths is observed with different alleles of these mutants, The weakest phenotype is a reduction in the ventral tail fin, observed as a dominant phenotype of swirl, piggytail, and somitabun and a recessive phenotype of min fin, lost-a-fin and some piggytail alleles, With increasing phenotypic strength, the blood and pronephric anlagen are also reduced or absent, while the paraxial mesoderm and anterior neuroectoderm is progressively expanded, In the strong phenotypes, displayed by homozygous embryos of snailhouse, swirl and somitabun, the somites circle around the embryo and the midbrain region is expanded laterally, Several mutations in this group of genes are semidominant as well as recessive indicating a strong dosage sensitivity of the processes involved, Mutations in the piggytail gene display an unusual dominance that depends on both a maternal and zygotic heterozygous genotype, while somitabun is a fully penetrant dominant maternal-effect mutation, The similar and overlapping phenotypes of mutants of the 6 genes identified suggest that they function in a common pathway, which begins in oogenesis, but also depends on factors provided after the onset of zygotic transcription, presumably during blastula stages, This pathway provides ventral positional information, counteracting the dorsalizing instructions of the organizer, which is localized in the dorsal shield. acknowledgement: 'We would like to thank: Eric Weinberg, and David Ransom and Leonard Zon for providing the myoD and gata1 cDNA clone, respectively, prior to publication; David Ransom for pointing out the histological blood staining method; J. S. Joly for the eve1 cDNA clone; Mary Ellen Lane, Siegfried Roth, Stefan Schulte-Merker, Herbert Steinbeiser for helpful comments on the manuscript; and very special thanks to Karin Finger-Miller for technical support, as well as to Hans-Martin Maischein, Amanda Wilson, Jörg Zeller, and Cosima Fabian. This work was supported by an NIH postdoctoral fellowship to M. C. M.' article_processing_charge: No article_type: original author: - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: 'Mullins M, Hammerschmidt M, Kane D, et al. Genes establishing dorsoventral pattern formation in the zebrafish embryo: The ventral specifying genes. Development. 1996;123(1):81-93. doi:10.1242/dev.123.1.81' apa: 'Mullins, M., Hammerschmidt, M., Kane, D., Odenthal, J., Brand, M., Van Eeden, F., … Nüsslein Volhard, C. (1996). Genes establishing dorsoventral pattern formation in the zebrafish embryo: The ventral specifying genes. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.81' chicago: 'Mullins, Mary, Matthias Hammerschmidt, Donald Kane, Jörg Odenthal, Michael Brand, Fredericus Van Eeden, Makoto Furutani Seiki, et al. “Genes Establishing Dorsoventral Pattern Formation in the Zebrafish Embryo: The Ventral Specifying Genes.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.81.' ieee: 'M. Mullins et al., “Genes establishing dorsoventral pattern formation in the zebrafish embryo: The ventral specifying genes,” Development, vol. 123, no. 1. Company of Biologists, pp. 81–93, 1996.' ista: 'Mullins M, Hammerschmidt M, Kane D, Odenthal J, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Haffter P, Heisenberg C-PJ, Jiang Y, Kelsh R, Nüsslein Volhard C. 1996. Genes establishing dorsoventral pattern formation in the zebrafish embryo: The ventral specifying genes. Development. 123(1), 81–93.' mla: 'Mullins, Mary, et al. “Genes Establishing Dorsoventral Pattern Formation in the Zebrafish Embryo: The Ventral Specifying Genes.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 81–93, doi:10.1242/dev.123.1.81.' short: M. Mullins, M. Hammerschmidt, D. Kane, J. Odenthal, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, P. Haffter, C.-P.J. Heisenberg, Y. Jiang, R. Kelsh, C. Nüsslein Volhard, Development 123 (1996) 81–93. date_created: 2018-12-11T12:07:22Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-05T12:01:06Z day: '01' doi: 10.1242/dev.123.1.81 extern: '1' external_id: pmid: - '9007231' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 81 - 93 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1951' quality_controlled: '1' scopus_import: '1' status: public title: 'Genes establishing dorsoventral pattern formation in the zebrafish embryo: The ventral specifying genes' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4164' abstract: - lang: eng text: In a large-scale screen for mutants with defects in embryonic development we identified 17 genes (65 mutants) specifically required for the development of xanthophores, We provide evidence that these genes are required for three different aspects of xanthophore development, (1) Pigment cell formation and migration (pfeffer and salt); (2) pigment synthesis (edison, yobo, yocca and brie) and (3) pigment translocation (esrom, tilsit and tofu). The number of xanthophore cells that appear in the body is reduced in embryos with mutations in the two genes, salt and pfeffer. In heterozygous and homozygous salt and pfeffer adults, the melanophore stripes are interrupted, indicating that xanthophore cells have an important function in adult melanophore pattern formation, Most other genes affect only larval pigmentation, In embryos mutant for edison, yobo, yocca and brie, differences in pteridine synthesis can be observed under UV light and by thin-layer chromatography. Homozygous mutant females of yobo show a recessive maternal effect, Embryonic development is slowed down and embryos display head and tail truncations, Xanthophores in larvae mutant in the three genes esrom, tilsit and tofu appear less spread out, In addition, these mutants display a defect in retinotectal axon pathfinding, These mutations may affect xanthophore pigment distribution within the cells or xanthophore cell shape, Mutations in seven genes affecting xanthophore pigmentation remain unclassified. acknowledgement: We thank Silke Rudolph for technical assistance, Joel Wilson and Cornelia Fricke for their help in the fish work and the thin layer chromatography, and Darren Gilmour for help with the manuscript. article_processing_charge: No article_type: original author: - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Karin full_name: Rossnagel, Karin last_name: Rossnagel - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Elisabeth full_name: Vogelsang, Elisabeth last_name: Vogelsang - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Odenthal J, Rossnagel K, Haffter P, et al. Mutations affecting xanthophore pigmentation in the zebrafish, Danio rerio. Development. 1996;123(1):391-398. doi:10.1242/dev.123.1.391 apa: Odenthal, J., Rossnagel, K., Haffter, P., Kelsh, R., Vogelsang, E., Brand, M., … Nüsslein Volhard, C. (1996). Mutations affecting xanthophore pigmentation in the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.391 chicago: Odenthal, Jörg, Karin Rossnagel, Pascal Haffter, Robert Kelsh, Elisabeth Vogelsang, Michael Brand, Fredericus Van Eeden, et al. “Mutations Affecting Xanthophore Pigmentation in the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.391. ieee: J. Odenthal et al., “Mutations affecting xanthophore pigmentation in the zebrafish, Danio rerio,” Development, vol. 123, no. 1. Company of Biologists, pp. 391–398, 1996. ista: Odenthal J, Rossnagel K, Haffter P, Kelsh R, Vogelsang E, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Mullins M, Nüsslein Volhard C. 1996. Mutations affecting xanthophore pigmentation in the zebrafish, Danio rerio. Development. 123(1), 391–398. mla: Odenthal, Jörg, et al. “Mutations Affecting Xanthophore Pigmentation in the Zebrafish, Danio Rerio.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 391–98, doi:10.1242/dev.123.1.391. short: J. Odenthal, K. Rossnagel, P. Haffter, R. Kelsh, E. Vogelsang, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, M. Mullins, C. Nüsslein Volhard, Development 123 (1996) 391–398. date_created: 2018-12-11T12:07:20Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-08T08:08:51Z day: '01' doi: 10.1242/dev.123.1.391 extern: '1' external_id: pmid: - '9007257 ' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 391 - 398 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1955' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting xanthophore pigmentation in the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4212' abstract: - lang: eng text: In a large-scale screen, we isolated mutants displaying a specific visible phenotype in embryos or early larvae of the zebrafish, Danio rerio. Males were mutagenized with ethylnitrosourea (ENU) and F-2 families of single pair matings between sibling F-l fish, heterozygous for a mutagenized genome, were raised. Egg lays were obtained from several crosses between F-2 siblings, resulting in scoring of 3857 mutagenized genomes. F-3 progeny were scored at the second, third and sixth day of development, using a stereomicroscope. In a subsequent screen, fixed embryos were analyzed for correct retinotectal projection. A total of 4264 mutants were identified. Two thirds of the mutants displaying rather general abnormalities were eventually discarded. We kept and characterized 1163 mutants. In complementation crosses performed between mutants with similar phenotypes, 894 mutants have been assigned to 372 genes. The average allele frequency is 2.4. We identified genes involved in early development, notochord, brain, spinal cord, somites, muscles, heart, circulation, blood, skin, fin, eye, otic vesicle, jaw and branchial arches, pigment pattern, pigment formation, gut, liver, motility and touch response. Our collection contains alleles of almost all previously described zebrafish mutants. From the allele frequencies and other considerations we estimate that the 372 genes defined by the mutants probably represent more than half of all genes that could have been discovered using the criteria of our screen. Here we give an overview of the spectrum of mutant phenotypes obtained, and discuss the limits and the potentials of a genetic saturation screen in the zebrafish. acknowledgement: "This work was a collaborative effort in which a large number of people participated during all or part of the three years of raising the families, screening and evaluation of the mutants. We thank Rachel Warga, Tatjana Piotrowski, Francisco Pelegri, Karin Rossnagel and Hans-Martin Maischein for collaboration at the beginning and the end of the screening and evaluation periods respectively; Hans-Georg Frohnhöfer for fish health care and for establishing the Tübingen zebrafish stockcenter; and Wolfgang Driever, Marc Fishman and collaborators, for sharing unpublished results. We enjoyed the visits of Alison Brownlie, Jau-Nian Chen, Nancy Hopkins, Corinne Houart, Shuo Lin, David Ransom, Thomas Schilling, Tanya Whitfield and Catherine Willet, who participated in the analysis of individual mutant classes. We also want to thank many undergraduate students from the Tübingen University for conscientious and efficient help in the maintenance and identification of fish, and Torsten Trowe, Rolf Karlstrom, Barbara Grunwald and Friedrich Bonhoeffer for pleasant and interesting conversations and collaborations. We thank the staff of our workshop for patience, \r\n Inventiveness and a very large number of fish containers. We thank Herwig Baier, Robert Geisler, Darren Gilmour,\r\nNancy Hopkins, Suresh Jesuthasan, Gerd Jürgens, Francisco Pelegri, Siegfried Roth, Stefan Schulte-Merker, Ralf Sommer, Daniel St Johnston and Tanya Whitfield, for many helpful suggestions on the manuscript; Robert Geisler for invaluable help with computers, cameras and colour printers, and the Tübingen fly group for interest, endless patience and support." article_processing_charge: No article_type: original author: - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Elisabeth full_name: Vogelsang, Elisabeth last_name: Vogelsang - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Ursula full_name: Schach, Ursula last_name: Schach - first_name: Cosima full_name: Fabian, Cosima last_name: Fabian - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Haffter P, Granato M, Brand M, et al. The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development. 1996;123(1):1-36. doi:10.1242/dev.123.1.1 apa: Haffter, P., Granato, M., Brand, M., Mullins, M., Hammerschmidt, M., Kane, D., … Nüsslein Volhard, C. (1996). The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.1 chicago: Haffter, Pascal, Michael Granato, Michael Brand, Mary Mullins, Matthias Hammerschmidt, Donald Kane, Jörg Odenthal, et al. “The Identification of Genes with Unique and Essential Functions in the Development of the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.1 . ieee: P. Haffter et al., “The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio,” Development, vol. 123, no. 1. Company of Biologists, pp. 1–36, 1996. ista: Haffter P, Granato M, Brand M, Mullins M, Hammerschmidt M, Kane D, Odenthal J, Van Eeden F, Jiang Y, Heisenberg C-PJ, Kelsh R, Furutani Seiki M, Vogelsang E, Beuchle D, Schach U, Fabian C, Nüsslein Volhard C. 1996. The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development. 123(1), 1–36. mla: Haffter, Pascal, et al. “The Identification of Genes with Unique and Essential Functions in the Development of the Zebrafish, Danio Rerio.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 1–36, doi:10.1242/dev.123.1.1 . short: P. Haffter, M. Granato, M. Brand, M. Mullins, M. Hammerschmidt, D. Kane, J. Odenthal, F. Van Eeden, Y. Jiang, C.-P.J. Heisenberg, R. Kelsh, M. Furutani Seiki, E. Vogelsang, D. Beuchle, U. Schach, C. Fabian, C. Nüsslein Volhard, Development 123 (1996) 1–36. date_created: 2018-12-11T12:07:37Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T14:41:37Z day: '01' doi: '10.1242/dev.123.1.1 ' extern: '1' external_id: pmid: - '9007226 ' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 1 - 36 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1905' quality_controlled: '1' scopus_import: '1' status: public title: The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4214' abstract: - lang: eng text: 'Zebrafish embryos and larvae have stage-specific patterns of motility or locomotion, Two embryonic structures accomplish this behavior: the central nervous system (CNS) and skeletal muscles. To identify genes that are functionally involved in mediating and controlling different patterns of embryonic and larval motility, we included a simple touch response test in our zebrafish large-scale genetic screen, In total we identified 166 mutants with specific defects in embryonic motility. These mutants fall into 14 phenotypically distinct groups comprising at least 48 genes, Here we describe the various phenotypic groups including mutants with no or reduced motility, mechanosensory defective mutants, ''spastic'' mutants, circling mutants and motor circuit defective mutants, In 63 mutants, defining 18 genes, striation of semitic muscles is reduced, Phenotypic analysis provides evidence that these 18 genes have distinct and consecutive functions during semitic muscle development. The genes sloth (slo) and frozen (fro) already act during myoblast differentiation, while 13 genes appear to function later, in the formation of myofibers and the organization of sarcomeres, Mutations in four other genes result in muscle-specific degeneration, 103 mutations, defining at least 30 genes, cause no obvious defects in muscle formation and may instead affect neuronal development. Analysis of the behavioral defects suggests that these genes participate in the diverse locomotion patterns observed, such as touch response, rhythmic tail movements, equilibrium control, or that they simply confer general motility to the animal, In some of these mutants specific defects in the developing nervous system are detected, Mutations in two genes, nevermind (nev) and macho (mao), affect axonal projection in the optic tectum, whereas axon formation and elongation of motorneurons are disrupted by mutations in the diwanka (diw) and the unplugged (unp) genes.' acknowledgement: We would like to thank C. Kimmel, J. Eisen and M. Westerfield for providing the nic and fub mutant strains used for complementation and for the znp1 antibody. In addition we thank Tanja Whitfield and Suresh Jesuthesan for critical reading of the manuscript. This work was supported by a DFG postdoctoral fellowship Gr 1370/1-1 to M.G. article_processing_charge: No article_type: original author: - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Ursula full_name: Schach, Ursula last_name: Schach - first_name: Torsten full_name: Trowe, Torsten last_name: Trowe - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Granato M, Van Eeden F, Schach U, et al. Genes controlling and mediating locomotion behavior of the zebrafish embryo and larva. Development. 1996;123:399-413. doi:10.1242/dev.123.1.399 apa: Granato, M., Van Eeden, F., Schach, U., Trowe, T., Brand, M., Furutani Seiki, M., … Nüsslein Volhard, C. (1996). Genes controlling and mediating locomotion behavior of the zebrafish embryo and larva. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.399 chicago: Granato, Michael, Fredericus Van Eeden, Ursula Schach, Torsten Trowe, Michael Brand, Makoto Furutani Seiki, Pascal Haffter, et al. “Genes Controlling and Mediating Locomotion Behavior of the Zebrafish Embryo and Larva.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.399. ieee: M. Granato et al., “Genes controlling and mediating locomotion behavior of the zebrafish embryo and larva,” Development, vol. 123. Company of Biologists, pp. 399–413, 1996. ista: Granato M, Van Eeden F, Schach U, Trowe T, Brand M, Furutani Seiki M, Haffter P, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Kelsh R, Mullins M, Odenthal J, Nüsslein Volhard C. 1996. Genes controlling and mediating locomotion behavior of the zebrafish embryo and larva. Development. 123, 399–413. mla: Granato, Michael, et al. “Genes Controlling and Mediating Locomotion Behavior of the Zebrafish Embryo and Larva.” Development, vol. 123, Company of Biologists, 1996, pp. 399–413, doi:10.1242/dev.123.1.399. short: M. Granato, F. Van Eeden, U. Schach, T. Trowe, M. Brand, M. Furutani Seiki, P. Haffter, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, C. Nüsslein Volhard, Development 123 (1996) 399–413. date_created: 2018-12-11T12:07:38Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T14:20:50Z day: '01' doi: 10.1242/dev.123.1.399 extern: '1' external_id: pmid: - '9007258' intvolume: ' 123' language: - iso: eng month: '12' oa_version: None page: 399 - 413 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1904' quality_controlled: '1' scopus_import: '1' status: public title: Genes controlling and mediating locomotion behavior of the zebrafish embryo and larva type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4215' abstract: - lang: eng text: In a screen for early developmental mutants of the zebrafish, we have identified mutations specifically affecting the internal organs, We identified 53 mutations affecting the cardiovascular system, Nine of them affect specific landmarks of heart morphogenesis. Mutations in four genes cause a failure in the fusion of the bilateral heart primordia, resulting in cardia bifida. In lonely atrium, no heart venticle is visible and the atrium is directly fused to the outflow tract. In the overlooped mutant, the relative position of the two heart chambers is distorted, The heart is enormously enlarged in the santa mutant, In two mutants, scotch tape and superglue, the cardiac jelly between the two layers of the heart is significantly reduced, We also identified a number of mutations affecting the function of the heart, The mutations affecting heart function can be subdivided into two groups, one affecting heart contraction and another affecting the rhythm of the heart beat. Among the contractility group of mutants are 5 with no heart beat at all and 15 with a reduced heart beat of one or both chambers, 6 mutations are in the rhythmicity group and specifically affect the beating pattern of the heart, Mutations in two genes, bypass and kurzschluss, cause specific defects in the circulatory system, In addition to the heart mutants, we identified 23 mutations affecting the integrity of the liver, the intestine or the kidney, In this report, we demonstrate that it is feasible to screen for genes specific for the patterning or function of certain internal organs in the zebrafish, The mutations presented here could serve as an entrypoint to the establishment of a genetic hierarchy underlying organogenesis. acknowledgement: We thank Chris Simpson and Colleen Boggs for excellent technical help. We thank Mark C. Fishman for the advice and providing fish for complementation; Bernadette Fouquet, Kerri S. Warren and Brant M. Weinstein for critically reading the manuscript. JNC is supported in part by NIH grant RO1-HL49579 to Mark C. Fishman. article_processing_charge: No article_type: original author: - first_name: Jaunian full_name: Chen, Jaunian last_name: Chen - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Elisabeth full_name: Vogelsang, Elisabeth last_name: Vogelsang - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Chen J, Haffter P, Odenthal J, et al. Mutations affecting the cardiovascular system and other internal organs in zebrafish. Development. 1996;123:293-302. doi:10.1242/dev.123.1.293 apa: Chen, J., Haffter, P., Odenthal, J., Vogelsang, E., Brand, M., Van Eeden, F., … Nüsslein Volhard, C. (1996). Mutations affecting the cardiovascular system and other internal organs in zebrafish. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.293 chicago: Chen, Jaunian, Pascal Haffter, Jörg Odenthal, Elisabeth Vogelsang, Michael Brand, Fredericus Van Eeden, Makoto Furutani Seiki, et al. “Mutations Affecting the Cardiovascular System and Other Internal Organs in Zebrafish.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.293. ieee: J. Chen et al., “Mutations affecting the cardiovascular system and other internal organs in zebrafish,” Development, vol. 123. Company of Biologists, pp. 293–302, 1996. ista: Chen J, Haffter P, Odenthal J, Vogelsang E, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Kelsh R, Mullins M, Nüsslein Volhard C. 1996. Mutations affecting the cardiovascular system and other internal organs in zebrafish. Development. 123, 293–302. mla: Chen, Jaunian, et al. “Mutations Affecting the Cardiovascular System and Other Internal Organs in Zebrafish.” Development, vol. 123, Company of Biologists, 1996, pp. 293–302, doi:10.1242/dev.123.1.293. short: J. Chen, P. Haffter, J. Odenthal, E. Vogelsang, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, R. Kelsh, M. Mullins, C. Nüsslein Volhard, Development 123 (1996) 293–302. date_created: 2018-12-11T12:07:38Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T13:11:56Z day: '01' doi: 10.1242/dev.123.1.293 extern: '1' external_id: pmid: - '9007249' intvolume: ' 123' language: - iso: eng main_file_link: - open_access: '1' url: https://journals.biologists.com/dev/article/123/1/293/39344/Mutations-affecting-the-cardiovascular-system-and month: '12' oa: 1 oa_version: Published Version page: 293 - 302 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1902' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting the cardiovascular system and other internal organs in zebrafish type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4213' abstract: - lang: eng text: 'Forty zebrafish mutants with localized or general neural degeneration are described. The onset and duration of degeneration and the distribution of ectopically dying cells are specific characteristics of each mutant, Mutants are classified into four groups by these parameters. Class I: late focal neural degeneration mutants, These 18 mutants have restricted cell death mainly in the tectum and the dorsal hindbrain after 36 hours, The degeneration does not spread and disappears at later stages of development. Class LI: early focal neural degeneration mutants. Ten mutants in this class exhibit transient restricted degeneration affecting mainly the diencephalon, the hindbrain and the spinal cord at 20 hours, The midbrain is less affected. The degeneration shifts to the dorsal diencephalon and the tectum at 36 hours. Class III: late spreading neural degeneration mutants. The 8 mutants in this class display a degeneration that is first seen in the tectum and subsequently spreads throughout the nervous system from 36 hours on. Class IV: early general neural degeneration mutants, This class of four mutants already shows overall cell degeneration in the nervous system at the 15-somite stage. Three of the class I mutants show a change in the pattern of gene expression in the anlage of a brain structure prior to the onset of degeneration. These results suggest that focal cell death may be a useful clue for the detection of early patterning defects of the vertebrate nervous system in regions devoid of visible landmarks.' acknowledgement: We are grateful to Rachel Warga, Tatijana Piotrowski, Francisco Pelegri and Tomas Schilling for sharing unpublished results. We thank Heinz Schwarz for histological sections and Eric Weinberg, Monte Westerfield, Stephen Wilson and Hitoshi Okamoto for in situprobes. We also thank Nancy Hopkins, Francisco Pelegri and Stefan Schulte-Merker for helpful suggestions on the manuscript, and Raymond Lamos for technical support. article_processing_charge: No article_type: original author: - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Corinne full_name: Houart, Corinne last_name: Houart - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Furutani Seiki M, Jiang Y, Brand M, et al. Neural degeneration mutants in the zebrafish, Danio rerio. Development. 1996;123(1):229-239. doi:10.1242/dev.123.1.229 apa: Furutani Seiki, M., Jiang, Y., Brand, M., Heisenberg, C.-P. J., Houart, C., Beuchle, D., … Nüsslein Volhard, C. (1996). Neural degeneration mutants in the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.229 chicago: Furutani Seiki, Makoto, Yunjin Jiang, Michael Brand, Carl-Philipp J Heisenberg, Corinne Houart, Dirk Beuchle, Fredericus Van Eeden, et al. “Neural Degeneration Mutants in the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.229 . ieee: M. Furutani Seiki et al., “Neural degeneration mutants in the zebrafish, Danio rerio,” Development, vol. 123, no. 1. Company of Biologists, pp. 229–239, 1996. ista: Furutani Seiki M, Jiang Y, Brand M, Heisenberg C-PJ, Houart C, Beuchle D, Van Eeden F, Granato M, Haffter P, Hammerschmidt M, Kane D, Kelsh R, Mullins M, Odenthal J, Nüsslein Volhard C. 1996. Neural degeneration mutants in the zebrafish, Danio rerio. Development. 123(1), 229–239. mla: Furutani Seiki, Makoto, et al. “Neural Degeneration Mutants in the Zebrafish, Danio Rerio.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 229–39, doi:10.1242/dev.123.1.229 . short: M. Furutani Seiki, Y. Jiang, M. Brand, C.-P.J. Heisenberg, C. Houart, D. Beuchle, F. Van Eeden, M. Granato, P. Haffter, M. Hammerschmidt, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, C. Nüsslein Volhard, Development 123 (1996) 229–239. date_created: 2018-12-11T12:07:37Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T14:02:39Z day: '01' doi: '10.1242/dev.123.1.229 ' extern: '1' external_id: pmid: - '9007243 ' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 229 - 239 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1903' quality_controlled: '1' scopus_import: '1' status: public title: Neural degeneration mutants in the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4208' abstract: - lang: eng text: 'We have identified several genes that are required for various morphogenetic processes during gastrulation and tail formation, Two genes are required in the anterior region of the body axis: one eyed pinhead (oep) and dir ty nose (dns). oep mutant embryos are defective in prechordal plate formation and the specification of anterior and ventral structures of the central nervous system, In dns mutants, cells of the prechordal plate, such as the prospective hatching gland cells, fail to specify. Two genes are required for convergence and extension movements. In mutant trilobite embryos, extension movements on the dorsal side of the embryo are affected, whereas in the formerly described spadetail mutants, for which two new alleles have been isolated, convergent movements of ventrolateral cells to the dorsal side are blocked. Two genes are required for the development of the posterior end of the body axis, In pipetail mutants, the tailbud fails to move ventrally on the yolk sac after germ ring closure, and the tip of the tail fails to detach from the yolk tube. Mutants in kugelig (kgg) do not form the yolk tube at the posterior side of the yolk sac.' acknowledgement: M. H. and F. P. contributed equally to this work. We are very grateful to Dr Andrew McMahon, in whose laboratory much of the mutant analysis has been carried out. Additionally, we would like to thank Ed Sullivan for his help and advice during the setting-up of a fish facility in the McMahon laboratory. Dr Eric Weinberg generously supplied us with the myoD cDNA prior to publication. Published reagents were obtained from Drs Marie-Andrée Akimenko, Jean Stéphane Joly, Stefan Krauss and Stefan Schulte-Merker. article_processing_charge: No article_type: original author: - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Francisco full_name: Pelegri, Francisco last_name: Pelegri - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Hammerschmidt M, Pelegri F, Mullins M, et al. Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio. Development. 1996;123(1):143-151. doi:10.1242/dev.123.1.143 apa: Hammerschmidt, M., Pelegri, F., Mullins, M., Kane, D., Brand, M., Van Eeden, F., … Nüsslein Volhard, C. (1996). Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.143 chicago: Hammerschmidt, Matthias, Francisco Pelegri, Mary Mullins, Donald Kane, Michael Brand, Fredericus Van Eeden, Makoto Furutani Seiki, et al. “Mutations Affecting Morphogenesis during Gastrulation and Tail Formation in the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.143. ieee: M. Hammerschmidt et al., “Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio,” Development, vol. 123, no. 1. Company of Biologists, pp. 143–151, 1996. ista: Hammerschmidt M, Pelegri F, Mullins M, Kane D, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Haffter P, Heisenberg C-PJ, Jiang Y, Kelsh R, Odenthal J, Warga R, Nüsslein Volhard C. 1996. Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio. Development. 123(1), 143–151. mla: Hammerschmidt, Matthias, et al. “Mutations Affecting Morphogenesis during Gastrulation and Tail Formation in the Zebrafish, Danio Rerio.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 143–51, doi:10.1242/dev.123.1.143. short: M. Hammerschmidt, F. Pelegri, M. Mullins, D. Kane, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, P. Haffter, C.-P.J. Heisenberg, Y. Jiang, R. Kelsh, J. Odenthal, R. Warga, C. Nüsslein Volhard, Development 123 (1996) 143–151. date_created: 2018-12-11T12:07:35Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-05T06:59:42Z day: '01' doi: 10.1242/dev.123.1.143 extern: '1' external_id: pmid: - '9007236' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 143 - 151 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1908' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4210' abstract: - lang: eng text: Mutations causing a visible phenotype in the adult serve as valuable visible genetic markers in multicellular genetic model organisms such as Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana. In a large scale screen for mutations affecting early development of the zebrafish, we identified a number of mutations that are homozygous viable or semiviable. Here we describe viable mutations which produce visible phenotypes in the adult fish. These predominantly affect the fins and pigmentation, but also the eyes and body length of the adult. A number of dominant mutations caused visible phenotypes in the adult fish, Mutations in three genes, long fin, another long fin and wanda affected fin formation in the adult. Four mutations were found to cause a dominant reduction of the overall body length in the adult. The adult pigment pattern was found to be changed by dominant mutations in wanda, asterix, obelix, leopard, salz and pfeffer. Among the recessive mutations producing visible phenotypes in the homozygous adult, a group of mutations that failed to produce melanin was assayed for tyrosinase activity. Mutations in sandy produced embryos that failed to express tyrosinase activity. These are potentially useful for using tyrosinase as a marker for the generation of transgenic lines of zebrafish. article_processing_charge: No article_type: original author: - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Shuo full_name: Lin, Shuo last_name: Lin - first_name: Michael full_name: Farrell, Michael last_name: Farrell - first_name: Elisabeth full_name: Vogelsang, Elisabeth last_name: Vogelsang - first_name: Fabian full_name: Haas, Fabian last_name: Haas - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Nancy full_name: Hopkins, Nancy last_name: Hopkins - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Haffter P, Odenthal J, Mullins M, et al. Mutations affecting pigmentation and shape of the adult zebrafish. Development Genes and Evolution. 1996;206(4):260-276. doi:10.1007/s004270050051 apa: Haffter, P., Odenthal, J., Mullins, M., Lin, S., Farrell, M., Vogelsang, E., … Nüsslein Volhard, C. (1996). Mutations affecting pigmentation and shape of the adult zebrafish. Development Genes and Evolution. Springer. https://doi.org/10.1007/s004270050051 chicago: Haffter, Pascal, Jörg Odenthal, Mary Mullins, Shuo Lin, Michael Farrell, Elisabeth Vogelsang, Fabian Haas, et al. “Mutations Affecting Pigmentation and Shape of the Adult Zebrafish.” Development Genes and Evolution. Springer, 1996. https://doi.org/10.1007/s004270050051. ieee: P. Haffter et al., “Mutations affecting pigmentation and shape of the adult zebrafish,” Development Genes and Evolution, vol. 206, no. 4. Springer, pp. 260–276, 1996. ista: Haffter P, Odenthal J, Mullins M, Lin S, Farrell M, Vogelsang E, Haas F, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Kelsh R, Hopkins N, Nüsslein Volhard C. 1996. Mutations affecting pigmentation and shape of the adult zebrafish. Development Genes and Evolution. 206(4), 260–276. mla: Haffter, Pascal, et al. “Mutations Affecting Pigmentation and Shape of the Adult Zebrafish.” Development Genes and Evolution, vol. 206, no. 4, Springer, 1996, pp. 260–76, doi:10.1007/s004270050051. short: P. Haffter, J. Odenthal, M. Mullins, S. Lin, M. Farrell, E. Vogelsang, F. Haas, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, R. Kelsh, N. Hopkins, C. Nüsslein Volhard, Development Genes and Evolution 206 (1996) 260–276. date_created: 2018-12-11T12:07:36Z date_published: 1996-11-27T00:00:00Z date_updated: 2022-08-04T14:45:21Z day: '27' doi: 10.1007/s004270050051 extern: '1' external_id: pmid: - '24173565' intvolume: ' 206' issue: '4' language: - iso: eng month: '11' oa_version: None page: 260 - 276 pmid: 1 publication: Development Genes and Evolution publication_identifier: issn: - 0043-5546 publication_status: published publisher: Springer publist_id: '1906' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting pigmentation and shape of the adult zebrafish type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 206 year: '1996' ... --- _id: '4211' abstract: - lang: eng text: We describe two genes, dino and mercedes, which are required for the organization of the zebrafish body plan, In dine mutant embryos, the tail is enlarged at the expense of the head and the anterior region of the trunk, The altered expression patterns of various marker genes reveal that, with the exception of the dorsal most marginal zone, all regions of the early dine mutant embryo acquire more ventral fates, These alterations are already apparent before the onset of gastrulation, mercedes mutant embryos show a similar but weaker phenotype, suggesting a role in the same patterning processes. The phenotypes suggests that dine and mercedes are required for the establishment of dorsal fates in both the marginal and the animal zone of the early gastrula embryo, Their function in the patterning of the ventrolateral mesoderm and the induction of the neuroectoderm is similar to the function of the Spemann organizer in the amphibian embryo. acknowledgement: "We are very grateful to Dr Andrew McMahon in whose laboratory much of the mutant analysis has been carried out. Additionally, we would like to thank Ed Sullivan for his help and advice during the setting up of a fish facility in the McMahon laboratory. Drs Eric Weinberg and Leonard Zon generously supplied us with reagents prior to publication. Published reagents were obtained from Drs Jon Graff, Jean-Stéphane Joly, Stefan Krauss and Stefan Schulte-Merker.\r\nDrs Mary Dickinson, Andrew McMahon, Siegfried Roth and Stefan Schulte-Merker read earlier versions of the Manuscript. " article_processing_charge: No article_type: original author: - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Francisco full_name: Pelegri, Francisco last_name: Pelegri - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Hammerschmidt M, Pelegri F, Mullins M, et al. Dino and Mercedes, two genes regulating dorsal development in the zebrafish embryo. Development. 1996;123(1):95-102. doi:10.1242/dev.123.1.95 apa: Hammerschmidt, M., Pelegri, F., Mullins, M., Kane, D., Van Eeden, F., Granato, M., … Nüsslein Volhard, C. (1996). Dino and Mercedes, two genes regulating dorsal development in the zebrafish embryo. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.95 chicago: Hammerschmidt, Matthias, Francisco Pelegri, Mary Mullins, Donald Kane, Fredericus Van Eeden, Michael Granato, Michael Brand, et al. “Dino and Mercedes, Two Genes Regulating Dorsal Development in the Zebrafish Embryo.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.95. ieee: M. Hammerschmidt et al., “Dino and Mercedes, two genes regulating dorsal development in the zebrafish embryo,” Development, vol. 123, no. 1. Company of Biologists, pp. 95–102, 1996. ista: Hammerschmidt M, Pelegri F, Mullins M, Kane D, Van Eeden F, Granato M, Brand M, Furutani Seiki M, Haffter P, Heisenberg C-PJ, Jiang Y, Kelsh R, Odenthal J, Warga R, Nüsslein Volhard C. 1996. Dino and Mercedes, two genes regulating dorsal development in the zebrafish embryo. Development. 123(1), 95–102. mla: Hammerschmidt, Matthias, et al. “Dino and Mercedes, Two Genes Regulating Dorsal Development in the Zebrafish Embryo.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 95–102, doi:10.1242/dev.123.1.95. short: M. Hammerschmidt, F. Pelegri, M. Mullins, D. Kane, F. Van Eeden, M. Granato, M. Brand, M. Furutani Seiki, P. Haffter, C.-P.J. Heisenberg, Y. Jiang, R. Kelsh, J. Odenthal, R. Warga, C. Nüsslein Volhard, Development 123 (1996) 95–102. date_created: 2018-12-11T12:07:36Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T15:10:34Z day: '01' doi: 10.1242/dev.123.1.95 extern: '1' external_id: pmid: - '9007232' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 95 - 102 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1907' quality_controlled: '1' scopus_import: '1' status: public title: Dino and Mercedes, two genes regulating dorsal development in the zebrafish embryo type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4292' abstract: - lang: eng text: Ageing, or senescence, is a decline in state at later ages that is manifested through a reduction in survival and fecundity. Ageing means that reproductive prospects and hence the life history options (trade-offs) open to the organism decline. Evolutionary theories of ageing suggest that it evolves in response to the level of externally imposed mortality and insults to fertility, either as part of life history optimization or as a result of mutation pressure. Several recent empirical and theoretical studies have produced apparently anomalous results. Some have suggested that the rate of ageing can decline at later ages, others that demographic evidence for ageing can appear in parallel with an improvement in state. All of these studies used measures of ageing that would not be expected to give an accurate reflection of changes in the state of the organism with age. We propose that Fisher's `reproductive value' is a natural measure of state at each age, which includes prospects for both survival and reproduction. If this measure is used, the apparently anomalous findings are not at variance with evolutionary theories of ageing. article_processing_charge: No author: - first_name: Linda full_name: Partridge, Linda last_name: Partridge - first_name: Nicholas H full_name: Barton, Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 citation: ama: Partridge L, Barton NH. On measuring the rate of ageing. Proceedings of the Royal Society of London Series B Biological Sciences. 1996;263(1375):1365-1371. doi:10.1098/rspb.1996.0200 apa: Partridge, L., & Barton, N. H. (1996). On measuring the rate of ageing. Proceedings of the Royal Society of London Series B Biological Sciences. Royal Society of London. https://doi.org/10.1098/rspb.1996.0200 chicago: Partridge, Linda, and Nicholas H Barton. “On Measuring the Rate of Ageing.” Proceedings of the Royal Society of London Series B Biological Sciences. Royal Society of London, 1996. https://doi.org/10.1098/rspb.1996.0200. ieee: L. Partridge and N. H. Barton, “On measuring the rate of ageing,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 263, no. 1375. Royal Society of London, pp. 1365–1371, 1996. ista: Partridge L, Barton NH. 1996. On measuring the rate of ageing. Proceedings of the Royal Society of London Series B Biological Sciences. 263(1375), 1365–1371. mla: Partridge, Linda, and Nicholas H. Barton. “On Measuring the Rate of Ageing.” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 263, no. 1375, Royal Society of London, 1996, pp. 1365–71, doi:10.1098/rspb.1996.0200. short: L. Partridge, N.H. Barton, Proceedings of the Royal Society of London Series B Biological Sciences 263 (1996) 1365–1371. date_created: 2018-12-11T12:08:05Z date_published: 1996-10-22T00:00:00Z date_updated: 2022-07-04T12:59:56Z day: '22' doi: 10.1098/rspb.1996.0200 extern: '1' intvolume: ' 263' issue: '1375' language: - iso: eng main_file_link: - url: https://royalsocietypublishing.org/doi/abs/10.1098/rspb.1996.0200 month: '10' oa_version: None page: 1365 - 1371 publication: Proceedings of the Royal Society of London Series B Biological Sciences publication_identifier: issn: - 0950-1193 publication_status: published publisher: Royal Society of London publist_id: '1786' quality_controlled: '1' status: public title: On measuring the rate of ageing type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 263 year: '1996' ... --- _id: '3462' article_processing_charge: No article_type: original author: - first_name: Thorsten full_name: Melcher, Thorsten last_name: Melcher - first_name: Jörg full_name: Geiger, Jörg last_name: Geiger - first_name: Peter M full_name: Jonas, Peter M id: 353C1B58-F248-11E8-B48F-1D18A9856A87 last_name: Jonas orcid: 0000-0001-5001-4804 - first_name: Hannah full_name: Monyer, Hannah last_name: Monyer citation: ama: Melcher T, Geiger J, Jonas PM, Monyer H. Analysis of molecular determinants in native AMPA receptors. Neurochemistry International. 1996;28(2):141-144. doi:10.1016/0197-0186(95)00077-1 apa: Melcher, T., Geiger, J., Jonas, P. M., & Monyer, H. (1996). Analysis of molecular determinants in native AMPA receptors. Neurochemistry International. Elsevier. https://doi.org/10.1016/0197-0186(95)00077-1 chicago: Melcher, Thorsten, Jörg Geiger, Peter M Jonas, and Hannah Monyer. “Analysis of Molecular Determinants in Native AMPA Receptors.” Neurochemistry International. Elsevier, 1996. https://doi.org/10.1016/0197-0186(95)00077-1. ieee: T. Melcher, J. Geiger, P. M. Jonas, and H. Monyer, “Analysis of molecular determinants in native AMPA receptors,” Neurochemistry International, vol. 28, no. 2. Elsevier, pp. 141–144, 1996. ista: Melcher T, Geiger J, Jonas PM, Monyer H. 1996. Analysis of molecular determinants in native AMPA receptors. Neurochemistry International. 28(2), 141–144. mla: Melcher, Thorsten, et al. “Analysis of Molecular Determinants in Native AMPA Receptors.” Neurochemistry International, vol. 28, no. 2, Elsevier, 1996, pp. 141–44, doi:10.1016/0197-0186(95)00077-1. short: T. Melcher, J. Geiger, P.M. Jonas, H. Monyer, Neurochemistry International 28 (1996) 141–144. date_created: 2018-12-11T12:03:27Z date_published: 1996-02-01T00:00:00Z date_updated: 2022-08-11T09:42:29Z day: '01' doi: 10.1016/0197-0186(95)00077-1 extern: '1' external_id: pmid: - '8719701 ' intvolume: ' 28' issue: '2' language: - iso: eng month: '02' oa_version: None page: 141 - 144 pmid: 1 publication: Neurochemistry International publication_identifier: issn: - 0197-0186 publication_status: published publisher: Elsevier publist_id: '2925' quality_controlled: '1' scopus_import: '1' status: public title: Analysis of molecular determinants in native AMPA receptors type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 28 year: '1996' ... --- _id: '3756' abstract: - lang: eng text: 'In many eukaryotic cells going through M-phase, a bipolar spindle is formed by microtubules nucleated from centrosomes. These microtubules, in addition to being `''captured” by kinetochores, may be stabilized by chromatin in two different ways: short-range stabilization effects may affect microtubules in close contact with the chromatin, while long-range stabilization effects may `''guide” microtubule growth towards the chromatin (e.g., by introducing a diffusive gradient of an enzymatic activity that affects microtubule assembly). Here, we use both meiotic and mitotic extracts from Xenopus laevis eggs to study microtubule aster formation and microtubule dynamics in the presence of chromatin. In `''low-speed” meiotic extracts, in the presence of salmon sperm chromatin, we find that short-range stabilization effects lead to a strong anisotropy of the microtubule asters. Analysis of the dynamic parameters of microtubule growth shows that this anisotropy arises from a decrease in the catastrophe frequency, an increase in the rescue frequency and a decrease in the growth velocity. In this system we also find evidence for long-range `''guidance” effects, which lead to a weak anisotropy of the asters. Statistically relevant results on these long-range effects are obtained in `''high-speed” mitotic extracts in the presence of artificially constructed chromatin stripes. We find that aster anisotropy is biased in the direction of the chromatin and that the catastrophe frequency is reduced in its vicinity. In this system we also find a surprising dependence of the catastrophe and the rescue frequencies on the length of microtubules nucleated from centrosomes: the catastrophe frequency increases and the rescue frequency decreases with microtubule length.' acknowledgement: "We would like to thank T. Holy and T. Mitchison for providing us with centrosomes; M. Glotzer and T. Mitchison for giving us the plasmid for A90 cyclin B; J. Stock and members of his laboratory for help with biochemical preparations; R. Zimmerman for help with the biotinylation of DNA; J. Shepard for help with the patterning of surfaces; D. Tsui for use\r\nof his clean room facility, and D. Fygenson, T. Holy, E. Karsenti, E. Kennedy, A. Levine, T. Mitchison, and G. Waters for valuable discussions, constant encouragement and technical help. This work was partially supported by the National Institutes of Health (Grant No. GM-50712) and the Human Frontier Science Program." article_processing_charge: No article_type: original author: - first_name: Marileen full_name: Dogterom, Marileen last_name: Dogterom - first_name: M. full_name: Felix, M. last_name: Felix - first_name: Calin C full_name: Guet, Calin C id: 47F8433E-F248-11E8-B48F-1D18A9856A87 last_name: Guet orcid: 0000-0001-6220-2052 - first_name: Stanislas full_name: Leibler, Stanislas last_name: Leibler citation: ama: 'Dogterom M, Felix M, Guet CC, Leibler S. Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. 1996;133(1):125-140. doi:doi: 10.1083/jcb.133.1.125 ' apa: 'Dogterom, M., Felix, M., Guet, C. C., & Leibler, S. (1996). Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. Rockefeller University Press. https://doi.org/doi: 10.1083/jcb.133.1.125 ' chicago: 'Dogterom, Marileen, M. Felix, Calin C Guet, and Stanislas Leibler. “Influence of M-Phase Chromatin on the Anisotropy of Microtubule Asters.” Journal of Cell Biology. Rockefeller University Press, 1996. https://doi.org/doi: 10.1083/jcb.133.1.125 .' ieee: M. Dogterom, M. Felix, C. C. Guet, and S. Leibler, “Influence of M-phase chromatin on the anisotropy of microtubule asters,” Journal of Cell Biology, vol. 133, no. 1. Rockefeller University Press, pp. 125–140, 1996. ista: Dogterom M, Felix M, Guet CC, Leibler S. 1996. Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. 133(1), 125–140. mla: 'Dogterom, Marileen, et al. “Influence of M-Phase Chromatin on the Anisotropy of Microtubule Asters.” Journal of Cell Biology, vol. 133, no. 1, Rockefeller University Press, 1996, pp. 125–40, doi:doi: 10.1083/jcb.133.1.125 .' short: M. Dogterom, M. Felix, C.C. Guet, S. Leibler, Journal of Cell Biology 133 (1996) 125–140. date_created: 2018-12-11T12:05:00Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-08-09T14:20:13Z day: '01' doi: 'doi: 10.1083/jcb.133.1.125 ' extern: '1' external_id: pmid: - '8601601' intvolume: ' 133' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2120784/ month: '01' oa: 1 oa_version: Published Version page: 125 - 140 pmid: 1 publication: Journal of Cell Biology publication_identifier: issn: - 0021-9525 publication_status: published publisher: Rockefeller University Press publist_id: '2473' quality_controlled: '1' scopus_import: '1' status: public title: Influence of M-phase chromatin on the anisotropy of microtubule asters type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 133 year: '1996' ... --- _id: '4027' abstract: - lang: eng text: 'Questions about lines in space arise frequently as subproblems in three-dimensional computational geometry. In this paper we study a number of fundamental combinatorial and algorithmic problems involving arrangements of n lines in three-dimensional space. Our main results include: 1. A tight Θ(n2) bound on the maximum combinatorial description complexity of the set of all oriented lines that have specified orientations relative to the n given lines. 2. A similar bound of Θ(n3) for the complexity of the set of all lines passing above the n given lines. 3. A preprocessing procedure using O(n2+ε) time and storage, for any ε > 0, that builds a structure supporting O(logn)-time queries for testing if a line lies above all the given lines. 4. An algorithm that tests the "towering property" in O(n4/3+ε) time, for any ε > 0: do n given red lines lie all above n given blue lines? The tools used to obtain these and other results include Plücker coordinates for lines in space and ε-nets for various geometric range spaces.' acknowledgement: Work on this paper by Bernard Chazelle has been supported by NSF Grant CCR-87-00917. Work on this paper by Herbert Edelsbrunner has been supported by NSF Grant CCR-87-14565. Work on this paper by Leonidas Guibas has been supported by grants from the Mitsubishi and Toshiba Corporations. Work on this paper by Micha Sharir has been supported by ONR Grant N00014-87-K-0129, by NSF Grants DCR-83-20085 and CCR-89-01484, and by grants from the U.S.-Israeli Binational Science Foundation, the NCRD — the Israeli National Council for Research and Development, and the EMET Fund of the Israeli Academy of Sciences. article_processing_charge: No article_type: original author: - first_name: Bernard full_name: Chazelle, Bernard last_name: Chazelle - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Leonidas full_name: Guibas, Leonidas last_name: Guibas - first_name: Micha full_name: Sharir, Micha last_name: Sharir - first_name: Jorge full_name: Stolfi, Jorge last_name: Stolfi citation: ama: 'Chazelle B, Edelsbrunner H, Guibas L, Sharir M, Stolfi J. Lines in space: Combinatorics and algorithms. Algorithmica. 1996;15(5):428-447. doi:10.1007/BF01955043' apa: 'Chazelle, B., Edelsbrunner, H., Guibas, L., Sharir, M., & Stolfi, J. (1996). Lines in space: Combinatorics and algorithms. Algorithmica. Springer. https://doi.org/10.1007/BF01955043' chicago: 'Chazelle, Bernard, Herbert Edelsbrunner, Leonidas Guibas, Micha Sharir, and Jorge Stolfi. “Lines in Space: Combinatorics and Algorithms.” Algorithmica. Springer, 1996. https://doi.org/10.1007/BF01955043.' ieee: 'B. Chazelle, H. Edelsbrunner, L. Guibas, M. Sharir, and J. Stolfi, “Lines in space: Combinatorics and algorithms,” Algorithmica, vol. 15, no. 5. Springer, pp. 428–447, 1996.' ista: 'Chazelle B, Edelsbrunner H, Guibas L, Sharir M, Stolfi J. 1996. Lines in space: Combinatorics and algorithms. Algorithmica. 15(5), 428–447.' mla: 'Chazelle, Bernard, et al. “Lines in Space: Combinatorics and Algorithms.” Algorithmica, vol. 15, no. 5, Springer, 1996, pp. 428–47, doi:10.1007/BF01955043.' short: B. Chazelle, H. Edelsbrunner, L. Guibas, M. Sharir, J. Stolfi, Algorithmica 15 (1996) 428–447. date_created: 2018-12-11T12:06:31Z date_published: 1996-05-01T00:00:00Z date_updated: 2022-08-09T09:55:46Z day: '01' doi: 10.1007/BF01955043 extern: '1' intvolume: ' 15' issue: '5' language: - iso: eng month: '05' oa_version: None page: 428 - 447 publication: Algorithmica publication_identifier: issn: - 0178-4617 publication_status: published publisher: Springer publist_id: '2100' quality_controlled: '1' scopus_import: '1' status: public title: 'Lines in space: Combinatorics and algorithms' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 15 year: '1996' ... --- _id: '4026' abstract: - lang: eng text: A set of n weighted points in general position in R(d) defines a unique regular triangulation. This paper proves that if the points are added one by one, then flipping in a topological order will succeed in constructing this triangulation. If, in addition, the points are added in a random sequence and the history of the flips is used for locating the next point, then the algorithm takes expected time at most O(n log n + n(inverted left perpendicular d/2 inverted right perpendicular)). Under the assumption that the points and weights are independently and identically distributed, the expected running time is between proportional to and a factor log n more than the expected size of the regular triangulation. The expectation is over choosing the points and over independent coin-flips performed by the algorithm. acknowledgement: National Science Foundation under Grant CCR-8921421, Alan T. Waterman award, Grant CCR-9118874. article_processing_charge: No article_type: original author: - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Nimish full_name: Shah, Nimish last_name: Shah citation: ama: Edelsbrunner H, Shah N. Incremental topological flipping works for regular triangulations. Algorithmica. 1996;15(3):223-241. doi:10.1007/BF01975867 apa: Edelsbrunner, H., & Shah, N. (1996). Incremental topological flipping works for regular triangulations. Algorithmica. Springer. https://doi.org/10.1007/BF01975867 chicago: Edelsbrunner, Herbert, and Nimish Shah. “Incremental Topological Flipping Works for Regular Triangulations.” Algorithmica. Springer, 1996. https://doi.org/10.1007/BF01975867. ieee: H. Edelsbrunner and N. Shah, “Incremental topological flipping works for regular triangulations,” Algorithmica, vol. 15, no. 3. Springer, pp. 223–241, 1996. ista: Edelsbrunner H, Shah N. 1996. Incremental topological flipping works for regular triangulations. Algorithmica. 15(3), 223–241. mla: Edelsbrunner, Herbert, and Nimish Shah. “Incremental Topological Flipping Works for Regular Triangulations.” Algorithmica, vol. 15, no. 3, Springer, 1996, pp. 223–41, doi:10.1007/BF01975867. short: H. Edelsbrunner, N. Shah, Algorithmica 15 (1996) 223–241. date_created: 2018-12-11T12:06:31Z date_published: 1996-03-01T00:00:00Z date_updated: 2022-08-09T09:46:07Z day: '01' doi: 10.1007/BF01975867 extern: '1' intvolume: ' 15' issue: '3' language: - iso: eng month: '03' oa_version: None page: 223 - 241 publication: Algorithmica publication_identifier: issn: - 0178-4617 publication_status: published publisher: Springer publist_id: '2099' quality_controlled: '1' scopus_import: '1' status: public title: Incremental topological flipping works for regular triangulations type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 15 year: '1996' ... --- _id: '4030' acknowledgement: article M-Pos412 article_processing_charge: No author: - first_name: Jie full_name: Liang, Jie last_name: Liang - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Shankar full_name: Subramaniam, Shankar last_name: Subramaniam citation: ama: Liang J, Edelsbrunner H, Subramaniam S. Effects of Molecular Shape Representations on Boundary Element Method for Protein Electrostatics Computations. Vol 70. Cell Press; 1996:A224-A224. doi:10.1016/S0006-3495(96)79664-9 apa: Liang, J., Edelsbrunner, H., & Subramaniam, S. (1996). Effects of molecular shape representations on boundary element method for protein electrostatics computations. Fortieth Annual Meeting (Vol. 70, pp. A224–A224). Cell Press. https://doi.org/10.1016/S0006-3495(96)79664-9 chicago: Liang, Jie, Herbert Edelsbrunner, and Shankar Subramaniam. Effects of Molecular Shape Representations on Boundary Element Method for Protein Electrostatics Computations. Fortieth Annual Meeting. Vol. 70. Cell Press, 1996. https://doi.org/10.1016/S0006-3495(96)79664-9. ieee: J. Liang, H. Edelsbrunner, and S. Subramaniam, Effects of molecular shape representations on boundary element method for protein electrostatics computations, vol. 70, no. 2, Part 2. Cell Press, 1996, pp. A224–A224. ista: Liang J, Edelsbrunner H, Subramaniam S. 1996. Effects of molecular shape representations on boundary element method for protein electrostatics computations, Cell Press,p. mla: Liang, Jie, et al. “Effects of Molecular Shape Representations on Boundary Element Method for Protein Electrostatics Computations.” Fortieth Annual Meeting, vol. 70, no. 2, Part 2, Cell Press, 1996, pp. A224–A224, doi:10.1016/S0006-3495(96)79664-9. short: J. Liang, H. Edelsbrunner, S. Subramaniam, Effects of Molecular Shape Representations on Boundary Element Method for Protein Electrostatics Computations, Cell Press, 1996. date_created: 2018-12-11T12:06:32Z date_published: 1996-02-19T00:00:00Z date_updated: 2022-08-08T10:22:38Z day: '19' doi: 10.1016/S0006-3495(96)79664-9 extern: '1' intvolume: ' 70' issue: 2, Part 2 language: - iso: eng main_file_link: - open_access: '1' url: https://www.sciencedirect.com/science/article/pii/S0006349596796649?via%3Dihub month: '02' oa: 1 oa_version: None page: A224 - A224 publication: Fortieth Annual Meeting publication_status: published publisher: Cell Press publist_id: '2097' status: public title: Effects of molecular shape representations on boundary element method for protein electrostatics computations type: conference_poster user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 70 year: '1996' ... --- _id: '4031' acknowledgement: article W-AM-L6 article_processing_charge: No author: - first_name: Jie full_name: Liang, Jie last_name: Liang - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Sudhakar full_name: Pamidghantam, Sudhakar last_name: Pamidghantam - first_name: Shankar full_name: Subramaniam, Shankar last_name: Subramaniam citation: ama: 'Liang J, Edelsbrunner H, Pamidghantam S, Subramaniam S. Analytical Method for Molecular Shapes: Area, Volume, Cavities, Interface and Pockets. Vol 70. Cell Press; 1996:A377-A377. doi:10.1016/S0006-3495(96)79670-4' apa: 'Liang, J., Edelsbrunner, H., Pamidghantam, S., & Subramaniam, S. (1996). Analytical method for molecular shapes: Area, volume, cavities, interface and pockets. Fortieth Annual Meeting (Vol. 70, pp. A377–A377). Cell Press. https://doi.org/10.1016/S0006-3495(96)79670-4' chicago: 'Liang, Jie, Herbert Edelsbrunner, Sudhakar Pamidghantam, and Shankar Subramaniam. Analytical Method for Molecular Shapes: Area, Volume, Cavities, Interface and Pockets. Fortieth Annual Meeting. Vol. 70. Cell Press, 1996. https://doi.org/10.1016/S0006-3495(96)79670-4.' ieee: 'J. Liang, H. Edelsbrunner, S. Pamidghantam, and S. Subramaniam, Analytical method for molecular shapes: Area, volume, cavities, interface and pockets, vol. 70, no. 2, Part 2. Cell Press, 1996, pp. A377–A377.' ista: 'Liang J, Edelsbrunner H, Pamidghantam S, Subramaniam S. 1996. Analytical method for molecular shapes: Area, volume, cavities, interface and pockets, Cell Press,p.' mla: 'Liang, Jie, et al. “Analytical Method for Molecular Shapes: Area, Volume, Cavities, Interface and Pockets.” Fortieth Annual Meeting, vol. 70, no. 2, Part 2, Cell Press, 1996, pp. A377–A377, doi:10.1016/S0006-3495(96)79670-4.' short: 'J. Liang, H. Edelsbrunner, S. Pamidghantam, S. Subramaniam, Analytical Method for Molecular Shapes: Area, Volume, Cavities, Interface and Pockets, Cell Press, 1996.' date_created: 2018-12-11T12:06:32Z date_published: 1996-02-21T00:00:00Z date_updated: 2022-08-08T10:21:56Z day: '21' doi: 10.1016/S0006-3495(96)79670-4 extern: '1' intvolume: ' 70' issue: 2, Part 2 language: - iso: eng main_file_link: - open_access: '1' url: https://www.sciencedirect.com/science/article/pii/S0006349596796704?via%3Dihub month: '02' oa: 1 oa_version: None page: A377 - A377 publication: Fortieth Annual Meeting publication_status: published publisher: Cell Press publist_id: '2098' status: public title: 'Analytical method for molecular shapes: Area, volume, cavities, interface and pockets' type: conference_poster user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 70 year: '1996' ... --- _id: '4142' abstract: - lang: eng text: 'Mutations giving rise to anatomical defects in the inner ear have been isolated in a large scale screen for mutations causing visible abnormalities in the zebrafish embryo (Haffter, P., Granato, M., Brand, M. et al. (1996) Development 123, 1-36). 58 mutants have been classified as having a primary ear phenotype; these fall into several phenotypic classes, affecting presence or size of the otoliths, size and shape of the otic vesicle and formation of the semicircular canals, and define at least 20 complementation groups. Mutations in seven genes cause loss of one or both otoliths, but do not appear to affect development of other structures within the ear. Mutations in seven genes affect morphology and patterning of the inner ear epithelium, including formation of the semicircular canals and, in some, development of sensory patches (maculae and cristae). Within this class, dog-eared mutants show abnormal development of semicircular canals and lack cristae within the ear, while in van gogh, semicircular canals fail to form altogether, resulting in a tiny otic vesicle containing a single sensory patch. Both these mutants show defects in the expression of homeobox genes within the otic vesicle. In a further class of mutants, ear size is affected while patterning appears to be relatively normal; mutations in three genes cause expansion of the otic vesicle, while in little ears and microtic, the ear is abnormally small, but still contains all five sensory patches, as in the wild type. Many of the ear and otolith mutants show an expected behavioural phenotype: embryos fail to balance correctly, and may swim on their sides, upside down, or in circles. Several mutants with similar balance defects have also been isolated that have no obvious structural ear defect, but that may include mutants with vestibular dysfunction of the inner ear (Granato, M., van Eeden, F. J. M., Schach, U. et al. (1996) Development, 123, 399-413,). Mutations in 19 genes causing primary defects in other structures also show an ear defect. In particular, ear phenotypes are often found in conjunction with defects of neural crest derivatives (pigment cells and/or cartilaginous elements of the jaw). At least one mutant, dog-eared, shows defects in both the ear and another placodally derived sensory system, the lateral line, while hypersensitive mutants have additional trunk lateral line organs.' acknowledgement: T. T. W. thanks all members of the Tübingen fish and fly groups for their hospitality and generosity during her visits to the laboratory. We thank Julian Lewis, in whose laboratory much of this work was carried out, for many helpful discussions and suggestions, Catherine Haddon for advice on wild-type ear development and techniques, and Stephen Massey for fish husbandry in Oxford. We are grateful to Julian Lewis, Catherine Haddon, Nick Monk and Patrick Blader for comments on the manuscript, and to Trevor Jowett, Tom Schilling,Eric Weinberg and Monte Westerfield for providing cDNAs. We also thank Jarema Malicki and Wolfgang Driever for making some of the Boston otolith mutants available before publication. T. T. W. thanks the EMBO (ASTF 7668; ASTF 7918), the Imperial Cancer Research Fund and the Wellcome Trust (03643/Z/92) for support. article_processing_charge: No article_type: original author: - first_name: Tanya full_name: Whitfield, Tanya last_name: Whitfield - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Ursula full_name: Schach, Ursula last_name: Schach - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Whitfield T, Granato M, Van Eeden F, et al. Mutations affecting development of the zebrafish inner ear and lateral line. Development. 1996;123:241-254. doi:10.1242/dev.123.1.241 apa: Whitfield, T., Granato, M., Van Eeden, F., Schach, U., Brand, M., Furutani Seiki, M., … Nüsslein Volhard, C. (1996). Mutations affecting development of the zebrafish inner ear and lateral line. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.241 chicago: Whitfield, Tanya, Michael Granato, Fredericus Van Eeden, Ursula Schach, Michael Brand, Makoto Furutani Seiki, Pascal Haffter, et al. “Mutations Affecting Development of the Zebrafish Inner Ear and Lateral Line.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.241. ieee: T. Whitfield et al., “Mutations affecting development of the zebrafish inner ear and lateral line,” Development, vol. 123. Company of Biologists, pp. 241–254, 1996. ista: Whitfield T, Granato M, Van Eeden F, Schach U, Brand M, Furutani Seiki M, Haffter P, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Kelsh R, Mullins M, Odenthal J, Nüsslein Volhard C. 1996. Mutations affecting development of the zebrafish inner ear and lateral line. Development. 123, 241–254. mla: Whitfield, Tanya, et al. “Mutations Affecting Development of the Zebrafish Inner Ear and Lateral Line.” Development, vol. 123, Company of Biologists, 1996, pp. 241–54, doi:10.1242/dev.123.1.241. short: T. Whitfield, M. Granato, F. Van Eeden, U. Schach, M. Brand, M. Furutani Seiki, P. Haffter, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, C. Nüsslein Volhard, Development 123 (1996) 241–254. date_created: 2018-12-11T12:07:11Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-08T08:45:59Z day: '01' doi: 10.1242/dev.123.1.241 extern: '1' external_id: pmid: - '9007244' intvolume: ' 123' language: - iso: eng month: '12' oa_version: None page: 241 - 254 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1979' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting development of the zebrafish inner ear and lateral line type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4154' abstract: - lang: eng text: As part of a large scale chemical mutagenesis screen of the zebrafish (Danio rerio) genome, we have identified 33 mutants with defects in hematopoiesis, Complementation analysis placed 32 of these mutants into 17 complementation groups, The allelism of the remaining 1 blood mutant is currently unresolved, We have categorized these blood mutants into four phenotypic classes based on analyses of whole embryos and isolated blood cells, as well as by in situ hybridization using the hematopoietic transcription factors GATA-1 and GATA-2, Embryos mutant for the gene moonshine have few if any proerythroblasts visible on the day circulation begins and normal erythroid cell differentiation is blocked as determined by staining for hemoglobin and GATA-1 expression, Mutations in five genes, chablis, frascati, merlot, retsina, thunderbird and two possibly unique mutations cause a progressive decrease in the number of blood cells during the first 5 days of development, Mutations in another seven genes, chardonnay, chianti, grenache, sauternes, weibherbst and zinfandel, and two additional mutations result in hypochromic blood cells which also decrease in number as development proceeds, Several of these mutants have immature cells in the circulation, indicating a block in normal erythroid development. The mutation in zinfandel is dominant, and 2-day old heterozygous carriers fail to express detectable levels of hemoglobin and have decreasing numbers of circulating cells during the first 5 days of development, Mutations in two genes, freixenet and yquem, result in the animals that are photosensitive with autofluorescent blood, similar to that found in the human congenital porphyrias, The collection of mutants presented here represent several steps required for normal erythropoiesis, The analysis of these mutants provides a powerful approach towards defining the molecular mechanisms involved in vertebrate hematopoietic development. acknowledgement: 'We thank Leonard Zon for his generous support of D. G. R. and A. B., for critical review of this manuscript and for many helpful discussions. We also thank Lauren Barone and Stephen Pratt for technical assistance. D. G. R. is a postdoctoral fellow of the Howard Hughes Medical Institute. ' article_processing_charge: No article_type: original author: - first_name: David full_name: Ransom, David last_name: Ransom - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Alison full_name: Brownlie, Alison last_name: Brownlie - first_name: Elisabeth full_name: Vogelsang, Elisabeth last_name: Vogelsang - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Ransom D, Haffter P, Odenthal J, et al. Characterization of zebrafish mutants with defects in embryonic hematopoiesis. Development. 1996;123(1):311-319. doi:10.1242/dev.123.1.311 apa: Ransom, D., Haffter, P., Odenthal, J., Brownlie, A., Vogelsang, E., Kelsh, R., … Nüsslein Volhard, C. (1996). Characterization of zebrafish mutants with defects in embryonic hematopoiesis. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.311 chicago: Ransom, David, Pascal Haffter, Jörg Odenthal, Alison Brownlie, Elisabeth Vogelsang, Robert Kelsh, Michael Brand, et al. “Characterization of Zebrafish Mutants with Defects in Embryonic Hematopoiesis.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.311. ieee: D. Ransom et al., “Characterization of zebrafish mutants with defects in embryonic hematopoiesis,” Development, vol. 123, no. 1. Company of Biologists, pp. 311–319, 1996. ista: Ransom D, Haffter P, Odenthal J, Brownlie A, Vogelsang E, Kelsh R, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Mullins M, Nüsslein Volhard C. 1996. Characterization of zebrafish mutants with defects in embryonic hematopoiesis. Development. 123(1), 311–319. mla: Ransom, David, et al. “Characterization of Zebrafish Mutants with Defects in Embryonic Hematopoiesis.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 311–19, doi:10.1242/dev.123.1.311. short: D. Ransom, P. Haffter, J. Odenthal, A. Brownlie, E. Vogelsang, R. Kelsh, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, M. Mullins, C. Nüsslein Volhard, Development 123 (1996) 311–319. date_created: 2018-12-11T12:07:16Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-08T08:23:35Z day: '01' doi: 10.1242/dev.123.1.311 extern: '1' external_id: pmid: - '9007251' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 311 - 319 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1966' quality_controlled: '1' scopus_import: '1' status: public title: Characterization of zebrafish mutants with defects in embryonic hematopoiesis type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4156' abstract: - lang: eng text: 'In a large scale screen for mutants that affect the early development of the zebrafish, 109 mutants were found that cause defects in the formation of the jaw and the more posterior pharyngeal arches, Here we present the phenotypic description and results of the complementation analysis of mutants belonging to two major classes: (1) mutants with defects in the mandibular and hyoid arches and (2) mutants with defects in cartilage differentiation and growth in all arches, Mutations in four of the genes identified during the screen show specific defects in the first two arches and leave the more posterior pharyngeal arches largely unaffected (schmerle, sucker, hoover and sturgeon). In these mutants ventral components of the mandibular and hyoid arches are reduced (Meckel''s cartilage and ceratohyal cartilage) whereas dorsal structures (palato-quadrate and hyosymplectic cartilages) are of normal size or enlarged, Thus, mutations in single genes cause defects in the formation of first and second arch structures but also differentially affect development of the dorsal and ventral structures within one arch. In 27 mutants that define at least 8 genes, the differentiation of cartilage and growth is affected. In hammerhead mutants particularly the mesodermally derived cartilages are reduced, whereas jellyfish mutant larvae are characterized by a severe reduction of all cartilaginous elements, leaving only two pieces in the position of the ceratohyal cartilages. In all other mutant larvae all skeletal elements are present, but consist of smaller and disorganized chondrocytes. These mutants also exhibit shortened heads and reduced pectoral fins. In homozygous knorrig embryos, tumor-like outgrowths of chondrocytes occur along the edges of all cartilaginous elements. The mutants presented here may be valuable tools for elucidating the genetic mechanisms that underlie the development of the mandibular and the hyoid arches, as well as the process of cartilage differentiation.' acknowledgement: We would like to thank Siegfried Roth, Stefan Schulte-Merker and Tanya Whitfield for critically reading the manuscript. article_processing_charge: No article_type: original author: - first_name: Tatjana full_name: Piotrowski, Tatjana last_name: Piotrowski - first_name: Thomas full_name: Schilling, Thomas last_name: Schilling - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Heiner full_name: Grandel, Heiner last_name: Grandel - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: 'Piotrowski T, Schilling T, Brand M, et al. Jaw and branchial arch mutants in zebrafish II: Anterior arches and cartilage differentiation. Development. 1996;123(1):345-356. doi:10.1242/dev.123.1.345' apa: 'Piotrowski, T., Schilling, T., Brand, M., Jiang, Y., Heisenberg, C.-P. J., Beuchle, D., … Nüsslein Volhard, C. (1996). Jaw and branchial arch mutants in zebrafish II: Anterior arches and cartilage differentiation. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.345' chicago: 'Piotrowski, Tatjana, Thomas Schilling, Michael Brand, Yunjin Jiang, Carl-Philipp J Heisenberg, Dirk Beuchle, Heiner Grandel, et al. “Jaw and Branchial Arch Mutants in Zebrafish II: Anterior Arches and Cartilage Differentiation.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.345.' ieee: 'T. Piotrowski et al., “Jaw and branchial arch mutants in zebrafish II: Anterior arches and cartilage differentiation,” Development, vol. 123, no. 1. Company of Biologists, pp. 345–356, 1996.' ista: 'Piotrowski T, Schilling T, Brand M, Jiang Y, Heisenberg C-PJ, Beuchle D, Grandel H, Van Eeden F, Furutani Seiki M, Granato M, Haffter P, Hammerschmidt M, Kane D, Kelsh R, Mullins M, Odenthal J, Warga R, Nüsslein Volhard C. 1996. Jaw and branchial arch mutants in zebrafish II: Anterior arches and cartilage differentiation. Development. 123(1), 345–356.' mla: 'Piotrowski, Tatjana, et al. “Jaw and Branchial Arch Mutants in Zebrafish II: Anterior Arches and Cartilage Differentiation.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 345–56, doi:10.1242/dev.123.1.345.' short: T. Piotrowski, T. Schilling, M. Brand, Y. Jiang, C.-P.J. Heisenberg, D. Beuchle, H. Grandel, F. Van Eeden, M. Furutani Seiki, M. Granato, P. Haffter, M. Hammerschmidt, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, R. Warga, C. Nüsslein Volhard, Development 123 (1996) 345–356. date_created: 2018-12-11T12:07:17Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-08T08:13:07Z day: '01' doi: 10.1242/dev.123.1.345 extern: '1' external_id: pmid: - '9007254 ' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 345 - 356 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1963' quality_controlled: '1' scopus_import: '1' status: public title: 'Jaw and branchial arch mutants in zebrafish II: Anterior arches and cartilage differentiation' type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4191' abstract: - lang: eng text: In a screen for embryonic mutants in the zebrafish a large number of mutants were isolated with abnormal brain morphology, We describe here 26 mutants in 13 complementation groups that show abnormal development of large regions of the brain, Early neurogenesis is affected in white tail (wit), During segmentation stages, homozygous wit embryos display an irregularly formed neural keel, particularly in the hindbrain, Using a variety of molecular markers, a severe increase in the number of various early differentiating neurons can be demonstrated, In contrast, late differentiating neurons, radial glial cells and some nonneural cell types, such as the neural crest-derived melanoblasts, are much reduced, Somitogenesis appears delayed, In addition, very reduced numbers of melanophores are present posterior to the mid-trunk, The wit phenotype is reminiscent of neurogenic mutants in Drosophila, such as Notch or Delta, In mutant parachute (pac) embryos the general organization of the hindbrain is disturbed and many rounded cells accumulate loosely in the hindbrain and midbrain ventricles, Mutants in a group of 6 genes, snakehead(snk), natter (nat), otter (ott) fullbrain (ful) viper (vip) and white snake (wis) develop collapsed brain ventricles, before showing signs of general degeneration, atlantis (atl), big head (bid), wicked brain (win), scabland (sbd) and eisspalte (ele) mutants have different malformation of the brain folds, Some of them have transient phenotypes, and mutant individuals may grow up to adults. acknowledgement: We would like to thank Vladimir Korzh, Stefan Krauss, Monte Westerfield, Tom Jessell, Mark Fishman, Eric Weinberg, Andreas Püschel, Trevor Jowett and Jóse Campos-Ortega for providing antibodies and cDNA clones. We thank Suresh Jesuthasan and Tanya Whitfield for many helpful suggestions on the manuscript. Y.-J. J. wants to thank Christian Müller and Ralf Rupp for their instructive discussion. Y.-J. J. is a predoctoral fellow supported by Deutscher Akademischer Austauschdienst (DAAD). article_processing_charge: No article_type: original author: - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Jiang Y, Brand M, Heisenberg C-PJ, et al. Mutations affecting neurogenesis and brain morphology in the zebrafish, Danio rerio. Development. 1996;123(1):205-216. doi:10.1242/dev.123.1.205 apa: Jiang, Y., Brand, M., Heisenberg, C.-P. J., Beuchle, D., Furutani Seiki, M., Kelsh, R., … Nüsslein Volhard, C. (1996). Mutations affecting neurogenesis and brain morphology in the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.205 chicago: Jiang, Yunjin, Michael Brand, Carl-Philipp J Heisenberg, Dirk Beuchle, Makoto Furutani Seiki, Robert Kelsh, Rachel Warga, et al. “Mutations Affecting Neurogenesis and Brain Morphology in the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.205. ieee: Y. Jiang et al., “Mutations affecting neurogenesis and brain morphology in the zebrafish, Danio rerio,” Development, vol. 123, no. 1. Company of Biologists, pp. 205–216, 1996. ista: Jiang Y, Brand M, Heisenberg C-PJ, Beuchle D, Furutani Seiki M, Kelsh R, Warga R, Granato M, Haffter P, Hammerschmidt M, Kane D, Mullins M, Odenthal J, Van Eeden F, Nüsslein Volhard C. 1996. Mutations affecting neurogenesis and brain morphology in the zebrafish, Danio rerio. Development. 123(1), 205–216. mla: Jiang, Yunjin, et al. “Mutations Affecting Neurogenesis and Brain Morphology in the Zebrafish, Danio Rerio.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 205–16, doi:10.1242/dev.123.1.205. short: Y. Jiang, M. Brand, C.-P.J. Heisenberg, D. Beuchle, M. Furutani Seiki, R. Kelsh, R. Warga, M. Granato, P. Haffter, M. Hammerschmidt, D. Kane, M. Mullins, J. Odenthal, F. Van Eeden, C. Nüsslein Volhard, Development 123 (1996) 205–216. date_created: 2018-12-11T12:07:30Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-05T09:13:51Z day: '01' doi: 10.1242/dev.123.1.205 extern: '1' external_id: pmid: - '9007241' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 205 - 216 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1926' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting neurogenesis and brain morphology in the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4186' abstract: - lang: eng text: 'Neural crest development involves cell-fate specification, proliferation, patterned cell migration, survival and differentiation, Zebrafish neural crest derivatives include three distinct chromatophores, which are well-suited to genetic analysis of their development, As part of a large-scale mutagenesis screen for embryonic/early larval mutations, we have isolated 285 mutations affecting all aspects of zebrafish larval pigmentation, By complementation analysis, we define 94 genes, We show here that comparison of their phenotypes permits classification of these mutations according to the types of defects they cause, and these suggest which process of neural crest development is probably affected, Mutations in eight genes affect the number of chromatophores: these include strong candidates for genes necessary for the processes of pigment cell specification and proliferation, Mutations in five genes remove part of the wild-type pigment pattern, and suggest a role in larval pigment pattern formation, Mutations in five genes show ectopic chromatophores in distinct sites, and may have implications for chromatophore patterning and proliferation, 76 genes affect pigment or morphology of one or more chromatophore types: these mutations include strong candidates for genes important in various aspects of chromatophore differentiation and survival, In combination with the embryological advantages of zebrafish, these mutations should permit cellular and molecular dissection of many aspects of neural crest development.' acknowledgement: We wish to thank Drs Judith Eisen, Steve Johnson, Dave Raible and Jim Weston for valuable comments. R. N. K. was supported by a NATO Postdoctoral Fellowship. article_processing_charge: No article_type: original author: - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Shuo full_name: Lin, Shuo last_name: Lin - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Lisa full_name: Vogelsang, Lisa last_name: Vogelsang - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Kelsh R, Brand M, Jiang Y, et al. Zebrafish pigmentation mutations and the processes of neural crest development. Development. 1996;123(1):369-389. doi:10.1242/dev.123.1.369 apa: Kelsh, R., Brand, M., Jiang, Y., Heisenberg, C.-P. J., Lin, S., Haffter, P., … Nüsslein Volhard, C. (1996). Zebrafish pigmentation mutations and the processes of neural crest development. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.369 chicago: Kelsh, Robert, Michael Brand, Yunjin Jiang, Carl-Philipp J Heisenberg, Shuo Lin, Pascal Haffter, Jörg Odenthal, et al. “Zebrafish Pigmentation Mutations and the Processes of Neural Crest Development.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.369. ieee: R. Kelsh et al., “Zebrafish pigmentation mutations and the processes of neural crest development,” Development, vol. 123, no. 1. Company of Biologists, pp. 369–389, 1996. ista: Kelsh R, Brand M, Jiang Y, Heisenberg C-PJ, Lin S, Haffter P, Odenthal J, Mullins M, Van Eeden F, Furutani Seiki M, Granato M, Hammerschmidt M, Kane D, Warga R, Beuchle D, Vogelsang L, Nüsslein Volhard C. 1996. Zebrafish pigmentation mutations and the processes of neural crest development. Development. 123(1), 369–389. mla: Kelsh, Robert, et al. “Zebrafish Pigmentation Mutations and the Processes of Neural Crest Development.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 369–89, doi:10.1242/dev.123.1.369. short: R. Kelsh, M. Brand, Y. Jiang, C.-P.J. Heisenberg, S. Lin, P. Haffter, J. Odenthal, M. Mullins, F. Van Eeden, M. Furutani Seiki, M. Granato, M. Hammerschmidt, D. Kane, R. Warga, D. Beuchle, L. Vogelsang, C. Nüsslein Volhard, Development 123 (1996) 369–389. date_created: 2018-12-11T12:07:28Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-05T11:16:49Z day: '01' doi: 10.1242/dev.123.1.369 extern: '1' external_id: pmid: - '9007256 ' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 369 - 389 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1933' quality_controlled: '1' scopus_import: '1' status: public title: Zebrafish pigmentation mutations and the processes of neural crest development type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4189' abstract: - lang: eng text: 'This report describes mutants of the zebrafish having phenotypes causing a general arrest in early morphogenesis. These mutants identify a group of loci making up about 20% of the loci identified by mutants with visible morphological phenotypes within the first day of development. There are 12 Class I mutants, which fall into 5 complementation groups and have cells that lyse before morphological defects are observed. Mutants at three loci, speed bump, ogre and zombie, display abnormal nuclei. The 8 Class II mutants, which fall into 6 complementation groups, arrest development before cell lysis is observed. These mutants seemingly stop development in the late segmentation stages, and maintain a body shape similar to a 20 hour embryo. Mutations in speed bump, ogre, zombie, specter, poltergeist and troll were tested for cell lethality by transplanting mutant cells into wild-type hosts. With poltergeist, transplanted mutant cells all survive. The remainder of the mutants tested were autonomously but conditionally lethal: mutant cells, most of which lyse, sometimes survive to become notochord, muscles, or, in rare cases, large neurons, all cell types which become postmitotic in the gastrula. Some of the genes of the early arrest group may be necessary for progression though the cell cycle; if so, the survival of early differentiating cells may be based on having their terminal mitosis before the zygotic requirement for these genes.' acknowledgement: We thank Dr Adam Felsenfeld for his careful comments on earlier drafts of this manuscript, D. A. K. also thanks the two anonymous referees who patiently pointed out a number of ‘speed bumps’ in the first submitted draft of this manuscript. This work was supported in part by a grant from the National Institutes of Health to D. A. K. article_processing_charge: No article_type: original author: - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Hans full_name: Maischein, Hans last_name: Maischein - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Kane D, Maischein H, Brand M, et al. The zebrafish early arrest mutants. Development. 1996;123(1):57-66. doi:10.1242/dev.123.1.57 apa: Kane, D., Maischein, H., Brand, M., Van Eeden, F., Furutani Seiki, M., Granato, M., … Nüsslein Volhard, C. (1996). The zebrafish early arrest mutants. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.57 chicago: Kane, Donald, Hans Maischein, Michael Brand, Fredericus Van Eeden, Makoto Furutani Seiki, Michael Granato, Pascal Haffter, et al. “The Zebrafish Early Arrest Mutants.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.57 . ieee: D. Kane et al., “The zebrafish early arrest mutants,” Development, vol. 123, no. 1. Company of Biologists, pp. 57–66, 1996. ista: Kane D, Maischein H, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Haffter P, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kelsh R, Mullins M, Odenthal J, Warga R, Nüsslein Volhard C. 1996. The zebrafish early arrest mutants. Development. 123(1), 57–66. mla: Kane, Donald, et al. “The Zebrafish Early Arrest Mutants.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 57–66, doi:10.1242/dev.123.1.57 . short: D. Kane, H. Maischein, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, P. Haffter, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, R. Kelsh, M. Mullins, J. Odenthal, R. Warga, C. Nüsslein Volhard, Development 123 (1996) 57–66. date_created: 2018-12-11T12:07:29Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-05T09:43:44Z day: '01' doi: '10.1242/dev.123.1.57 ' extern: '1' external_id: pmid: - '9007229 ' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 57 - 66 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1931' quality_controlled: '1' scopus_import: '1' status: public title: The zebrafish early arrest mutants type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4188' abstract: - lang: eng text: 'Epiboly, the enveloping of the yolk cell by the blastoderm, is the first zebrafish morphogenetic movement, We isolated four mutations that affect epiboly: half baked, avalanche, lawine and weg, Homozygous mutant embryos arrest the vegetal progress of the deep cells of the blastoderm; only the yolk syncytial layer of the yolk cell and the enveloping layer of the blastoderm reach the vegetal pole of the embryo, The mutations half baked, avalanche and lawine produce a novel dominant effect, termed a zygotic-maternal dominant effect: heterozygous embryos produced from heterozygous females slow down epiboly and accumulate detached cells over the neural tube; a small fraction of these mutant individuals are viable, Heterozygous embryos produced from heterozygous males crossed to homozygous wild-type females complete epiboly normally and are completely viable. Additionally, embryos heterozygous for half baked have an enlarged hatching gland, a partial dominant phenotype, The phenotypes of these mutants demonstrate that, for the spreading of cells during epiboly, the movement of the deep cells of the blastoderm require the function of genes that are not necessary for the movement of the enveloping layer or the yolk cell, Furthermore, the dominant zygotic-maternal effect phenotypes illustrate the maternal and zygotic interplay of genes that orchestrate the early cell movements of the zebrafish.' acknowledgement: We thank Drs John Postlethwait and Sigfreid Roth for their helpful comments on earlier drafts of this paper. This work was supported in part by a grant from the National Institutes of Health to D. A. K. article_processing_charge: No article_type: original author: - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Hans full_name: Maischein, Hans last_name: Maischein - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Kane D, Hammerschmidt M, Mullins M, et al. The zebrafish epiboly mutants. Development. 1996;123(1):47-55. doi:10.1242/dev.123.1.47 apa: Kane, D., Hammerschmidt, M., Mullins, M., Maischein, H., Brand, M., Van Eeden, F., … Nüsslein Volhard, C. (1996). The zebrafish epiboly mutants. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.47 chicago: Kane, Donald, Matthias Hammerschmidt, Mary Mullins, Hans Maischein, Michael Brand, Fredericus Van Eeden, Makoto Furutani Seiki, et al. “The Zebrafish Epiboly Mutants.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.47 . ieee: D. Kane et al., “The zebrafish epiboly mutants,” Development, vol. 123, no. 1. Company of Biologists, pp. 47–55, 1996. ista: Kane D, Hammerschmidt M, Mullins M, Maischein H, Brand M, Van Eeden F, Furutani Seiki M, Granato M, Haffter P, Heisenberg C-PJ, Jiang Y, Kelsh R, Odenthal J, Warga R, Nüsslein Volhard C. 1996. The zebrafish epiboly mutants. Development. 123(1), 47–55. mla: Kane, Donald, et al. “The Zebrafish Epiboly Mutants.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 47–55, doi:10.1242/dev.123.1.47 . short: D. Kane, M. Hammerschmidt, M. Mullins, H. Maischein, M. Brand, F. Van Eeden, M. Furutani Seiki, M. Granato, P. Haffter, C.-P.J. Heisenberg, Y. Jiang, R. Kelsh, J. Odenthal, R. Warga, C. Nüsslein Volhard, Development 123 (1996) 47–55. date_created: 2018-12-11T12:07:29Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-05T09:22:40Z day: '01' doi: '10.1242/dev.123.1.47 ' extern: '1' external_id: pmid: - '9007228 ' intvolume: ' 123' issue: '1' language: - iso: eng month: '12' oa_version: None page: 47 - 55 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1930' quality_controlled: '1' scopus_import: '1' status: public title: The zebrafish epiboly mutants type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4203' abstract: - lang: eng text: 'We identified four zebrafish mutants with defects in forebrain induction and patterning during embryogenesis. The four mutants define three genes: masterblind (mbl), silverblick (slb), and knollnase (kas), In mbl embryos, the anterior forebrain acquires posterior forebrain characteristics: anterior structures such as the eyes, olfactory placodes and the telencephalon are missing, whereas the epiphysis located in the posterior forebrain is expanded, In slb embryos, the extension of the embryonic axis is initially delayed and eventually followed by a partial fusion of the eyes, Finally, in kas embryos, separation of the telencephalic primordia is incomplete and dorsal midline cells fail to form a differentiated roof plate, Analysis of the mutant phenotypes indicates that we have identified genes essential for the specification of the anterior forebrain (mbl), positioning of the eyes (slb) and differentiation of the roof plate (kas). In an appendix to this study we list mutants showing alterations in the size of the eyes and abnormal differentiation of the lenses.' acknowledgement: We thank E. Weinberg for the kind gift of myoD, zotx-2 and zash1b cDNA, I. Mikkola and S. Krauss for providing pax2/6 antibodies and shh cDNA, and V. Korzh for providing the pan-islet antibody. We are grateful to S. Wilson for help with the initial characterization of the mbl phenotype and many valuable comments on the manuscript. We would also like to thank Robert Geisler, Suresh Jesuthasan, Rolf Karlstrom, Stefan Schulte-Merker and Siegfried Roth for critical reading of the manuscript. article_processing_charge: No article_type: original author: - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Heisenberg C-PJ, Brand M, Jiang Y, et al. Genes involved in forebrain development in the zebrafish, Danio rerio. Development. 1996;123:191-203. doi:10.1242/dev.123.1.191 apa: Heisenberg, C.-P. J., Brand, M., Jiang, Y., Warga, R., Beuchle, D., Van Eeden, F., … Nüsslein Volhard, C. (1996). Genes involved in forebrain development in the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.191 chicago: Heisenberg, Carl-Philipp J, Michael Brand, Yunjin Jiang, Rachel Warga, Dirk Beuchle, Fredericus Van Eeden, Makoto Furutani Seiki, et al. “Genes Involved in Forebrain Development in the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.191 . ieee: C.-P. J. Heisenberg et al., “Genes involved in forebrain development in the zebrafish, Danio rerio,” Development, vol. 123. Company of Biologists, pp. 191–203, 1996. ista: Heisenberg C-PJ, Brand M, Jiang Y, Warga R, Beuchle D, Van Eeden F, Furutani Seiki M, Granato M, Haffter P, Hammerschmidt M, Kane D, Kelsh R, Mullins M, Odenthal J, Nüsslein Volhard C. 1996. Genes involved in forebrain development in the zebrafish, Danio rerio. Development. 123, 191–203. mla: Heisenberg, Carl-Philipp J., et al. “Genes Involved in Forebrain Development in the Zebrafish, Danio Rerio.” Development, vol. 123, Company of Biologists, 1996, pp. 191–203, doi:10.1242/dev.123.1.191 . short: C.-P.J. Heisenberg, M. Brand, Y. Jiang, R. Warga, D. Beuchle, F. Van Eeden, M. Furutani Seiki, M. Granato, P. Haffter, M. Hammerschmidt, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, C. Nüsslein Volhard, Development 123 (1996) 191–203. date_created: 2018-12-11T12:07:34Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-05T08:06:15Z day: '01' doi: '10.1242/dev.123.1.191 ' extern: '1' external_id: pmid: - '9007240 ' intvolume: ' 123' language: - iso: eng month: '12' oa_version: None page: 191 - 203 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1913' quality_controlled: '1' scopus_import: '1' status: public title: Genes involved in forebrain development in the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4216' abstract: - lang: eng text: Tissues of the dorsal midline of vertebrate embryos, such as notochord and floor plate, have been implicated in inductive interactions that pattern the neural tube and somites. In our screen for embryonic visible mutations in the zebrafish we found 113 mutations in more than 27 genes with altered body shape, often with additional defects in CNS development. We concentrated on a subgroup of mutations in ten genes (the midline-group) that cause defective development of the floor plate. By using floor plate markers, such as the signaling molecule sonic hedgehog, we show that the schmalspur (sur) gene is needed for early floor plate development, similar to one-eyed-pinhead (oep) and the previously described cyclops (eye) gene. In contrast to oep and cyc, sur embryos show deletions of ventral CNS tissue restricted to the mid- and hindbrain, whereas the forebrain appears largely unaffected. In the underlying mesendodermal tissue of the head, sur is needed only for development of the posterior prechordal plate, whereas oep and eye are required for both anterior and posterior prechordal plate development. Our analysis of sur mutants suggests that defects within the posterior prechordal plate may cause aberrant development of ventral CNS structures in the mid- and hindbrain. Later development of the floor plate is affected in mutant chameleon, you-too, sonic-you, iguana, detour, schmalkars and monorail embryos; these mutants often show additional defects in tissues that are known to depend on signals from notochord and floor plate, For example, sur, con, and yot mutants show reduction of motor neurons; median deletions of brain tissue are seen in sur, con and yot embryos; and eye, con, yet, igu and dtr mutants often show no or abnormal formation of the optic chiasm. We also find fusions of the ventral neurocranium for all midline mutants tested, which may reveal a hitherto unrecognized function of the midline in influencing differentiation of neural crest cells at their destination. As a working hypothesis, we propose that midline-group genes may act to maintain proper structure and inductive function of zebrafish midline tissues. acknowledgement: "We would like to thank our colleagues in the zebrafish community for generously sharing antibodies and probes, in particular PhilIngham, Stefan Krauss and Vladimir Korzh, as well as Tom Jessel, Trevor Jowett, Anders Molven, Eric Weinberg and Monte Westerfield. M. B. thanks Steve Wilson for comments on the manuscript, his colleagues at the institute for numerous discussions, Inge Zimmermann for patient sectioning, and Silke Hein for help during the final\r\nstages of this work. M. B. was supported by a Helmholtz stipend of the BMFT." article_processing_charge: No article_type: original author: - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Francisco full_name: Pelegri, Francisco last_name: Pelegri - first_name: Rolf full_name: Karlstrom, Rolf last_name: Karlstrom - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Alexander full_name: Picker, Alexander last_name: Picker - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Brand M, Heisenberg C-PJ, Warga R, et al. Mutations affecting development of the midline and general body shape during zebrafish embryogenesis. Development. 1996;123(1):129-142. doi:10.1242/dev.123.1.129 apa: Brand, M., Heisenberg, C.-P. J., Warga, R., Pelegri, F., Karlstrom, R., Beuchle, D., … Nüsslein Volhard, C. (1996). Mutations affecting development of the midline and general body shape during zebrafish embryogenesis. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.129 chicago: Brand, Michael, Carl-Philipp J Heisenberg, Rachel Warga, Francisco Pelegri, Rolf Karlstrom, Dirk Beuchle, Alexander Picker, et al. “Mutations Affecting Development of the Midline and General Body Shape during Zebrafish Embryogenesis.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.129 . ieee: M. Brand et al., “Mutations affecting development of the midline and general body shape during zebrafish embryogenesis,” Development, vol. 123, no. 1. Company of Biologists, pp. 129–142, 1996. ista: Brand M, Heisenberg C-PJ, Warga R, Pelegri F, Karlstrom R, Beuchle D, Picker A, Jiang Y, Furutani Seiki M, Van Eeden F, Granato M, Haffter P, Hammerschmidt M, Kane D, Kelsh R, Mullins M, Odenthal J, Nüsslein Volhard C. 1996. Mutations affecting development of the midline and general body shape during zebrafish embryogenesis. Development. 123(1), 129–142. mla: Brand, Michael, et al. “Mutations Affecting Development of the Midline and General Body Shape during Zebrafish Embryogenesis.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 129–42, doi:10.1242/dev.123.1.129 . short: M. Brand, C.-P.J. Heisenberg, R. Warga, F. Pelegri, R. Karlstrom, D. Beuchle, A. Picker, Y. Jiang, M. Furutani Seiki, F. Van Eeden, M. Granato, P. Haffter, M. Hammerschmidt, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, C. Nüsslein Volhard, Development 123 (1996) 129–142. date_created: 2018-12-11T12:07:38Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T12:55:13Z day: '01' doi: '10.1242/dev.123.1.129 ' extern: '1' external_id: pmid: - '9007235 ' intvolume: ' 123' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://journals.biologists.com/dev/article/123/1/129/39318/Mutations-affecting-development-of-the-midline-and month: '12' oa: 1 oa_version: Published Version page: 129 - 142 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1900' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting development of the midline and general body shape during zebrafish embryogenesis type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4219' abstract: - lang: eng text: 'Mutations in two genes affect the formation of the boundary between midbrain and hindbrain (MHB): no isthmus (noi) and acerebellar (ace), noi mutant embryos lack the MHB constriction, the cerebellum and optic tectum, as well as the pronephric duct. Analysis of noi mutant embryos with neuron-specific antibodies shows that the MHB region and the dorsal and ventral midbrain are absent or abnormal, but that the rostral hindbrain is unaffected with the exception of the cerebellum, Using markers that are expressed during its formation (eng, wnt1 and pax-b), we find that the MHB region is already misspecified in noi mutant embryos during late gastrulation. The tectum is initially present and later degenerates, The defect in ace mutant embryos is more restricted: MHB and cerebellum are absent, but a tectum is formed, Molecular organisation of the tectum and tegmentum is disturbed, however, since eng, wntl and pax-b marker gene expression is not maintained, We propose that noi and ace are required for development of the MHB region and of the adjacent mid- and hindbrain, which are thought to be patterned by the MHB region, Presence of pax-b RNA, and absence of pax-b protein, together with the observation of genetic linkage and the occurrence of a point mutation, show that noi mutations are located in the pax-b gene, pax-b is a vertebrate orthologue of the Drosophila gene paired, which is involved in a pathway of cellular interactions at the posterior compartment boundary in Drosophila, Our results confirm and extend a previous report, and show that at least one member of this conserved signalling pathway is required for formation of the boundary between midbrain and hindbrain in the zebrafish.' acknowledgement: "We would like to thank our colleagues in the zebrafish community for generously sharing antibodies and probes, in particular Terje Johannsen, Vladimir Korzh, Stefan Krauss and Ingvild Mikkola, as well as Christine Dreyer, Nigel Holder, Tom Jessel, Trevor Jowett, Anders Molven, Eric Weinberg and Monte Westerfield. M.B would like to thank his colleagues for numerous discussions, and Francisco Pelegri, Suresh Jesuthasan and Luis Puelles for comments on the\r\nmanuscipt. Thanks also to Peter Andermann and Eric Weinberg, who helped in the analysis of Zash expression, and especially to Corinne Houart, for her lovely in situ protocol and many discussions. Silke Hein helped greatly in final stages of this work. M.B. was supported by a Helmholtz stipend of the BMFT." article_processing_charge: No article_type: original author: - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Dirk full_name: Beuchle, Dirk last_name: Beuchle - first_name: Klaus full_name: Lun, Klaus last_name: Lun - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Brand M, Heisenberg C-PJ, Jiang Y, et al. Mutations in zebrafish genes affecting the formation of the boundary between midbrain and hindbrain. Development. 1996;123(1):179-190. doi:10.1242/dev.123.1.179 apa: Brand, M., Heisenberg, C.-P. J., Jiang, Y., Beuchle, D., Lun, K., Furutani Seiki, M., … Nüsslein Volhard, C. (1996). Mutations in zebrafish genes affecting the formation of the boundary between midbrain and hindbrain. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.179 chicago: Brand, Michael, Carl-Philipp J Heisenberg, Yunjin Jiang, Dirk Beuchle, Klaus Lun, Makoto Furutani Seiki, Michael Granato, et al. “Mutations in Zebrafish Genes Affecting the Formation of the Boundary between Midbrain and Hindbrain.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.179 . ieee: M. Brand et al., “Mutations in zebrafish genes affecting the formation of the boundary between midbrain and hindbrain,” Development, vol. 123, no. 1. Company of Biologists, pp. 179–190, 1996. ista: Brand M, Heisenberg C-PJ, Jiang Y, Beuchle D, Lun K, Furutani Seiki M, Granato M, Haffter P, Hammerschmidt M, Kane D, Kelsh R, Mullins M, Odenthal J, Van Eeden F, Nüsslein Volhard C. 1996. Mutations in zebrafish genes affecting the formation of the boundary between midbrain and hindbrain. Development. 123(1), 179–190. mla: Brand, Michael, et al. “Mutations in Zebrafish Genes Affecting the Formation of the Boundary between Midbrain and Hindbrain.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 179–90, doi:10.1242/dev.123.1.179 . short: M. Brand, C.-P.J. Heisenberg, Y. Jiang, D. Beuchle, K. Lun, M. Furutani Seiki, M. Granato, P. Haffter, M. Hammerschmidt, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, F. Van Eeden, C. Nüsslein Volhard, Development 123 (1996) 179–190. date_created: 2018-12-11T12:07:40Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T11:45:04Z day: '01' doi: '10.1242/dev.123.1.179 ' extern: '1' external_id: pmid: - '9007239 ' intvolume: ' 123' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://journals.biologists.com/dev/article/123/1/179/39324/Mutations-in-zebrafish-genes-affecting-the month: '12' oa: 1 oa_version: Published Version page: 179 - 190 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1899' quality_controlled: '1' scopus_import: '1' status: public title: Mutations in zebrafish genes affecting the formation of the boundary between midbrain and hindbrain type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4222' abstract: - lang: eng text: Somitogenesis is the basis of segmentation of the mesoderm in the trunk and tail of vertebrate embryos, Two groups of mutants with defects in this patterning process have been isolated in our screen for zygotic mutations affecting the embryonic development of the zebrafish (Danio rerio), In mutants of the first group, boundaries between individual somites are invisible early on, although the paraxial mesoderm is present, Later, irregular boundaries between somites are present, Mutations infused somites (fss) and beamter (bea) affect all somites, whereas mutations in deadly seven (des), after eight (aei) and white tail (wit) only affect the more posterior somites, Mutants of all genes but wit are homozygous viable and fertile, Skeletal stainings and the expression pattern of myoD and snail1 suggest that anteroposterior patterning within individual somites is abnormal, In the second group of mutants, formation of the horizontal myoseptum, which separates the dorsal and ventral part of the myotome, is reduced, Six genes have been defined in this group (you-type genes), yea-too mutants show the most severe phenotype; in these the adaxial cells, muscle pioneers and the primary motoneurons are affected, in addition to the horizontal myoseptum. The horizontal myoseptum is also missing in mutants that lack a notochord. The similarity of the somite phenotype in mutants lacking the notochord and in the you-type mutants suggests that the genes mutated in these two groups are involved in a signaling pathway from the notochord, important for patterning of the somites. acknowledgement: We would like to thank P. Ingham and T. Whitfield for valuable comments on the manuscript and cDNA probes, S. Schulte-Merker for the Ntl antibody and J. Eisen and R. BreMiller for the znp-1 antibody. article_processing_charge: No article_type: original author: - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Ursula full_name: Schach, Ursula last_name: Schach - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Miguel full_name: Allende, Miguel last_name: Allende - first_name: Eric full_name: Weinberg, Eric last_name: Weinberg - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Van Eeden F, Granato M, Schach U, et al. Mutations affecting somite formation and patterning in the zebrafish, Danio rerio. Development. 1996;123(1):153-164. doi:10.1242/dev.123.1.153 apa: Van Eeden, F., Granato, M., Schach, U., Brand, M., Furutani Seiki, M., Haffter, P., … Nüsslein Volhard, C. (1996). Mutations affecting somite formation and patterning in the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.153 chicago: Van Eeden, Fredericus, Michael Granato, Ursula Schach, Michael Brand, Makoto Furutani Seiki, Pascal Haffter, Matthias Hammerschmidt, et al. “Mutations Affecting Somite Formation and Patterning in the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.153. ieee: F. Van Eeden et al., “Mutations affecting somite formation and patterning in the zebrafish, Danio rerio,” Development, vol. 123, no. 1. Company of Biologists, pp. 153–164, 1996. ista: Van Eeden F, Granato M, Schach U, Brand M, Furutani Seiki M, Haffter P, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Kelsh R, Mullins M, Odenthal J, Warga R, Allende M, Weinberg E, Nüsslein Volhard C. 1996. Mutations affecting somite formation and patterning in the zebrafish, Danio rerio. Development. 123(1), 153–164. mla: Van Eeden, Fredericus, et al. “Mutations Affecting Somite Formation and Patterning in the Zebrafish, Danio Rerio.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 153–64, doi:10.1242/dev.123.1.153. short: F. Van Eeden, M. Granato, U. Schach, M. Brand, M. Furutani Seiki, P. Haffter, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, R. Warga, M. Allende, E. Weinberg, C. Nüsslein Volhard, Development 123 (1996) 153–164. date_created: 2018-12-11T12:07:41Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T09:29:56Z day: '01' doi: 10.1242/dev.123.1.153 extern: '1' external_id: pmid: - '9007237 ' intvolume: ' 123' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://journals.biologists.com/dev/article/123/1/153/39329/Mutations-affecting-somite-formation-and month: '12' oa: 1 oa_version: Published Version page: 153 - 164 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1895' quality_controlled: '1' scopus_import: '1' status: public title: Mutations affecting somite formation and patterning in the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4220' abstract: - lang: eng text: In the zebrafish, Danio rerio, a caudal and pectoral fin fold develop during embryogenesis. At larval stages the caudal fin fold is replaced by four different fins, the unpaired anal, dorsal and tail fins. In addition the paired pelvic fins are formed, We have identified a total of 118 mutations affecting larval fin formation, Mutations in 11 genes lead to abnormal morphology or degeneration of both caudal and pectoral fin folds, Most mutants survive to adulthood and form a surprisingly normal complement of adult fins, Mutations in nine genes result in an increased or reduced size of the pectoral fins, Interestingly, in mutants of one of these genes, dackel (dak), pectoral fin buds form initially, but later the fin epithelium fails to expand, Expression of sonic hedgehog mRNA in the posterior mesenchyme of the pectoral fin bud is initiated in dak embryos, but not maintained, Mutations in five other genes affect adult fin but not larval fin development, Two mutants, longfin (lof) and another longfin (alf) have generally longer fins. Stein und bein (sub) has reduced dorsal and pelvic fins, whereas finless (fls) and wanda (wan) mutants affect all adult fins, Finally, mutations in four genes causing defects in embryonic skin formation will be briefly reported. article_processing_charge: No article_type: original author: - first_name: Fredericus full_name: Van Eeden, Fredericus last_name: Van Eeden - first_name: Michael full_name: Granato, Michael last_name: Granato - first_name: Ursula full_name: Schach, Ursula last_name: Schach - first_name: Michael full_name: Brand, Michael last_name: Brand - first_name: Makoto full_name: Furutani Seiki, Makoto last_name: Furutani Seiki - first_name: Pascal full_name: Haffter, Pascal last_name: Haffter - first_name: Matthias full_name: Hammerschmidt, Matthias last_name: Hammerschmidt - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 - first_name: Yunjin full_name: Jiang, Yunjin last_name: Jiang - first_name: Donald full_name: Kane, Donald last_name: Kane - first_name: Robert full_name: Kelsh, Robert last_name: Kelsh - first_name: Mary full_name: Mullins, Mary last_name: Mullins - first_name: Jörg full_name: Odenthal, Jörg last_name: Odenthal - first_name: Rachel full_name: Warga, Rachel last_name: Warga - first_name: Christiane full_name: Nüsslein Volhard, Christiane last_name: Nüsslein Volhard citation: ama: Van Eeden F, Granato M, Schach U, et al. Genetic analysis of fin formation in the zebrafish, Danio rerio. Development. 1996;123(1):255-262. doi:10.1242/dev.123.1.255 apa: Van Eeden, F., Granato, M., Schach, U., Brand, M., Furutani Seiki, M., Haffter, P., … Nüsslein Volhard, C. (1996). Genetic analysis of fin formation in the zebrafish, Danio rerio. Development. Company of Biologists. https://doi.org/10.1242/dev.123.1.255 chicago: Van Eeden, Fredericus, Michael Granato, Ursula Schach, Michael Brand, Makoto Furutani Seiki, Pascal Haffter, Matthias Hammerschmidt, et al. “Genetic Analysis of Fin Formation in the Zebrafish, Danio Rerio.” Development. Company of Biologists, 1996. https://doi.org/10.1242/dev.123.1.255 . ieee: F. Van Eeden et al., “Genetic analysis of fin formation in the zebrafish, Danio rerio,” Development, vol. 123, no. 1. Company of Biologists, pp. 255–262, 1996. ista: Van Eeden F, Granato M, Schach U, Brand M, Furutani Seiki M, Haffter P, Hammerschmidt M, Heisenberg C-PJ, Jiang Y, Kane D, Kelsh R, Mullins M, Odenthal J, Warga R, Nüsslein Volhard C. 1996. Genetic analysis of fin formation in the zebrafish, Danio rerio. Development. 123(1), 255–262. mla: Van Eeden, Fredericus, et al. “Genetic Analysis of Fin Formation in the Zebrafish, Danio Rerio.” Development, vol. 123, no. 1, Company of Biologists, 1996, pp. 255–62, doi:10.1242/dev.123.1.255 . short: F. Van Eeden, M. Granato, U. Schach, M. Brand, M. Furutani Seiki, P. Haffter, M. Hammerschmidt, C.-P.J. Heisenberg, Y. Jiang, D. Kane, R. Kelsh, M. Mullins, J. Odenthal, R. Warga, C. Nüsslein Volhard, Development 123 (1996) 255–262. date_created: 2018-12-11T12:07:40Z date_published: 1996-12-01T00:00:00Z date_updated: 2022-08-04T10:01:17Z day: '01' doi: '10.1242/dev.123.1.255 ' extern: '1' external_id: pmid: - '9007245 ' intvolume: ' 123' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://journals.biologists.com/dev/article/123/1/255/39327/Genetic-analysis-of-fin-formation-in-the-zebrafish month: '12' oa: 1 oa_version: Published Version page: 255 - 262 pmid: 1 publication: Development publication_identifier: issn: - 0950-1991 publication_status: published publisher: Company of Biologists publist_id: '1896' quality_controlled: '1' scopus_import: '1' status: public title: Genetic analysis of fin formation in the zebrafish, Danio rerio type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 123 year: '1996' ... --- _id: '4294' abstract: - lang: eng text: 'Any sample of genes traces back to a single common ancestor. Each gene also has other properties: its sequence, its geographic location and the phenotype and fitness of the organism that carries it. With sexual reproduction, different genes have different genealogies, which gives us much more information, but also greatly complicates population genetic analysis. We review the close relation between the distribution of genealogies and the classic theory of identity by descent in spatially structured populations, and develop a simple diffusion approximation to the distribution of coalescence times in a homogeneous two-dimensional habitat. This shows that when neighbourhood size is large (as in most populations) only a small fraction of pairs of genes are closely related, and only this fraction gives information about current rates of gene flow. The increase of spatial dispersion with lineage age is thus a poor estimator of gene flow. The bulk of the genealogy depends on the long-term history of the population; we discuss ways of inferring this history from the concordance between genealogies across loci.' article_processing_charge: No author: - first_name: Nicholas H full_name: Barton, Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 - first_name: Ian full_name: Wilson, Ian last_name: Wilson citation: ama: 'Barton NH, Wilson I. Genealogies and geography. In: New Uses for New Phylogenies. Oxford University Press; 1996:23-56. doi:10.1098/rstb.1995.0090' apa: Barton, N. H., & Wilson, I. (1996). Genealogies and geography. In New uses for new phylogenies (pp. 23–56). Oxford University Press. https://doi.org/10.1098/rstb.1995.0090 chicago: Barton, Nicholas H, and Ian Wilson. “Genealogies and Geography.” In New Uses for New Phylogenies, 23–56. Oxford University Press, 1996. https://doi.org/10.1098/rstb.1995.0090. ieee: N. H. Barton and I. Wilson, “Genealogies and geography,” in New uses for new phylogenies, Oxford University Press, 1996, pp. 23–56. ista: 'Barton NH, Wilson I. 1996.Genealogies and geography. In: New uses for new phylogenies. , 23–56.' mla: Barton, Nicholas H., and Ian Wilson. “Genealogies and Geography.” New Uses for New Phylogenies, Oxford University Press, 1996, pp. 23–56, doi:10.1098/rstb.1995.0090. short: N.H. Barton, I. Wilson, in:, New Uses for New Phylogenies, Oxford University Press, 1996, pp. 23–56. date_created: 2018-12-11T12:08:05Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-08-04T08:59:18Z day: '01' doi: 10.1098/rstb.1995.0090 extern: '1' external_id: pmid: - '8748019' language: - iso: eng month: '01' oa_version: None page: 23 - 56 pmid: 1 publication: New uses for new phylogenies publication_identifier: isbn: - 978-0198549840 publication_status: published publisher: Oxford University Press publist_id: '1783' quality_controlled: '1' status: public title: Genealogies and geography type: book_chapter user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 year: '1996' ... --- _id: '4295' abstract: - lang: eng text: Genetic studies are beginning to provide insights into the evolutionary processes that reduce the fitness of hybrids between recently diverged species. However, the deleterious gene interactions responsible for this fitness reduction are still poorly understood. acknowledgement: Thanks to Brian Charlesworth, Jerry Coyne, Allen Orr and Michael Turelli for their comments on this note, and to the BBSRC and NERC for financial support. article_processing_charge: No author: - first_name: Nicholas H full_name: Barton, Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 citation: ama: 'Barton NH. Speciation: more than the sum of its parts. In: Current Biology. Vol 6. Cell Press; 1996:1244-1246. doi:10.1016/S0960-9822(02)70707-0' apa: 'Barton, N. H. (1996). Speciation: more than the sum of its parts. In Current Biology (Vol. 6, pp. 1244–1246). Cell Press. https://doi.org/10.1016/S0960-9822(02)70707-0' chicago: 'Barton, Nicholas H. “Speciation: More than the Sum of Its Parts.” In Current Biology, 6:1244–46. Cell Press, 1996. https://doi.org/10.1016/S0960-9822(02)70707-0.' ieee: 'N. H. Barton, “Speciation: more than the sum of its parts,” in Current Biology, vol. 6, Cell Press, 1996, pp. 1244–1246.' ista: 'Barton NH. 1996.Speciation: more than the sum of its parts. In: Current Biology. vol. 6, 1244–1246.' mla: 'Barton, Nicholas H. “Speciation: More than the Sum of Its Parts.” Current Biology, vol. 6, Cell Press, 1996, pp. 1244–46, doi:10.1016/S0960-9822(02)70707-0.' short: N.H. Barton, in:, Current Biology, Cell Press, 1996, pp. 1244–1246. date_created: 2018-12-11T12:08:06Z date_published: 1996-10-01T00:00:00Z date_updated: 2022-07-07T09:28:28Z day: '01' doi: 10.1016/S0960-9822(02)70707-0 extern: '1' external_id: pmid: - '8939554' intvolume: ' 6' language: - iso: eng main_file_link: - open_access: '1' url: https://www.sciencedirect.com/science/article/pii/S0960982202707070?via%3Dihub month: '10' oa: 1 oa_version: Published Version page: 1244 - 1246 pmid: 1 publication: Current Biology publication_identifier: issn: - 0960-9822 publication_status: published publisher: Cell Press publist_id: '1781' quality_controlled: '1' scopus_import: '1' status: public title: 'Speciation: more than the sum of its parts' type: book_chapter user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 6 year: '1996' ... --- _id: '4419' abstract: - lang: eng text: A {\em hybrid automaton\/} consists of a finite automaton interacting with a dynamical system. Hybrid automata are used to model embedded controllers and other systems that consist of interacting discrete and continuous components. A hybrid automaton is {\em rectangular\/} if each of its continuous variables~x satisfies a nondeterministic differential equation of the form a≤dxdt≤b, where a and~b are rational constants. Rectangular hybrid automata are particularly useful for the analysis of communication protocols in which local clocks have bounded drift, and for the conservative approximation of systems with more complex continuous behavior. We examine several verification problems on the class of rectangular hybrid automata, including reachability, temporal logic model checking, and controller synthesis. Both dense-time and discrete-time models are considered. We identify subclasses of rectangular hybrid automata for which these problems are decidable and give complexity analyses. An investigation of the structural properties of rectangular hybrid automata is undertaken. One method for proving the decidability of verification problems on infinite-state systems is to find finite quotient systems on which analysis can proceed. Three state-space equivalence relations with strong connections to temporal logic are bisimilarity, similarity, and language equivalence. We characterize the quotient spaces of rectangular hybrid automata with respect to these equivalence relations. article_processing_charge: No author: - first_name: Peter full_name: Kopke, Peter last_name: Kopke citation: ama: Kopke P. The Theory of Rectangular Hybrid Automata. 1996. apa: Kopke, P. (1996). The Theory of Rectangular Hybrid Automata. Cornell University. chicago: Kopke, Peter. “The Theory of Rectangular Hybrid Automata.” Cornell University, 1996. ieee: P. Kopke, “The Theory of Rectangular Hybrid Automata,” Cornell University, 1996. ista: Kopke P. 1996. The Theory of Rectangular Hybrid Automata. Cornell University. mla: Kopke, Peter. The Theory of Rectangular Hybrid Automata. Cornell University, 1996. short: P. Kopke, The Theory of Rectangular Hybrid Automata, Cornell University, 1996. date_created: 2018-12-11T12:08:45Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-06T15:11:24Z day: '01' extern: '1' language: - iso: eng month: '01' oa_version: None publication_status: published publisher: Cornell University publist_id: '312' status: public supervisor: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000-0002-2985-7724 title: The Theory of Rectangular Hybrid Automata type: dissertation user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 year: '1996' ... --- _id: '4426' abstract: - lang: eng text: We use linear hybrid automata to define linear approximations of the phase portraits of nonlinear hybrid systems. The approximating automata can be analyzed automatically using the symbolic model checker HyTech. We demonstrate the technique through the study of predator-prey systems, where we compute population bounds for both species. We also identify a class of nonlinear hybrid automata for which linear phase-portrait approximations can be generated automatically. acknowledgement: This research was supported in part by the ONR YIP award N00014-95-1-0520, by the NSF CAREER award CCR-9501708, by the NSF grants CCR-9200794 and CCR-9504469, by the AFOSR contract F49620-93-1-0056, and by the ARPA grant NAG2-892. alternative_title: - LNCS article_processing_charge: No author: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Howard full_name: Wong Toi, Howard last_name: Wong Toi citation: ama: 'Henzinger TA, Wong Toi H. Linear phase-portrait approximations for nonlinear hybrid systems. In: Alur R, Henzinger TA, Sontag E, eds. Hybrid Systems III: Verification and Control. Vol 1066. Springer; 1996:377-388. doi:10.1007/BFb0020961' apa: 'Henzinger, T. A., & Wong Toi, H. (1996). Linear phase-portrait approximations for nonlinear hybrid systems. In R. Alur, T. A. Henzinger, & E. Sontag (Eds.), Hybrid Systems III: Verification and Control (Vol. 1066, pp. 377–388). Springer. https://doi.org/10.1007/BFb0020961' chicago: 'Henzinger, Thomas A, and Howard Wong Toi. “Linear Phase-Portrait Approximations for Nonlinear Hybrid Systems.” In Hybrid Systems III: Verification and Control, edited by Rajeev Alur, Thomas A Henzinger, and Eduardo Sontag, 1066:377–88. Springer, 1996. https://doi.org/10.1007/BFb0020961.' ieee: 'T. A. Henzinger and H. Wong Toi, “Linear phase-portrait approximations for nonlinear hybrid systems,” in Hybrid Systems III: Verification and Control, 1996, vol. 1066, pp. 377–388.' ista: 'Henzinger TA, Wong Toi H. 1996. Linear phase-portrait approximations for nonlinear hybrid systems. Hybrid Systems III: Verification and Control. , LNCS, vol. 1066, 377–388.' mla: 'Henzinger, Thomas A., and Howard Wong Toi. “Linear Phase-Portrait Approximations for Nonlinear Hybrid Systems.” Hybrid Systems III: Verification and Control, edited by Rajeev Alur et al., vol. 1066, Springer, 1996, pp. 377–88, doi:10.1007/BFb0020961.' short: 'T.A. Henzinger, H. Wong Toi, in:, R. Alur, T.A. Henzinger, E. Sontag (Eds.), Hybrid Systems III: Verification and Control, Springer, 1996, pp. 377–388.' date_created: 2018-12-11T12:08:47Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-06T09:58:25Z day: '01' doi: 10.1007/BFb0020961 editor: - first_name: Rajeev full_name: Alur, Rajeev last_name: Alur - first_name: Thomas A full_name: Henzinger, Thomas A last_name: Henzinger - first_name: Eduardo full_name: Sontag, Eduardo last_name: Sontag extern: '1' intvolume: ' 1066' language: - iso: eng main_file_link: - url: https://link.springer.com/chapter/10.1007/BFb0020961 month: '01' oa_version: None page: 377 - 388 publication: 'Hybrid Systems III: Verification and Control' publication_identifier: isbn: - '9783540611554' publication_status: published publisher: Springer publist_id: '302' quality_controlled: '1' status: public title: Linear phase-portrait approximations for nonlinear hybrid systems type: conference user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 1066 year: '1996' ... --- _id: '4427' abstract: - lang: eng text: We model a steam-boiler control system using hybrid automata. We provide two abstracted linear models of the nonlinear behavior of the boiler. For each model, we define and verify a controller that maintains safe operation of the boiler. The less abstract model permits the design of a more efficient controller. We also demonstrate how the tool HyTech can be used to automatically synthesize control parameter constraints that guarantee safety of the boiler. acknowledgement: This research was supported in part by the ONR YIP award N00014-95-1-0520, by the NSF CAREER award CCR-9501708, by the NSF grant CCR-9504469, by the AFOSR contract F49620-93-1-0056, and by the ARPA grant NAG2-892. alternative_title: - LNCS article_processing_charge: No author: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Howard full_name: Wong Toi, Howard last_name: Wong Toi citation: ama: 'Henzinger TA, Wong Toi H. Using HyTech to synthesize control parameters for a steam boiler. In: Formal Methods for Industrial Applications: Specifying and Programming the Steam Boiler Control. Vol 1165. Springer; 1996:265-282. doi:10.1007/BFb0027241' apa: 'Henzinger, T. A., & Wong Toi, H. (1996). Using HyTech to synthesize control parameters for a steam boiler. In Formal Methods for Industrial Applications: Specifying and Programming the Steam Boiler Control (Vol. 1165, pp. 265–282). Springer. https://doi.org/10.1007/BFb0027241' chicago: 'Henzinger, Thomas A, and Howard Wong Toi. “Using HyTech to Synthesize Control Parameters for a Steam Boiler.” In Formal Methods for Industrial Applications: Specifying and Programming the Steam Boiler Control, 1165:265–82. Springer, 1996. https://doi.org/10.1007/BFb0027241.' ieee: 'T. A. Henzinger and H. Wong Toi, “Using HyTech to synthesize control parameters for a steam boiler,” in Formal Methods for Industrial Applications: Specifying and Programming the Steam Boiler Control, vol. 1165, Springer, 1996, pp. 265–282.' ista: 'Henzinger TA, Wong Toi H. 1996.Using HyTech to synthesize control parameters for a steam boiler. In: Formal Methods for Industrial Applications: Specifying and Programming the Steam Boiler Control. LNCS, vol. 1165, 265–282.' mla: 'Henzinger, Thomas A., and Howard Wong Toi. “Using HyTech to Synthesize Control Parameters for a Steam Boiler.” Formal Methods for Industrial Applications: Specifying and Programming the Steam Boiler Control, vol. 1165, Springer, 1996, pp. 265–82, doi:10.1007/BFb0027241.' short: 'T.A. Henzinger, H. Wong Toi, in:, Formal Methods for Industrial Applications: Specifying and Programming the Steam Boiler Control, Springer, 1996, pp. 265–282.' date_created: 2018-12-11T12:08:48Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-06T10:06:19Z day: '01' doi: 10.1007/BFb0027241 extern: '1' intvolume: ' 1165' language: - iso: eng main_file_link: - url: https://link.springer.com/chapter/10.1007/BFb0027241 month: '01' oa_version: None page: 265 - 282 publication: 'Formal Methods for Industrial Applications: Specifying and Programming the Steam Boiler Control' publication_identifier: isbn: - '9783540495666' publication_status: published publisher: Springer publist_id: '303' quality_controlled: '1' status: public title: Using HyTech to synthesize control parameters for a steam boiler type: book_chapter user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 1165 year: '1996' ... --- _id: '4443' abstract: - lang: eng text: "Three natural equivalence relations on the infinite state space of a hybrid automaton are language equivalence, simulation equivalence, and bisimulation equivalence. When one of these equivalence relations has a finite quotient, certain model checking and controller synthesis problems are decidable. When bounds on the number of equivalence classes are obtained, bounds on the running times of model checking and synthesis algorithms follow as corollaries.\r\nWe characterize the time-abstract versions of these equivalence relations on the state spaces of rectangular hybrid automata (RHA), in which each continuous variable is a clock with bounded drift. These automata are useful for modeling communications protocols with drifting local clocks, and for the conservative approximation of more complex hybrid systems. Of our two main results, one has positive implications for automatic verification, and the other has negative implications. On the positive side, we find that the (finite) language equivalence quotient for RHA is coarser than was previously known by a multiplicative exponential factor. On the negative side, we show that simulation equivalence for RHA is equality (which obviously has an infinite quotient).\r\nOur main positive result is established by analyzing a subclass of timed automata, called one-sided timed automata (OTA), for which the language equivalence quotient is coarser than for the class of all timed automata. An exact characterization of language equivalence for OTA requires a distinction between synchronous and asynchronous definitions of (bi)simulation: if time actions are silent, then the induced quotient for OTA is coarser than if time actions (but not their durations) are visible." acknowledgement: This research was supported in part by ONR Young Investigator award N00014-95-1-0520, by NSF CAREER award CCR-9501708, by NSF grant CCR-9504469, by Air Force Office of Scientific Research contract F49620-93-1-0056, by ARPA grant NAG2-892, and by the U.S. Army Research Office through the Mathematical Sciences Institute of Cornell University, Contract Number DAAL03-91-C-0027. alternative_title: - LNCS article_processing_charge: No author: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Peter full_name: Kopke, Peter last_name: Kopke citation: ama: 'Henzinger TA, Kopke P. State equivalences for rectangular hybrid automata. In: 7th International Conference on Concurrency Theory. Vol 1119. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 1996:530-545. doi:10.1007/3-540-61604-7_74' apa: 'Henzinger, T. A., & Kopke, P. (1996). State equivalences for rectangular hybrid automata. In 7th International Conference on Concurrency Theory (Vol. 1119, pp. 530–545). Pisa, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/3-540-61604-7_74' chicago: Henzinger, Thomas A, and Peter Kopke. “State Equivalences for Rectangular Hybrid Automata.” In 7th International Conference on Concurrency Theory, 1119:530–45. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 1996. https://doi.org/10.1007/3-540-61604-7_74. ieee: T. A. Henzinger and P. Kopke, “State equivalences for rectangular hybrid automata,” in 7th International Conference on Concurrency Theory, Pisa, Italy, 1996, vol. 1119, pp. 530–545. ista: 'Henzinger TA, Kopke P. 1996. State equivalences for rectangular hybrid automata. 7th International Conference on Concurrency Theory. CONCUR: Concurrency Theory, LNCS, vol. 1119, 530–545.' mla: Henzinger, Thomas A., and Peter Kopke. “State Equivalences for Rectangular Hybrid Automata.” 7th International Conference on Concurrency Theory, vol. 1119, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 1996, pp. 530–45, doi:10.1007/3-540-61604-7_74. short: T.A. Henzinger, P. Kopke, in:, 7th International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 1996, pp. 530–545. conference: end_date: 1996-08-29 location: Pisa, Italy name: 'CONCUR: Concurrency Theory' start_date: 1996-08-26 date_created: 2018-12-11T12:08:52Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-06T08:43:23Z day: '01' doi: 10.1007/3-540-61604-7_74 extern: '1' intvolume: ' 1119' language: - iso: eng main_file_link: - url: https://link.springer.com/chapter/10.1007/3-540-61604-7_74 month: '01' oa_version: None page: 530 - 545 publication: 7th International Conference on Concurrency Theory publication_identifier: isbn: - '9783540616047' publication_status: published publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik publist_id: '288' quality_controlled: '1' status: public title: State equivalences for rectangular hybrid automata type: conference user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 1119 year: '1996' ... --- _id: '4495' abstract: - lang: eng text: In temporal-logic model checking, we verify the correctness of a program with respect to a desired behavior by checking whether a structure that models the program satisfies a temporal-logic formula that specifies the behavior. The main practical limitation of model checking is caused by the size of the state space of the program, which grows exponentially with the number of concurrent components. This problem, known as the state-explosion problem, becomes more difficult when we consider real-time model checking, where the program and the specification involve quantitative references to time. In particular, when use timed automata to describe real-time programs and we specify timed behaviors in the logic TCTL, a real-time extension of the temporal logic CTL with clock variables, then the state space under consideration grows exponentially not only with the number of concurrent components, but also with the number of clocks and the length of the clock constraints used in the program and the specification. Two powerful methods for coping with the state-explosion problem are on-the-fly and space-efficient model checking. In on-the-fly model checking, we explore only the portion of the state space of the program whose exploration is essential for determining the satisfaction of the specification. In space-efficient model checking, we store in memory the minimal information required, preferring to spend time on reconstructing information rather than spend space on storing it. In this work we develop an automata-theoretic approach to TCTL model checking that combines both methods. We suggest, for the first time, a PSPACE on-the-fly model-checking algorithm for TCTL. acknowledgement: Supported in part by the ONR YIP award N00014-95-1-0520, by the NSF CAREER award CCR-9501708, by the NSF grant CCR-9504469, by the AFOSR contract F49620-93-1-0056, and by the ARPA grant NAG2-892. alternative_title: - LNCS article_processing_charge: No author: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Orna full_name: Kupferman, Orna last_name: Kupferman - first_name: Moshe full_name: Vardi, Moshe last_name: Vardi citation: ama: 'Henzinger TA, Kupferman O, Vardi M. A space-efficient on-the-fly algorithm for real-time model checking. In: 7th International Conference on Concurrency Theory. Vol 1119. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 1996:514-529. doi:10.1007/3-540-61604-7_73' apa: 'Henzinger, T. A., Kupferman, O., & Vardi, M. (1996). A space-efficient on-the-fly algorithm for real-time model checking. In 7th International Conference on Concurrency Theory (Vol. 1119, pp. 514–529). Pisa, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/3-540-61604-7_73' chicago: Henzinger, Thomas A, Orna Kupferman, and Moshe Vardi. “A Space-Efficient on-the-Fly Algorithm for Real-Time Model Checking.” In 7th International Conference on Concurrency Theory, 1119:514–29. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 1996. https://doi.org/10.1007/3-540-61604-7_73. ieee: T. A. Henzinger, O. Kupferman, and M. Vardi, “A space-efficient on-the-fly algorithm for real-time model checking,” in 7th International Conference on Concurrency Theory, Pisa, Italy, 1996, vol. 1119, pp. 514–529. ista: 'Henzinger TA, Kupferman O, Vardi M. 1996. A space-efficient on-the-fly algorithm for real-time model checking. 7th International Conference on Concurrency Theory. CONCUR: Concurrency Theory, LNCS, vol. 1119, 514–529.' mla: Henzinger, Thomas A., et al. “A Space-Efficient on-the-Fly Algorithm for Real-Time Model Checking.” 7th International Conference on Concurrency Theory, vol. 1119, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 1996, pp. 514–29, doi:10.1007/3-540-61604-7_73. short: T.A. Henzinger, O. Kupferman, M. Vardi, in:, 7th International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 1996, pp. 514–529. conference: end_date: 1996-08-29 location: Pisa, Italy name: 'CONCUR: Concurrency Theory' start_date: 1996-08-26 date_created: 2018-12-11T12:09:08Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-06T08:21:20Z day: '01' doi: 10.1007/3-540-61604-7_73 extern: '1' intvolume: ' 1119' language: - iso: eng main_file_link: - url: https://link.springer.com/chapter/10.1007/3-540-61604-7_73 month: '01' oa_version: None page: 514 - 529 publication: 7th International Conference on Concurrency Theory publication_identifier: isbn: - 978-3-540-70625-0 publication_status: published publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik publist_id: '233' quality_controlled: '1' status: public title: A space-efficient on-the-fly algorithm for real-time model checking type: conference user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 1119 year: '1996' ... --- _id: '4519' abstract: - lang: eng text: We summarize several recent results about hybrid automata. Our goal is to demonstrate that concepts from the theory of discrete concurrent systems can give insights into partly continuous systems, and that methods for the verification of finite-state systems can be used to analyze certain systems with uncountable state spaces article_processing_charge: No author: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 citation: ama: 'Henzinger TA. The theory of hybrid automata. In: Proceedings 11th Annual IEEE Symposium on Logic in Computer Science. IEEE; 1996:278-292. doi:10.1109/LICS.1996.561342 ' apa: 'Henzinger, T. A. (1996). The theory of hybrid automata. In Proceedings 11th Annual IEEE Symposium on Logic in Computer Science (pp. 278–292). New Brunswick, NJ, United States of America: IEEE. https://doi.org/10.1109/LICS.1996.561342 ' chicago: Henzinger, Thomas A. “The Theory of Hybrid Automata.” In Proceedings 11th Annual IEEE Symposium on Logic in Computer Science, 278–92. IEEE, 1996. https://doi.org/10.1109/LICS.1996.561342 . ieee: T. A. Henzinger, “The theory of hybrid automata,” in Proceedings 11th Annual IEEE Symposium on Logic in Computer Science, New Brunswick, NJ, United States of America, 1996, pp. 278–292. ista: 'Henzinger TA. 1996. The theory of hybrid automata. Proceedings 11th Annual IEEE Symposium on Logic in Computer Science. LICS: Logic in Computer Science, 278–292.' mla: Henzinger, Thomas A. “The Theory of Hybrid Automata.” Proceedings 11th Annual IEEE Symposium on Logic in Computer Science, IEEE, 1996, pp. 278–92, doi:10.1109/LICS.1996.561342 . short: T.A. Henzinger, in:, Proceedings 11th Annual IEEE Symposium on Logic in Computer Science, IEEE, 1996, pp. 278–292. conference: end_date: 1996-07-30 location: New Brunswick, NJ, United States of America name: 'LICS: Logic in Computer Science' start_date: 1996-07-27 date_created: 2018-12-11T12:09:16Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-06T07:56:28Z day: '01' doi: '10.1109/LICS.1996.561342 ' extern: '1' language: - iso: eng main_file_link: - url: https://ieeexplore.ieee.org/document/561342 month: '01' oa_version: None page: 278 - 292 publication: Proceedings 11th Annual IEEE Symposium on Logic in Computer Science publication_identifier: issn: - 1043-6871 publication_status: published publisher: IEEE publist_id: '213' quality_controlled: '1' status: public title: The theory of hybrid automata type: conference user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 year: '1996' ... --- _id: '4585' alternative_title: - LNCS article_processing_charge: No citation: ama: Henzinger TA, Alur R, eds. 8th International Conference on Computer Aided Verification. Vol 1102. Springer; 1996. doi:10.1007/3-540-61474-5 apa: 'Henzinger, T. A., & Alur, R. (Eds.). (1996). 8th International Conference on Computer Aided Verification (Vol. 1102). Presented at the CAV: Computer Aided Verification, New Brunswick, NJ, United States of America: Springer. https://doi.org/10.1007/3-540-61474-5' chicago: Henzinger, Thomas A, and Rajeev Alur, eds. 8th International Conference on Computer Aided Verification. Vol. 1102. Springer, 1996. https://doi.org/10.1007/3-540-61474-5. ieee: T. A. Henzinger and R. Alur, Eds., 8th International Conference on Computer Aided Verification, vol. 1102. Springer, 1996. ista: Henzinger TA, Alur R eds. 1996. 8th International Conference on Computer Aided Verification, Springer,p. mla: Henzinger, Thomas A., and Rajeev Alur, editors. 8th International Conference on Computer Aided Verification. Vol. 1102, Springer, 1996, doi:10.1007/3-540-61474-5. short: T.A. Henzinger, R. Alur, eds., 8th International Conference on Computer Aided Verification, Springer, 1996. conference: end_date: 1996-08-03 location: New Brunswick, NJ, United States of America name: 'CAV: Computer Aided Verification' start_date: 1996-07-31 date_created: 2018-12-11T12:09:36Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-06T07:38:10Z day: '01' doi: 10.1007/3-540-61474-5 editor: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000-0002-2985-7724 - first_name: Rajeev full_name: Alur, Rajeev last_name: Alur extern: '1' intvolume: ' 1102' language: - iso: eng main_file_link: - url: https://link.springer.com/book/10.1007/3-540-61474-5 month: '01' oa_version: None publication_status: published publisher: Springer publist_id: '122' status: public title: ' 8th International Conference on Computer Aided Verification' type: conference_editor user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 1102 year: '1996' ... --- _id: '4588' abstract: - lang: eng text: 'We present a formal model for concurrent systems. The model represents synchronous and asynchronous components in a uniform framework that supports compositional (assume-guarantee) and hierarchical (stepwise refinement) reasoning. While synchronous models are based on a notion of atomic computation step, and asynchronous models remove that notion by introducing stuttering, our model is based on a flexible notion of what constitutes a computation step: by applying an abstraction operator to a system, arbitrarily many consecutive steps can be collapsed into a single step. The abstraction operator, which may turn an asynchronous system into a synchronous one, allows us to describe systems at various levels of temporal detail. For describing systems at various levels of spatial detail, we use a hiding operator that may turn a synchronous system into an asynchronous one. We illustrate the model with diverse examples from synchronous circuits, asynchronous shared-memory programs, and synchronous message passing' article_processing_charge: No author: - first_name: Rajeev full_name: Alur, Rajeev last_name: Alur - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 citation: ama: 'Alur R, Henzinger TA. Reactive modules. In: Proceedings 11th Annual IEEE Symposium on Logic in Computer Science. IEEE; 1996:207-218. doi:10.1109/LICS.1996.561320' apa: 'Alur, R., & Henzinger, T. A. (1996). Reactive modules. In Proceedings 11th Annual IEEE Symposium on Logic in Computer Science (pp. 207–218). New Brunswick, NJ, USA: IEEE. https://doi.org/10.1109/LICS.1996.561320' chicago: Alur, Rajeev, and Thomas A Henzinger. “Reactive Modules.” In Proceedings 11th Annual IEEE Symposium on Logic in Computer Science, 207–18. IEEE, 1996. https://doi.org/10.1109/LICS.1996.561320. ieee: R. Alur and T. A. Henzinger, “Reactive modules,” in Proceedings 11th Annual IEEE Symposium on Logic in Computer Science, New Brunswick, NJ, USA, 1996, pp. 207–218. ista: 'Alur R, Henzinger TA. 1996. Reactive modules. Proceedings 11th Annual IEEE Symposium on Logic in Computer Science. LICS: Logic in Computer Science, 207–218.' mla: Alur, Rajeev, and Thomas A. Henzinger. “Reactive Modules.” Proceedings 11th Annual IEEE Symposium on Logic in Computer Science, IEEE, 1996, pp. 207–18, doi:10.1109/LICS.1996.561320. short: R. Alur, T.A. Henzinger, in:, Proceedings 11th Annual IEEE Symposium on Logic in Computer Science, IEEE, 1996, pp. 207–218. conference: end_date: 1996-07-30 location: New Brunswick, NJ, USA name: 'LICS: Logic in Computer Science' start_date: 1996-07-27 date_created: 2018-12-11T12:09:37Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-04T14:51:40Z day: '01' doi: 10.1109/LICS.1996.561320 extern: '1' language: - iso: eng main_file_link: - url: https://ieeexplore.ieee.org/document/561320 month: '01' oa_version: None page: 207 - 218 publication: Proceedings 11th Annual IEEE Symposium on Logic in Computer Science publication_identifier: issn: - 0018-9162 publication_status: published publisher: IEEE publist_id: '121' quality_controlled: '1' scopus_import: '1' status: public title: Reactive modules type: conference user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 year: '1996' ... --- _id: '4611' abstract: - lang: eng text: Presents a model-checking procedure and its implementation for the automatic verification of embedded systems. The system components are described as hybrid automata-communicating machines with finite control and real-valued variables that represent continuous environment parameters such as time, pressure and temperature. The system requirements are specified in a temporal logic with stop-watches, and verified by symbolic fixpoint computation. The verification procedure-implemented in the Cornell Hybrid Technology tool, HyTech-applies to hybrid automata whose continuous dynamics is governed by linear constraints on the variables and their derivatives. We illustrate the method and the tool by checking safety, liveness, time-bounded and duration requirements of digital controllers, schedulers and distributed algorithms acknowledgement: "We thank Costas Courcoubetis, Nicolas Halbwachs, Peter Kopke, Joseph Sifakis, and Howard Wong-Toi for helpful\r\ndiscussions and valuable comments. Thomas A. Henzinger's research was supported in part by the U.S. Office of Naval Research Young Investigator award N00014-95-1-0520, by the National Science Foundation CAREER award CCR-9501708, by National Science Foundation grants CCR-9200794 and CCR-9504469, by U.S. Air Force Office of Scientific Research contract F49620-93-1- 0056, and by Advanced Research Projects Agency grant NAG2-892. " article_processing_charge: No article_type: original author: - first_name: Rajeev full_name: Alur, Rajeev last_name: Alur - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Pei full_name: Ho, Pei last_name: Ho citation: ama: Alur R, Henzinger TA, Ho P. Automatic symbolic verification of embedded systems. IEEE Transactions on Software Engineering. 1996;22(3):181-201. doi:10.1109/32.489079 apa: Alur, R., Henzinger, T. A., & Ho, P. (1996). Automatic symbolic verification of embedded systems. IEEE Transactions on Software Engineering. IEEE. https://doi.org/10.1109/32.489079 chicago: Alur, Rajeev, Thomas A Henzinger, and Pei Ho. “Automatic Symbolic Verification of Embedded Systems.” IEEE Transactions on Software Engineering. IEEE, 1996. https://doi.org/10.1109/32.489079. ieee: R. Alur, T. A. Henzinger, and P. Ho, “Automatic symbolic verification of embedded systems,” IEEE Transactions on Software Engineering, vol. 22, no. 3. IEEE, pp. 181–201, 1996. ista: Alur R, Henzinger TA, Ho P. 1996. Automatic symbolic verification of embedded systems. IEEE Transactions on Software Engineering. 22(3), 181–201. mla: Alur, Rajeev, et al. “Automatic Symbolic Verification of Embedded Systems.” IEEE Transactions on Software Engineering, vol. 22, no. 3, IEEE, 1996, pp. 181–201, doi:10.1109/32.489079. short: R. Alur, T.A. Henzinger, P. Ho, IEEE Transactions on Software Engineering 22 (1996) 181–201. date_created: 2018-12-11T12:09:45Z date_published: 1996-03-01T00:00:00Z date_updated: 2022-07-04T12:47:05Z day: '01' doi: 10.1109/32.489079 extern: '1' intvolume: ' 22' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: https://ecommons.cornell.edu/handle/1813/7170 month: '03' oa: 1 oa_version: Published Version page: 181 - 201 publication: IEEE Transactions on Software Engineering publication_identifier: issn: - 0018-9162 publication_status: published publisher: IEEE publist_id: '96' quality_controlled: '1' scopus_import: '1' status: public title: Automatic symbolic verification of embedded systems type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 22 year: '1996' ... --- _id: '4610' abstract: - lang: eng text: The most natural, compositional, way of modeling real-time systems uses a dense domain for time. The satisfiability of timing constraints that are capable of expressing punctuality in this model, however, is known to be undecidable. We introduce a temporal language that can constrain the time difference between events only with finite, yet arbitrary, precision and show the resulting logic to be EXPSPACE-complete. This result allows us to develop an algorithm for the verification of timing properties of real-time systems with a dense semantics. acknowledgement: 'We wish to thank an anonymous referee for pointing out the PSPACE-fragment of Section 4.5. ' article_processing_charge: No article_type: original author: - first_name: Rajeev full_name: Alur, Rajeev last_name: Alur - first_name: Tomás full_name: Feder, Tomás last_name: Feder - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 citation: ama: Alur R, Feder T, Henzinger TA. The benefits of relaxing punctuality. Journal of the ACM. 1996;43(1):116-146. doi:10.1145/227595.227602 apa: Alur, R., Feder, T., & Henzinger, T. A. (1996). The benefits of relaxing punctuality. Journal of the ACM. ACM. https://doi.org/10.1145/227595.227602 chicago: Alur, Rajeev, Tomás Feder, and Thomas A Henzinger. “The Benefits of Relaxing Punctuality.” Journal of the ACM. ACM, 1996. https://doi.org/10.1145/227595.227602. ieee: R. Alur, T. Feder, and T. A. Henzinger, “The benefits of relaxing punctuality,” Journal of the ACM, vol. 43, no. 1. ACM, pp. 116–146, 1996. ista: Alur R, Feder T, Henzinger TA. 1996. The benefits of relaxing punctuality. Journal of the ACM. 43(1), 116–146. mla: Alur, Rajeev, et al. “The Benefits of Relaxing Punctuality.” Journal of the ACM, vol. 43, no. 1, ACM, 1996, pp. 116–46, doi:10.1145/227595.227602. short: R. Alur, T. Feder, T.A. Henzinger, Journal of the ACM 43 (1996) 116–146. date_created: 2018-12-11T12:09:44Z date_published: 1996-01-01T00:00:00Z date_updated: 2022-07-04T12:38:01Z day: '01' doi: 10.1145/227595.227602 extern: '1' intvolume: ' 43' issue: '1' language: - iso: eng main_file_link: - url: https://dl.acm.org/doi/10.1145/227595.227602 month: '01' oa_version: None page: 116 - 146 publication: Journal of the ACM publication_identifier: issn: - 0004-5411 publication_status: published publisher: ACM publist_id: '95' quality_controlled: '1' scopus_import: '1' status: public title: The benefits of relaxing punctuality type: journal_article user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17 volume: 43 year: '1996' ... --- _id: '4612' alternative_title: - LNCS article_processing_charge: No citation: ama: 'Alur R, Henzinger TA, Sontag ED, eds. Hybrid Systems III: Verification and Control. Vol 1066. Berlin ; Heidelberg: Springer; 1996. doi:10.1007/BFb0020931' apa: 'Alur, R., Henzinger, T. A., & Sontag, E. D. (Eds.). (1996). Hybrid Systems III: Verification and Control (Vol. 1066). Berlin ; Heidelberg: Springer. https://doi.org/10.1007/BFb0020931' chicago: 'Alur, Rajeev, Thomas A Henzinger, and Eduardo D Sontag, eds. Hybrid Systems III: Verification and Control. Vol. 1066. Lecture Notes in Computer Science. Berlin ; Heidelberg: Springer, 1996. https://doi.org/10.1007/BFb0020931.' ieee: 'R. Alur, T. A. Henzinger, and E. D. Sontag, Eds., Hybrid Systems III: Verification and Control, vol. 1066. Berlin ; Heidelberg: Springer, 1996.' ista: 'Alur R, Henzinger TA, Sontag ED eds. 1996. Hybrid Systems III: Verification and Control, Berlin ; Heidelberg: Springer, IX, 619p.' mla: 'Alur, Rajeev, et al., editors. Hybrid Systems III: Verification and Control. Vol. 1066, Springer, 1996, doi:10.1007/BFb0020931.' short: 'R. Alur, T.A. Henzinger, E.D. Sontag, eds., Hybrid Systems III: Verification and Control, Springer, Berlin ; Heidelberg, 1996.' date_created: 2018-12-11T12:09:45Z date_published: 1996-01-01T00:00:00Z date_updated: 2021-12-22T13:57:33Z day: '01' doi: 10.1007/BFb0020931 editor: - first_name: Rajeev full_name: Alur, Rajeev last_name: Alur - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Eduardo D full_name: Sontag, Eduardo D last_name: Sontag extern: '1' intvolume: ' 1066' language: - iso: eng month: '01' oa_version: None page: IX, 619 place: Berlin ; Heidelberg publication_identifier: isbn: - 978-3-540-61155-4 issn: - 0302-9743 publication_status: published publisher: Springer publist_id: '97' quality_controlled: '1' series_title: Lecture Notes in Computer Science status: public title: 'Hybrid Systems III: Verification and Control' type: book_editor user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 1066 year: '1996' ... --- _id: '6161' abstract: - lang: eng text: 'The tra-1 gene is a terminal regulator of somatic sex in Caenorhabditis elegans: high tra-1 activity elicits female development, low tra-1 activity elicits male development. To investigate the function and evolution of tra- 1, we examined the tra-1 gene from the closely related nematode C. briggsae. Ce-tra-1 and Cb-tra-1 are unusually divergent. Each gene generates two transcripts, but only one of these is present in both species. This common transcript encodes TRA-1A, which shows only 44% amino acid identity between the species, a figure much lower than that for previously compared genes. A Cb-tra-1 transgene rescues many tissues of tra-1(null) mutants of C. elegans but not the somatic gonad or germ line. This transgene also causes nongonadal feminization of XO animals, indicating incorrect sexual regulation. Alignment of Ce-TRA-1A and Cb-TRA-1A defined several conserved regions likely to be important for tra-1 function. The phenotype differences between Ce-tra- 1(null) mutants rescued by Cb-tra-1 transgenes and wild-type C. elegans indicate significant divergence of regulatory regions. These molecular and functional studies suggest that evolution of sex determination in nematodes is rapid and genetically complex.' author: - first_name: Mario full_name: de Bono, Mario id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87 last_name: de Bono orcid: 0000-0001-8347-0443 - first_name: J. full_name: Hodgkin, J. last_name: Hodgkin citation: ama: 'de Bono M, Hodgkin J. Evolution of sex determination in Caenorhabditis: Unusually high divergence of tra-1 and its functional consequences. Genetics. 1996;144(2):587-595.' apa: 'de Bono, M., & Hodgkin, J. (1996). Evolution of sex determination in Caenorhabditis: Unusually high divergence of tra-1 and its functional consequences. Genetics. Genetics Society of America.' chicago: 'Bono, Mario de, and J. Hodgkin. “Evolution of Sex Determination in Caenorhabditis: Unusually High Divergence of Tra-1 and Its Functional Consequences.” Genetics. Genetics Society of America, 1996.' ieee: 'M. de Bono and J. Hodgkin, “Evolution of sex determination in Caenorhabditis: Unusually high divergence of tra-1 and its functional consequences,” Genetics, vol. 144, no. 2. Genetics Society of America, pp. 587–595, 1996.' ista: 'de Bono M, Hodgkin J. 1996. Evolution of sex determination in Caenorhabditis: Unusually high divergence of tra-1 and its functional consequences. Genetics. 144(2), 587–595.' mla: 'de Bono, Mario, and J. Hodgkin. “Evolution of Sex Determination in Caenorhabditis: Unusually High Divergence of Tra-1 and Its Functional Consequences.” Genetics, vol. 144, no. 2, Genetics Society of America, 1996, pp. 587–95.' short: M. de Bono, J. Hodgkin, Genetics 144 (1996) 587–595. date_created: 2019-03-21T11:50:37Z date_published: 1996-10-01T00:00:00Z date_updated: 2021-01-12T08:06:28Z day: '01' extern: '1' external_id: pmid: - '8889522' intvolume: ' 144' issue: '2' keyword: - amino acid sequence - article - caenorhabditis elegans - evolution - genetic variability - nonhuman - priority journal - sex determination - Amino Acid Sequence - Animals - Animals - Genetically Modified - Base Sequence - Caenorhabditis - Caenorhabditis elegans - Caenorhabditis elegans Proteins - DNA - Helminth - DNA-Binding Proteins - Evolution - Molecular - Female - Helminth Proteins - Membrane Proteins - Molecular Sequence Data - Mutagenesis - RNA - Messenger - Sequence Homology - Amino Acid - Sex Determination (Analysis) - Transcription Factors - Transgenes - Turner Syndrome - Animalia - Caenorhabditis - Caenorhabditis briggsae - Caenorhabditis elegans - Nematoda language: - iso: eng main_file_link: - open_access: '1' url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1207552/ month: '10' oa: 1 oa_version: Published Version page: 587-595 pmid: 1 publication: Genetics publication_identifier: issn: - '00166731' publication_status: published publisher: Genetics Society of America quality_controlled: '1' status: public title: 'Evolution of sex determination in Caenorhabditis: Unusually high divergence of tra-1 and its functional consequences' type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 144 year: '1996' ...