---
_id: '11120'
abstract:
- lang: eng
text: The nuclear envelope (NE) is a highly specialized membrane that delineates
the eukaryotic cell nucleus. It is composed of the inner and outer nuclear membranes,
nuclear pore complexes (NPCs) and, in metazoa, the lamina. The NE not only regulates
the trafficking of macromolecules between nucleoplasm and cytosol but also provides
anchoring sites for chromatin and the cytoskeleton. Through these interactions,
the NE helps position the nucleus within the cell and chromosomes within the nucleus,
thereby regulating the expression of certain genes. The NE is not static, rather
it is continuously remodeled during cell division. The most dramatic example of
NE reorganization occurs during mitosis in metazoa when the NE undergoes a complete
cycle of disassembly and reformation. Despite the importance of the NE for eukaryotic
cell life, relatively little is known about its biogenesis or many of its functions.
We thus are far from understanding the molecular etiology of a diverse group of
NE-associated diseases.
article_processing_charge: No
article_type: original
author:
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
- first_name: Tobias C.
full_name: Walther, Tobias C.
last_name: Walther
- first_name: Iain W.
full_name: Mattaj, Iain W.
last_name: Mattaj
citation:
ama: 'Hetzer M, Walther TC, Mattaj IW. Pushing the envelope: Structure, function,
and dynamics of the nuclear periphery. Annual Review of Cell and Developmental
Biology. 2005;21:347-380. doi:10.1146/annurev.cellbio.21.090704.151152'
apa: 'Hetzer, M., Walther, T. C., & Mattaj, I. W. (2005). Pushing the envelope:
Structure, function, and dynamics of the nuclear periphery. Annual Review of
Cell and Developmental Biology. Annual Reviews. https://doi.org/10.1146/annurev.cellbio.21.090704.151152'
chicago: 'Hetzer, Martin, Tobias C. Walther, and Iain W. Mattaj. “Pushing the Envelope:
Structure, Function, and Dynamics of the Nuclear Periphery.” Annual Review
of Cell and Developmental Biology. Annual Reviews, 2005. https://doi.org/10.1146/annurev.cellbio.21.090704.151152.'
ieee: 'M. Hetzer, T. C. Walther, and I. W. Mattaj, “Pushing the envelope: Structure,
function, and dynamics of the nuclear periphery,” Annual Review of Cell and
Developmental Biology, vol. 21. Annual Reviews, pp. 347–380, 2005.'
ista: 'Hetzer M, Walther TC, Mattaj IW. 2005. Pushing the envelope: Structure, function,
and dynamics of the nuclear periphery. Annual Review of Cell and Developmental
Biology. 21, 347–380.'
mla: 'Hetzer, Martin, et al. “Pushing the Envelope: Structure, Function, and Dynamics
of the Nuclear Periphery.” Annual Review of Cell and Developmental Biology,
vol. 21, Annual Reviews, 2005, pp. 347–80, doi:10.1146/annurev.cellbio.21.090704.151152.'
short: M. Hetzer, T.C. Walther, I.W. Mattaj, Annual Review of Cell and Developmental
Biology 21 (2005) 347–380.
date_created: 2022-04-07T07:56:52Z
date_published: 2005-11-10T00:00:00Z
date_updated: 2022-07-18T08:57:34Z
day: '10'
doi: 10.1146/annurev.cellbio.21.090704.151152
extern: '1'
external_id:
pmid:
- '16212499'
intvolume: ' 21'
keyword:
- Cell Biology
- Developmental Biology
language:
- iso: eng
month: '11'
oa_version: None
page: 347-380
pmid: 1
publication: Annual Review of Cell and Developmental Biology
publication_identifier:
eissn:
- 1530-8995
issn:
- 1081-0706
publication_status: published
publisher: Annual Reviews
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Pushing the envelope: Structure, function, and dynamics of the nuclear periphery'
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 21
year: '2005'
...
---
_id: '11698'
abstract:
- lang: eng
text: We give a short survey of the use of hyperlink analysis in web search engine
ranking and sketch other applications of hyperlink analysis in the web space.
article_processing_charge: No
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
citation:
ama: 'Henzinger MH. Hyperlink analysis on the world wide web. In: Proceedings
of the 16th ACM Conference on Hypertext and Hypermedia. Association for Computing
Machinery; 2005:1-3. doi:10.1145/1083356.1083357'
apa: 'Henzinger, M. H. (2005). Hyperlink analysis on the world wide web. In Proceedings
of the 16th ACM conference on Hypertext and hypermedia (pp. 1–3). Salzburg,
Austria: Association for Computing Machinery. https://doi.org/10.1145/1083356.1083357'
chicago: Henzinger, Monika H. “Hyperlink Analysis on the World Wide Web.” In Proceedings
of the 16th ACM Conference on Hypertext and Hypermedia, 1–3. Association for
Computing Machinery, 2005. https://doi.org/10.1145/1083356.1083357.
ieee: M. H. Henzinger, “Hyperlink analysis on the world wide web,” in Proceedings
of the 16th ACM conference on Hypertext and hypermedia, Salzburg, Austria,
2005, pp. 1–3.
ista: 'Henzinger MH. 2005. Hyperlink analysis on the world wide web. Proceedings
of the 16th ACM conference on Hypertext and hypermedia. HYPERTEXT: Conference
on Hypertext and Hypermedia, 1–3.'
mla: Henzinger, Monika H. “Hyperlink Analysis on the World Wide Web.” Proceedings
of the 16th ACM Conference on Hypertext and Hypermedia, Association for Computing
Machinery, 2005, pp. 1–3, doi:10.1145/1083356.1083357.
short: M.H. Henzinger, in:, Proceedings of the 16th ACM Conference on Hypertext
and Hypermedia, Association for Computing Machinery, 2005, pp. 1–3.
conference:
end_date: 2005-09-09
location: Salzburg, Austria
name: 'HYPERTEXT: Conference on Hypertext and Hypermedia'
start_date: 2005-09-06
date_created: 2022-07-29T10:47:23Z
date_published: 2005-09-06T00:00:00Z
date_updated: 2023-02-09T11:54:40Z
day: '06'
doi: 10.1145/1083356.1083357
extern: '1'
keyword:
- Hyperlink Analysis
- World Wide Web
language:
- iso: eng
month: '09'
oa_version: None
page: 1-3
publication: Proceedings of the 16th ACM conference on Hypertext and hypermedia
publication_identifier:
isbn:
- '9781595931689'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hyperlink analysis on the world wide web
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2005'
...
---
_id: '11904'
abstract:
- lang: eng
text: "Many daily activities present information in the form of a stream of text,
and often people can benefit from additional information on the topic discussed.
TV broadcast news can be treated as one such stream of text; in this paper we
discuss finding news articles on the web that are relevant to news currently being
broadcast.\r\n\r\nWe evaluated a variety of algorithms for this problem, looking
at the impact of inverse document frequency, stemming, compounds, history, and
query length on the relevance and coverage of news articles returned in real time
during a broadcast. We also evaluated several postprocessing techniques for improving
the precision, including reranking using additional terms, reranking by document
similarity, and filtering on document similarity. For the best algorithm, 84–91%
of the articles found were relevant, with at least 64% of the articles being on
the exact topic of the broadcast. In addition, a relevant article was found for
at least 70% of the topics."
article_processing_charge: No
article_type: original
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Bay-Wei
full_name: Chang, Bay-Wei
last_name: Chang
- first_name: Brian
full_name: Milch, Brian
last_name: Milch
- first_name: Sergey
full_name: Brin, Sergey
last_name: Brin
citation:
ama: Henzinger MH, Chang B-W, Milch B, Brin S. Query-free news search. World
Wide Web. 2005;8(2):101-126. doi:10.1007/s11280-004-4870-6
apa: Henzinger, M. H., Chang, B.-W., Milch, B., & Brin, S. (2005). Query-free
news search. World Wide Web. Springer Nature. https://doi.org/10.1007/s11280-004-4870-6
chicago: Henzinger, Monika H, Bay-Wei Chang, Brian Milch, and Sergey Brin. “Query-Free
News Search.” World Wide Web. Springer Nature, 2005. https://doi.org/10.1007/s11280-004-4870-6.
ieee: M. H. Henzinger, B.-W. Chang, B. Milch, and S. Brin, “Query-free news search,”
World Wide Web, vol. 8, no. 2. Springer Nature, pp. 101–126, 2005.
ista: Henzinger MH, Chang B-W, Milch B, Brin S. 2005. Query-free news search. World
Wide Web. 8(2), 101–126.
mla: Henzinger, Monika H., et al. “Query-Free News Search.” World Wide Web,
vol. 8, no. 2, Springer Nature, 2005, pp. 101–26, doi:10.1007/s11280-004-4870-6.
short: M.H. Henzinger, B.-W. Chang, B. Milch, S. Brin, World Wide Web 8 (2005) 101–126.
date_created: 2022-08-17T11:16:56Z
date_published: 2005-06-01T00:00:00Z
date_updated: 2023-02-21T16:30:56Z
day: '01'
doi: 10.1007/s11280-004-4870-6
extern: '1'
intvolume: ' 8'
issue: '2'
language:
- iso: eng
month: '06'
oa_version: None
page: 101-126
publication: World Wide Web
publication_identifier:
eissn:
- 1573-1413
issn:
- 1386-145X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '11860'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Query-free news search
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2005'
...
---
_id: '11763'
abstract:
- lang: eng
text: "We present the first polylog-competitive online algorithm for the general
multicast admission control and routing problem in the throughput model. The ratio
of the number of requests accepted by the optimum offline algorithm to the expected
number of requests accepted by our algorithm is O((log n + log log M)(log n +
log M) log n), where M is the number of multicast groups and n is the number of
nodes in the graph. We show that this is close to optimum by presenting an\r\nΩ(log
n log M) lower bound on this ratio for any randomized online algorithm against
an oblivious adversary, when M is much larger than the link capacities. Our lower
bound applies even in the restricted case where the link capacities are much larger
than bandwidth requested by a single multicast. We also present a simple proof
showing that it is impossible to be competitive against an adaptive online adversary.\r\nAs
in the previous online routing algorithms, our algorithm uses edge-costs when
deciding on which is the best path to use. In contrast to the previous competitive
algorithms in the throughput model, our cost is not a direct function of the edge
load. The new cost definition allows us to decouple the effects of routing and
admission decisions of different multicast groups."
article_processing_charge: No
article_type: original
author:
- first_name: Ashish
full_name: Goel, Ashish
last_name: Goel
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Serge
full_name: Plotkin, Serge
last_name: Plotkin
citation:
ama: Goel A, Henzinger MH, Plotkin S. An online throughput-competitive algorithm
for multicast routing and admission control. Journal of Algorithms. 2005;55(1):1-20.
doi:10.1016/j.jalgor.2004.11.001
apa: Goel, A., Henzinger, M. H., & Plotkin, S. (2005). An online throughput-competitive
algorithm for multicast routing and admission control. Journal of Algorithms.
Elsevier. https://doi.org/10.1016/j.jalgor.2004.11.001
chicago: Goel, Ashish, Monika H Henzinger, and Serge Plotkin. “An Online Throughput-Competitive
Algorithm for Multicast Routing and Admission Control.” Journal of Algorithms.
Elsevier, 2005. https://doi.org/10.1016/j.jalgor.2004.11.001.
ieee: A. Goel, M. H. Henzinger, and S. Plotkin, “An online throughput-competitive
algorithm for multicast routing and admission control,” Journal of Algorithms,
vol. 55, no. 1. Elsevier, pp. 1–20, 2005.
ista: Goel A, Henzinger MH, Plotkin S. 2005. An online throughput-competitive algorithm
for multicast routing and admission control. Journal of Algorithms. 55(1), 1–20.
mla: Goel, Ashish, et al. “An Online Throughput-Competitive Algorithm for Multicast
Routing and Admission Control.” Journal of Algorithms, vol. 55, no. 1,
Elsevier, 2005, pp. 1–20, doi:10.1016/j.jalgor.2004.11.001.
short: A. Goel, M.H. Henzinger, S. Plotkin, Journal of Algorithms 55 (2005) 1–20.
date_created: 2022-08-08T12:03:00Z
date_published: 2005-04-01T00:00:00Z
date_updated: 2023-02-21T16:33:22Z
day: '01'
doi: 10.1016/j.jalgor.2004.11.001
extern: '1'
intvolume: ' 55'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.jalgor.2004.11.001
month: '04'
oa: 1
oa_version: Published Version
page: 1-20
publication: Journal of Algorithms
publication_identifier:
issn:
- 0196-6774
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
record:
- id: '11926'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: An online throughput-competitive algorithm for multicast routing and admission
control
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 55
year: '2005'
...
---
_id: '12657'
abstract:
- lang: eng
text: An enhanced temperature-index glacier melt model, incorporating incoming shortwave
radiation and albedo, is presented. The model is an attempt to combine the high
temporal resolution and accuracy of physically based melt models with the lower
data requirements and computational simplicity of empirical melt models, represented
by the ‘degree-day’ method and its variants. The model is run with both measured
and modelled radiation data, to test its applicability to glaciers with differing
data availability. Five automatic weather stations were established on Haut Glacier
d’Arolla, Switzerland, between May and September 2001. Reference surface melt
rates were calculated using a physically based energy-balance melt model. The
performance of the enhanced temperature-index model was tested at each of the
four validation stations by comparing predicted hourly melt rates with reference
melt rates. Predictions made with three other temperature-index models were evaluated
in the same way for comparison. The enhanced temperature-index model offers significant
improvements over the other temperature-index models, and accounts for 90–95%
of the variation in the reference melt rate. The improvement is lower, but still
significant, when the model is forced by modelled shortwave radiation data, thus
offering a better alternative to existing models that require only temperature
data input.
article_processing_charge: No
article_type: original
author:
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
- first_name: Ben
full_name: Brock, Ben
last_name: Brock
- first_name: Ulrich
full_name: Strasser, Ulrich
last_name: Strasser
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
- first_name: Martin
full_name: Funk, Martin
last_name: Funk
- first_name: Javier
full_name: Corripio, Javier
last_name: Corripio
citation:
ama: 'Pellicciotti F, Brock B, Strasser U, Burlando P, Funk M, Corripio J. An enhanced
temperature-index glacier melt model including the shortwave radiation balance:
Development and testing for Haut Glacier d’Arolla, Switzerland. Journal of
Glaciology. 2005;51(175):573-587. doi:10.3189/172756505781829124'
apa: 'Pellicciotti, F., Brock, B., Strasser, U., Burlando, P., Funk, M., & Corripio,
J. (2005). An enhanced temperature-index glacier melt model including the shortwave
radiation balance: Development and testing for Haut Glacier d’Arolla, Switzerland.
Journal of Glaciology. Cambridge University Press. https://doi.org/10.3189/172756505781829124'
chicago: 'Pellicciotti, Francesca, Ben Brock, Ulrich Strasser, Paolo Burlando, Martin
Funk, and Javier Corripio. “An Enhanced Temperature-Index Glacier Melt Model Including
the Shortwave Radiation Balance: Development and Testing for Haut Glacier d’Arolla,
Switzerland.” Journal of Glaciology. Cambridge University Press, 2005.
https://doi.org/10.3189/172756505781829124.'
ieee: 'F. Pellicciotti, B. Brock, U. Strasser, P. Burlando, M. Funk, and J. Corripio,
“An enhanced temperature-index glacier melt model including the shortwave radiation
balance: Development and testing for Haut Glacier d’Arolla, Switzerland,” Journal
of Glaciology, vol. 51, no. 175. Cambridge University Press, pp. 573–587,
2005.'
ista: 'Pellicciotti F, Brock B, Strasser U, Burlando P, Funk M, Corripio J. 2005.
An enhanced temperature-index glacier melt model including the shortwave radiation
balance: Development and testing for Haut Glacier d’Arolla, Switzerland. Journal
of Glaciology. 51(175), 573–587.'
mla: 'Pellicciotti, Francesca, et al. “An Enhanced Temperature-Index Glacier Melt
Model Including the Shortwave Radiation Balance: Development and Testing for Haut
Glacier d’Arolla, Switzerland.” Journal of Glaciology, vol. 51, no. 175,
Cambridge University Press, 2005, pp. 573–87, doi:10.3189/172756505781829124.'
short: F. Pellicciotti, B. Brock, U. Strasser, P. Burlando, M. Funk, J. Corripio,
Journal of Glaciology 51 (2005) 573–587.
date_created: 2023-02-20T08:18:51Z
date_published: 2005-10-19T00:00:00Z
date_updated: 2023-02-20T08:45:37Z
day: '19'
doi: 10.3189/172756505781829124
extern: '1'
intvolume: ' 51'
issue: '175'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.3189/172756505781829124
month: '10'
oa: 1
oa_version: Published Version
page: 573-587
publication: Journal of Glaciology
publication_identifier:
eissn:
- 1727-5652
issn:
- 0022-1430
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'An enhanced temperature-index glacier melt model including the shortwave radiation
balance: Development and testing for Haut Glacier d’Arolla, Switzerland'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 51
year: '2005'
...
---
_id: '1298'
abstract:
- lang: eng
text: Genetically encoded fluorescent probes of neural activity represent new promising
tools for systems neuroscience. Here, we present a comparative in vivo analysis
of 10 different genetically encoded calcium indicators, as well as the pH-sensitive
synapto-pHluorin. We analyzed their fluorescence changes in presynaptic boutons
of the Drosophila larval neuromuscular junction. Robust neural activity did not
result in any or noteworthy fluorescence changes when Flash-Pericam, Camgaroo-1,
and Camgaroo-2 were expressed. However, calculated on the raw data, fractional
fluorescence changes up to 18% were reported by synapto-pHluorin, Yellow Cameleon
2.0, 2.3, and 3.3, Inverse-Pericam, GCaMP1.3, GCaMP1.6, and the troponin C-based
calcium sensor TN-L15. The response characteristics of all of these indicators
differed considerably from each other, with GCaMP1.6 reporting high rates of neural
activity with the largest and fastest fluorescence changes. However, GCaMP1.6
suffered from photobleaching, whereas the fluorescence signals of the double-chromophore
indicators were in general smaller but more photostable and reproducible, with
TN-L15 showing the fastest rise of the signals at lower activity rates. We show
for GCaMP1.3 and YC3.3 that an expanded range of neural activity evoked fairly
linear fluorescence changes and a corresponding linear increase in the signal-to-noise
ratio (SNR). The expression level of the indicator biased the signal kinetics
and SNR, whereas the signal amplitude was independent. The presented data will
be useful for in vivo experiments with respect to the selection of an appropriate
indicator, as well as for the correct interpretation of the optical signals.
acknowledgement: This work was supported by the Max-Planck-Society.
author:
- first_name: Dierk
full_name: Reiff, Dierk F
last_name: Reiff
- first_name: Alexandra
full_name: Ihring, Alexandra
last_name: Ihring
- first_name: Giovanna
full_name: Guerrero, Giovanna
last_name: Guerrero
- first_name: Ehud
full_name: Isacoff, Ehud Y
last_name: Isacoff
- first_name: Maximilian A
full_name: Maximilian Jösch
id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
last_name: Jösch
orcid: 0000-0002-3937-1330
- first_name: Junichi
full_name: Nakai, Junichi
last_name: Nakai
- first_name: Alexander
full_name: Borst, Alexander
last_name: Borst
citation:
ama: Reiff D, Ihring A, Guerrero G, et al. In vivo performance of genetically encoded
indicators of neural activity in flies. Journal of Neuroscience. 2005;25(19):4766-4778.
doi:10.1523/JNEUROSCI.4900-04.2005
apa: Reiff, D., Ihring, A., Guerrero, G., Isacoff, E., Jösch, M. A., Nakai, J.,
& Borst, A. (2005). In vivo performance of genetically encoded indicators
of neural activity in flies. Journal of Neuroscience. Society for Neuroscience.
https://doi.org/10.1523/JNEUROSCI.4900-04.2005
chicago: Reiff, Dierk, Alexandra Ihring, Giovanna Guerrero, Ehud Isacoff, Maximilian
A Jösch, Junichi Nakai, and Alexander Borst. “In Vivo Performance of Genetically
Encoded Indicators of Neural Activity in Flies.” Journal of Neuroscience.
Society for Neuroscience, 2005. https://doi.org/10.1523/JNEUROSCI.4900-04.2005.
ieee: D. Reiff et al., “In vivo performance of genetically encoded indicators
of neural activity in flies,” Journal of Neuroscience, vol. 25, no. 19.
Society for Neuroscience, pp. 4766–4778, 2005.
ista: Reiff D, Ihring A, Guerrero G, Isacoff E, Jösch MA, Nakai J, Borst A. 2005.
In vivo performance of genetically encoded indicators of neural activity in flies.
Journal of Neuroscience. 25(19), 4766–4778.
mla: Reiff, Dierk, et al. “In Vivo Performance of Genetically Encoded Indicators
of Neural Activity in Flies.” Journal of Neuroscience, vol. 25, no. 19,
Society for Neuroscience, 2005, pp. 4766–78, doi:10.1523/JNEUROSCI.4900-04.2005.
short: D. Reiff, A. Ihring, G. Guerrero, E. Isacoff, M.A. Jösch, J. Nakai, A. Borst,
Journal of Neuroscience 25 (2005) 4766–4778.
date_created: 2018-12-11T11:51:13Z
date_published: 2005-03-11T00:00:00Z
date_updated: 2021-01-12T06:49:42Z
day: '11'
doi: 10.1523/JNEUROSCI.4900-04.2005
extern: 1
intvolume: ' 25'
issue: '19'
month: '03'
page: 4766 - 4778
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '5975'
quality_controlled: 0
status: public
title: In vivo performance of genetically encoded indicators of neural activity in
flies
type: journal_article
volume: 25
year: '2005'
...
---
_id: '1447'
abstract:
- lang: eng
text: Building on a recent paper [8], here we argue that the combinatorics of matroids
are intimately related to the geometry and topology of toric hyperkähler varieties.
We show that just like toric varieties occupy a central role in Stanley’s proof
for the necessity of McMullen’s conjecture (or g-inequalities) about the classification
of face vectors of simplicial polytopes, the topology of toric hyperkähler varieties
leads to new restrictions on face vectors of matroid complexes. Namely in this
paper we will give two proofs that the injectivity part of the Hard Lefschetz
theorem survives for toric hyperkähler varieties. We explain how this implies
the g-inequalities for rationally representable matroids. We show how the geometrical
intuition in the first proof, coupled with results of Chari [3], leads to a proof
of the g-inequalities for general matroid complexes, which is a recent result
of Swartz [20]. The geometrical idea in the second proof will show that a pure
O-sequence should satisfy the g-inequalities, thus showing that our result is
in fact a consequence of a long-standing conjecture of Stanley.
acknowledgement: Financial support wa s provided by a Miller Research Fellowship at
the University of California at Berkeley , and by NSF grants DMS- 0072675 and DMS-0305505.
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
citation:
ama: Hausel T. Quaternionic geometry of matroids. Open Mathematics. 2005;3(1):26-38.
doi:10.2478/BF02475653
apa: Hausel, T. (2005). Quaternionic geometry of matroids. Open Mathematics.
Central European Science Journals. https://doi.org/10.2478/BF02475653
chicago: Hausel, Tamás. “Quaternionic Geometry of Matroids.” Open Mathematics.
Central European Science Journals, 2005. https://doi.org/10.2478/BF02475653.
ieee: T. Hausel, “Quaternionic geometry of matroids,” Open Mathematics, vol.
3, no. 1. Central European Science Journals, pp. 26–38, 2005.
ista: Hausel T. 2005. Quaternionic geometry of matroids. Open Mathematics. 3(1),
26–38.
mla: Hausel, Tamás. “Quaternionic Geometry of Matroids.” Open Mathematics,
vol. 3, no. 1, Central European Science Journals, 2005, pp. 26–38, doi:10.2478/BF02475653.
short: T. Hausel, Open Mathematics 3 (2005) 26–38.
date_created: 2018-12-11T11:52:05Z
date_published: 2005-03-01T00:00:00Z
date_updated: 2021-01-12T06:50:49Z
day: '01'
doi: 10.2478/BF02475653
extern: 1
intvolume: ' 3'
issue: '1'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math/0308146
month: '03'
oa: 1
page: 26 - 38
publication: Open Mathematics
publication_status: published
publisher: Central European Science Journals
publist_id: '5749'
quality_controlled: 0
status: public
title: Quaternionic geometry of matroids
type: journal_article
volume: 3
year: '2005'
...
---
_id: '1444'
abstract:
- lang: eng
text: The paper surveys the mirror symmetry conjectures of Hausel-Thaddeus and Hausel-Rodriguez-Villegas
concerning the equality of certain Hodge numbers of SL(n, ℂ) vs. PGL(n, ℂ) flat
connections and character varieties for curves, respectively. Several new results
and conjectures and their relations to works of Hitchin, Gothen, Garsia-Haiman
and Earl-Kirwan are explained. These use the representation theory of finite groups
of Lie-type via the arithmetic of character varieties and lead to an unexpected
conjecture for a Hard Lefschetz theorem for their cohomology.
alternative_title:
- Progress in Mathematics
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
citation:
ama: 'Hausel T. Mirror symmetry and Langlands duality in the non-Abelian Hodge theory
of a curve. In: Geometric Methods in Algebra and Number Theory. Vol 235.
Springer; 2005:193-217. doi:10.1007/0-8176-4417-2_9'
apa: Hausel, T. (2005). Mirror symmetry and Langlands duality in the non-Abelian
Hodge theory of a curve. In Geometric Methods in Algebra and Number Theory
(Vol. 235, pp. 193–217). Springer. https://doi.org/10.1007/0-8176-4417-2_9
chicago: Hausel, Tamás. “Mirror Symmetry and Langlands Duality in the Non-Abelian
Hodge Theory of a Curve.” In Geometric Methods in Algebra and Number Theory,
235:193–217. Springer, 2005. https://doi.org/10.1007/0-8176-4417-2_9.
ieee: T. Hausel, “Mirror symmetry and Langlands duality in the non-Abelian Hodge
theory of a curve,” in Geometric Methods in Algebra and Number Theory,
vol. 235, Springer, 2005, pp. 193–217.
ista: 'Hausel T. 2005.Mirror symmetry and Langlands duality in the non-Abelian Hodge
theory of a curve. In: Geometric Methods in Algebra and Number Theory. Progress
in Mathematics, vol. 235, 193–217.'
mla: Hausel, Tamás. “Mirror Symmetry and Langlands Duality in the Non-Abelian Hodge
Theory of a Curve.” Geometric Methods in Algebra and Number Theory, vol.
235, Springer, 2005, pp. 193–217, doi:10.1007/0-8176-4417-2_9.
short: T. Hausel, in:, Geometric Methods in Algebra and Number Theory, Springer,
2005, pp. 193–217.
date_created: 2018-12-11T11:52:03Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T06:50:47Z
day: '01'
doi: 10.1007/0-8176-4417-2_9
extern: 1
intvolume: ' 235'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math/0406380
month: '01'
oa: 1
page: 193 - 217
publication: Geometric Methods in Algebra and Number Theory
publication_status: published
publisher: Springer
publist_id: '5752'
quality_controlled: 0
status: public
title: Mirror symmetry and Langlands duality in the non-Abelian Hodge theory of a
curve
type: book_chapter
volume: 235
year: '2005'
...
---
_id: '1463'
abstract:
- lang: eng
text: We study an integration theory in circle equivariant cohomology in order to
prove a theorem relating the cohomology ring of a hyperkähler quotient to the
cohomology ring of the quotient by a maximal abelian subgroup, analogous to a
theorem of Martin for symplectic quotients. We discuss applications of this theorem
to quiver varieties, and compute as an example the ordinary and equivariant cohomology
rings of a hyperpolygon space.
acknowledgement: ' Financial support was provided in part by NSF Grants DMS-0072675
and DMS-0305505.'
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
- first_name: Nicholas
full_name: Proudfoot, Nicholas J
last_name: Proudfoot
citation:
ama: Hausel T, Proudfoot N. Abelianization for hyperkähler quotients. Topology.
2005;44(1):231-248. doi:10.1016/j.top.2004.04.002
apa: Hausel, T., & Proudfoot, N. (2005). Abelianization for hyperkähler quotients.
Topology. Elsevier. https://doi.org/10.1016/j.top.2004.04.002
chicago: Hausel, Tamás, and Nicholas Proudfoot. “Abelianization for Hyperkähler
Quotients.” Topology. Elsevier, 2005. https://doi.org/10.1016/j.top.2004.04.002.
ieee: T. Hausel and N. Proudfoot, “Abelianization for hyperkähler quotients,” Topology,
vol. 44, no. 1. Elsevier, pp. 231–248, 2005.
ista: Hausel T, Proudfoot N. 2005. Abelianization for hyperkähler quotients. Topology.
44(1), 231–248.
mla: Hausel, Tamás, and Nicholas Proudfoot. “Abelianization for Hyperkähler Quotients.”
Topology, vol. 44, no. 1, Elsevier, 2005, pp. 231–48, doi:10.1016/j.top.2004.04.002.
short: T. Hausel, N. Proudfoot, Topology 44 (2005) 231–248.
date_created: 2018-12-11T11:52:10Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T06:50:55Z
day: '01'
doi: 10.1016/j.top.2004.04.002
extern: 1
intvolume: ' 44'
issue: '1'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math/0310141
month: '01'
oa: 1
page: 231 - 248
publication: Topology
publication_status: published
publisher: Elsevier
publist_id: '5735'
quality_controlled: 0
status: public
title: Abelianization for hyperkähler quotients
type: journal_article
volume: 44
year: '2005'
...
---
_id: '1742'
abstract:
- lang: eng
text: The effects of substrate temperature, growth rate, and postgrowth annealing
on the composition of Ge islands grown on Si(001) were investigated with a combination
of selective wet chemical etching and atomic force microscopy. A simple kinetic
model comprising only surface diffusion processes can explain all the experimentally
observed compositional profiles for pyramid and dome islands grown in the 560-620°C
range. From this model three-dimensional compositional maps were extracted. By
performing annealing experiments a change in the composition of the domes was
observed. This could be explained as the result of the islands' movement induced
by alloying-driven energy minimization. Also in this case kinetically hindered
bulk diffusion processes are not needed to explain the experimental observations.
acknowledgement: G. K. acknowledges the financial support of DAAD (Deutscher Akademischer
Austausch Dienst)
author:
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Giovanni
full_name: Costantini, Giovanni
last_name: Costantini
- first_name: Mathieu
full_name: Stoffel, Mathieu
last_name: Stoffel
- first_name: Rubén
full_name: Esteban, Rubén
last_name: Esteban
- first_name: Alexander
full_name: Bittner, Alexander M
last_name: Bittner
- first_name: Armando
full_name: Rastelli, Armando
last_name: Rastelli
- first_name: Ulrich
full_name: Denker, Ulrich
last_name: Denker
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
- first_name: Klaus
full_name: Kern, Klaus
last_name: Kern
citation:
ama: Katsaros G, Costantini G, Stoffel M, et al. Kinetic origin of island intermixing
during the growth of Ge on Si (001). Physical Review B - Condensed Matter and
Materials Physics. 2005;72(19). doi:10.1103/PhysRevB.72.195320
apa: Katsaros, G., Costantini, G., Stoffel, M., Esteban, R., Bittner, A., Rastelli,
A., … Kern, K. (2005). Kinetic origin of island intermixing during the growth
of Ge on Si (001). Physical Review B - Condensed Matter and Materials Physics.
American Physical Society. https://doi.org/10.1103/PhysRevB.72.195320
chicago: Katsaros, Georgios, Giovanni Costantini, Mathieu Stoffel, Rubén Esteban,
Alexander Bittner, Armando Rastelli, Ulrich Denker, Oliver Schmidt, and Klaus
Kern. “Kinetic Origin of Island Intermixing during the Growth of Ge on Si (001).”
Physical Review B - Condensed Matter and Materials Physics. American Physical
Society, 2005. https://doi.org/10.1103/PhysRevB.72.195320.
ieee: G. Katsaros et al., “Kinetic origin of island intermixing during the
growth of Ge on Si (001),” Physical Review B - Condensed Matter and Materials
Physics, vol. 72, no. 19. American Physical Society, 2005.
ista: Katsaros G, Costantini G, Stoffel M, Esteban R, Bittner A, Rastelli A, Denker
U, Schmidt O, Kern K. 2005. Kinetic origin of island intermixing during the growth
of Ge on Si (001). Physical Review B - Condensed Matter and Materials Physics.
72(19).
mla: Katsaros, Georgios, et al. “Kinetic Origin of Island Intermixing during the
Growth of Ge on Si (001).” Physical Review B - Condensed Matter and Materials
Physics, vol. 72, no. 19, American Physical Society, 2005, doi:10.1103/PhysRevB.72.195320.
short: G. Katsaros, G. Costantini, M. Stoffel, R. Esteban, A. Bittner, A. Rastelli,
U. Denker, O. Schmidt, K. Kern, Physical Review B - Condensed Matter and Materials
Physics 72 (2005).
date_created: 2018-12-11T11:53:46Z
date_published: 2005-11-15T00:00:00Z
date_updated: 2021-01-12T06:52:55Z
day: '15'
doi: 10.1103/PhysRevB.72.195320
extern: 1
intvolume: ' 72'
issue: '19'
month: '11'
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '5382'
quality_controlled: 0
status: public
title: Kinetic origin of island intermixing during the growth of Ge on Si (001)
type: journal_article
volume: 72
year: '2005'
...
---
_id: '1740'
abstract:
- lang: eng
text: 'A systematic study of the morphology of self-organized islands in the InAs/GaAs(0
0 1) and Ge/Si(0 0 1) systems is presented, based on high-resolution scanning
tunneling microscopy measurements. We demonstrate that in both cases two main
island families coexist: smaller pyramids bound by one type of shallow facets
and larger multifaceted domes. Their structure and facet orientation are precisely
determined, thus solving a highly debated argument in the case of InAs/GaAs(0
0 1). The comparison between the two material systems reveals the existence of
striking similarities that extend even to the nature of island precursors and
to the islands that form when depositing InGaAs or GeSi alloys. The implications
of these observations on a possible universal description of the Stranski-Krastanow
growth mode are discussed with respect to recent theoretical results.'
author:
- first_name: Giovanni
full_name: Costantini, Giovanni
last_name: Costantini
- first_name: Armando
full_name: Rastelli, Armando
last_name: Rastelli
- first_name: Carlos
full_name: Manzano, Carlos
last_name: Manzano
- first_name: P
full_name: Acosta-Diaz, P
last_name: Acosta Diaz
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Rudeeson
full_name: Songmuang, Rudeeson
last_name: Songmuang
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
- first_name: Hans
full_name: Von Känel, Hans
last_name: Von Känel
- first_name: Klaus
full_name: Kern, Klaus
last_name: Kern
citation:
ama: Costantini G, Rastelli A, Manzano C, et al. Pyramids and domes in the InAs/GaAs
(0 0 1) and Ge/Si (0 0 1) systems. Journal of Crystal Growth. 2005;278(1-4):38-45.
doi:10.1016/j.jcrysgro.2004.12.047
apa: Costantini, G., Rastelli, A., Manzano, C., Acosta Diaz, P., Katsaros, G., Songmuang,
R., … Kern, K. (2005). Pyramids and domes in the InAs/GaAs (0 0 1) and Ge/Si (0
0 1) systems. Journal of Crystal Growth. Elsevier. https://doi.org/10.1016/j.jcrysgro.2004.12.047
chicago: Costantini, Giovanni, Armando Rastelli, Carlos Manzano, P Acosta Diaz,
Georgios Katsaros, Rudeeson Songmuang, Oliver Schmidt, Hans Von Känel, and Klaus
Kern. “Pyramids and Domes in the InAs/GaAs (0 0 1) and Ge/Si (0 0 1) Systems.”
Journal of Crystal Growth. Elsevier, 2005. https://doi.org/10.1016/j.jcrysgro.2004.12.047.
ieee: G. Costantini et al., “Pyramids and domes in the InAs/GaAs (0 0 1)
and Ge/Si (0 0 1) systems,” Journal of Crystal Growth, vol. 278, no. 1–4.
Elsevier, pp. 38–45, 2005.
ista: Costantini G, Rastelli A, Manzano C, Acosta Diaz P, Katsaros G, Songmuang
R, Schmidt O, Von Känel H, Kern K. 2005. Pyramids and domes in the InAs/GaAs (0
0 1) and Ge/Si (0 0 1) systems. Journal of Crystal Growth. 278(1–4), 38–45.
mla: Costantini, Giovanni, et al. “Pyramids and Domes in the InAs/GaAs (0 0 1) and
Ge/Si (0 0 1) Systems.” Journal of Crystal Growth, vol. 278, no. 1–4, Elsevier,
2005, pp. 38–45, doi:10.1016/j.jcrysgro.2004.12.047.
short: G. Costantini, A. Rastelli, C. Manzano, P. Acosta Diaz, G. Katsaros, R. Songmuang,
O. Schmidt, H. Von Känel, K. Kern, Journal of Crystal Growth 278 (2005) 38–45.
date_created: 2018-12-11T11:53:45Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T06:52:54Z
day: '01'
doi: 10.1016/j.jcrysgro.2004.12.047
extern: 1
intvolume: ' 278'
issue: 1-4
month: '05'
page: 38 - 45
publication: Journal of Crystal Growth
publication_status: published
publisher: Elsevier
publist_id: '5384'
quality_controlled: 0
status: public
title: Pyramids and domes in the InAs/GaAs (0 0 1) and Ge/Si (0 0 1) systems
type: journal_article
volume: 278
year: '2005'
...
---
_id: '1743'
abstract:
- lang: eng
text: Laterally aligned multilayer GeSiSi islands grown on a patterned Si (001)
substrate are disclosed by selective etching of Si in a KOH solution. This procedure
allows us to visualize the vertical alignment of the islands in a three-dimensional
perspective. Our technique reveals that partly coalesced double islands in the
initial layer do not merge together, but instead gradually reproduce into well-separated
double islands in upper layers. We attribute this effect to very thin spacer layers,
which efficiently transfer the strain modulation of each island through the spacer
layer to the surface. The etching rate of Si is reduced in tensile strained regions,
which helps to preserve sufficient Si between the stacked islands to form a periodic
array of freestanding and vertically modulated heterostructure pillars.
acknowledgement: This work was supported by the BMBF (03N8711) and the EU NOE SANDiE
author:
- first_name: Zheyang
full_name: Zhong, Zheyang
last_name: Zhong
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Mathieu
full_name: Stoffel, Mathieu
last_name: Stoffel
- first_name: Giovanni
full_name: Costantini, Giovanni
last_name: Costantini
- first_name: Klaus
full_name: Kern, Klaus
last_name: Kern
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
- first_name: Neng
full_name: Jin-Phillipp, Neng Y
last_name: Jin Phillipp
- first_name: Günther
full_name: Bauer, Günther
last_name: Bauer
citation:
ama: Zhong Z, Katsaros G, Stoffel M, et al. Periodic pillar structures by Si etching
of multilayer GeSi/Si islands. Applied Physics Letters. 2005;87(26):1-3.
doi:10.1063/1.2150278
apa: Zhong, Z., Katsaros, G., Stoffel, M., Costantini, G., Kern, K., Schmidt, O.,
… Bauer, G. (2005). Periodic pillar structures by Si etching of multilayer GeSi/Si
islands. Applied Physics Letters. American Institute of Physics. https://doi.org/10.1063/1.2150278
chicago: Zhong, Zheyang, Georgios Katsaros, Mathieu Stoffel, Giovanni Costantini,
Klaus Kern, Oliver Schmidt, Neng Jin Phillipp, and Günther Bauer. “Periodic Pillar
Structures by Si Etching of Multilayer GeSi/Si Islands.” Applied Physics Letters.
American Institute of Physics, 2005. https://doi.org/10.1063/1.2150278.
ieee: Z. Zhong et al., “Periodic pillar structures by Si etching of multilayer
GeSi/Si islands,” Applied Physics Letters, vol. 87, no. 26. American Institute
of Physics, pp. 1–3, 2005.
ista: Zhong Z, Katsaros G, Stoffel M, Costantini G, Kern K, Schmidt O, Jin Phillipp
N, Bauer G. 2005. Periodic pillar structures by Si etching of multilayer GeSi/Si
islands. Applied Physics Letters. 87(26), 1–3.
mla: Zhong, Zheyang, et al. “Periodic Pillar Structures by Si Etching of Multilayer
GeSi/Si Islands.” Applied Physics Letters, vol. 87, no. 26, American Institute
of Physics, 2005, pp. 1–3, doi:10.1063/1.2150278.
short: Z. Zhong, G. Katsaros, M. Stoffel, G. Costantini, K. Kern, O. Schmidt, N.
Jin Phillipp, G. Bauer, Applied Physics Letters 87 (2005) 1–3.
date_created: 2018-12-11T11:53:46Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T06:52:55Z
day: '01'
doi: 10.1063/1.2150278
extern: 1
intvolume: ' 87'
issue: '26'
month: '01'
page: 1 - 3
publication: Applied Physics Letters
publication_status: published
publisher: American Institute of Physics
publist_id: '5381'
quality_controlled: 0
status: public
title: Periodic pillar structures by Si etching of multilayer GeSi/Si islands
type: journal_article
volume: 87
year: '2005'
...
---
_id: '1744'
abstract:
- lang: eng
text: This paper presents optical duobinary and dicode signalling, as alternatives
to the binary format, in order to improve the transmission performance in the
presense of non-linear effects in a dense wavelength division multiplex (WDM)
optical system. Duobinary signalling is applied to an optical system to explore
the reduction of stimulated Brillouin scattering (SBS) effects. Duobinary signalling
suppresses the SBS effects, and an eye-opening improvement of 0.25 to 1.2 dB is
achieved relative to binary transmission over a range of input power levels. An
experimental study demonstrates that duobinary modulation suppresses the four
wave mixing (FWM) products of a dense WDM system by a maximum of 3 dB. The suppression
is maintained over a range of channel spacings. An investigation of the impact
of fibre dispersion on FWM products under binary, duobinary and dicode modulation
in a dense WDM system is then performed, with interchannel spacing and optical
power variation. This leads to the development of a set of guidelines for the
application areas, in which it is appropriate to use duobinary or dicode modulation
in WDM systems as a means of mitigating the impact of FWM.
acknowledgement: IET
author:
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Izzat
full_name: Darwazeh, Izzat Z
last_name: Darwazeh
- first_name: Phil
full_name: Lane, Phil M
last_name: Lane
citation:
ama: Katsaros G, Darwazeh I, Lane P. Non linear transmission effects in duobinary
and dicode optical systems. IEE Proceedings - Optoelectronics. 2005;152(6):344-352.
doi:10.1049/ip-opt:20045067
apa: Katsaros, G., Darwazeh, I., & Lane, P. (2005). Non linear transmission
effects in duobinary and dicode optical systems. IEE Proceedings - Optoelectronics.
Institute of Electrical Engineers. https://doi.org/10.1049/ip-opt:20045067
chicago: Katsaros, Georgios, Izzat Darwazeh, and Phil Lane. “Non Linear Transmission
Effects in Duobinary and Dicode Optical Systems.” IEE Proceedings - Optoelectronics.
Institute of Electrical Engineers, 2005. https://doi.org/10.1049/ip-opt:20045067.
ieee: G. Katsaros, I. Darwazeh, and P. Lane, “Non linear transmission effects in
duobinary and dicode optical systems,” IEE Proceedings - Optoelectronics,
vol. 152, no. 6. Institute of Electrical Engineers, pp. 344–352, 2005.
ista: Katsaros G, Darwazeh I, Lane P. 2005. Non linear transmission effects in duobinary
and dicode optical systems. IEE Proceedings - Optoelectronics. 152(6), 344–352.
mla: Katsaros, Georgios, et al. “Non Linear Transmission Effects in Duobinary and
Dicode Optical Systems.” IEE Proceedings - Optoelectronics, vol. 152, no.
6, Institute of Electrical Engineers, 2005, pp. 344–52, doi:10.1049/ip-opt:20045067.
short: G. Katsaros, I. Darwazeh, P. Lane, IEE Proceedings - Optoelectronics 152
(2005) 344–352.
date_created: 2018-12-11T11:53:46Z
date_published: 2005-12-01T00:00:00Z
date_updated: 2021-01-12T06:52:55Z
day: '01'
doi: 10.1049/ip-opt:20045067
extern: 1
intvolume: ' 152'
issue: '6'
month: '12'
page: 344 - 352
publication: IEE Proceedings - Optoelectronics
publication_status: published
publisher: Institute of Electrical Engineers
publist_id: '5380'
quality_controlled: 0
status: public
title: Non linear transmission effects in duobinary and dicode optical systems
type: journal_article
volume: 152
year: '2005'
...
---
_id: '1741'
abstract:
- lang: eng
text: SiGe islands move laterally on a Si(001) substrate during in situ postgrowth
annealing. This surprising behavior is revealed by an analysis of the substrate
surface morphology after island removal using wet chemical etching. We explain
the island motion by asymmetric surface-mediated alloying. Material leaves one
side of the island by surface diffusion, and mixes with additional Si from the
surrounding surface as it redeposits on the other side. Thus the island moves
laterally while becoming larger and more dilute.
acknowledgement: The work was supported by the BMBF (03N8711)
author:
- first_name: Ulrich
full_name: Denker, Ulrich
last_name: Denker
- first_name: Armando
full_name: Rastelli, Armando
last_name: Rastelli
- first_name: Mathieu
full_name: Stoffel, Mathieu
last_name: Stoffel
- first_name: Jerry
full_name: Tersoff, Jerry
last_name: Tersoff
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Giovanni
full_name: Costantini, Giovanni
last_name: Costantini
- first_name: Klaus
full_name: Kern, Klaus
last_name: Kern
- first_name: Neng
full_name: Jin-Phillipp, Neng Y
last_name: Jin Phillipp
- first_name: David
full_name: Jesson, David E
last_name: Jesson
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
citation:
ama: Denker U, Rastelli A, Stoffel M, et al. Lateral motion of SiGe islands driven
by surface-mediated alloying. Physical Review Letters. 2005;94(21). doi:10.1103/PhysRevLett.94.216103
apa: Denker, U., Rastelli, A., Stoffel, M., Tersoff, J., Katsaros, G., Costantini,
G., … Schmidt, O. (2005). Lateral motion of SiGe islands driven by surface-mediated
alloying. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.94.216103
chicago: Denker, Ulrich, Armando Rastelli, Mathieu Stoffel, Jerry Tersoff, Georgios
Katsaros, Giovanni Costantini, Klaus Kern, Neng Jin Phillipp, David Jesson, and
Oliver Schmidt. “Lateral Motion of SiGe Islands Driven by Surface-Mediated Alloying.”
Physical Review Letters. American Physical Society, 2005. https://doi.org/10.1103/PhysRevLett.94.216103.
ieee: U. Denker et al., “Lateral motion of SiGe islands driven by surface-mediated
alloying,” Physical Review Letters, vol. 94, no. 21. American Physical
Society, 2005.
ista: Denker U, Rastelli A, Stoffel M, Tersoff J, Katsaros G, Costantini G, Kern
K, Jin Phillipp N, Jesson D, Schmidt O. 2005. Lateral motion of SiGe islands driven
by surface-mediated alloying. Physical Review Letters. 94(21).
mla: Denker, Ulrich, et al. “Lateral Motion of SiGe Islands Driven by Surface-Mediated
Alloying.” Physical Review Letters, vol. 94, no. 21, American Physical
Society, 2005, doi:10.1103/PhysRevLett.94.216103.
short: U. Denker, A. Rastelli, M. Stoffel, J. Tersoff, G. Katsaros, G. Costantini,
K. Kern, N. Jin Phillipp, D. Jesson, O. Schmidt, Physical Review Letters 94 (2005).
date_created: 2018-12-11T11:53:46Z
date_published: 2005-06-03T00:00:00Z
date_updated: 2021-01-12T06:52:54Z
day: '03'
doi: 10.1103/PhysRevLett.94.216103
extern: 1
intvolume: ' 94'
issue: '21'
month: '06'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5383'
quality_controlled: 0
status: public
title: Lateral motion of SiGe islands driven by surface-mediated alloying
type: journal_article
volume: 94
year: '2005'
...
---
_id: '1795'
abstract:
- lang: eng
text: 'Background: Murine leukemia virus (MLV) vector particles can be pseudotyped
with a truncated variant of the human immunodeficiency virus type 1 (HIV-1) envelope
protein (Env) and selectively target gene transfer to human cells expressing both
CD4 and an appropriate co-receptor. Vector transduction mimics the HIV-1 entry
process and is therefore a safe tool to study HIV-1 entry. Results: Using FLY
cells, which express the MLV gag and pol genes, we generated stable producer cell
lines that express the HIV-1 envelope gene and a retroviral vector genome encoding
the green fluorescent protein (GFP). The BH10 or 89.6 P HIV-1 Env was expressed
from a bicistronic vector which allowed the rapid selection of stable cell lines.
A codon-usage-optimized synthetic env gene permitted high, Rev-independent Env
expression. Vectors generated by these producer cells displayed different sensitivity
to entry inhibitors. Conclusion: These data illustrate that MLV/HIV-1 vectors
are a valuable screening system for entry inhibitors or neutralizing antisera
generated by vaccines.'
author:
- first_name: Sandra
full_name: Sandra Siegert
id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
last_name: Siegert
orcid: 0000-0001-8635-0877
- first_name: Sonja
full_name: Thaler, Sonja
last_name: Thaler
- first_name: Ralf
full_name: Wagner, Ralf
last_name: Wagner
- first_name: Barbara
full_name: Schnierle, Barbara S
last_name: Schnierle
citation:
ama: Siegert S, Thaler S, Wagner R, Schnierle B. Assessment of HIV-1 entry inhibitors
by MLV/HIV-1 pseudotyped vectors. AIDS Research and Therapy. 2005;2(1).
doi:10.1186/1742-6405-2-7
apa: Siegert, S., Thaler, S., Wagner, R., & Schnierle, B. (2005). Assessment
of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors. AIDS Research and
Therapy. BioMed Central. https://doi.org/10.1186/1742-6405-2-7
chicago: Siegert, Sandra, Sonja Thaler, Ralf Wagner, and Barbara Schnierle. “Assessment
of HIV-1 Entry Inhibitors by MLV/HIV-1 Pseudotyped Vectors.” AIDS Research
and Therapy. BioMed Central, 2005. https://doi.org/10.1186/1742-6405-2-7.
ieee: S. Siegert, S. Thaler, R. Wagner, and B. Schnierle, “Assessment of HIV-1 entry
inhibitors by MLV/HIV-1 pseudotyped vectors,” AIDS Research and Therapy,
vol. 2, no. 1. BioMed Central, 2005.
ista: Siegert S, Thaler S, Wagner R, Schnierle B. 2005. Assessment of HIV-1 entry
inhibitors by MLV/HIV-1 pseudotyped vectors. AIDS Research and Therapy. 2(1).
mla: Siegert, Sandra, et al. “Assessment of HIV-1 Entry Inhibitors by MLV/HIV-1
Pseudotyped Vectors.” AIDS Research and Therapy, vol. 2, no. 1, BioMed
Central, 2005, doi:10.1186/1742-6405-2-7.
short: S. Siegert, S. Thaler, R. Wagner, B. Schnierle, AIDS Research and Therapy
2 (2005).
date_created: 2018-12-11T11:54:03Z
date_published: 2005-09-12T00:00:00Z
date_updated: 2021-01-12T06:53:15Z
day: '12'
doi: 10.1186/1742-6405-2-7
extern: 1
intvolume: ' 2'
issue: '1'
month: '09'
publication: AIDS Research and Therapy
publication_status: published
publisher: BioMed Central
publist_id: '5315'
quality_controlled: 0
status: public
title: Assessment of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors
type: journal_article
volume: 2
year: '2005'
...
---
_id: '1962'
abstract:
- lang: eng
text: |2-
Complex I of respiratory chains plays a central role in bioenergetics and is implicated in many human neurodegenerative diseases. An understanding of its mechanism requires a knowledge of the organization of redox centers. The arrangement of iron-sulfur clusters in the hydrophilic domain of complex I from Thermus thermophilus has been determined with the use of x-ray crystallography. One binuclear and six tetranuclear clusters are arranged, maximally 14 angstroms apart, in an 84-angstrom-long electron transfer chain. The binuclear cluster N1a and the tetranuclear cluster N7 are not in this pathway. Cluster N1a may play a role in the prevention of oxidative damage. The structure provides a framework for the interpretation of the large amounts of data accumulated on complex I.
acknowledgement: This work was funded by the Medical Research Council.
author:
- first_name: Philip
full_name: 'Hinchliffe, Philip '
last_name: Hinchliffe
- first_name: Leonid A
full_name: Leonid Sazanov
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: 'Hinchliffe P, Sazanov LA. Biochemistry: Organization of iron-sulfur clusters
in respiratory complex I. Science. 2005;309(5735):771-774. doi:10.1126/science.1113988'
apa: 'Hinchliffe, P., & Sazanov, L. A. (2005). Biochemistry: Organization of
iron-sulfur clusters in respiratory complex I. Science. American Association
for the Advancement of Science. https://doi.org/10.1126/science.1113988'
chicago: 'Hinchliffe, Philip, and Leonid A Sazanov. “Biochemistry: Organization
of Iron-Sulfur Clusters in Respiratory Complex I.” Science. American Association
for the Advancement of Science, 2005. https://doi.org/10.1126/science.1113988.'
ieee: 'P. Hinchliffe and L. A. Sazanov, “Biochemistry: Organization of iron-sulfur
clusters in respiratory complex I,” Science, vol. 309, no. 5735. American
Association for the Advancement of Science, pp. 771–774, 2005.'
ista: 'Hinchliffe P, Sazanov LA. 2005. Biochemistry: Organization of iron-sulfur
clusters in respiratory complex I. Science. 309(5735), 771–774.'
mla: 'Hinchliffe, Philip, and Leonid A. Sazanov. “Biochemistry: Organization of
Iron-Sulfur Clusters in Respiratory Complex I.” Science, vol. 309, no.
5735, American Association for the Advancement of Science, 2005, pp. 771–74, doi:10.1126/science.1113988.'
short: P. Hinchliffe, L.A. Sazanov, Science 309 (2005) 771–774.
date_created: 2018-12-11T11:54:56Z
date_published: 2005-07-29T00:00:00Z
date_updated: 2021-01-12T06:54:22Z
day: '29'
doi: 10.1126/science.1113988
extern: 1
intvolume: ' 309'
issue: '5735'
month: '07'
page: 771 - 774
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '5122'
quality_controlled: 0
status: public
title: 'Biochemistry: Organization of iron-sulfur clusters in respiratory complex
I'
type: journal_article
volume: 309
year: '2005'
...
---
_id: '210'
abstract:
- lang: eng
text: Harold Davenport was one of the truly great mathematicians of the twentieth
century. Based on lectures he gave at the University of Michigan in the early
1960s, this book is concerned with the use of analytic methods in the study of
integer solutions to Diophantine equations and Diophantine inequalities. It provides
an excellent introduction to a timeless area of number theory that is still as
widely researched today as it was when the book originally appeared. The three
main themes of the book are Waring's problem and the representation of integers
by diagonal forms, the solubility in integers of systems of forms in many variables,
and the solubility in integers of diagonal inequalities. For the second edition
of the book a comprehensive foreword has been added in which three prominent authorities
describe the modern context and recent developments. A thorough bibliography has
also been added.
alternative_title:
- Cambridge Mathematical Library
article_processing_charge: No
author:
- first_name: Harold
full_name: Davenport, Harold
last_name: Davenport
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: Davenport H, Browning TD. Analytic Methods for Diophantine Equations and
Diophantine Inequalities. Cambridge University Press; 2005. doi:10.1017/CBO9780511542893
apa: Davenport, H., & Browning, T. D. (2005). Analytic Methods for Diophantine
Equations and Diophantine Inequalities. Cambridge University Press. https://doi.org/10.1017/CBO9780511542893
chicago: Davenport, Harold, and Timothy D Browning. Analytic Methods for Diophantine
Equations and Diophantine Inequalities. Cambridge University Press, 2005.
https://doi.org/10.1017/CBO9780511542893.
ieee: H. Davenport and T. D. Browning, Analytic Methods for Diophantine Equations
and Diophantine Inequalities. Cambridge University Press, 2005.
ista: Davenport H, Browning TD. 2005. Analytic Methods for Diophantine Equations
and Diophantine Inequalities, Cambridge University Press, 140p.
mla: Davenport, Harold, and Timothy D. Browning. Analytic Methods for Diophantine
Equations and Diophantine Inequalities. Cambridge University Press, 2005,
doi:10.1017/CBO9780511542893.
short: H. Davenport, T.D. Browning, Analytic Methods for Diophantine Equations and
Diophantine Inequalities, Cambridge University Press, 2005.
date_created: 2018-12-11T11:45:13Z
date_published: 2005-03-03T00:00:00Z
date_updated: 2021-12-21T11:02:25Z
day: '03'
doi: 10.1017/CBO9780511542893
extern: '1'
language:
- iso: eng
month: '03'
oa_version: None
page: '140'
publication_identifier:
eisbn:
- 9-780-5115-4289-3
publication_status: published
publisher: Cambridge University Press
publist_id: '7702'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Analytic Methods for Diophantine Equations and Diophantine Inequalities
type: book
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2005'
...
---
_id: '211'
abstract:
- lang: eng
text: Let f ∈ ℤ[x] be a polynomial of degree d. The paucity of non-trivial positive
integer solutions to the equation f(x1)+f(x 2)=f(x3)+f(x4) is established, provided
that d ≤ 7$. Also the corresponding situation is investigated for equal sums of
three like polynomials.
acknowledgement: grant number GR/R93155/01
author:
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: Browning TD. Equal sums of like polynomials. Bulletin of the London Mathematical
Society. 2005;37(6):801-808. doi:10.1112/S0024609305004741
apa: Browning, T. D. (2005). Equal sums of like polynomials. Bulletin of the
London Mathematical Society. John Wiley and Sons Ltd. https://doi.org/10.1112/S0024609305004741
chicago: Browning, Timothy D. “Equal Sums of like Polynomials.” Bulletin of the
London Mathematical Society. John Wiley and Sons Ltd, 2005. https://doi.org/10.1112/S0024609305004741.
ieee: T. D. Browning, “Equal sums of like polynomials,” Bulletin of the London
Mathematical Society, vol. 37, no. 6. John Wiley and Sons Ltd, pp. 801–808,
2005.
ista: Browning TD. 2005. Equal sums of like polynomials. Bulletin of the London
Mathematical Society. 37(6), 801–808.
mla: Browning, Timothy D. “Equal Sums of like Polynomials.” Bulletin of the London
Mathematical Society, vol. 37, no. 6, John Wiley and Sons Ltd, 2005, pp. 801–08,
doi:10.1112/S0024609305004741.
short: T.D. Browning, Bulletin of the London Mathematical Society 37 (2005) 801–808.
date_created: 2018-12-11T11:45:14Z
date_published: 2005-12-01T00:00:00Z
date_updated: 2021-01-12T06:55:22Z
day: '01'
doi: 10.1112/S0024609305004741
extern: 1
intvolume: ' 37'
issue: '6'
month: '12'
page: 801 - 808
publication: Bulletin of the London Mathematical Society
publication_status: published
publisher: John Wiley and Sons Ltd
publist_id: '7700'
quality_controlled: 0
status: public
title: Equal sums of like polynomials
type: journal_article
volume: 37
year: '2005'
...
---
_id: '212'
abstract:
- lang: eng
text: For any n ≧ 2, let F ∈ ℤ [ x 1, … , xn ] be a form of degree d≧ 2, which produces
a geometrically irreducible hypersurface in ℙn–1. This paper is concerned with
the number N(F;B) of rational points on F = 0 which have height at most B. For
any ε > 0 we establish the estimate N(F; B) = O(B n− 2+ ε ), whenever either
n ≦ 5 or the hypersurface is not a union of lines. Here the implied constant depends
at most upon d, n and ε.
author:
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Roger
full_name: Heath-Brown, Roger
last_name: Heath Brown
citation:
ama: Browning TD, Heath Brown R. Counting rational points on hypersurfaces. Journal
fur die Reine und Angewandte Mathematik. 2005;(584):83-115. doi:https://doi.org/10.1515/crll.2005.2005.584.83
apa: Browning, T. D., & Heath Brown, R. (2005). Counting rational points on
hypersurfaces. Journal Fur Die Reine Und Angewandte Mathematik. Walter
de Gruyter and Co . https://doi.org/10.1515/crll.2005.2005.584.83
chicago: Browning, Timothy D, and Roger Heath Brown. “Counting Rational Points on
Hypersurfaces.” Journal Fur Die Reine Und Angewandte Mathematik. Walter
de Gruyter and Co , 2005. https://doi.org/10.1515/crll.2005.2005.584.83.
ieee: T. D. Browning and R. Heath Brown, “Counting rational points on hypersurfaces,”
Journal fur die Reine und Angewandte Mathematik, no. 584. Walter de Gruyter
and Co , pp. 83–115, 2005.
ista: Browning TD, Heath Brown R. 2005. Counting rational points on hypersurfaces.
Journal fur die Reine und Angewandte Mathematik. (584), 83–115.
mla: Browning, Timothy D., and Roger Heath Brown. “Counting Rational Points on Hypersurfaces.”
Journal Fur Die Reine Und Angewandte Mathematik, no. 584, Walter de Gruyter
and Co , 2005, pp. 83–115, doi:https://doi.org/10.1515/crll.2005.2005.584.83.
short: T.D. Browning, R. Heath Brown, Journal Fur Die Reine Und Angewandte Mathematik
(2005) 83–115.
date_created: 2018-12-11T11:45:14Z
date_published: 2005-11-26T00:00:00Z
date_updated: 2021-01-12T06:55:25Z
day: '26'
doi: https://doi.org/10.1515/crll.2005.2005.584.83
extern: 1
issue: '584'
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0707.2296
month: '11'
oa: 1
page: 83 - 115
publication: Journal fur die Reine und Angewandte Mathematik
publication_status: published
publisher: 'Walter de Gruyter and Co '
publist_id: '7701'
quality_controlled: 0
status: public
title: Counting rational points on hypersurfaces
type: journal_article
year: '2005'
...
---
_id: '214'
abstract:
- lang: eng
text: Given an absolutely irreducible ternary form F, the purpose of this paper
is to produce better upper bounds for the number of integer solutions to the equation
F=0, that are restricted to lie in very lopsided boxes. As an application of the
main result, a new paucity estimate is obtained for equal sums of two like powers.
author:
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Roger
full_name: Heath-Brown, Roger
last_name: Heath Brown
citation:
ama: Browning TD, Heath Brown R. Plane curves in boxes and equal sums of two powers.
Mathematische Zeitschrift. 2005;251(2):233-247. doi:10.1007/s00209-004-0719-z
apa: Browning, T. D., & Heath Brown, R. (2005). Plane curves in boxes and equal
sums of two powers. Mathematische Zeitschrift. Unknown. https://doi.org/10.1007/s00209-004-0719-z
chicago: Browning, Timothy D, and Roger Heath Brown. “Plane Curves in Boxes and
Equal Sums of Two Powers.” Mathematische Zeitschrift. Unknown, 2005. https://doi.org/10.1007/s00209-004-0719-z.
ieee: T. D. Browning and R. Heath Brown, “Plane curves in boxes and equal sums of
two powers,” Mathematische Zeitschrift, vol. 251, no. 2. Unknown, pp. 233–247,
2005.
ista: Browning TD, Heath Brown R. 2005. Plane curves in boxes and equal sums of
two powers. Mathematische Zeitschrift. 251(2), 233–247.
mla: Browning, Timothy D., and Roger Heath Brown. “Plane Curves in Boxes and Equal
Sums of Two Powers.” Mathematische Zeitschrift, vol. 251, no. 2, Unknown,
2005, pp. 233–47, doi:10.1007/s00209-004-0719-z.
short: T.D. Browning, R. Heath Brown, Mathematische Zeitschrift 251 (2005) 233–247.
date_created: 2018-12-11T11:45:15Z
date_published: 2005-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:33Z
day: '01'
doi: 10.1007/s00209-004-0719-z
extern: 1
intvolume: ' 251'
issue: '2'
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/math/0506497
month: '09'
oa: 1
page: 233 - 247
publication: Mathematische Zeitschrift
publication_status: published
publisher: Unknown
publist_id: '7699'
quality_controlled: 0
status: public
title: Plane curves in boxes and equal sums of two powers
type: journal_article
volume: 251
year: '2005'
...
---
_id: '217'
abstract:
- lang: eng
text: We show that the number of nontrivial rational points of height at most B,
which lie on the cubic surface x1 x2 x3 = x4 (x1 + x2 + x3)2, has order of magnitude
B (log B)6. This agrees with Manin's conjecture.
acknowledgement: EPSRC GR/R93155/01
author:
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: Browning TD. The density of rational points on a certain singular cubic surface.
Journal of Number Theory. 2005;119(2):242-283. doi:10.1016/j.jnt.2005.11.007
apa: Browning, T. D. (2005). The density of rational points on a certain singular
cubic surface. Journal of Number Theory. Elsevier. https://doi.org/10.1016/j.jnt.2005.11.007
chicago: Browning, Timothy D. “The Density of Rational Points on a Certain Singular
Cubic Surface.” Journal of Number Theory. Elsevier, 2005. https://doi.org/10.1016/j.jnt.2005.11.007.
ieee: T. D. Browning, “The density of rational points on a certain singular cubic
surface,” Journal of Number Theory, vol. 119, no. 2. Elsevier, pp. 242–283,
2005.
ista: Browning TD. 2005. The density of rational points on a certain singular cubic
surface. Journal of Number Theory. 119(2), 242–283.
mla: Browning, Timothy D. “The Density of Rational Points on a Certain Singular
Cubic Surface.” Journal of Number Theory, vol. 119, no. 2, Elsevier, 2005,
pp. 242–83, doi:10.1016/j.jnt.2005.11.007.
short: T.D. Browning, Journal of Number Theory 119 (2005) 242–283.
date_created: 2018-12-11T11:45:16Z
date_published: 2005-12-27T00:00:00Z
date_updated: 2021-01-12T06:55:45Z
day: '27'
doi: 10.1016/j.jnt.2005.11.007
extern: 1
intvolume: ' 119'
issue: '2'
month: '12'
page: 242 - 283
publication: Journal of Number Theory
publication_status: published
publisher: Elsevier
publist_id: '7695'
quality_controlled: 0
status: public
title: The density of rational points on a certain singular cubic surface
type: journal_article
volume: 119
year: '2005'
...
---
_id: '2307'
abstract:
- lang: eng
text: The human norepinephrine (NE) transporter (hNET) attenuates neuronal signaling
by rapid NE clearance from the synaptic cleft, and NET is a target for cocaine
and amphetamines as well as therapeutics for depression, obsessive-compulsive
disorder, and post-traumatic stress disorder. In spite of its central importance
in the nervous system, little is known about how NET substrates, such as NE, 1-methyl-4-tetrahydropyridinium
(MPP+), or amphetamine, interact with NET at the molecular level. Nor do we understand
the mechanisms behind the transport rate. Previously we introduced a fluorescent
substrate similar to MPP+, which allowed separate and simultaneous binding and
transport measurement (Schwartz, J. W., Blakely, R. D., and DeFelice, L. J. (2003)
J. Biol. Chem. 278, 9768-9777). Here we use this substrate, 4-(4-(dimethylamino)styrl)-N-methyl-pyridinium
(ASP+), in combination with green fluorescent protein-tagged hNETs to measure
substrate-transporter stoichiometry and substrate binding kinetics. Calibrated
confocal microscopy and fluorescence correlation spectroscopy reveal that hNETs,
which are homo-multimers, bind one substrate molecule per transporter subunit.
Substrate residence at the transporter, obtained from rapid on-off kinetics revealed
in fluorescence correlation spectroscopy, is 526 μs. Substrate residence obtained
by infinite dilution is 1000 times slower. This novel examination of substrate-transporter
kinetics indicates that a single ASP + molecule binds and unbinds thousands of
times before being transported or ultimately dissociated from hNET. Calibrated
fluorescent images combined with mass spectroscopy give a transport rate of 0.06
ASP +/hNET-protein/s, thus 36,000 on-off binding events (and 36 actual departures)
occur for one transport event. Therefore binding has a low probability of resulting
in transport. We interpret these data to mean that inefficient binding could contribute
to slow transport rates.
author:
- first_name: Joel
full_name: Schwartz, Joel W
last_name: Schwartz
- first_name: Gaia
full_name: Gaia Novarino
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: David
full_name: Piston, David W
last_name: Piston
- first_name: Louis
full_name: DeFelice, Louis J
last_name: Defelice
citation:
ama: Schwartz J, Novarino G, Piston D, Defelice L. Substrate binding stoichiometry
and kinetics of the norepinephrine transporter. Journal of Biological Chemistry.
2005;280(19):19177-19184. doi:10.1074/jbc.M412923200
apa: Schwartz, J., Novarino, G., Piston, D., & Defelice, L. (2005). Substrate
binding stoichiometry and kinetics of the norepinephrine transporter. Journal
of Biological Chemistry. American Society for Biochemistry and Molecular Biology.
https://doi.org/10.1074/jbc.M412923200
chicago: Schwartz, Joel, Gaia Novarino, David Piston, and Louis Defelice. “Substrate
Binding Stoichiometry and Kinetics of the Norepinephrine Transporter.” Journal
of Biological Chemistry. American Society for Biochemistry and Molecular Biology,
2005. https://doi.org/10.1074/jbc.M412923200.
ieee: J. Schwartz, G. Novarino, D. Piston, and L. Defelice, “Substrate binding stoichiometry
and kinetics of the norepinephrine transporter,” Journal of Biological Chemistry,
vol. 280, no. 19. American Society for Biochemistry and Molecular Biology, pp.
19177–19184, 2005.
ista: Schwartz J, Novarino G, Piston D, Defelice L. 2005. Substrate binding stoichiometry
and kinetics of the norepinephrine transporter. Journal of Biological Chemistry.
280(19), 19177–19184.
mla: Schwartz, Joel, et al. “Substrate Binding Stoichiometry and Kinetics of the
Norepinephrine Transporter.” Journal of Biological Chemistry, vol. 280,
no. 19, American Society for Biochemistry and Molecular Biology, 2005, pp. 19177–84,
doi:10.1074/jbc.M412923200.
short: J. Schwartz, G. Novarino, D. Piston, L. Defelice, Journal of Biological Chemistry
280 (2005) 19177–19184.
date_created: 2018-12-11T11:56:54Z
date_published: 2005-05-13T00:00:00Z
date_updated: 2021-01-12T06:56:40Z
day: '13'
doi: 10.1074/jbc.M412923200
extern: 1
intvolume: ' 280'
issue: '19'
month: '05'
page: 19177 - 19184
publication: Journal of Biological Chemistry
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '4619'
quality_controlled: 0
status: public
title: Substrate binding stoichiometry and kinetics of the norepinephrine transporter
type: journal_article
volume: 280
year: '2005'
...
---
_id: '2335'
abstract:
- lang: eng
text: This book contains a unique survey of the mathematically rigorous results
about the quantum-mechanical many-body problem that have been obtained by the
authors in the past seven years. It addresses a topic that is not only rich mathematically,
using a large variety of techniques in mathematical analysis, but is also one
with strong ties to current experiments on ultra-cold Bose gases and Bose-Einstein
condensation. The book provides a pedagogical entry into an active area of ongoing
research for both graduate students and researchers. It is an outgrowth of a course
given by the authors for graduate students and post-doctoral researchers at the
Oberwolfach Research Institute in 2004. The book also provides a coherent summary
of the field and a reference for mathematicians and physicists active in research
on quantum mechanics.
alternative_title:
- Oberwolfach Seminars
article_processing_charge: No
author:
- first_name: Élliott
full_name: Lieb, Élliott
last_name: Lieb
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan
last_name: Solovej
- first_name: Jakob
full_name: Yngvason, Jakob
last_name: Yngvason
citation:
ama: 'Lieb É, Seiringer R, Solovej J, Yngvason J. The Mathematics of the Bose
Gas and Its Condensation. Vol 34. Basel ; Berlin: Birkhäuser Verlag; 2005.
doi:10.1007/b137508'
apa: 'Lieb, É., Seiringer, R., Solovej, J., & Yngvason, J. (2005). The Mathematics
of the Bose gas and its Condensation (Vol. 34). Basel ; Berlin: Birkhäuser
Verlag. https://doi.org/10.1007/b137508'
chicago: 'Lieb, Élliott, Robert Seiringer, Jan Solovej, and Jakob Yngvason. The
Mathematics of the Bose Gas and Its Condensation. Vol. 34. Basel ; Berlin:
Birkhäuser Verlag, 2005. https://doi.org/10.1007/b137508.'
ieee: 'É. Lieb, R. Seiringer, J. Solovej, and J. Yngvason, The Mathematics of
the Bose gas and its Condensation, vol. 34. Basel ; Berlin: Birkhäuser Verlag,
2005.'
ista: 'Lieb É, Seiringer R, Solovej J, Yngvason J. 2005. The Mathematics of the
Bose gas and its Condensation, Basel ; Berlin: Birkhäuser Verlag, VIII, 203p.'
mla: Lieb, Élliott, et al. The Mathematics of the Bose Gas and Its Condensation.
Vol. 34, Birkhäuser Verlag, 2005, doi:10.1007/b137508.
short: É. Lieb, R. Seiringer, J. Solovej, J. Yngvason, The Mathematics of the Bose
Gas and Its Condensation, Birkhäuser Verlag, Basel ; Berlin, 2005.
date_created: 2018-12-11T11:57:03Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-12-22T08:04:00Z
day: '01'
doi: 10.1007/b137508
extern: '1'
external_id:
arxiv:
- cond-mat/0610117
intvolume: ' 34'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/cond-mat/0610117
month: '01'
oa: 1
oa_version: Preprint
page: VIII, 203
place: Basel ; Berlin
publication_identifier:
isbn:
- 978-3-7643-7336-8
publication_status: published
publisher: Birkhäuser Verlag
publist_id: '4591'
quality_controlled: '1'
status: public
title: The Mathematics of the Bose gas and its Condensation
type: book
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 34
year: '2005'
...
---
_id: '2336'
abstract:
- lang: eng
text: |2-
Now that the low temperature properties of quantum-mechanical many-body systems (bosons) at low density, ρ, can be examined experimentally it is appropriate to revisit some of the formulas deduced by many authors 4–5 decades ago, and to explore new regimes not treated before. For systems with repulsive (i.e. positive) interaction potentials the experimental low temperature state and the ground state are effectively synonymous — and this fact is used in all modeling. In such cases, the leading term in the energy/particle is 2πħ2 aρ/m where a is the scattering length of the two-body potential. Owing to the delicate and peculiar nature of bosonic correlations (such as the strange N 7/5 law for charged bosons), four decades of research failed to establish this plausible formula rigorously. The only previous lower bound for the energy was found by Dyson in 1957, but it was 14 times too small. The correct asymptotic formula has been obtained by us and this work will be presented. The reason behind the mathematical difficulties will be emphasized. A different formula, postulated as late as 1971 by Schick, holds in two dimensions and this, too, will be shown to be correct. With the aid of the methodology developed to prove the lower bound for the homogeneous gas, several other problems have been successfully addressed. One is the proof by us that the Gross-Pitaevskii equation correctly describes the ground state in the ‘traps’ actually used in the experiments. For this system it is also possible to prove complete Bose condensation and superfluidity as we have shown. On the frontier of experimental developments is the possibility that a dilute gas in an elongated trap will behave like a one-dimensional system; we have proved this mathematically. Another topic is a proof that Foldy’s 1961 theory of a high density Bose gas of charged particles correctly describes its ground state energy; using this we can also prove the N 7/5 formula for the ground state energy of the two-component charged Bose gas proposed by Dyson in 1967. All of this is quite recent work and it is hoped that the mathematical methodology might be useful, ultimately, to solve more complex problems connected with these interesting systems.
alternative_title:
- Mathematical Physics Studies
author:
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
- first_name: Jakob
full_name: Yngvason, Jakob
last_name: Yngvason
citation:
ama: 'Lieb É, Seiringer R, Solovej J, Yngvason J. The quantum-mechanical many-body
problem: The Bose gas. In: Benedicks M, Jones P, Smirnov S, Winckler B, eds. Perspectives
in Analysis. Vol 27. Springer; 2005:97-183. doi:10.1007/3-540-30434-7_9'
apa: 'Lieb, É., Seiringer, R., Solovej, J., & Yngvason, J. (2005). The quantum-mechanical
many-body problem: The Bose gas. In M. Benedicks, P. Jones, S. Smirnov, &
B. Winckler (Eds.), Perspectives in Analysis (Vol. 27, pp. 97–183). Springer.
https://doi.org/10.1007/3-540-30434-7_9'
chicago: 'Lieb, Élliott, Robert Seiringer, Jan Solovej, and Jakob Yngvason. “The
Quantum-Mechanical Many-Body Problem: The Bose Gas.” In Perspectives in Analysis,
edited by Michael Benedicks, Peter Jones, Stanislav Smirnov, and Björn Winckler,
27:97–183. Springer, 2005. https://doi.org/10.1007/3-540-30434-7_9.'
ieee: 'É. Lieb, R. Seiringer, J. Solovej, and J. Yngvason, “The quantum-mechanical
many-body problem: The Bose gas,” in Perspectives in Analysis, vol. 27,
M. Benedicks, P. Jones, S. Smirnov, and B. Winckler, Eds. Springer, 2005, pp.
97–183.'
ista: 'Lieb É, Seiringer R, Solovej J, Yngvason J. 2005.The quantum-mechanical many-body
problem: The Bose gas. In: Perspectives in Analysis. Mathematical Physics Studies,
vol. 27, 97–183.'
mla: 'Lieb, Élliott, et al. “The Quantum-Mechanical Many-Body Problem: The Bose
Gas.” Perspectives in Analysis, edited by Michael Benedicks et al., vol.
27, Springer, 2005, pp. 97–183, doi:10.1007/3-540-30434-7_9.'
short: É. Lieb, R. Seiringer, J. Solovej, J. Yngvason, in:, M. Benedicks, P. Jones,
S. Smirnov, B. Winckler (Eds.), Perspectives in Analysis, Springer, 2005, pp.
97–183.
date_created: 2018-12-11T11:57:04Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:52Z
day: '01'
doi: 10.1007/3-540-30434-7_9
editor:
- first_name: Michael
full_name: Benedicks, Michael
last_name: Benedicks
- first_name: Peter
full_name: Jones, Peter W
last_name: Jones
- first_name: Stanislav
full_name: Smirnov, Stanislav
last_name: Smirnov
- first_name: Björn
full_name: Winckler, Björn
last_name: Winckler
extern: 1
intvolume: ' 27'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0405004
month: '01'
oa: 1
page: 97 - 183
publication: Perspectives in Analysis
publication_status: published
publisher: Springer
publist_id: '4590'
quality_controlled: 0
status: public
title: 'The quantum-mechanical many-body problem: The Bose gas'
type: book_chapter
volume: 27
year: '2005'
...
---
_id: '2359'
abstract:
- lang: eng
text: The validity of substituting a c-number z for the k = 0 mode operator a0 is
established rigorously in full generality, thereby verifying one aspect of Bogoliubov's
1947 theory. This substitution not only yields the correct value of thermodynamic
quantities such as the pressure or ground state energy, but also the value of
|z|2 that maximizes the partition function equals the true amount of condensation
in the presence of a gauge-symmetry-breaking term. This point had previously been
elusive.
author:
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jakob
full_name: Yngvason, Jakob
last_name: Yngvason
citation:
ama: Lieb É, Seiringer R, Yngvason J. Justification of c-number substitutions in
bosonic hamiltonians. Physical Review Letters. 2005;94(8). doi:10.1103/PhysRevLett.94.080401
apa: Lieb, É., Seiringer, R., & Yngvason, J. (2005). Justification of c-number
substitutions in bosonic hamiltonians. Physical Review Letters. American
Physical Society. https://doi.org/10.1103/PhysRevLett.94.080401
chicago: Lieb, Élliott, Robert Seiringer, and Jakob Yngvason. “Justification of
C-Number Substitutions in Bosonic Hamiltonians.” Physical Review Letters.
American Physical Society, 2005. https://doi.org/10.1103/PhysRevLett.94.080401.
ieee: É. Lieb, R. Seiringer, and J. Yngvason, “Justification of c-number substitutions
in bosonic hamiltonians,” Physical Review Letters, vol. 94, no. 8. American
Physical Society, 2005.
ista: Lieb É, Seiringer R, Yngvason J. 2005. Justification of c-number substitutions
in bosonic hamiltonians. Physical Review Letters. 94(8).
mla: Lieb, Élliott, et al. “Justification of C-Number Substitutions in Bosonic Hamiltonians.”
Physical Review Letters, vol. 94, no. 8, American Physical Society, 2005,
doi:10.1103/PhysRevLett.94.080401.
short: É. Lieb, R. Seiringer, J. Yngvason, Physical Review Letters 94 (2005).
date_created: 2018-12-11T11:57:12Z
date_published: 2005-03-04T00:00:00Z
date_updated: 2021-01-12T06:57:00Z
day: '04'
doi: 10.1103/PhysRevLett.94.080401
extern: 1
intvolume: ' 94'
issue: '8'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0412023
month: '03'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '4566'
quality_controlled: 0
status: public
title: Justification of c-number substitutions in bosonic hamiltonians
type: journal_article
volume: 94
year: '2005'
...
---
_id: '2362'
abstract:
- lang: eng
text: Recent developments in the physics of low-density trapped gases make it worthwhile
to verify old, well-known results that, while plausible, were based on perturbation
theory and assumptions about pseudopotentials. We use and extend recently developed
techniques to give a rigorous derivation of the asymptotic formula for the ground-state
energy of a dilute gas of N fermions interacting with a short-range, positive
potential of scattering length a. For spin-12 fermions, this is E∼E0+(22m)2πNa,
where E0 is the energy of the noninteracting system and is the density. A similar
formula holds in two dimensions (2D), with a replaced by ln(a2). Obviously this
2D energy is not the expectation value of a density-independent pseudopotential.
author:
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
citation:
ama: Lieb É, Seiringer R, Solovej J. Ground state energy of the low density Fermi
gas. Physical Review A - Atomic, Molecular, and Optical Physics. 2005;71(5).
doi:10.1103/PhysRevA.71.053605
apa: Lieb, É., Seiringer, R., & Solovej, J. (2005). Ground state energy of the
low density Fermi gas. Physical Review A - Atomic, Molecular, and Optical Physics.
American Physical Society. https://doi.org/10.1103/PhysRevA.71.053605
chicago: Lieb, Élliott, Robert Seiringer, and Jan Solovej. “Ground State Energy
of the Low Density Fermi Gas.” Physical Review A - Atomic, Molecular, and Optical
Physics. American Physical Society, 2005. https://doi.org/10.1103/PhysRevA.71.053605.
ieee: É. Lieb, R. Seiringer, and J. Solovej, “Ground state energy of the low density
Fermi gas,” Physical Review A - Atomic, Molecular, and Optical Physics,
vol. 71, no. 5. American Physical Society, 2005.
ista: Lieb É, Seiringer R, Solovej J. 2005. Ground state energy of the low density
Fermi gas. Physical Review A - Atomic, Molecular, and Optical Physics. 71(5).
mla: Lieb, Élliott, et al. “Ground State Energy of the Low Density Fermi Gas.” Physical
Review A - Atomic, Molecular, and Optical Physics, vol. 71, no. 5, American
Physical Society, 2005, doi:10.1103/PhysRevA.71.053605.
short: É. Lieb, R. Seiringer, J. Solovej, Physical Review A - Atomic, Molecular,
and Optical Physics 71 (2005).
date_created: 2018-12-11T11:57:13Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T06:57:01Z
day: '01'
doi: 10.1103/PhysRevA.71.053605
extern: 1
intvolume: ' 71'
issue: '5'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0412080
month: '05'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4565'
quality_controlled: 0
status: public
title: Ground state energy of the low density Fermi gas
type: journal_article
volume: 71
year: '2005'
...
---
_id: '2361'
abstract:
- lang: eng
text: The strong subadditivity of entropy plays a key role in several areas of physics
and mathematics. It states that the entropy S[±]=- Tr(ϱlnϱ) of a density matrix
ϱ123 on the product of three Hilbert spaces satisfies S[ϱ123]- S[ϱ12]≤S[ϱ23]-S[ϱ2].
We strengthen this to S[ϱ123]-S[ϱ12] ≤αnα(S[ϱ23α]-S[ϱ2α]), where the nα are
weights and the ϱ23α are partitions of ϱ23. Correspondingly, there is a strengthening
of the theorem that the map A|Trexp[L+lnA] is concave. As applications we prove
some monotonicity and convexity properties of the Wehrl coherent state entropy
and entropy inequalities for quantum gases.
author:
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Lieb É, Seiringer R. Stronger subadditivity of entropy. Physical Review
A - Atomic, Molecular, and Optical Physics. 2005;71(6). doi:10.1103/PhysRevA.71.062329
apa: Lieb, É., & Seiringer, R. (2005). Stronger subadditivity of entropy. Physical
Review A - Atomic, Molecular, and Optical Physics. American Physical Society.
https://doi.org/10.1103/PhysRevA.71.062329
chicago: Lieb, Élliott, and Robert Seiringer. “Stronger Subadditivity of Entropy.”
Physical Review A - Atomic, Molecular, and Optical Physics. American Physical
Society, 2005. https://doi.org/10.1103/PhysRevA.71.062329.
ieee: É. Lieb and R. Seiringer, “Stronger subadditivity of entropy,” Physical
Review A - Atomic, Molecular, and Optical Physics, vol. 71, no. 6. American
Physical Society, 2005.
ista: Lieb É, Seiringer R. 2005. Stronger subadditivity of entropy. Physical Review
A - Atomic, Molecular, and Optical Physics. 71(6).
mla: Lieb, Élliott, and Robert Seiringer. “Stronger Subadditivity of Entropy.” Physical
Review A - Atomic, Molecular, and Optical Physics, vol. 71, no. 6, American
Physical Society, 2005, doi:10.1103/PhysRevA.71.062329.
short: É. Lieb, R. Seiringer, Physical Review A - Atomic, Molecular, and Optical
Physics 71 (2005).
date_created: 2018-12-11T11:57:13Z
date_published: 2005-06-01T00:00:00Z
date_updated: 2021-01-12T06:57:01Z
day: '01'
doi: 10.1103/PhysRevA.71.062329
extern: 1
intvolume: ' 71'
issue: '6'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0412009
month: '06'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4564'
quality_controlled: 0
status: public
title: Stronger subadditivity of entropy
type: journal_article
volume: 71
year: '2005'
...
---
_id: '2428'
abstract:
- lang: eng
text: We consider an online version of the conflict-free coloring of a set of points
on the line, where each newly inserted point must be assigned a color upon insertion,
and at all times the coloring has to be conflict-free, in the sense that in every
interval I there is a color that appears exactly once in I. We present several
deterministic and randomized algorithms for achieving this goal, and analyze their
performance, that is, the maximum number of colors that they need to use, as a
function of the number n of inserted points. We first show that a natural and
simple (deterministic) approach may perform rather poorly, requiring Ω(√n) colors
in the worst case. We then modify this approach, to obtain an efficient deterministic
algorithm that uses a maximum of Θ(log 2 n) colors. Next, we present two randomized
solutions. The first algorithm requires an expected number of at most O(log 2
n) colors, and produces a coloring which is valid with high probability, and the
second one, which is a variant of our efficient deterministic algorithm, requires
an expected number of at most O(log n log log n) colors but always produces a
valid coloring. We also analyze the performance of the simplest proposed algorithm
when the points are inserted in a random order, and present an incomplete analysis
that indicates that, with high probability, it uses only O(log n) colors. Finally,
we show that in the extension of this problem to two dimensions, where the relevant
ranges are disks, n colors may be required in the worst case. The average-case
behavior for disks, and cases involving other planar ranges, are still open.
author:
- first_name: Amos
full_name: Fiat, Amos
last_name: Fiat
- first_name: Meital
full_name: Levy, Meital B
last_name: Levy
- first_name: Jiří
full_name: Matoušek, Jiří
last_name: Matoušek
- first_name: Elchanan
full_name: Pach, Elchanan M
last_name: Pach
- first_name: Micha
full_name: Sharir, Micha
last_name: Sharir
- first_name: Shakhar
full_name: Smorodinsky, Shakhar
last_name: Smorodinsky
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
- first_name: Emo
full_name: Welzl, Emo
last_name: Welzl
citation:
ama: 'Fiat A, Levy M, Matoušek J, et al. Online conflict-free coloring for intervals.
In: SIAM; 2005:545-554. doi:10.1137/S0097539704446682'
apa: 'Fiat, A., Levy, M., Matoušek, J., Pach, E., Sharir, M., Smorodinsky, S., …
Welzl, E. (2005). Online conflict-free coloring for intervals (pp. 545–554). Presented
at the SODA: Symposium on Discrete Algorithms, SIAM. https://doi.org/10.1137/S0097539704446682'
chicago: Fiat, Amos, Meital Levy, Jiří Matoušek, Elchanan Pach, Micha Sharir, Shakhar
Smorodinsky, Uli Wagner, and Emo Welzl. “Online Conflict-Free Coloring for Intervals,”
545–54. SIAM, 2005. https://doi.org/10.1137/S0097539704446682.
ieee: 'A. Fiat et al., “Online conflict-free coloring for intervals,” presented
at the SODA: Symposium on Discrete Algorithms, 2005, pp. 545–554.'
ista: 'Fiat A, Levy M, Matoušek J, Pach E, Sharir M, Smorodinsky S, Wagner U, Welzl
E. 2005. Online conflict-free coloring for intervals. SODA: Symposium on Discrete
Algorithms, 545–554.'
mla: Fiat, Amos, et al. Online Conflict-Free Coloring for Intervals. SIAM,
2005, pp. 545–54, doi:10.1137/S0097539704446682.
short: A. Fiat, M. Levy, J. Matoušek, E. Pach, M. Sharir, S. Smorodinsky, U. Wagner,
E. Welzl, in:, SIAM, 2005, pp. 545–554.
conference:
name: 'SODA: Symposium on Discrete Algorithms'
date_created: 2018-12-11T11:57:36Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:25Z
day: '01'
doi: 10.1137/S0097539704446682
extern: 1
month: '01'
page: 545 - 554
publication_status: published
publisher: SIAM
publist_id: '4496'
quality_controlled: 0
status: public
title: Online conflict-free coloring for intervals
type: conference
year: '2005'
...
---
_id: '2427'
abstract:
- lang: eng
text: Intersection graphs of disks and of line segments, respectively, have been
well studied, because of both practical applications and theoretically interesting
properties of these graphs. Despite partial results, the complexity status of
the Clique problem for these two graph classes is still open. Here, we consider
the Clique problem for intersection graphs of ellipses, which, in a sense, interpolate
between disks and line segments, and show that the problem is APX-hard in that
case. Moreover, this holds even if for all ellipses, the ratio of the larger over
the smaller radius is some prescribed number. Furthermore, the reduction immediately
carries over to intersection graphs of triangles. To our knowledge, this is the
first hardness result for the Clique problem in intersection graphs of convex
objects with finite description complexity. We also describe a simple approximation
algorithm for the case of ellipses for which the ratio of radii is bounded.
author:
- first_name: Christoph
full_name: Ambühl, Christoph
last_name: Ambühl
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: Ambühl C, Wagner U. The Clique problem in intersection graphs of ellipses and
triangles. Theory of Computing Systems. 2005;38(3):279-292. doi:10.1007/s00224-005-1141-6
apa: Ambühl, C., & Wagner, U. (2005). The Clique problem in intersection graphs
of ellipses and triangles. Theory of Computing Systems. Springer. https://doi.org/10.1007/s00224-005-1141-6
chicago: Ambühl, Christoph, and Uli Wagner. “The Clique Problem in Intersection
Graphs of Ellipses and Triangles.” Theory of Computing Systems. Springer,
2005. https://doi.org/10.1007/s00224-005-1141-6.
ieee: C. Ambühl and U. Wagner, “The Clique problem in intersection graphs of ellipses
and triangles,” Theory of Computing Systems, vol. 38, no. 3. Springer,
pp. 279–292, 2005.
ista: Ambühl C, Wagner U. 2005. The Clique problem in intersection graphs of ellipses
and triangles. Theory of Computing Systems. 38(3), 279–292.
mla: Ambühl, Christoph, and Uli Wagner. “The Clique Problem in Intersection Graphs
of Ellipses and Triangles.” Theory of Computing Systems, vol. 38, no. 3,
Springer, 2005, pp. 279–92, doi:10.1007/s00224-005-1141-6.
short: C. Ambühl, U. Wagner, Theory of Computing Systems 38 (2005) 279–292.
date_created: 2018-12-11T11:57:36Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T06:57:25Z
day: '01'
doi: 10.1007/s00224-005-1141-6
extern: 1
intvolume: ' 38'
issue: '3'
month: '05'
page: 279 - 292
publication: Theory of Computing Systems
publication_status: published
publisher: Springer
publist_id: '4497'
quality_controlled: 0
status: public
title: The Clique problem in intersection graphs of ellipses and triangles
type: journal_article
volume: 38
year: '2005'
...
---
_id: '2455'
abstract:
- lang: eng
text: Local accumulation of the plant growth regulator auxin mediates pattern formation
in Arabidopsis roots and influences outgrowth and development of lateral root-
and shoot-derived primordia. However, it has remained unclear how auxin can simultaneously
regulate patterning and organ outgrowth and how its distribution is stabilized
in a primordium-specif ic manner. Here we show that five PIN genes collectively
control auxin distribution to regulate cell division and cell expansion in the
primary root. Furthermore, the joint action of these genes has an important role
in pattern formation by focusing the auxin maximum and restricting the expression
domain of PLETHORA (PLT) genes, major determinants for root stem cell specification.
In turn, PLT genes are required for PIN gene transcription to stabilize the auxin
maximum at the distal root tip. Our data reveal an interaction network of auxin
transport facilitators and root fate determinants that control patterning and
growth of the root primordium.
author:
- first_name: Ikram
full_name: Billou, Ikram
last_name: Billou
- first_name: Jian
full_name: Xu, Jian
last_name: Xu
- first_name: Marjolein
full_name: Wildwater, Marjolein
last_name: Wildwater
- first_name: Viola
full_name: Willemsen, Viola
last_name: Willemsen
- first_name: Ivan
full_name: Paponov, Ivan A
last_name: Paponov
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Renze
full_name: Heldstra, Renze
last_name: Heldstra
- first_name: Mitsuhiro
full_name: Aida, Mitsuhiro
last_name: Aida
- first_name: Klaus
full_name: Palme, Klaus J
last_name: Palme
- first_name: Ben
full_name: Scheres, Ben
last_name: Scheres
citation:
ama: Billou I, Xu J, Wildwater M, et al. The PIN auxin efflux facilitator network
controls growth and patterning in Arabidopsis roots. Nature. 2005;433(7021):39-44.
doi:10.1038/nature03184
apa: Billou, I., Xu, J., Wildwater, M., Willemsen, V., Paponov, I., Friml, J., …
Scheres, B. (2005). The PIN auxin efflux facilitator network controls growth and
patterning in Arabidopsis roots. Nature. Nature Publishing Group. https://doi.org/10.1038/nature03184
chicago: Billou, Ikram, Jian Xu, Marjolein Wildwater, Viola Willemsen, Ivan Paponov,
Jiří Friml, Renze Heldstra, Mitsuhiro Aida, Klaus Palme, and Ben Scheres. “The
PIN Auxin Efflux Facilitator Network Controls Growth and Patterning in Arabidopsis
Roots.” Nature. Nature Publishing Group, 2005. https://doi.org/10.1038/nature03184.
ieee: I. Billou et al., “The PIN auxin efflux facilitator network controls
growth and patterning in Arabidopsis roots,” Nature, vol. 433, no. 7021.
Nature Publishing Group, pp. 39–44, 2005.
ista: Billou I, Xu J, Wildwater M, Willemsen V, Paponov I, Friml J, Heldstra R,
Aida M, Palme K, Scheres B. 2005. The PIN auxin efflux facilitator network controls
growth and patterning in Arabidopsis roots. Nature. 433(7021), 39–44.
mla: Billou, Ikram, et al. “The PIN Auxin Efflux Facilitator Network Controls Growth
and Patterning in Arabidopsis Roots.” Nature, vol. 433, no. 7021, Nature
Publishing Group, 2005, pp. 39–44, doi:10.1038/nature03184.
short: I. Billou, J. Xu, M. Wildwater, V. Willemsen, I. Paponov, J. Friml, R. Heldstra,
M. Aida, K. Palme, B. Scheres, Nature 433 (2005) 39–44.
date_created: 2018-12-11T11:57:46Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:35Z
day: '01'
doi: 10.1038/nature03184
extern: 1
intvolume: ' 433'
issue: '7021'
month: '01'
page: 39 - 44
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '4448'
quality_controlled: 0
status: public
title: The PIN auxin efflux facilitator network controls growth and patterning in
Arabidopsis roots
type: journal_article
volume: 433
year: '2005'
...
---
_id: '2464'
alternative_title:
- Annual Plant Reviews
author:
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Justyna
full_name: Wiśniewska, Justyna
last_name: Wiśniewska
citation:
ama: 'Friml J, Wiśniewska J. Auxin as an intercellular signal. In: Fleming A, ed.
Intercellular Communication in Plants. Vol 16. Wiley-Blackwell; 2005.'
apa: Friml, J., & Wiśniewska, J. (2005). Auxin as an intercellular signal. In
A. Fleming (Ed.), Intercellular Communication in Plants (Vol. 16). Wiley-Blackwell.
chicago: Friml, Jiří, and Justyna Wiśniewska. “Auxin as an Intercellular Signal.”
In Intercellular Communication in Plants, edited by Andrew Fleming, Vol.
16. Wiley-Blackwell, 2005.
ieee: J. Friml and J. Wiśniewska, “Auxin as an intercellular signal,” in Intercellular
Communication in Plants, vol. 16, A. Fleming, Ed. Wiley-Blackwell, 2005.
ista: 'Friml J, Wiśniewska J. 2005.Auxin as an intercellular signal. In: Intercellular
Communication in Plants. Annual Plant Reviews, vol. 16.'
mla: Friml, Jiří, and Justyna Wiśniewska. “Auxin as an Intercellular Signal.” Intercellular
Communication in Plants, edited by Andrew Fleming, vol. 16, Wiley-Blackwell,
2005.
short: J. Friml, J. Wiśniewska, in:, A. Fleming (Ed.), Intercellular Communication
in Plants, Wiley-Blackwell, 2005.
date_created: 2018-12-11T11:57:49Z
date_published: 2005-01-13T00:00:00Z
date_updated: 2021-01-12T06:57:38Z
day: '13'
editor:
- first_name: Andrew
full_name: Fleming, Andrew J.
last_name: Fleming
extern: 1
intvolume: ' 16'
month: '01'
publication: Intercellular Communication in Plants
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4439'
quality_controlled: 0
status: public
title: Auxin as an intercellular signal
type: book_chapter
volume: 16
year: '2005'
...
---
_id: '2463'
author:
- first_name: J
full_name: Dubová, J
last_name: Dubová
- first_name: Jan
full_name: Hejátko, Jan
last_name: Hejátko
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Dubová J, Hejátko J, Friml J. Reproduction, plants. In: Meyers R, ed. Encyclopedia
of Molecular Cell Biology and Molecular Medicine. Vol 12. Wiley-Blackwell;
2005:249-295. doi:10.1002/3527600906'
apa: Dubová, J., Hejátko, J., & Friml, J. (2005). Reproduction, plants. In R.
Meyers (Ed.), Encyclopedia of Molecular Cell Biology and Molecular Medicine
(Vol. 12, pp. 249–295). Wiley-Blackwell. https://doi.org/10.1002/3527600906
chicago: Dubová, J, Jan Hejátko, and Jiří Friml. “Reproduction, Plants.” In Encyclopedia
of Molecular Cell Biology and Molecular Medicine, edited by Robert Meyers,
12:249–95. Wiley-Blackwell, 2005. https://doi.org/10.1002/3527600906.
ieee: J. Dubová, J. Hejátko, and J. Friml, “Reproduction, plants,” in Encyclopedia
of Molecular Cell Biology and Molecular Medicine, vol. 12, R. Meyers, Ed.
Wiley-Blackwell, 2005, pp. 249–295.
ista: 'Dubová J, Hejátko J, Friml J. 2005.Reproduction, plants. In: Encyclopedia
of Molecular Cell Biology and Molecular Medicine. vol. 12, 249–295.'
mla: Dubová, J., et al. “Reproduction, Plants.” Encyclopedia of Molecular Cell
Biology and Molecular Medicine, edited by Robert Meyers, vol. 12, Wiley-Blackwell,
2005, pp. 249–95, doi:10.1002/3527600906.
short: J. Dubová, J. Hejátko, J. Friml, in:, R. Meyers (Ed.), Encyclopedia of Molecular
Cell Biology and Molecular Medicine, Wiley-Blackwell, 2005, pp. 249–295.
date_created: 2018-12-11T11:57:48Z
date_published: 2005-10-28T00:00:00Z
date_updated: 2021-01-12T06:57:38Z
day: '28'
doi: 10.1002/3527600906
editor:
- first_name: Robert
full_name: Meyers, Robert A
last_name: Meyers
extern: 1
intvolume: ' 12'
month: '10'
page: 249 - 295
publication: Encyclopedia of Molecular Cell Biology and Molecular Medicine
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4440'
quality_controlled: 0
status: public
title: Reproduction, plants
type: book_chapter
volume: 12
year: '2005'
...
---
_id: '2648'
abstract:
- lang: eng
text: Hyperpolarization-activated and cyclic nucleotide-gated (HCN) channels are
involved in the control of neuronal excitability and plasticity. In this study,
we used immunoblotting and immunohistochemical techniques to reveal the developmental
expression and subcellular distribution of the HCN1 subunit in the cerebellar
cortex. During postnatal development, the spatio-temporal expression of HCN1 correlated
well with the morphological events occurring during the ontogenesis of cerebellar
interneurons. Using immunoblotting techniques, HCN1 was weakly detected during
the first postnatal week and continued to increase throughout postnatal development,
peaking at postnatal day (P)15. At the light-microscopic level, HCN1 immunoreactivity
was very weak until P7 whereas from P10-12 to adulthood it was strongly detected
in the lower third of the molecular layer and in the Purkinje cell layer. HCN1
was present in axons running through the molecular layer and in the pericellular
basket around Purkinje cells at P12, but in the periaxonal plexus (the pinceau)
surrounding their initial segment only after P15. Using immunofluorescence, HCN1
colocalized with GAD65 and synaptophysin, demonstrating that the subunit was present
in inhibitory axons and axon terminals. At the electron-microscopic level, in
adulthood, HCN1 immunoparticles were detected at postsynaptic sites in basket
and Purkinje cells but most immunoparticles were found at presynaptic sites in
basket cell axons and in terminals. In the axon terminals, the distribution of
HCN1 was relatively uniform along the extrasynaptic plasma membrane; this was
confirmed using quantitative techniques. The present findings suggest that HCN1
channels may provide a significant route for modulating co-ordinated cerebellar
synaptic transmission through basket cells.
author:
- first_name: Rafael
full_name: Luján, Rafael
last_name: Luján
- first_name: José
full_name: Albasanz, José L
last_name: Albasanz
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: José
full_name: Juíz, José M
last_name: Juíz
citation:
ama: Luján R, Albasanz J, Shigemoto R, Juíz J. Preferential localization of the
hyperpolarization-activated cyclic nucleotide-gated cation channel subunit HCN1
in basket cell terminals of the rat cerebellum. European Journal of Neuroscience.
2005;21(8):2073-2082. doi:10.1111/j.1460-9568.2005.04043.x
apa: Luján, R., Albasanz, J., Shigemoto, R., & Juíz, J. (2005). Preferential
localization of the hyperpolarization-activated cyclic nucleotide-gated cation
channel subunit HCN1 in basket cell terminals of the rat cerebellum. European
Journal of Neuroscience. Wiley-Blackwell. https://doi.org/10.1111/j.1460-9568.2005.04043.x
chicago: Luján, Rafael, José Albasanz, Ryuichi Shigemoto, and José Juíz. “Preferential
Localization of the Hyperpolarization-Activated Cyclic Nucleotide-Gated Cation
Channel Subunit HCN1 in Basket Cell Terminals of the Rat Cerebellum.” European
Journal of Neuroscience. Wiley-Blackwell, 2005. https://doi.org/10.1111/j.1460-9568.2005.04043.x.
ieee: R. Luján, J. Albasanz, R. Shigemoto, and J. Juíz, “Preferential localization
of the hyperpolarization-activated cyclic nucleotide-gated cation channel subunit
HCN1 in basket cell terminals of the rat cerebellum,” European Journal of Neuroscience,
vol. 21, no. 8. Wiley-Blackwell, pp. 2073–2082, 2005.
ista: Luján R, Albasanz J, Shigemoto R, Juíz J. 2005. Preferential localization
of the hyperpolarization-activated cyclic nucleotide-gated cation channel subunit
HCN1 in basket cell terminals of the rat cerebellum. European Journal of Neuroscience.
21(8), 2073–2082.
mla: Luján, Rafael, et al. “Preferential Localization of the Hyperpolarization-Activated
Cyclic Nucleotide-Gated Cation Channel Subunit HCN1 in Basket Cell Terminals of
the Rat Cerebellum.” European Journal of Neuroscience, vol. 21, no. 8,
Wiley-Blackwell, 2005, pp. 2073–82, doi:10.1111/j.1460-9568.2005.04043.x.
short: R. Luján, J. Albasanz, R. Shigemoto, J. Juíz, European Journal of Neuroscience
21 (2005) 2073–2082.
date_created: 2018-12-11T11:58:52Z
date_published: 2005-04-01T00:00:00Z
date_updated: 2021-01-12T06:58:48Z
day: '01'
doi: 10.1111/j.1460-9568.2005.04043.x
extern: 1
intvolume: ' 21'
issue: '8'
month: '04'
page: 2073 - 2082
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4248'
quality_controlled: 0
status: public
title: Preferential localization of the hyperpolarization-activated cyclic nucleotide-gated
cation channel subunit HCN1 in basket cell terminals of the rat cerebellum
type: journal_article
volume: 21
year: '2005'
...
---
_id: '2650'
abstract:
- lang: eng
text: 'Septohippocampal cholinergic neurons play key roles in learning and memory
processes, and in the generation of hippocampal theta rhythm. The range of receptors
for endogenous modulators expressed on these neurons is unclear. Here we describe
GABAB 1a/b receptor (GABABR) and type 1 cannabinoid receptor (CB1R) expression
in rat septal cholinergic [i.e. choline acetyltransferase (ChAT)-positive] cells.
Using double immunofluorescent staining, we found that almost two-thirds of the
cholinergic cells in the rat medial septum were GABABR positive, and that these
cells had significantly larger somata than did GABABR-negative cholinergic neurons.
We detected CB1R labelling in somata after axonal protein transport was blocked
by colchicine. In these animals about one-third of the cholinergic cells were
CB1R positive. These cells again had larger somata than CB1R-negative cholinergic
neurons. The analyses confirmed that the size of GABABR-positive and CB 1R-positive
cholinergic cells were alike, and all CB 1R-positive cholinergic cells were GABABR
positive as well. CB1R-positive cells were invariably ChAT positive. All retrogradely
labelled septohippocampal cholinergic cells were positive for GABABR and at least
half of them also for CB1R. These data shed light on the existence of at least
two cholinergic cell types in the medial septum: one expresses GABABR and CB1R,
has large somata and projects to the hippocampus, whereas the other is negative
for GABABR and CB1R and has smaller somata. The results also suggest that cholinergic
transmission in the hippocampus is fine-tuned by endocannabinoid signalling.'
author:
- first_name: Gábor
full_name: Nyíri, Gábor
last_name: Nyíri
- first_name: Eszter
full_name: Szabadits, Eszter
last_name: Szabadits
- first_name: Csaba
full_name: Cserép, Csaba
last_name: Cserép
- first_name: Ken
full_name: Mackie, Ken P
last_name: Mackie
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Tamás
full_name: Freund, Tamás F
last_name: Freund
citation:
ama: Nyíri G, Szabadits E, Cserép C, Mackie K, Shigemoto R, Freund T. GABAB and
CB1 cannabinoid receptor expression identifies two types of septal cholinergic
neurons. European Journal of Neuroscience. 2005;21(11):3034-3042. doi:10.1111/j.1460-9568.2005.04146.x
apa: Nyíri, G., Szabadits, E., Cserép, C., Mackie, K., Shigemoto, R., & Freund,
T. (2005). GABAB and CB1 cannabinoid receptor expression identifies two types
of septal cholinergic neurons. European Journal of Neuroscience. Wiley-Blackwell.
https://doi.org/10.1111/j.1460-9568.2005.04146.x
chicago: Nyíri, Gábor, Eszter Szabadits, Csaba Cserép, Ken Mackie, Ryuichi Shigemoto,
and Tamás Freund. “GABAB and CB1 Cannabinoid Receptor Expression Identifies Two
Types of Septal Cholinergic Neurons.” European Journal of Neuroscience.
Wiley-Blackwell, 2005. https://doi.org/10.1111/j.1460-9568.2005.04146.x.
ieee: G. Nyíri, E. Szabadits, C. Cserép, K. Mackie, R. Shigemoto, and T. Freund,
“GABAB and CB1 cannabinoid receptor expression identifies two types of septal
cholinergic neurons,” European Journal of Neuroscience, vol. 21, no. 11.
Wiley-Blackwell, pp. 3034–3042, 2005.
ista: Nyíri G, Szabadits E, Cserép C, Mackie K, Shigemoto R, Freund T. 2005. GABAB
and CB1 cannabinoid receptor expression identifies two types of septal cholinergic
neurons. European Journal of Neuroscience. 21(11), 3034–3042.
mla: Nyíri, Gábor, et al. “GABAB and CB1 Cannabinoid Receptor Expression Identifies
Two Types of Septal Cholinergic Neurons.” European Journal of Neuroscience,
vol. 21, no. 11, Wiley-Blackwell, 2005, pp. 3034–42, doi:10.1111/j.1460-9568.2005.04146.x.
short: G. Nyíri, E. Szabadits, C. Cserép, K. Mackie, R. Shigemoto, T. Freund, European
Journal of Neuroscience 21 (2005) 3034–3042.
date_created: 2018-12-11T11:58:52Z
date_published: 2005-06-01T00:00:00Z
date_updated: 2021-01-12T06:58:49Z
day: '01'
doi: 10.1111/j.1460-9568.2005.04146.x
extern: 1
intvolume: ' 21'
issue: '11'
month: '06'
page: 3034 - 3042
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4247'
quality_controlled: 0
status: public
title: GABAB and CB1 cannabinoid receptor expression identifies two types of septal
cholinergic neurons
type: journal_article
volume: 21
year: '2005'
...
---
_id: '2647'
abstract:
- lang: eng
text: 'Our understanding of the role played by neurotransmitter receptors in the
developing brain has advanced in recent years. The major excitatory and inhibitory
neurotransmitters in the brain, glutamate and GABA, activate both ionotropic (ligand-gated
ion channels) and metabotropic (G protein-coupled) receptors, and are generally
associated with neuronal communication in the mature brain. However, before the
emergence of their role in neurotransmission in adulthood, they also act to influence
earlier developmental events, some of which occur prior to synapse formation:
such as proliferation, migration, differentiation or survival processes during
neural development. To fulfill these actions in the constructing of the nervous
system, different types of glutamate and GABA receptors need to be expressed both
at the right time and at the right place. The identification by molecular cloning
of 16 ionotropic glutamate receptor subunits, eight metabotropic glutamate receptor
subtypes, 21 ionotropic and two metabotropic GABA receptor subunits, some of which
exist in alternatively splice variants, has enriched our appreciation of how molecular
diversity leads to functional diversity in the brain. It now appears that many
different types of glutamate and GABA receptor subunits have prominent expression
in the embryonic and/or postnatal brain, whereas others are mainly present in
the adult brain. Although the significance of this differential expression of
subunits is not fully understood, it appears that the change in subunit composition
is essential for normal development in particular brain regions. This review focuses
on emerging information relating to the expression and role of glutamatergic and
GABAergic neurotransmitter receptors during prenatal and postnatal development.'
author:
- first_name: Rafael
full_name: Luján, Rafael
last_name: Luján
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Guillermina
full_name: López-Bendito, Guillermina
last_name: López Bendito
citation:
ama: Luján R, Shigemoto R, López Bendito G. Glutamate and GABA receptor signalling
in the developing brain. Neuroscience. 2005;130(3):567-580. doi:10.1016/j.neuroscience.2004.09.042
apa: Luján, R., Shigemoto, R., & López Bendito, G. (2005). Glutamate and GABA
receptor signalling in the developing brain. Neuroscience. Elsevier. https://doi.org/10.1016/j.neuroscience.2004.09.042
chicago: Luján, Rafael, Ryuichi Shigemoto, and Guillermina López Bendito. “Glutamate
and GABA Receptor Signalling in the Developing Brain.” Neuroscience. Elsevier,
2005. https://doi.org/10.1016/j.neuroscience.2004.09.042.
ieee: R. Luján, R. Shigemoto, and G. López Bendito, “Glutamate and GABA receptor
signalling in the developing brain,” Neuroscience, vol. 130, no. 3. Elsevier,
pp. 567–580, 2005.
ista: Luján R, Shigemoto R, López Bendito G. 2005. Glutamate and GABA receptor signalling
in the developing brain. Neuroscience. 130(3), 567–580.
mla: Luján, Rafael, et al. “Glutamate and GABA Receptor Signalling in the Developing
Brain.” Neuroscience, vol. 130, no. 3, Elsevier, 2005, pp. 567–80, doi:10.1016/j.neuroscience.2004.09.042.
short: R. Luján, R. Shigemoto, G. López Bendito, Neuroscience 130 (2005) 567–580.
date_created: 2018-12-11T11:58:51Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2020-07-14T12:45:44Z
day: '01'
doi: 10.1016/j.neuroscience.2004.09.042
extern: 1
intvolume: ' 130'
issue: '3'
month: '01'
page: 567 - 580
publication: Neuroscience
publication_status: published
publisher: Elsevier
publist_id: '4250'
quality_controlled: 0
status: public
title: Glutamate and GABA receptor signalling in the developing brain
type: review
volume: 130
year: '2005'
...
---
_id: '2651'
abstract:
- lang: eng
text: The GABAergic system, a major inhibitory regulator in the central nervous
system, may also play important roles in peripheral nonneuronal tissues and cells.
Recent studies showed that GABAB receptor is expressed in testis and sperm. To
understand the role of the GABAergic system in spermiogenesis, we examined cellular
localization of GABA and GABAB receptor subunits in rat spermatids by immunocytochemistry.
Immunoreactivity for GABA was detected around acrosomal granules of spermatids
during the Golgi and cap phases. GABAB(1) immunoreactivity was observed in the
acrosomal vesicle of spermatids in Golgi phase, and during cap phase, this reactivity
expanded to the entire region of the acrosome covering the nuclear membrane. The
level of reactivity decreased gradually with maturation of spermatids. In contrast,
GABAB(2) immunoreactivity was not observed in spermatids during Golgi phase but
was detected in the equatorial region during cap phase. Both GABA immunoreactivity
and GABAB(2) immunoreactivity were transferred to the residual cytoplasm during
the release of spermatozoa. Electron microscopic immunocytochemistry revealed
that, during cap phase, GABA and GABAB(1) were distributed within the whole acrosomal
vesicle but not in the acrosomal granule. GABAB(2) immunoreactivity was observed
in the narrow space between the inner acrosomal and nuclear membrane and was limited
to the equatorial region of the spermatid head. These results indicate that the
GABAergic system might be involved in regulation of spermiogenesis.
author:
- first_name: Kiyoto
full_name: Kanbara, Kiyoto
last_name: Kanbara
- first_name: Keiko
full_name: Okamoto, Keiko
last_name: Okamoto
- first_name: Sakashi
full_name: Nomura, Sakashi
last_name: Nomura
- first_name: Takeshi
full_name: Kaneko, Takeshi
last_name: Kaneko
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Haruhito
full_name: Azuma, Haruhito
last_name: Azuma
- first_name: Yoji
full_name: Katsuoka, Yoji
last_name: Katsuoka
- first_name: Masahiko
full_name: Watanabe, Masahiko
last_name: Watanabe
citation:
ama: Kanbara K, Okamoto K, Nomura S, et al. Cellular localization of GABA and GABAB
receptor subunit proteins during spermiogenesis in rat testis. Journal of Andrology.
2005;26(4):485-493. doi:10.2164/jandrol.04185
apa: Kanbara, K., Okamoto, K., Nomura, S., Kaneko, T., Shigemoto, R., Azuma, H.,
… Watanabe, M. (2005). Cellular localization of GABA and GABAB receptor subunit
proteins during spermiogenesis in rat testis. Journal of Andrology. American
Society of Andrology. https://doi.org/10.2164/jandrol.04185
chicago: Kanbara, Kiyoto, Keiko Okamoto, Sakashi Nomura, Takeshi Kaneko, Ryuichi
Shigemoto, Haruhito Azuma, Yoji Katsuoka, and Masahiko Watanabe. “Cellular Localization
of GABA and GABAB Receptor Subunit Proteins during Spermiogenesis in Rat Testis.”
Journal of Andrology. American Society of Andrology, 2005. https://doi.org/10.2164/jandrol.04185.
ieee: K. Kanbara et al., “Cellular localization of GABA and GABAB receptor
subunit proteins during spermiogenesis in rat testis,” Journal of Andrology,
vol. 26, no. 4. American Society of Andrology, pp. 485–493, 2005.
ista: Kanbara K, Okamoto K, Nomura S, Kaneko T, Shigemoto R, Azuma H, Katsuoka Y,
Watanabe M. 2005. Cellular localization of GABA and GABAB receptor subunit proteins
during spermiogenesis in rat testis. Journal of Andrology. 26(4), 485–493.
mla: Kanbara, Kiyoto, et al. “Cellular Localization of GABA and GABAB Receptor Subunit
Proteins during Spermiogenesis in Rat Testis.” Journal of Andrology, vol.
26, no. 4, American Society of Andrology, 2005, pp. 485–93, doi:10.2164/jandrol.04185.
short: K. Kanbara, K. Okamoto, S. Nomura, T. Kaneko, R. Shigemoto, H. Azuma, Y.
Katsuoka, M. Watanabe, Journal of Andrology 26 (2005) 485–493.
date_created: 2018-12-11T11:58:52Z
date_published: 2005-07-01T00:00:00Z
date_updated: 2021-01-12T06:58:50Z
day: '01'
doi: 10.2164/jandrol.04185
extern: 1
intvolume: ' 26'
issue: '4'
month: '07'
page: 485 - 493
publication: Journal of Andrology
publication_status: published
publisher: American Society of Andrology
publist_id: '4246'
quality_controlled: 0
status: public
title: Cellular localization of GABA and GABAB receptor subunit proteins during spermiogenesis
in rat testis
type: journal_article
volume: 26
year: '2005'
...
---
_id: '2649'
abstract:
- lang: eng
text: The number of ionotropic receptors in synapses is an essential factor for
determining the efficacy of fast transmission. We estimated the number of functional
AMPA receptors at single postsynaptic sites by a combination of two-photon uncaging
of glutamate and the nonstationary fluctuation analysis in immature rat Purkinje
cells (PCs), which receive a single type of excitatory input from climbing fibers.
Areas of postsynaptic membrane specialization at the recorded synapses were measured
by reconstruction of serial ultrathin sections. The number of functional AMPA
receptors was proportional to the synaptic area with a density of ∼ 1280 receptors/μm
2. Moreover, highly sensitive freeze-fracture replica labeling revealed a homogeneous
density of immunogold particles for AMPA receptors in synaptic sites (910 ± 36
particles/μm 2) and much lower density in extrasynaptic sites (19 ± 2 particles/μm
2) in the immature PCs. Our results indicate that in this developing synapse,
the efficacy of transmission is determined by the synaptic area.
author:
- first_name: Junichi
full_name: Tanaka, Junichi
last_name: Tanaka
- first_name: Masanori
full_name: Matsuzaki, Masanori
last_name: Matsuzaki
- first_name: Etsuko
full_name: Tarusawa, Etsuko
last_name: Tarusawa
- first_name: Akiko
full_name: Momiyama, Akiko
last_name: Momiyama
- first_name: Elek
full_name: Molnár, Elek
last_name: Molnár
- first_name: Haruo
full_name: Kasai, Haruo
last_name: Kasai
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
citation:
ama: Tanaka J, Matsuzaki M, Tarusawa E, et al. Number and density of AMPA receptors
in single synapses in immature cerebellum. Journal of Neuroscience. 2005;25(4):799-807.
doi:10.1523/JNEUROSCI.4256-04.2005
apa: Tanaka, J., Matsuzaki, M., Tarusawa, E., Momiyama, A., Molnár, E., Kasai, H.,
& Shigemoto, R. (2005). Number and density of AMPA receptors in single synapses
in immature cerebellum. Journal of Neuroscience. Society for Neuroscience.
https://doi.org/10.1523/JNEUROSCI.4256-04.2005
chicago: Tanaka, Junichi, Masanori Matsuzaki, Etsuko Tarusawa, Akiko Momiyama, Elek
Molnár, Haruo Kasai, and Ryuichi Shigemoto. “Number and Density of AMPA Receptors
in Single Synapses in Immature Cerebellum.” Journal of Neuroscience. Society
for Neuroscience, 2005. https://doi.org/10.1523/JNEUROSCI.4256-04.2005.
ieee: J. Tanaka et al., “Number and density of AMPA receptors in single synapses
in immature cerebellum,” Journal of Neuroscience, vol. 25, no. 4. Society
for Neuroscience, pp. 799–807, 2005.
ista: Tanaka J, Matsuzaki M, Tarusawa E, Momiyama A, Molnár E, Kasai H, Shigemoto
R. 2005. Number and density of AMPA receptors in single synapses in immature cerebellum.
Journal of Neuroscience. 25(4), 799–807.
mla: Tanaka, Junichi, et al. “Number and Density of AMPA Receptors in Single Synapses
in Immature Cerebellum.” Journal of Neuroscience, vol. 25, no. 4, Society
for Neuroscience, 2005, pp. 799–807, doi:10.1523/JNEUROSCI.4256-04.2005.
short: J. Tanaka, M. Matsuzaki, E. Tarusawa, A. Momiyama, E. Molnár, H. Kasai, R.
Shigemoto, Journal of Neuroscience 25 (2005) 799–807.
date_created: 2018-12-11T11:58:52Z
date_published: 2005-01-26T00:00:00Z
date_updated: 2021-01-12T06:58:48Z
day: '26'
doi: 10.1523/JNEUROSCI.4256-04.2005
extern: 1
intvolume: ' 25'
issue: '4'
month: '01'
page: 799 - 807
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '4249'
quality_controlled: 0
status: public
title: Number and density of AMPA receptors in single synapses in immature cerebellum
type: journal_article
volume: 25
year: '2005'
...
---
_id: '2654'
abstract:
- lang: eng
text: Presynaptic metabotropic glutamate receptors (mGluRs) show a highly selective
expression and subcellular location in nerve terminals modulating neurotransmitter
release. We have demonstrated that alternatively spliced variants of mGluR8, mGluR8a
and mGluR8b, have an overlapping distribution in the hippocampus, and besides
perforant path terminals, they are expressed in the presynaptic active zone of
boutons making synapses selectively with several types of GABAergic interneurons,
primarily in the stratum oriens. Boutons labeled for mGluR8 formed either type
I or type II synapses, and the latter were GABAergic. Some mGluR8-positive boutons
also expressed mGluR7 or vasoactive intestinal polypeptide. Interneurons strongly
immunopositive for the muscarinic M2 or the mGlu1 receptors were the primary targets
of mGluR8-containing terminals in the stratum oriens, but only neurochemically
distinct subsets were innervated by mGluR8-enriched terminals. The majority of
M2-positive neurons were mGluR8 innervated, but a minority, which expresses somatostatin,
was not. Rare neurons coexpressing calretinin and M2 were consistently targeted
by mGluR8-positive boutons. In vivo recording and labeling of an mGluR8-decorated
and strongly M2-positive interneuron revealed a trilaminar cell with complex spike
bursts during theta oscillations and strong discharge during sharp wave/ripple
events. The trilaminar cell had a large projection from the CA1 area to the subiculum
and a preferential innervation of interneurons in the CA1 area in addition to
pyramidal cell somata and dendrites. The postsynaptic interneuron type-specific
expression of the high-efficacy presynaptic mGluR8 in both putative glutamatergic
and in identified GABAergic terminals predicts a role in adjusting the activity
of interneurons depending on the level of network activity.
author:
- first_name: Francesco
full_name: Ferraguti, Francesco
last_name: Ferraguti
- first_name: Thomas
full_name: Klausberger,Thomas
last_name: Klausberger
- first_name: Philip
full_name: Cobden, Philip M
last_name: Cobden
- first_name: Agnès
full_name: Baude, Agnès
last_name: Baude
- first_name: John
full_name: Roberts, John D
last_name: Roberts
- first_name: Péter
full_name: Szűcs, Péter
last_name: Szűcs
- first_name: Ayae
full_name: Kinoshita, Ayae
last_name: Kinoshita
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Péter
full_name: Somogyi, Péter
last_name: Somogyi
- first_name: Yannis
full_name: Dalezios, Yannis
last_name: Dalezios
citation:
ama: Ferraguti F, Klausberger T, Cobden P, et al. Metabotropic glutamate receptor
8-expressing nerve terminals target subsets of GABAergic neurons in the hippocampus.
Journal of Neuroscience. 2005;25(45):10520-10536. doi:10.1523/JNEUROSCI.2547-05.2005
apa: Ferraguti, F., Klausberger, T., Cobden, P., Baude, A., Roberts, J., Szűcs,
P., … Dalezios, Y. (2005). Metabotropic glutamate receptor 8-expressing nerve
terminals target subsets of GABAergic neurons in the hippocampus. Journal of
Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.2547-05.2005
chicago: Ferraguti, Francesco, Thomas Klausberger, Philip Cobden, Agnès Baude, John
Roberts, Péter Szűcs, Ayae Kinoshita, Ryuichi Shigemoto, Péter Somogyi, and Yannis
Dalezios. “ Metabotropic Glutamate Receptor 8-Expressing Nerve Terminals Target
Subsets of GABAergic Neurons in the Hippocampus.” Journal of Neuroscience.
Society for Neuroscience, 2005. https://doi.org/10.1523/JNEUROSCI.2547-05.2005.
ieee: F. Ferraguti et al., “ Metabotropic glutamate receptor 8-expressing
nerve terminals target subsets of GABAergic neurons in the hippocampus,” Journal
of Neuroscience, vol. 25, no. 45. Society for Neuroscience, pp. 10520–10536,
2005.
ista: Ferraguti F, Klausberger T, Cobden P, Baude A, Roberts J, Szűcs P, Kinoshita
A, Shigemoto R, Somogyi P, Dalezios Y. 2005. Metabotropic glutamate receptor
8-expressing nerve terminals target subsets of GABAergic neurons in the hippocampus.
Journal of Neuroscience. 25(45), 10520–10536.
mla: Ferraguti, Francesco, et al. “ Metabotropic Glutamate Receptor 8-Expressing
Nerve Terminals Target Subsets of GABAergic Neurons in the Hippocampus.” Journal
of Neuroscience, vol. 25, no. 45, Society for Neuroscience, 2005, pp. 10520–36,
doi:10.1523/JNEUROSCI.2547-05.2005.
short: F. Ferraguti, T. Klausberger, P. Cobden, A. Baude, J. Roberts, P. Szűcs,
A. Kinoshita, R. Shigemoto, P. Somogyi, Y. Dalezios, Journal of Neuroscience 25
(2005) 10520–10536.
date_created: 2018-12-11T11:58:53Z
date_published: 2005-11-09T00:00:00Z
date_updated: 2021-01-12T06:58:51Z
day: '09'
doi: 10.1523/JNEUROSCI.2547-05.2005
extern: 1
intvolume: ' 25'
issue: '45'
month: '11'
page: 10520 - 10536
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '4242'
quality_controlled: 0
status: public
title: ' Metabotropic glutamate receptor 8-expressing nerve terminals target subsets
of GABAergic neurons in the hippocampus'
type: journal_article
volume: 25
year: '2005'
...
---
_id: '2658'
abstract:
- lang: eng
text: Enhanced glutamatergic neurotransmission via the subthalamopallidal or subthalamonigral
projection seems crucial for developing parkinsonian motor signs. In the present
study, the possible changes in the expression of metabotropic glutamate receptors
(mGluRs) were examined in the basal ganglia of a primate model for Parkinson's
disease. When the patterns of immunohistochemical localization of mGluRs in monkeys
administered systemically with 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP)
were analysed in comparison with normal controls, we found that expression of
mGluR1α, but not of other subtypes, was significantly reduced in the internal
and external segments of the globus pallidus and the substantia nigra pars reticulata.
To elucidate the functional role of mGluR1 in the control of pallidal neuron activity,
extracellular unit recordings combined with intrapallidal microinjections of mGluR1-related
agents were then performed in normal and parkinsonian monkeys. In normal awake
conditions, the spontaneous firing rates of neurons in the pallidal complex were
increased by DHPG, a selective agonist of group I mGluRs, whereas they were decreased
by AIDA, a selective antagonist of group I mGluRs, or LY367385, a selective antagonist
of mGluR1. These electrophysiological data strongly indicate that the excitatory
mechanism of pallidal neurons by glutamate is mediated at least partly through
mGluR1. The effects of the mGluR1-related agents on neuronal firing in the internal
pallidal segment became rather obscure after MPTP treatment. Our results suggest
that the specific down-regulation of pallidal and nigral mGluR1 ot in the parkinsonian
state may exert a compensatory action to reverse the overactivity of the subthalamic
nucleus-derived glutamatergic input that is generated in the disease.
author:
- first_name: Katsuyuki
full_name: Kaneda, Katsuyuki
last_name: Kaneda
- first_name: Yoshihisa
full_name: Tachibana, Yoshihisa
last_name: Tachibana
- first_name: Michiko
full_name: Imanishi, Michiko
last_name: Imanishi
- first_name: Hitoshi
full_name: Kita, Hitoshi
last_name: Kita
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Atsushi
full_name: Nambu, Atsushi
last_name: Nambu
- first_name: Masahiko
full_name: Takada, Masahiko
last_name: Takada
citation:
ama: Kaneda K, Tachibana Y, Imanishi M, et al. Down-regulation of metabotropic glutamate
receptor 1α in globus pallidus and substantia nigra of parkinsonian monkeys. European
Journal of Neuroscience. 2005;22(12):3241-3254. doi:10.1111/j.1460-9568.2005.04488.x
apa: Kaneda, K., Tachibana, Y., Imanishi, M., Kita, H., Shigemoto, R., Nambu, A.,
& Takada, M. (2005). Down-regulation of metabotropic glutamate receptor 1α
in globus pallidus and substantia nigra of parkinsonian monkeys. European Journal
of Neuroscience. Wiley-Blackwell. https://doi.org/10.1111/j.1460-9568.2005.04488.x
chicago: Kaneda, Katsuyuki, Yoshihisa Tachibana, Michiko Imanishi, Hitoshi Kita,
Ryuichi Shigemoto, Atsushi Nambu, and Masahiko Takada. “Down-Regulation of Metabotropic
Glutamate Receptor 1α in Globus Pallidus and Substantia Nigra of Parkinsonian
Monkeys.” European Journal of Neuroscience. Wiley-Blackwell, 2005. https://doi.org/10.1111/j.1460-9568.2005.04488.x.
ieee: K. Kaneda et al., “Down-regulation of metabotropic glutamate receptor
1α in globus pallidus and substantia nigra of parkinsonian monkeys,” European
Journal of Neuroscience, vol. 22, no. 12. Wiley-Blackwell, pp. 3241–3254,
2005.
ista: Kaneda K, Tachibana Y, Imanishi M, Kita H, Shigemoto R, Nambu A, Takada M.
2005. Down-regulation of metabotropic glutamate receptor 1α in globus pallidus
and substantia nigra of parkinsonian monkeys. European Journal of Neuroscience.
22(12), 3241–3254.
mla: Kaneda, Katsuyuki, et al. “Down-Regulation of Metabotropic Glutamate Receptor
1α in Globus Pallidus and Substantia Nigra of Parkinsonian Monkeys.” European
Journal of Neuroscience, vol. 22, no. 12, Wiley-Blackwell, 2005, pp. 3241–54,
doi:10.1111/j.1460-9568.2005.04488.x.
short: K. Kaneda, Y. Tachibana, M. Imanishi, H. Kita, R. Shigemoto, A. Nambu, M.
Takada, European Journal of Neuroscience 22 (2005) 3241–3254.
date_created: 2018-12-11T11:58:55Z
date_published: 2005-12-01T00:00:00Z
date_updated: 2021-01-12T06:58:52Z
day: '01'
doi: 10.1111/j.1460-9568.2005.04488.x
extern: 1
intvolume: ' 22'
issue: '12'
month: '12'
page: 3241 - 3254
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4240'
quality_controlled: 0
status: public
title: Down-regulation of metabotropic glutamate receptor 1α in globus pallidus and
substantia nigra of parkinsonian monkeys
type: journal_article
volume: 22
year: '2005'
...
---
_id: '2652'
abstract:
- lang: eng
text: We studied neurogliaform neurons in the stratum lacunosum moleculare of the
CA1 hippocampal area. These interneurons have short stellate dendrites and an
extensive axonal arbor mainly located in the stratum lacunosum moleculare. Single-cell
reverse transcription-PCR showed that these neurons were GABAergic and that the
majority expressed mRNA for neuropeptide Y. Most neurogliaform neurons tested
were immunoreactive for α-actinin-2, and many stratum lacunosum moleculare interneurons
coexpressed α-actinin-2 and neuropeptide Y. Neurogliaform neurons received monosynaptic,
DNQX-sensitive excitatory input from the perforant path, and 40 Hz stimulation
of this input evoked EPSCs displaying either depression or initial facilitation,
followed by depression. Paired recordings performed between neurogliaform neurons
showed that 85% of pairs were electrically connected and 70% were also connected
via GABAergic synapses. Injection of sine waveforms into neurons during paired
recordings resulted in transmission of the waveforms through the electrical synapse.
Unitary IPSCs recorded from neurogliaform pairs readily fatigued, had a slow decay,
and had a strong depression of the synaptic response at a 5 Hz stimulation frequency
that was antagonized by the GABA B antagonist (2S)-3-[[(1S)-1-(3,4-dichlorophenyl)ethyl]amino-2-hydroxypropyl](phenylmethyl)
phosphinic acid (CGP55845). The amplitude of the first IPSC during the 5 Hz stimulation
was also increased by CGP55845, suggesting a tonic inhibition of synaptic transmission.
A small unitary GABA B-mediated IPSC could also be detected, providing the first
evidence for such a component between GABAergic interneurons. Electron microscopic
localization of the GABA B1 subunit at neurogliaform synapses revealed the protein
in both presynaptic and postsynaptic membranes. Our data disclose a novel interneuronal
network well suited for modulating the flow of information between the entorhinal
cortex and CA1 hippocampus.
author:
- first_name: Christopher
full_name: Price, Christopher J
last_name: Price
- first_name: Bruno
full_name: Cauli, Bruno
last_name: Cauli
- first_name: Endre
full_name: Kovács, Endre R
last_name: Kovács
- first_name: Ákos
full_name: Kulik, Ákos
last_name: Kulik
- first_name: Bertrand
full_name: Lambolez, Bertrand
last_name: Lambolez
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Marco
full_name: Capogna,Marco
last_name: Capogna
citation:
ama: Price C, Cauli B, Kovács E, et al. Neurogliaform neurons form a novel inhibitory
network in the hippocampal CA1 area. Journal of Neuroscience. 2005;25(29):6775-6786.
doi:10.1523/JNEUROSCI.1135-05.2005
apa: Price, C., Cauli, B., Kovács, E., Kulik, Á., Lambolez, B., Shigemoto, R., &
Capogna, M. (2005). Neurogliaform neurons form a novel inhibitory network in the
hippocampal CA1 area. Journal of Neuroscience. Society for Neuroscience.
https://doi.org/10.1523/JNEUROSCI.1135-05.2005
chicago: Price, Christopher, Bruno Cauli, Endre Kovács, Ákos Kulik, Bertrand Lambolez,
Ryuichi Shigemoto, and Marco Capogna. “Neurogliaform Neurons Form a Novel Inhibitory
Network in the Hippocampal CA1 Area.” Journal of Neuroscience. Society
for Neuroscience, 2005. https://doi.org/10.1523/JNEUROSCI.1135-05.2005.
ieee: C. Price et al., “Neurogliaform neurons form a novel inhibitory network
in the hippocampal CA1 area,” Journal of Neuroscience, vol. 25, no. 29.
Society for Neuroscience, pp. 6775–6786, 2005.
ista: Price C, Cauli B, Kovács E, Kulik Á, Lambolez B, Shigemoto R, Capogna M. 2005.
Neurogliaform neurons form a novel inhibitory network in the hippocampal CA1 area.
Journal of Neuroscience. 25(29), 6775–6786.
mla: Price, Christopher, et al. “Neurogliaform Neurons Form a Novel Inhibitory Network
in the Hippocampal CA1 Area.” Journal of Neuroscience, vol. 25, no. 29,
Society for Neuroscience, 2005, pp. 6775–86, doi:10.1523/JNEUROSCI.1135-05.2005.
short: C. Price, B. Cauli, E. Kovács, Á. Kulik, B. Lambolez, R. Shigemoto, M. Capogna,
Journal of Neuroscience 25 (2005) 6775–6786.
date_created: 2018-12-11T11:58:53Z
date_published: 2005-07-20T00:00:00Z
date_updated: 2021-01-12T06:58:50Z
day: '20'
doi: 10.1523/JNEUROSCI.1135-05.2005
extern: 1
intvolume: ' 25'
issue: '29'
month: '07'
page: 6775 - 6786
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '4245'
quality_controlled: 0
status: public
title: Neurogliaform neurons form a novel inhibitory network in the hippocampal CA1
area
type: journal_article
volume: 25
year: '2005'
...
---
_id: '2655'
abstract:
- lang: eng
text: Input-dependent left-right asymmetry of NMDA receptor ε2 (NR2B) subunit allocation
was discovered in hippocampal Schaffer collateral (Sch) and commissural fiber
pyramidal cell synapses (Kawakami et al., 2003). To investigate whether this asymmetrical
ε2 allocation is also related to the types of the postsynaptic cells, we compared
postembedding immunogold labeling for ε2 in left and right Sch synapses on pyramidal
cells and interneurons. To facilitate the detection of ε2 density difference,
we used ε1 (NR2A) knock-out (KO) mice, which have a simplified NMDA receptor subunit
composition. The labeling density for ε2 but not ζ1 (NR1) and subtype 2/3 glutamate
receptor (GluR2/3) in Sch-CA1 pyramidal cell synapses was significantly different
between the left and right hippocampus with opposite directions in strata oriens
and radiatum; the left to right ratio of ε2 labeling density was 1:1.50 in stratum
oriens and 1.44:1 in stratum radiatum. No significant difference, however, was
detected in CA1 stratum radiatum between the left and right Sch-GluR4-positive
(mostly parvalbumin-positive) and Sch-GluR4-negative interneuron synapses. Consistent
with the anatomical asymmetry, the amplitude ratio of NMDA EPSCs to non-NMDA EPSCs
in pyramidal cells was approximately two times larger in right than left stratum
radiatum and vice versa in stratum oriens of ε1 KO mice. Moreover, the amplitude
of long-term potentiation in the Sch-CA1 synapses of left stratum radiatum was
significantly larger than that in the right corresponding synapses. These results
indicate that the asymmetry of ε2 distribution is target cell specific, resulting
in the left-right difference in NMDA receptor content and plasticity in Sch-CA1
pyramidal cell synapses in ε1 KO mice.
author:
- first_name: Yue
full_name: Wu, Yue
last_name: Wu
- first_name: Ryosuke
full_name: Kawakami, Ryosuke
last_name: Kawakami
- first_name: Yoshiaki
full_name: Shinohara, Yoshiaki
last_name: Shinohara
- first_name: Masahiro
full_name: Fukaya, Masahiro
last_name: Fukaya
- first_name: Kenji
full_name: Sakimura, Kenji
last_name: Sakimura
- first_name: Masayoshi
full_name: Mishina, Masayoshi
last_name: Mishina
- first_name: Masahiko
full_name: Watanabe, Masahiko
last_name: Watanabe
- first_name: Isao
full_name: Ito, Isao
last_name: Ito
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
citation:
ama: Wu Y, Kawakami R, Shinohara Y, et al. Target-cell-specific left-right asymmetry
of NMDA receptor content in Schaffer collateral synapses in ε1/NR2A knock-out
mice. Journal of Neuroscience. 2005;25(40):9213-9226. doi:10.1523/JNEUROSCI.2134-05.2005
apa: Wu, Y., Kawakami, R., Shinohara, Y., Fukaya, M., Sakimura, K., Mishina, M.,
… Shigemoto, R. (2005). Target-cell-specific left-right asymmetry of NMDA receptor
content in Schaffer collateral synapses in ε1/NR2A knock-out mice. Journal
of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.2134-05.2005
chicago: Wu, Yue, Ryosuke Kawakami, Yoshiaki Shinohara, Masahiro Fukaya, Kenji Sakimura,
Masayoshi Mishina, Masahiko Watanabe, Isao Ito, and Ryuichi Shigemoto. “Target-Cell-Specific
Left-Right Asymmetry of NMDA Receptor Content in Schaffer Collateral Synapses
in Ε1/NR2A Knock-out Mice.” Journal of Neuroscience. Society for Neuroscience,
2005. https://doi.org/10.1523/JNEUROSCI.2134-05.2005.
ieee: Y. Wu et al., “Target-cell-specific left-right asymmetry of NMDA receptor
content in Schaffer collateral synapses in ε1/NR2A knock-out mice,” Journal
of Neuroscience, vol. 25, no. 40. Society for Neuroscience, pp. 9213–9226,
2005.
ista: Wu Y, Kawakami R, Shinohara Y, Fukaya M, Sakimura K, Mishina M, Watanabe M,
Ito I, Shigemoto R. 2005. Target-cell-specific left-right asymmetry of NMDA receptor
content in Schaffer collateral synapses in ε1/NR2A knock-out mice. Journal of
Neuroscience. 25(40), 9213–9226.
mla: Wu, Yue, et al. “Target-Cell-Specific Left-Right Asymmetry of NMDA Receptor
Content in Schaffer Collateral Synapses in Ε1/NR2A Knock-out Mice.” Journal
of Neuroscience, vol. 25, no. 40, Society for Neuroscience, 2005, pp. 9213–26,
doi:10.1523/JNEUROSCI.2134-05.2005.
short: Y. Wu, R. Kawakami, Y. Shinohara, M. Fukaya, K. Sakimura, M. Mishina, M.
Watanabe, I. Ito, R. Shigemoto, Journal of Neuroscience 25 (2005) 9213–9226.
date_created: 2018-12-11T11:58:54Z
date_published: 2005-10-05T00:00:00Z
date_updated: 2021-01-12T06:58:51Z
day: '05'
doi: 10.1523/JNEUROSCI.2134-05.2005
extern: 1
intvolume: ' 25'
issue: '40'
month: '10'
page: 9213 - 9226
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '4243'
quality_controlled: 0
status: public
title: Target-cell-specific left-right asymmetry of NMDA receptor content in Schaffer
collateral synapses in ε1/NR2A knock-out mice
type: journal_article
volume: 25
year: '2005'
...
---
_id: '2653'
abstract:
- lang: eng
text: Synaptic vesicle release occurs at a specialized membrane domain known as
the presynaptic active zone (AZ). Several membrane proteins are involved in the
vesicle release processes such as docking, priming, and exocytotic fusion. Cytomatrix
at the active zone (CAZ) proteins are structural components of the AZ and are
highly concentrated in it. Localization of other release-related proteins including
target soluble N-ethylmaleimide-sensitive-factor attachment protein receptor (t-SNARE)
proteins, however, has not been well demonstrated in the AZ. Here, we used sodium
dodecyl sulfate-digested freeze-fracture replica labeling (SDS-FRL) to analyze
quantitatively the distribution of CAZ and t-SNARE proteins in the hippocampal
CA3 area. The AZ in replicated membrane was identified by immunolabeling for CAZ
proteins (CAZ-associated structural protein [CAST] and Bassoon). Clusters of immunogold
particles for these proteins were found on the P-face of presynaptic terminals
of the mossy fiber and associational/commissural (AJC) fiber. Co-labeling with
CAST revealed distribution of the t-SNARE proteins syntaxin and synaptosomal-associated
protein of 25 kDa (SNAP-25) in the AZ as well as in the extrasynaptic membrane
surrounding the AZ (SZ). Quantitative analysis demonstrated that the density of
immunoparticles for CAST in the AZ was more than 100 times higher than in the
SZ, whereas that for syntaxin and SNAP-25 was not significantly different between
the AZ and SZ in both the A/C and mossy fiber terminals. These results support
the involvement of the t-SNARE proteins in exocytotic fusion in the AZ and the
role of CAST in specialization of the membrane domain for the AZ.
author:
- first_name: Akari
full_name: Hagiwara, Akari
last_name: Hagiwara
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Maki
full_name: Deguchi-Tawarada, Maki
last_name: Deguchi Tawarada
- first_name: Toshihisa
full_name: Ohtsuka, Toshihisa
last_name: Ohtsuka
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
citation:
ama: Hagiwara A, Fukazawa Y, Deguchi Tawarada M, Ohtsuka T, Shigemoto R. Differential
distribution of release-related proteins in the hippocampal CA3 area as revealed
by freeze-fracture replica labeling. Journal of Comparative Neurology.
2005;489(2):195-216. doi:10.1002/cne.20633
apa: Hagiwara, A., Fukazawa, Y., Deguchi Tawarada, M., Ohtsuka, T., & Shigemoto,
R. (2005). Differential distribution of release-related proteins in the hippocampal
CA3 area as revealed by freeze-fracture replica labeling. Journal of Comparative
Neurology. Wiley-Blackwell. https://doi.org/10.1002/cne.20633
chicago: Hagiwara, Akari, Yugo Fukazawa, Maki Deguchi Tawarada, Toshihisa Ohtsuka,
and Ryuichi Shigemoto. “Differential Distribution of Release-Related Proteins
in the Hippocampal CA3 Area as Revealed by Freeze-Fracture Replica Labeling.”
Journal of Comparative Neurology. Wiley-Blackwell, 2005. https://doi.org/10.1002/cne.20633.
ieee: A. Hagiwara, Y. Fukazawa, M. Deguchi Tawarada, T. Ohtsuka, and R. Shigemoto,
“Differential distribution of release-related proteins in the hippocampal CA3
area as revealed by freeze-fracture replica labeling,” Journal of Comparative
Neurology, vol. 489, no. 2. Wiley-Blackwell, pp. 195–216, 2005.
ista: Hagiwara A, Fukazawa Y, Deguchi Tawarada M, Ohtsuka T, Shigemoto R. 2005.
Differential distribution of release-related proteins in the hippocampal CA3 area
as revealed by freeze-fracture replica labeling. Journal of Comparative Neurology.
489(2), 195–216.
mla: Hagiwara, Akari, et al. “Differential Distribution of Release-Related Proteins
in the Hippocampal CA3 Area as Revealed by Freeze-Fracture Replica Labeling.”
Journal of Comparative Neurology, vol. 489, no. 2, Wiley-Blackwell, 2005,
pp. 195–216, doi:10.1002/cne.20633.
short: A. Hagiwara, Y. Fukazawa, M. Deguchi Tawarada, T. Ohtsuka, R. Shigemoto,
Journal of Comparative Neurology 489 (2005) 195–216.
date_created: 2018-12-11T11:58:53Z
date_published: 2005-08-22T00:00:00Z
date_updated: 2021-01-12T06:58:50Z
day: '22'
doi: 10.1002/cne.20633
extern: 1
intvolume: ' 489'
issue: '2'
month: '08'
page: 195 - 216
publication: Journal of Comparative Neurology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4244'
quality_controlled: 0
status: public
title: Differential distribution of release-related proteins in the hippocampal CA3
area as revealed by freeze-fracture replica labeling
type: journal_article
volume: 489
year: '2005'
...
---
_id: '2656'
abstract:
- lang: eng
text: Previous studies have shown that neurons in the sacral dorsal commissural
nucleus (SDCN) express neurokinin-1 receptor (NK1R) and can be modulated by the
co-release of GABA and glycine (Gly) from single presynaptic terminal. These results
raise the possibility that GABA/Gly-cocontaining terminals might make synaptic
contacts with NK1R-expressing neurons in the SDCN. In order to provide morphological
evidence for this hypothesis, the triple-immunohistochemical studies were performed
in the SDCN. Triple-immunofluorescence histochemical study showed that some axon
terminals in close association with NK1R-immunopositive (NK1R-ip) neurons in the
SDCN were immunopositive for both glutamic acid decarboxylase (GAD) and glycine
transporter 2 (GlyT2). In electron microscopic dual- and triple-immunohistochemistry
for GAD/GlyT2, GAD/NK1R, GlyT2/NK1R, or GAD/GlyT2/NK1R also revealed dually labeled
(GAD/GlyT2-ip) synaptic terminals upon SDCN neurons, as well as GAD- and/or GlyT2-ip
axon terminals in synaptic contact with NK1R-ip SDCN neurons. These results suggested
that some synaptic terminals upon NK1R-expressing SDCN neurons co-released both
GABA and Gly.
author:
- first_name: Yu
full_name: Feng, Yu-Peng
last_name: Feng
- first_name: Yun
full_name: Li, Yun-Qing
last_name: Li
- first_name: Wen
full_name: Wang, Wen
last_name: Wang
- first_name: Sheng
full_name: Wu, Sheng-Xi
last_name: Wu
- first_name: Tao
full_name: Chen, Tao
last_name: Chen
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Noboru
full_name: Mizuno, Noboru
last_name: Mizuno
citation:
ama: Feng Y, Li Y, Wang W, et al. Morphological evidence for GABA/glycine-cocontaining
terminals in synaptic contact with neurokinin-1 receptor-expressing neurons in
the sacral dorsal commissural nucleus of the rat. Neuroscience Letters.
2005;388(3):144-148. doi:10.1016/j.neulet.2005.06.068
apa: Feng, Y., Li, Y., Wang, W., Wu, S., Chen, T., Shigemoto, R., & Mizuno,
N. (2005). Morphological evidence for GABA/glycine-cocontaining terminals in synaptic
contact with neurokinin-1 receptor-expressing neurons in the sacral dorsal commissural
nucleus of the rat. Neuroscience Letters. Elsevier. https://doi.org/10.1016/j.neulet.2005.06.068
chicago: Feng, Yu, Yun Li, Wen Wang, Sheng Wu, Tao Chen, Ryuichi Shigemoto, and
Noboru Mizuno. “Morphological Evidence for GABA/Glycine-Cocontaining Terminals
in Synaptic Contact with Neurokinin-1 Receptor-Expressing Neurons in the Sacral
Dorsal Commissural Nucleus of the Rat.” Neuroscience Letters. Elsevier,
2005. https://doi.org/10.1016/j.neulet.2005.06.068.
ieee: Y. Feng et al., “Morphological evidence for GABA/glycine-cocontaining
terminals in synaptic contact with neurokinin-1 receptor-expressing neurons in
the sacral dorsal commissural nucleus of the rat,” Neuroscience Letters,
vol. 388, no. 3. Elsevier, pp. 144–148, 2005.
ista: Feng Y, Li Y, Wang W, Wu S, Chen T, Shigemoto R, Mizuno N. 2005. Morphological
evidence for GABA/glycine-cocontaining terminals in synaptic contact with neurokinin-1
receptor-expressing neurons in the sacral dorsal commissural nucleus of the rat.
Neuroscience Letters. 388(3), 144–148.
mla: Feng, Yu, et al. “Morphological Evidence for GABA/Glycine-Cocontaining Terminals
in Synaptic Contact with Neurokinin-1 Receptor-Expressing Neurons in the Sacral
Dorsal Commissural Nucleus of the Rat.” Neuroscience Letters, vol. 388,
no. 3, Elsevier, 2005, pp. 144–48, doi:10.1016/j.neulet.2005.06.068.
short: Y. Feng, Y. Li, W. Wang, S. Wu, T. Chen, R. Shigemoto, N. Mizuno, Neuroscience
Letters 388 (2005) 144–148.
date_created: 2018-12-11T11:58:54Z
date_published: 2005-11-18T00:00:00Z
date_updated: 2021-01-12T06:58:51Z
day: '18'
doi: 10.1016/j.neulet.2005.06.068
extern: 1
intvolume: ' 388'
issue: '3'
month: '11'
page: 144 - 148
publication: Neuroscience Letters
publication_status: published
publisher: Elsevier
publist_id: '4241'
quality_controlled: 0
status: public
title: Morphological evidence for GABA/glycine-cocontaining terminals in synaptic
contact with neurokinin-1 receptor-expressing neurons in the sacral dorsal commissural
nucleus of the rat
type: journal_article
volume: 388
year: '2005'
...
---
_id: '2744'
abstract:
- lang: eng
text: We study the long time evolution of a quantum particle interacting with a
random potential in the Boltzmann-Grad low density limit. We prove that the phase
space density of the quantum evolution defined through the Husimi function converges
weakly to a linear Boltzmann equation. The Boltzmann collision kernel is given
by the full quantum scattering cross-section of the obstacle potential.
author:
- first_name: David
full_name: Eng, David
last_name: Eng
- first_name: László
full_name: László Erdös
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
citation:
ama: Eng D, Erdös L. The linear Boltzmann equation as the low density limit of a
random Schrödinger equation. Reviews in Mathematical Physics. 2005;17(6):669-743.
doi:10.1142/S0129055X0500242X
apa: Eng, D., & Erdös, L. (2005). The linear Boltzmann equation as the low density
limit of a random Schrödinger equation. Reviews in Mathematical Physics.
World Scientific Publishing. https://doi.org/10.1142/S0129055X0500242X
chicago: Eng, David, and László Erdös. “The Linear Boltzmann Equation as the Low
Density Limit of a Random Schrödinger Equation.” Reviews in Mathematical Physics.
World Scientific Publishing, 2005. https://doi.org/10.1142/S0129055X0500242X.
ieee: D. Eng and L. Erdös, “The linear Boltzmann equation as the low density limit
of a random Schrödinger equation,” Reviews in Mathematical Physics, vol.
17, no. 6. World Scientific Publishing, pp. 669–743, 2005.
ista: Eng D, Erdös L. 2005. The linear Boltzmann equation as the low density limit
of a random Schrödinger equation. Reviews in Mathematical Physics. 17(6), 669–743.
mla: Eng, David, and László Erdös. “The Linear Boltzmann Equation as the Low Density
Limit of a Random Schrödinger Equation.” Reviews in Mathematical Physics,
vol. 17, no. 6, World Scientific Publishing, 2005, pp. 669–743, doi:10.1142/S0129055X0500242X.
short: D. Eng, L. Erdös, Reviews in Mathematical Physics 17 (2005) 669–743.
date_created: 2018-12-11T11:59:22Z
date_published: 2005-07-01T00:00:00Z
date_updated: 2021-01-12T06:59:25Z
day: '01'
doi: 10.1142/S0129055X0500242X
extern: 1
intvolume: ' 17'
issue: '6'
month: '07'
page: 669 - 743
publication: Reviews in Mathematical Physics
publication_status: published
publisher: World Scientific Publishing
publist_id: '4148'
quality_controlled: 0
status: public
title: The linear Boltzmann equation as the low density limit of a random Schrödinger
equation
type: journal_article
volume: 17
year: '2005'
...
---
_id: '2743'
abstract:
- lang: eng
text: We consider the supersymmetric quantum mechanical system which is obtained
by dimensionally reducing d = 6, N = 1 supersymmetric gauge theory with gauge
group U(1) and a single charged hypermultiplet. Using the deformation method and
ideas introduced by Porrati and Rozenberg [1], we present a detailed proof of
the existence of a normalizable ground state for this system.
author:
- first_name: László
full_name: László Erdös
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: David
full_name: Hasler, David G
last_name: Hasler
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
citation:
ama: 'Erdös L, Hasler D, Solovej J. Existence of the D0-D4 bound state: A detailed
proof. Annales Henri Poincare. 2005;6(2):247-267. doi:10.1007/s00023-005-0205-0'
apa: 'Erdös, L., Hasler, D., & Solovej, J. (2005). Existence of the D0-D4 bound
state: A detailed proof. Annales Henri Poincare. Birkhäuser. https://doi.org/10.1007/s00023-005-0205-0'
chicago: 'Erdös, László, David Hasler, and Jan Solovej. “Existence of the D0-D4
Bound State: A Detailed Proof.” Annales Henri Poincare. Birkhäuser, 2005.
https://doi.org/10.1007/s00023-005-0205-0.'
ieee: 'L. Erdös, D. Hasler, and J. Solovej, “Existence of the D0-D4 bound state:
A detailed proof,” Annales Henri Poincare, vol. 6, no. 2. Birkhäuser, pp.
247–267, 2005.'
ista: 'Erdös L, Hasler D, Solovej J. 2005. Existence of the D0-D4 bound state: A
detailed proof. Annales Henri Poincare. 6(2), 247–267.'
mla: 'Erdös, László, et al. “Existence of the D0-D4 Bound State: A Detailed Proof.”
Annales Henri Poincare, vol. 6, no. 2, Birkhäuser, 2005, pp. 247–67, doi:10.1007/s00023-005-0205-0.'
short: L. Erdös, D. Hasler, J. Solovej, Annales Henri Poincare 6 (2005) 247–267.
date_created: 2018-12-11T11:59:22Z
date_published: 2005-04-01T00:00:00Z
date_updated: 2021-01-12T06:59:24Z
day: '01'
doi: 10.1007/s00023-005-0205-0
extern: 1
intvolume: ' 6'
issue: '2'
month: '04'
page: 247 - 267
publication: Annales Henri Poincare
publication_status: published
publisher: Birkhäuser
publist_id: '4149'
quality_controlled: 0
status: public
title: 'Existence of the D0-D4 bound state: A detailed proof'
type: journal_article
volume: 6
year: '2005'
...
---
_id: '2788'
abstract:
- lang: eng
text: We present the results of an experimental investigation into the nature and
structure of turbulent pipe flow at moderate Reynolds numbers. A turbulence regeneration
mechanism is identified which sustains a symmetric traveling wave within the flow.
The periodicity of the mechanism allows comparison to the wavelength of numerically
observed exact traveling wave solutions and close agreement is found. The advection
speed of the upstream turbulence laminar interface in the experimental flow is
observed to form a lower bound on the phase velocities of the exact traveling
wave solutions. Overall our observations suggest that the dynamics of the turbulent
flow at moderate Reynolds numbers are governed by unstable nonlinear traveling
waves.
author:
- first_name: Björn
full_name: Björn Hof
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
- first_name: Casimir
full_name: van Doorne, Casimir W
last_name: Van Doorne
- first_name: Jerry
full_name: Westerweel, Jerry
last_name: Westerweel
- first_name: Frans
full_name: Nieuwstadt, Frans T
last_name: Nieuwstadt
citation:
ama: Hof B, Van Doorne C, Westerweel J, Nieuwstadt F. Turbulence regeneration in
pipe flow at moderate reynolds numbers. Physical Review Letters. 2005;95(21).
doi:10.1103/PhysRevLett.95.214502
apa: Hof, B., Van Doorne, C., Westerweel, J., & Nieuwstadt, F. (2005). Turbulence
regeneration in pipe flow at moderate reynolds numbers. Physical Review Letters.
American Physical Society. https://doi.org/10.1103/PhysRevLett.95.214502
chicago: Hof, Björn, Casimir Van Doorne, Jerry Westerweel, and Frans Nieuwstadt.
“Turbulence Regeneration in Pipe Flow at Moderate Reynolds Numbers.” Physical
Review Letters. American Physical Society, 2005. https://doi.org/10.1103/PhysRevLett.95.214502.
ieee: B. Hof, C. Van Doorne, J. Westerweel, and F. Nieuwstadt, “Turbulence regeneration
in pipe flow at moderate reynolds numbers,” Physical Review Letters, vol.
95, no. 21. American Physical Society, 2005.
ista: Hof B, Van Doorne C, Westerweel J, Nieuwstadt F. 2005. Turbulence regeneration
in pipe flow at moderate reynolds numbers. Physical Review Letters. 95(21).
mla: Hof, Björn, et al. “Turbulence Regeneration in Pipe Flow at Moderate Reynolds
Numbers.” Physical Review Letters, vol. 95, no. 21, American Physical Society,
2005, doi:10.1103/PhysRevLett.95.214502.
short: B. Hof, C. Van Doorne, J. Westerweel, F. Nieuwstadt, Physical Review Letters
95 (2005).
date_created: 2018-12-11T11:59:36Z
date_published: 2005-11-17T00:00:00Z
date_updated: 2021-01-12T06:59:43Z
day: '17'
doi: 10.1103/PhysRevLett.95.214502
extern: 1
intvolume: ' 95'
issue: '21'
month: '11'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '4101'
quality_controlled: 0
status: public
title: Turbulence regeneration in pipe flow at moderate reynolds numbers
type: journal_article
volume: 95
year: '2005'
...
---
_id: '2790'
abstract:
- lang: eng
text: We present the results of an experimental investigation of the effect of a
magnetic field on the stability of convection in a liquid metal. A rectangular
container of gallium is subjected to a horizontal temperature gradient and a uniform
magnetic field is applied separately in three directions. The magnetic field suppresses
the oscillation most effectively when it is applied in the vertical direction
and is least efficient when applied in the direction of the temperature gradient.
The critical temperature difference required for the onset of oscillations is
found to scale exponentially with the magnitude of the magnetic field for all
three orientations. Comparisons are made with available theory and qualitative
differences are discussed.
author:
- first_name: Björn
full_name: Björn Hof
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
- first_name: Anne
full_name: Juel, Anne
last_name: Juel
- first_name: Tom
full_name: Mullin, Tom P
last_name: Mullin
citation:
ama: Hof B, Juel A, Mullin T. Magnetohydrodynamic damping of oscillations in low-Prandtl-number
convection. Journal of Fluid Mechanics. 2005;545:193-201. doi:10.1017/S0022112005006762
apa: Hof, B., Juel, A., & Mullin, T. (2005). Magnetohydrodynamic damping of
oscillations in low-Prandtl-number convection. Journal of Fluid Mechanics.
Cambridge University Press. https://doi.org/10.1017/S0022112005006762
chicago: Hof, Björn, Anne Juel, and Tom Mullin. “Magnetohydrodynamic Damping of
Oscillations in Low-Prandtl-Number Convection.” Journal of Fluid Mechanics.
Cambridge University Press, 2005. https://doi.org/10.1017/S0022112005006762.
ieee: B. Hof, A. Juel, and T. Mullin, “Magnetohydrodynamic damping of oscillations
in low-Prandtl-number convection,” Journal of Fluid Mechanics, vol. 545.
Cambridge University Press, pp. 193–201, 2005.
ista: Hof B, Juel A, Mullin T. 2005. Magnetohydrodynamic damping of oscillations
in low-Prandtl-number convection. Journal of Fluid Mechanics. 545, 193–201.
mla: Hof, Björn, et al. “Magnetohydrodynamic Damping of Oscillations in Low-Prandtl-Number
Convection.” Journal of Fluid Mechanics, vol. 545, Cambridge University
Press, 2005, pp. 193–201, doi:10.1017/S0022112005006762.
short: B. Hof, A. Juel, T. Mullin, Journal of Fluid Mechanics 545 (2005) 193–201.
date_created: 2018-12-11T11:59:37Z
date_published: 2005-12-25T00:00:00Z
date_updated: 2021-01-12T06:59:44Z
day: '25'
doi: 10.1017/S0022112005006762
extern: 1
intvolume: ' 545'
month: '12'
page: 193 - 201
publication: Journal of Fluid Mechanics
publication_status: published
publisher: Cambridge University Press
publist_id: '4099'
quality_controlled: 0
status: public
title: Magnetohydrodynamic damping of oscillations in low-Prandtl-number convection
type: journal_article
volume: 545
year: '2005'
...
---
_id: '2789'
abstract:
- lang: eng
text: Transitional pipe flow is investigated in two different experimental set-ups.
In the first the stability threshold and the initial growth of localized perturbations
are studied. Good agreement is found with an earlier investigation of the transition
threshold. The measurement technique applied in the last part of this study allows
the reconstruction of the streamwise vorticity in a turbulent puff.
author:
- first_name: Björn
full_name: Björn Hof
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
citation:
ama: Hof B. Transition to turbulence in pipe flow. Fluid Mechanics and its Applications.
2005;77:221-231. doi:10.1007/1-4020-4049-0_12
apa: Hof, B. (2005). Transition to turbulence in pipe flow. Fluid Mechanics and
Its Applications. Springer. https://doi.org/10.1007/1-4020-4049-0_12
chicago: Hof, Björn. “Transition to Turbulence in Pipe Flow.” Fluid Mechanics
and Its Applications. Springer, 2005. https://doi.org/10.1007/1-4020-4049-0_12.
ieee: B. Hof, “Transition to turbulence in pipe flow,” Fluid Mechanics and its
Applications, vol. 77. Springer, pp. 221–231, 2005.
ista: Hof B. 2005. Transition to turbulence in pipe flow. Fluid Mechanics and its
Applications. 77, 221–231.
mla: Hof, Björn. “Transition to Turbulence in Pipe Flow.” Fluid Mechanics and
Its Applications, vol. 77, Springer, 2005, pp. 221–31, doi:10.1007/1-4020-4049-0_12.
short: B. Hof, Fluid Mechanics and Its Applications 77 (2005) 221–231.
date_created: 2018-12-11T11:59:36Z
date_published: 2005-09-19T00:00:00Z
date_updated: 2021-01-12T06:59:43Z
day: '19'
doi: 10.1007/1-4020-4049-0_12
extern: 1
intvolume: ' 77'
month: '09'
page: 221 - 231
publication: Fluid Mechanics and its Applications
publication_status: published
publisher: Springer
publist_id: '4100'
quality_controlled: 0
status: public
title: Transition to turbulence in pipe flow
type: journal_article
volume: 77
year: '2005'
...
---
_id: '2867'
abstract:
- lang: eng
text: The plant hormone auxin elicits many specific context-dependent developmental
responses. Auxin promotes degradation of Aux/IAA proteins that prevent transcription
factors of the auxin response factor (ARF) family from regulating auxin-responsive
target genes. Aux/IAAs and ARFs are represented by large gene families in Arabidopsis.
Here we show that stabilization of BDL/IAA12 or its sister protein IAA13 prevents
MP/ARF5-dependent embryonic root formation whereas stabilized SHY2/IAA3 interferes
with seedling growth. Although both bdl and shy2-2 proteins inhibited MP/ARF5-dependent
reporter gene activation, shy2-2 was much less efficient than bdl to interfere
with embryonic root initiation when expressed from the BDL promoter. Similarly,
MP was much more efficient than ARF16 in this process. When expressed from the
SHY2 promoter, both shy2-2 and bdl inhibited cell elongation and auxin-induced
gene expression in the seedling hypocotyl. By contrast, gravitropism and auxin-induced
gene expression in the root, which were promoted by functionally redundant NPH4/ARF7
and ARF19 proteins, were inhibited by shy2-2, but not by bdl protein. Our results
suggest that auxin signals are converted into specific responses by matching pairs
of coexpressed ARF and Aux/IAA proteins.
author:
- first_name: Dolf
full_name: Weijers, Dolf
last_name: Weijers
- first_name: Eva
full_name: Eva Benková
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Katja
full_name: Jäger, Katja E
last_name: Jäger
- first_name: Alexandra
full_name: Schlereth, Alexandra
last_name: Schlereth
- first_name: Thorsten
full_name: Hamann, Thorsten
last_name: Hamann
- first_name: Marika
full_name: Kientz, Marika
last_name: Kientz
- first_name: Jill
full_name: Wilmoth, Jill C
last_name: Wilmoth
- first_name: Jason
full_name: Reed, Jason W
last_name: Reed
- first_name: Gerd
full_name: Jürgens, Gerd
last_name: Jürgens
citation:
ama: Weijers D, Benková E, Jäger K, et al. Developmental specificity of auxin response
by pairs of ARF and Aux/IAA transcriptional regulators. EMBO Journal. 2005;24(10):1874-1885.
doi:10.1038/sj.emboj.7600659
apa: Weijers, D., Benková, E., Jäger, K., Schlereth, A., Hamann, T., Kientz, M.,
… Jürgens, G. (2005). Developmental specificity of auxin response by pairs of
ARF and Aux/IAA transcriptional regulators. EMBO Journal. Wiley-Blackwell.
https://doi.org/10.1038/sj.emboj.7600659
chicago: Weijers, Dolf, Eva Benková, Katja Jäger, Alexandra Schlereth, Thorsten
Hamann, Marika Kientz, Jill Wilmoth, Jason Reed, and Gerd Jürgens. “Developmental
Specificity of Auxin Response by Pairs of ARF and Aux/IAA Transcriptional Regulators.”
EMBO Journal. Wiley-Blackwell, 2005. https://doi.org/10.1038/sj.emboj.7600659.
ieee: D. Weijers et al., “Developmental specificity of auxin response by
pairs of ARF and Aux/IAA transcriptional regulators,” EMBO Journal, vol.
24, no. 10. Wiley-Blackwell, pp. 1874–1885, 2005.
ista: Weijers D, Benková E, Jäger K, Schlereth A, Hamann T, Kientz M, Wilmoth J,
Reed J, Jürgens G. 2005. Developmental specificity of auxin response by pairs
of ARF and Aux/IAA transcriptional regulators. EMBO Journal. 24(10), 1874–1885.
mla: Weijers, Dolf, et al. “Developmental Specificity of Auxin Response by Pairs
of ARF and Aux/IAA Transcriptional Regulators.” EMBO Journal, vol. 24,
no. 10, Wiley-Blackwell, 2005, pp. 1874–85, doi:10.1038/sj.emboj.7600659.
short: D. Weijers, E. Benková, K. Jäger, A. Schlereth, T. Hamann, M. Kientz, J.
Wilmoth, J. Reed, G. Jürgens, EMBO Journal 24 (2005) 1874–1885.
date_created: 2018-12-11T12:00:01Z
date_published: 2005-05-18T00:00:00Z
date_updated: 2021-01-12T07:00:22Z
day: '18'
doi: 10.1038/sj.emboj.7600659
extern: 1
intvolume: ' 24'
issue: '10'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1142592/
month: '05'
oa: 1
page: 1874 - 1885
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '3918'
quality_controlled: 0
status: public
title: Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional
regulators
type: journal_article
volume: 24
year: '2005'
...
---
_id: '2895'
abstract:
- lang: eng
text: One of the fundamental properties of the immune system is its capacity to
avoid autoimmune diseases. The mechanism underlying this process, known as self-tolerance,
is hitherto unresolved but seems to involve the control of clonal expansion of
autoreactive lymphocytes. This article reviews mathematical modeling of self-tolerance,
addressing two specific hypotheses. The first hypothesis posits that self-tolerance
is mediated by tuning of activation thresholds, which makes autoreactive T lymphocytes
reversibly "anergic" and unable to proliferate. The second hypothesis
posits that the proliferation of autoreactive T lymphocytes is instead controlled
by specific regulatory T lymphocytes. Models representing the population dynamics
of autoreactive T lymphocytes according to these two hypotheses were derived.
For each model we identified how cell density affects tolerance, and predicted
the corresponding phase spaces and bifurcations. We show that the simple induction
of proliferative anergy, as modeled here, has a density dependence that is only
partially compatible with adoptive transfers of tolerance, and that the models
of tolerance mediated by specific regulatory T cells are closer to the observations.
acknowledgement: 'The work was financially supported by Fundação para a Ciência e
Tecnologia: grants P/BIA/10094/1998, POCTI/36413/99, and POCTI/MGI/46477/2002;
and fellowships to JF (Praxis/BCC/18972/98), JS (BD/13546/97), KL (SFRH/BPD+/1157/2002),
DM (SFRH/BD/2960/2000) and TP (SFRH/BD/10550/2002).'
author:
- first_name: Jorge
full_name: Carneiro, Jorge
last_name: Carneiro
- first_name: Tiago
full_name: Tiago Paixao
id: 2C5658E6-F248-11E8-B48F-1D18A9856A87
last_name: Paixao
orcid: 0000-0003-2361-3953
- first_name: Dejan
full_name: Milutinovic, Dejan
last_name: Milutinovic
- first_name: João
full_name: Sousa, João
last_name: Sousa
- first_name: Kalet
full_name: Leon, Kalet
last_name: Leon
- first_name: Rui
full_name: Gardner, Rui
last_name: Gardner
- first_name: Jose
full_name: Faro, Jose
last_name: Faro
citation:
ama: 'Carneiro J, Paixao T, Milutinovic D, et al. Immunological self tolerance:
Lessons from mathematical modeling. Journal of Computational and Applied Mathematics.
2005;184(1):77-100. doi:10.1016/j.cam.2004.10.025'
apa: 'Carneiro, J., Paixao, T., Milutinovic, D., Sousa, J., Leon, K., Gardner, R.,
& Faro, J. (2005). Immunological self tolerance: Lessons from mathematical
modeling. Journal of Computational and Applied Mathematics. Elsevier. https://doi.org/10.1016/j.cam.2004.10.025'
chicago: 'Carneiro, Jorge, Tiago Paixao, Dejan Milutinovic, João Sousa, Kalet Leon,
Rui Gardner, and Jose Faro. “Immunological Self Tolerance: Lessons from Mathematical
Modeling.” Journal of Computational and Applied Mathematics. Elsevier,
2005. https://doi.org/10.1016/j.cam.2004.10.025.'
ieee: 'J. Carneiro et al., “Immunological self tolerance: Lessons from mathematical
modeling,” Journal of Computational and Applied Mathematics, vol. 184,
no. 1. Elsevier, pp. 77–100, 2005.'
ista: 'Carneiro J, Paixao T, Milutinovic D, Sousa J, Leon K, Gardner R, Faro J.
2005. Immunological self tolerance: Lessons from mathematical modeling. Journal
of Computational and Applied Mathematics. 184(1), 77–100.'
mla: 'Carneiro, Jorge, et al. “Immunological Self Tolerance: Lessons from Mathematical
Modeling.” Journal of Computational and Applied Mathematics, vol. 184,
no. 1, Elsevier, 2005, pp. 77–100, doi:10.1016/j.cam.2004.10.025.'
short: J. Carneiro, T. Paixao, D. Milutinovic, J. Sousa, K. Leon, R. Gardner, J.
Faro, Journal of Computational and Applied Mathematics 184 (2005) 77–100.
date_created: 2018-12-11T12:00:12Z
date_published: 2005-12-01T00:00:00Z
date_updated: 2021-01-12T07:00:32Z
day: '01'
doi: 10.1016/j.cam.2004.10.025
extern: 1
intvolume: ' 184'
issue: '1'
month: '12'
page: 77 - 100
publication: Journal of Computational and Applied Mathematics
publication_status: published
publisher: Elsevier
publist_id: '3863'
quality_controlled: 0
status: public
title: 'Immunological self tolerance: Lessons from mathematical modeling'
type: journal_article
volume: 184
year: '2005'
...
---
_id: '3004'
abstract:
- lang: eng
text: Molecular mechanisms of pattern formation in the plant embryo are not well
understood. Recent molecular and cellular studies, in conjunction with earlier
microsurgical, physiological, and genetic work, are now starting to define the
outlines of a model where gradients of the signaling molecule auxin play a central
role in embryo patterning. It is relatively clear how these gradients are established
and interpreted, but how they are maintained is still unresolved. Here, we have
studied the contributions of auxin biosynthesis, conjugation, and transport pathways
to the maintenance of embryonic auxin gradients. Auxin homeostasis in the embryo
was manipulated by region-specific conditional expression of indoleacetic acid-tryptophan
monooxygenase or indoleacetic acid-lysine synthetase, bacterial enzymes for auxin
biosynthesis or conjugation. Neither manipulation of auxin biosynthesis nor of
auxin conjugation interfered with auxin gradients and patterning in the embryo.
This result suggests a compensatory mechanism for buffering auxin gradients in
the embryo. Chemical and genetic inhibition revealed that auxin transport activity,
in particular that of the PIN-FORMED1 (PIN1) and PIN4 proteins, is a major factor
in the maintenance of these gradients.
author:
- first_name: Dolf
full_name: Weijers, Dolf
last_name: Weijers
- first_name: Michael
full_name: Sauer, Michael
last_name: Sauer
- first_name: Olivier
full_name: Meurette, Olivier
last_name: Meurette
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Karin
full_name: Ljung, Karin
last_name: Ljung
- first_name: Göran
full_name: Sandberg, Göran
last_name: Sandberg
- first_name: Paul
full_name: Hooykaas, Paul
last_name: Hooykaas
- first_name: Remko
full_name: Offringa, Remko
last_name: Offringa
citation:
ama: Weijers D, Sauer M, Meurette O, et al. Maintenance of embryonic auxin distribution
for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis.
Plant Cell. 2005;17(9):2517-2526. doi:10.1105/tpc.105.034637
apa: Weijers, D., Sauer, M., Meurette, O., Friml, J., Ljung, K., Sandberg, G., …
Offringa, R. (2005). Maintenance of embryonic auxin distribution for apical basal
patterning by PIN FORMED dependent auxin transport in Arabidopsis. Plant Cell.
American Society of Plant Biologists. https://doi.org/10.1105/tpc.105.034637
chicago: Weijers, Dolf, Michael Sauer, Olivier Meurette, Jiří Friml, Karin Ljung,
Göran Sandberg, Paul Hooykaas, and Remko Offringa. “Maintenance of Embryonic Auxin
Distribution for Apical Basal Patterning by PIN FORMED Dependent Auxin Transport
in Arabidopsis.” Plant Cell. American Society of Plant Biologists, 2005.
https://doi.org/10.1105/tpc.105.034637.
ieee: D. Weijers et al., “Maintenance of embryonic auxin distribution for
apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis,”
Plant Cell, vol. 17, no. 9. American Society of Plant Biologists, pp. 2517–2526,
2005.
ista: Weijers D, Sauer M, Meurette O, Friml J, Ljung K, Sandberg G, Hooykaas P,
Offringa R. 2005. Maintenance of embryonic auxin distribution for apical basal
patterning by PIN FORMED dependent auxin transport in Arabidopsis. Plant Cell.
17(9), 2517–2526.
mla: Weijers, Dolf, et al. “Maintenance of Embryonic Auxin Distribution for Apical
Basal Patterning by PIN FORMED Dependent Auxin Transport in Arabidopsis.” Plant
Cell, vol. 17, no. 9, American Society of Plant Biologists, 2005, pp. 2517–26,
doi:10.1105/tpc.105.034637.
short: D. Weijers, M. Sauer, O. Meurette, J. Friml, K. Ljung, G. Sandberg, P. Hooykaas,
R. Offringa, Plant Cell 17 (2005) 2517–2526.
date_created: 2018-12-11T12:00:48Z
date_published: 2005-07-01T00:00:00Z
date_updated: 2021-01-12T07:40:24Z
day: '01'
doi: 10.1105/tpc.105.034637
extern: 1
intvolume: ' 17'
issue: '9'
month: '07'
page: 2517 - 2526
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3698'
quality_controlled: 0
status: public
title: Maintenance of embryonic auxin distribution for apical basal patterning by
PIN FORMED dependent auxin transport in Arabidopsis
type: journal_article
volume: 17
year: '2005'
...
---
_id: '3000'
abstract:
- lang: eng
text: In plants, cell polarity is an issue more recurring than in other systems,
because plants, due to their adaptive and flexible development, often change cell
polarity postembryonically according to intrinsic cues and demands of the environment.
Recent findings on the directional movement of the plant signalling molecule auxin
provide a unique connection between individual cell polarity and the establishment
of polarity at the tissue, organ, and whole-plant levels. Decisions about the
subcellular polar targeting of PIN auxin transport components determine the direction
of auxin flow between cells and consequently mediate multiple developmental events.
In addition, mutations or chemical interference with PIN-based auxin transport
result in abnormal cell divisions. Thus, the complicated links between cell polarity
establishment, auxin transport, cytoskeleton, and oriented cell divisions now
begin to emerge. Here we review the available literature on the issues of cell
polarity in both plants and animals to extend our understanding on the generation,
maintenance, and transmission of cell polarity in plants.
author:
- first_name: Pankaj
full_name: Dhonukshe, Pankaj
last_name: Dhonukshe
- first_name: Jürgen
full_name: Kleine Vehn, Jürgen
last_name: Kleine Vehn
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Dhonukshe P, Kleine Vehn J, Friml J. Cell polarity, auxin transport and cytoskeleton
mediated division planes: Who comes first? Protoplasma. 2005;226(1-2):67-73.
doi:10.1007/s00709-005-0104-8'
apa: 'Dhonukshe, P., Kleine Vehn, J., & Friml, J. (2005). Cell polarity, auxin
transport and cytoskeleton mediated division planes: Who comes first? Protoplasma.
Springer. https://doi.org/10.1007/s00709-005-0104-8'
chicago: 'Dhonukshe, Pankaj, Jürgen Kleine Vehn, and Jiří Friml. “Cell Polarity,
Auxin Transport and Cytoskeleton Mediated Division Planes: Who Comes First?” Protoplasma.
Springer, 2005. https://doi.org/10.1007/s00709-005-0104-8.'
ieee: 'P. Dhonukshe, J. Kleine Vehn, and J. Friml, “Cell polarity, auxin transport
and cytoskeleton mediated division planes: Who comes first?,” Protoplasma,
vol. 226, no. 1–2. Springer, pp. 67–73, 2005.'
ista: 'Dhonukshe P, Kleine Vehn J, Friml J. 2005. Cell polarity, auxin transport
and cytoskeleton mediated division planes: Who comes first? Protoplasma. 226(1–2),
67–73.'
mla: 'Dhonukshe, Pankaj, et al. “Cell Polarity, Auxin Transport and Cytoskeleton
Mediated Division Planes: Who Comes First?” Protoplasma, vol. 226, no.
1–2, Springer, 2005, pp. 67–73, doi:10.1007/s00709-005-0104-8.'
short: P. Dhonukshe, J. Kleine Vehn, J. Friml, Protoplasma 226 (2005) 67–73.
date_created: 2018-12-11T12:00:47Z
date_published: 2005-10-01T00:00:00Z
date_updated: 2021-01-12T07:40:22Z
day: '01'
doi: 10.1007/s00709-005-0104-8
extern: '1'
intvolume: ' 226'
issue: 1-2
language:
- iso: eng
month: '10'
oa_version: None
page: 67 - 73
publication: Protoplasma
publication_status: published
publisher: Springer
publist_id: '3701'
quality_controlled: '1'
status: public
title: 'Cell polarity, auxin transport and cytoskeleton mediated division planes:
Who comes first?'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 226
year: '2005'
...
---
_id: '3001'
abstract:
- lang: eng
text: 'One of the mechanisms by which signalling molecules regulate cellular behaviour
is modulating subcellular protein translocation. This mode of regulation is often
based on specialized vesicle trafficking, termed constitutive cycling, which consists
of repeated internalization and recycling of proteins to and from the plasma membrane.
No such mechanism of hormone action has been shown in plants although several
proteins, including the PIN auxin efflux facilitators, exhibit constitutive cycling.
Here we show that a major regulator of plant development, auxin, inhibits endocytosis.
This effect is specific to biologically active auxins and requires activity of
the Calossin-like protein BIG. By inhibiting the internalization step of PIN constitutive
cycling, auxin increases levels of PINs at the plasma membrane. Concomitantly,
auxin promotes its own efflux from cells by a vesicle-trafficking-dependent mechanism.
Furthermore, asymmetric auxin translocation during gravitropism is correlated
with decreased PIN internalization. Our data imply a previously undescribed mode
of plant hormone action: by modulating PIN protein trafficking, auxin regulates
PIN abundance and activity at the cell surface, providing a mechanism for the
feedback regulation of auxin transport.'
author:
- first_name: Tomasz
full_name: Paciorek, Tomasz
last_name: Paciorek
- first_name: Eva
full_name: Zažímalová, Eva
last_name: Zažímalová
- first_name: Nadia
full_name: Ruthardt, Nadia
last_name: Ruthardt
- first_name: Jan
full_name: Petrášek, Jan
last_name: Petrášek
- first_name: York
full_name: Stierhof, York-Dieter
last_name: Stierhof
- first_name: Jürgen
full_name: Kleine-Vehn, Jürgen
last_name: Kleine Vehn
- first_name: David
full_name: Morris, David A
last_name: Morris
- first_name: Neil
full_name: Emans, Neil
last_name: Emans
- first_name: Gerd
full_name: Jürgens, Gerd
last_name: Jürgens
- first_name: Niko
full_name: Geldner, Niko
last_name: Geldner
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Paciorek T, Zažímalová E, Ruthardt N, et al. Auxin inhibits endocytosis and
promotes its own efflux from cells. Nature. 2005;435(7046):1251-1256. doi:10.1038/nature03633
apa: Paciorek, T., Zažímalová, E., Ruthardt, N., Petrášek, J., Stierhof, Y., Kleine
Vehn, J., … Friml, J. (2005). Auxin inhibits endocytosis and promotes its own
efflux from cells. Nature. Nature Publishing Group. https://doi.org/10.1038/nature03633
chicago: Paciorek, Tomasz, Eva Zažímalová, Nadia Ruthardt, Jan Petrášek, York Stierhof,
Jürgen Kleine Vehn, David Morris, et al. “Auxin Inhibits Endocytosis and Promotes
Its Own Efflux from Cells.” Nature. Nature Publishing Group, 2005. https://doi.org/10.1038/nature03633.
ieee: T. Paciorek et al., “Auxin inhibits endocytosis and promotes its own
efflux from cells,” Nature, vol. 435, no. 7046. Nature Publishing Group,
pp. 1251–1256, 2005.
ista: Paciorek T, Zažímalová E, Ruthardt N, Petrášek J, Stierhof Y, Kleine Vehn
J, Morris D, Emans N, Jürgens G, Geldner N, Friml J. 2005. Auxin inhibits endocytosis
and promotes its own efflux from cells. Nature. 435(7046), 1251–1256.
mla: Paciorek, Tomasz, et al. “Auxin Inhibits Endocytosis and Promotes Its Own Efflux
from Cells.” Nature, vol. 435, no. 7046, Nature Publishing Group, 2005,
pp. 1251–56, doi:10.1038/nature03633.
short: T. Paciorek, E. Zažímalová, N. Ruthardt, J. Petrášek, Y. Stierhof, J. Kleine
Vehn, D. Morris, N. Emans, G. Jürgens, N. Geldner, J. Friml, Nature 435 (2005)
1251–1256.
date_created: 2018-12-11T12:00:47Z
date_published: 2005-06-30T00:00:00Z
date_updated: 2021-01-12T07:40:23Z
day: '30'
doi: 10.1038/nature03633
extern: 1
intvolume: ' 435'
issue: '7046'
month: '06'
page: 1251 - 1256
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '3702'
quality_controlled: 0
status: public
title: Auxin inhibits endocytosis and promotes its own efflux from cells
type: journal_article
volume: 435
year: '2005'
...
---
_id: '3003'
abstract:
- lang: eng
text: 'Plant development displays an exceptional plasticity and adaptability that
involves the dynamic, asymmetric distribution of the phytohormone auxin. Polar
auxin flow, which requires polarly localized transport facilitators of the PIN
family, largely contributes to the establishment and maintenance of the auxin
gradients. Functionally overlapping action of PIN proteins mediates multiple developmental
processes, including embryo formation, organ development and tropisms. Here we
show that PIN proteins exhibit synergistic interactions, which involve cross-regulation
of PIN gene expression in pin mutants or plants with inhibited auxin transport.
Auxin itself positively feeds back on PIN gene expression in a tissue-specific
manner through an AUX/IAA-dependent signalling pathway. This regulatory switch
is indicative of a mechanism by which the loss of a specific PIN protein is compensated
for by auxin-dependent ectopic: expression of its homologues. The compensatory
properties of the PIN-dependent transport network might enable the stabilization
of auxin gradients and potentially contribute to the robustness of plant adaptive
development.'
author:
- first_name: Anne
full_name: Vieten, Anne
last_name: Vieten
- first_name: Steffen
full_name: Vanneste, Steffen
last_name: Vanneste
- first_name: Justyna
full_name: Wiśniewska, Justyna
last_name: Wiśniewska
- first_name: Eva
full_name: Eva Benková
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: René
full_name: Benjamins, René
last_name: Benjamins
- first_name: Tom
full_name: Beeckman, Tom
last_name: Beeckman
- first_name: Christian
full_name: Luschnig, Christian
last_name: Luschnig
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Vieten A, Vanneste S, Wiśniewska J, et al. Functional redundancy of PIN proteins
is accompanied by auxin-dependent cross-regulation of PIN expression. Development.
2005;132(20):4521-4531. doi:10.1242/dev.02027
apa: Vieten, A., Vanneste, S., Wiśniewska, J., Benková, E., Benjamins, R., Beeckman,
T., … Friml, J. (2005). Functional redundancy of PIN proteins is accompanied by
auxin-dependent cross-regulation of PIN expression. Development. Company
of Biologists. https://doi.org/10.1242/dev.02027
chicago: Vieten, Anne, Steffen Vanneste, Justyna Wiśniewska, Eva Benková, René Benjamins,
Tom Beeckman, Christian Luschnig, and Jiří Friml. “Functional Redundancy of PIN
Proteins Is Accompanied by Auxin-Dependent Cross-Regulation of PIN Expression.”
Development. Company of Biologists, 2005. https://doi.org/10.1242/dev.02027.
ieee: A. Vieten et al., “Functional redundancy of PIN proteins is accompanied
by auxin-dependent cross-regulation of PIN expression,” Development, vol.
132, no. 20. Company of Biologists, pp. 4521–4531, 2005.
ista: Vieten A, Vanneste S, Wiśniewska J, Benková E, Benjamins R, Beeckman T, Luschnig
C, Friml J. 2005. Functional redundancy of PIN proteins is accompanied by auxin-dependent
cross-regulation of PIN expression. Development. 132(20), 4521–4531.
mla: Vieten, Anne, et al. “Functional Redundancy of PIN Proteins Is Accompanied
by Auxin-Dependent Cross-Regulation of PIN Expression.” Development, vol.
132, no. 20, Company of Biologists, 2005, pp. 4521–31, doi:10.1242/dev.02027.
short: A. Vieten, S. Vanneste, J. Wiśniewska, E. Benková, R. Benjamins, T. Beeckman,
C. Luschnig, J. Friml, Development 132 (2005) 4521–4531.
date_created: 2018-12-11T12:00:48Z
date_published: 2005-10-01T00:00:00Z
date_updated: 2021-01-12T07:40:23Z
day: '01'
doi: 10.1242/dev.02027
extern: 1
intvolume: ' 132'
issue: '20'
month: '10'
page: 4521 - 4531
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '3700'
quality_controlled: 0
status: public
title: Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation
of PIN expression
type: journal_article
volume: 132
year: '2005'
...
---
_id: '3212'
abstract:
- lang: eng
text: |-
The Full-Domain Hash (FDH) signature scheme [3] forms one the most basic usages of random oracles. It works with a family F of trapdoor permutations (TDP), where the signature of m is computed as f−1(h(m)) (here f ∈R F and h is modelled as a random oracle). It is known to be existentially unforgeable for any TDP family F [3], although a much tighter security reduction is known for a restrictive class of TDP’s [10,14] — namely, those induced by a family of claw-free permutations (CFP) pairs. The latter result was shown [11] to match the best possible “black-box” security reduction in the random oracle model, irrespective of the TDP family F (e.g., RSA) one might use.
In this work we investigate the question if it is possible to instantiate the random oracle h with a “real” family of hash functions H such that the corresponding schemes can be proven secure in the standard model, under some natural assumption on the family F. Our main result rules out the existence of such instantiations for any assumption on F which (1) is satisfied by a family of random permutations; and (2) does not allow the attacker to invert f ∈R F on an a-priori unbounded number of points. Moreover, this holds even if the choice of H can arbitrarily depend on f. As an immediate corollary, we rule out instantiating FDH based on general claw-free permutations, which shows that in order to prove the security of FDH in the standard model one must utilize significantly more structure on F than what is sufficient for the best proof of security in the random oracle model.
acknowledgement: Supported by NSF CAREER Award CCR-0133806 and TC Grant No.CCR-0311095.
Supported by the Swiss National Science Foundation, project No. 200020-103847/1
alternative_title:
- LNCS
author:
- first_name: Yevgeniy
full_name: Dodis, Yevgeniy
last_name: Dodis
- first_name: Roberto
full_name: Oliveira, Roberto
last_name: Oliveira
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Dodis Y, Oliveira R, Pietrzak KZ. On the generic insecurity of the full domain
hash. In: Vol 3621. Springer; 2005:449-466. doi:10.1007/11535218_27'
apa: 'Dodis, Y., Oliveira, R., & Pietrzak, K. Z. (2005). On the generic insecurity
of the full domain hash (Vol. 3621, pp. 449–466). Presented at the CRYPTO: International
Cryptology Conference, Springer. https://doi.org/10.1007/11535218_27'
chicago: Dodis, Yevgeniy, Roberto Oliveira, and Krzysztof Z Pietrzak. “On the Generic
Insecurity of the Full Domain Hash,” 3621:449–66. Springer, 2005. https://doi.org/10.1007/11535218_27.
ieee: 'Y. Dodis, R. Oliveira, and K. Z. Pietrzak, “On the generic insecurity of
the full domain hash,” presented at the CRYPTO: International Cryptology Conference,
2005, vol. 3621, pp. 449–466.'
ista: 'Dodis Y, Oliveira R, Pietrzak KZ. 2005. On the generic insecurity of the
full domain hash. CRYPTO: International Cryptology Conference, LNCS, vol. 3621,
449–466.'
mla: Dodis, Yevgeniy, et al. On the Generic Insecurity of the Full Domain Hash.
Vol. 3621, Springer, 2005, pp. 449–66, doi:10.1007/11535218_27.
short: Y. Dodis, R. Oliveira, K.Z. Pietrzak, in:, Springer, 2005, pp. 449–466.
conference:
name: 'CRYPTO: International Cryptology Conference'
date_created: 2018-12-11T12:02:03Z
date_published: 2005-09-12T00:00:00Z
date_updated: 2021-01-12T07:41:50Z
day: '12'
doi: 10.1007/11535218_27
extern: 1
intvolume: ' 3621'
month: '09'
page: 449 - 466
publication_status: published
publisher: Springer
publist_id: '3470'
quality_controlled: 0
status: public
title: On the generic insecurity of the full domain hash
type: conference
volume: 3621
year: '2005'
...
---
_id: '3213'
abstract:
- lang: eng
text: |-
We study the question whether the sequential or parallel composition of two functions, each indistinguishable from a random function by non-adaptive distinguishers is secure against adaptive distinguishers. The sequential composition of F and G is the function G(F()), the parallel composition is F G where ⋆ is some group operation. It has been shown that composition indeed gives adaptive security in the information theoretic setting, but unfortunately the proof does not translate into the more interesting computational case.
In this work we show that in the computational setting composition does not imply adaptive security: If there is a prime order cyclic group where the decisional Diffie-Hellman assumption holds, then there are functions F and G which are indistinguishable by non-adaptive polynomially time-bounded adversaries, but whose parallel composition can be completely broken (i.e. we recover the key) with only three adaptive queries. We give a similar result for sequential composition. Interestingly, we need a standard assumption from the asymmetric (aka. public-key) world to prove a negative result for symmetric (aka. private-key) systems.
acknowledgement: Supported by the Swiss National Science Foundation, project No. 200020-103847/1.
alternative_title:
- LNCS
author:
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Pietrzak KZ. Composition does not imply adaptive security. In: Vol 3621. Springer;
2005:55-65. doi:10.1007/11535218_4'
apa: 'Pietrzak, K. Z. (2005). Composition does not imply adaptive security (Vol.
3621, pp. 55–65). Presented at the CRYPTO: International Cryptology Conference,
Springer. https://doi.org/10.1007/11535218_4'
chicago: Pietrzak, Krzysztof Z. “Composition Does Not Imply Adaptive Security,”
3621:55–65. Springer, 2005. https://doi.org/10.1007/11535218_4.
ieee: 'K. Z. Pietrzak, “Composition does not imply adaptive security,” presented
at the CRYPTO: International Cryptology Conference, 2005, vol. 3621, pp. 55–65.'
ista: 'Pietrzak KZ. 2005. Composition does not imply adaptive security. CRYPTO:
International Cryptology Conference, LNCS, vol. 3621, 55–65.'
mla: Pietrzak, Krzysztof Z. Composition Does Not Imply Adaptive Security.
Vol. 3621, Springer, 2005, pp. 55–65, doi:10.1007/11535218_4.
short: K.Z. Pietrzak, in:, Springer, 2005, pp. 55–65.
conference:
name: 'CRYPTO: International Cryptology Conference'
date_created: 2018-12-11T12:02:03Z
date_published: 2005-09-12T00:00:00Z
date_updated: 2021-01-12T07:41:50Z
day: '12'
doi: 10.1007/11535218_4
extern: 1
intvolume: ' 3621'
month: '09'
page: 55 - 65
publication_status: published
publisher: Springer
publist_id: '3468'
quality_controlled: 0
status: public
title: Composition does not imply adaptive security
type: conference
volume: 3621
year: '2005'
...
---
_id: '3211'
abstract:
- lang: eng
text: We present an improved bound on the advantage of any q-query adversary at
distinguishing between the CBC MAC over a random n-bit permutation and a random
function outputting n bits. The result assumes that no message queried is a prefix
of any other, as is the case when all messages to be MACed have the same length.
We go on to give an improved analysis of the encrypted CBC MAC, where there is
no restriction on queried messages. Letting m be the block length of the longest
query, our bounds are about mq2/2n for the basic CBC MAC and mo(1)q2/2n for the
encrypted CBC MAC, improving prior bounds of m2q2/2n. The new bounds translate
into improved guarantees on the probability of forging these MACs.
acknowledgement: Pietrzak was supported by the Swiss National Science Foundation,
project No. 200020-103847/1.
alternative_title:
- LNCS
author:
- first_name: Mihir
full_name: Bellare, Mihir
last_name: Bellare
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Phillip
full_name: Rogaway, Phillip
last_name: Rogaway
citation:
ama: 'Bellare M, Pietrzak KZ, Rogaway P. Improved security analyses for CBC MACs.
In: Vol 3621. Springer; 2005:527-545. doi:10.1007/11535218_32'
apa: 'Bellare, M., Pietrzak, K. Z., & Rogaway, P. (2005). Improved security
analyses for CBC MACs (Vol. 3621, pp. 527–545). Presented at the CRYPTO: International
Cryptology Conference, Springer. https://doi.org/10.1007/11535218_32'
chicago: Bellare, Mihir, Krzysztof Z Pietrzak, and Phillip Rogaway. “Improved Security
Analyses for CBC MACs,” 3621:527–45. Springer, 2005. https://doi.org/10.1007/11535218_32.
ieee: 'M. Bellare, K. Z. Pietrzak, and P. Rogaway, “Improved security analyses for
CBC MACs,” presented at the CRYPTO: International Cryptology Conference, 2005,
vol. 3621, pp. 527–545.'
ista: 'Bellare M, Pietrzak KZ, Rogaway P. 2005. Improved security analyses for CBC
MACs. CRYPTO: International Cryptology Conference, LNCS, vol. 3621, 527–545.'
mla: Bellare, Mihir, et al. Improved Security Analyses for CBC MACs. Vol.
3621, Springer, 2005, pp. 527–45, doi:10.1007/11535218_32.
short: M. Bellare, K.Z. Pietrzak, P. Rogaway, in:, Springer, 2005, pp. 527–545.
conference:
name: 'CRYPTO: International Cryptology Conference'
date_created: 2018-12-11T12:02:02Z
date_published: 2005-09-12T00:00:00Z
date_updated: 2021-01-12T07:41:50Z
day: '12'
doi: 10.1007/11535218_32
extern: 1
intvolume: ' 3621'
month: '09'
page: 527 - 545
publication_status: published
publisher: Springer
publist_id: '3469'
quality_controlled: 0
status: public
title: Improved security analyses for CBC MACs
type: conference
volume: 3621
year: '2005'
...
---
_id: '3426'
abstract:
- lang: eng
text: We discuss the formation of graded morphogen profiles in a cell layer by nonlinear
transport phenomena, important for patterning developing organisms. We focus on
a process termed transcytosis, where morphogen transport results from the binding
of ligands to receptors on the cell surface, incorporation into the cell, and
subsequent externalization. Starting from a microscopic model, we derive effective
transport equations. We show that, in contrast to morphogen transport by extracellular
diffusion, transcytosis leads to robust ligand profiles which are insensitive
to the rate of ligand production.
article_processing_charge: No
author:
- first_name: Mark Tobias
full_name: Bollenbach, Mark Tobias
id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
last_name: Bollenbach
orcid: 0000-0003-4398-476X
- first_name: Karsten
full_name: Kruse, Karsten
last_name: Kruse
- first_name: Periklis
full_name: Pantazis, Periklis
last_name: Pantazis
- first_name: Marcos
full_name: González Gaitán, Marcos
last_name: González Gaitán
- first_name: Frank
full_name: Jülicher, Frank
last_name: Jülicher
citation:
ama: Bollenbach MT, Kruse K, Pantazis P, González Gaitán M, Jülicher F. Robust formation
of morphogen gradients. Physical Review Letters. 2005;94(1). doi:10.1103/PhysRevLett.94.018103
apa: Bollenbach, M. T., Kruse, K., Pantazis, P., González Gaitán, M., & Jülicher,
F. (2005). Robust formation of morphogen gradients. Physical Review Letters.
American Physical Society. https://doi.org/10.1103/PhysRevLett.94.018103
chicago: Bollenbach, Mark Tobias, Karsten Kruse, Periklis Pantazis, Marcos González
Gaitán, and Frank Jülicher. “Robust Formation of Morphogen Gradients.” Physical
Review Letters. American Physical Society, 2005. https://doi.org/10.1103/PhysRevLett.94.018103.
ieee: M. T. Bollenbach, K. Kruse, P. Pantazis, M. González Gaitán, and F. Jülicher,
“Robust formation of morphogen gradients,” Physical Review Letters, vol.
94, no. 1. American Physical Society, 2005.
ista: Bollenbach MT, Kruse K, Pantazis P, González Gaitán M, Jülicher F. 2005. Robust
formation of morphogen gradients. Physical Review Letters. 94(1).
mla: Bollenbach, Mark Tobias, et al. “Robust Formation of Morphogen Gradients.”
Physical Review Letters, vol. 94, no. 1, American Physical Society, 2005,
doi:10.1103/PhysRevLett.94.018103.
short: M.T. Bollenbach, K. Kruse, P. Pantazis, M. González Gaitán, F. Jülicher,
Physical Review Letters 94 (2005).
date_created: 2018-12-11T12:03:16Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:43:23Z
day: '01'
doi: 10.1103/PhysRevLett.94.018103
extern: '1'
external_id:
arxiv:
- q-bio/0412014
intvolume: ' 94'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/q-bio/0412014
month: '01'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '2975'
status: public
title: Robust formation of morphogen gradients
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 94
year: '2005'
...
---
_id: '3443'
abstract:
- lang: eng
text: In the hippocampal CA1 area, a relatively homogenous population of pyramidal
cells is accompanied by a diversity of GABAergic interneurons. Previously, we
found that parvalbumin-expressing basket, axo-axonic, bistratified, and oriens-lacunosum
moleculare cells, innervating different domains of pyramidal cells, have distinct
firing patterns during network oscillations in vivo. A second family of interneurons,
expressing cholecystokinin but not parvalbumin, is known to target the same domains
of pyramidal cells as do the parvalbumin cells. To test the temporal activity
of these independent and parallel GABAergic inputs, we recorded the precise spike
timing of identified cholecystokinin interneurons during hippocampal network oscillations
in anesthetized rats and determined their molecular expression profiles and synaptic
targets. The cells were cannabinoid receptor type 1 immunopositive. Contrary to
the stereotyped firing of parvalbumin interneurons, cholecystokinin-expressing
basket and dendrite-innervating cells discharge, on average, with 1.7 ± 2.0 Hz
during high-frequency ripple oscillations in an episode-dependent manner. During
theta oscillations, cholecystokinin- expressing interneurons fire with 8.8 ± 3.3
Hz at a characteristic time on the ascending phase of theta waves (155 ± 81°),
when place cells start firing in freely moving animals. The firing patterns of
some interneurons recorded in drug-free behaving rats were similar to cholecystokinin
cells in anesthetized animals. Our results demonstrate that cholecystokinin- and
parvalbumin-expressing interneurons make different contributions to network oscillations
and play distinct roles in different brain states. We suggest that the specific
spike timing of cholecystokinin interneurons and their sensitivity to endocannabinoids
might contribute to differentiate subgroups of pyramidal cells forming neuronal
assemblies, whereas parvalbumin interneurons contribute to synchronizing the entire
network. Copyright © 2005 Society for Neuroscience.
author:
- first_name: Thomas
full_name: Klausberger,Thomas
last_name: Klausberger
- first_name: Laszlo
full_name: Marton,Laszlo F
last_name: Marton
- first_name: Joseph
full_name: Joseph O'Neill
id: 426376DC-F248-11E8-B48F-1D18A9856A87
last_name: O'Neill
- first_name: Jojanneke
full_name: Huck, Jojanneke H
last_name: Huck
- first_name: Yannis
full_name: Dalezios, Yannis
last_name: Dalezios
- first_name: Pablo
full_name: Fuentealba,Pablo
last_name: Fuentealba
- first_name: Wai
full_name: Suen, Wai Yee
last_name: Suen
- first_name: Edit
full_name: Papp, Edit Cs
last_name: Papp
- first_name: Takeshi
full_name: Kaneko, Takeshi
last_name: Kaneko
- first_name: Masahiko
full_name: Watanabe, Masahiko
last_name: Watanabe
- first_name: Jozsef L
full_name: Jozsef Csicsvari
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
- first_name: Péter
full_name: Somogyi, Péter
last_name: Somogyi
citation:
ama: Klausberger T, Marton L, O’Neill J, et al. Complementary roles of cholecystokinin-
and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations.
Journal of Neuroscience. 2005;25(42):9782-9793. doi:10.1523/JNEUROSCI.3269-05.2005
apa: Klausberger, T., Marton, L., O’Neill, J., Huck, J., Dalezios, Y., Fuentealba,
P., … Somogyi, P. (2005). Complementary roles of cholecystokinin- and parvalbumin-expressing
GABAergic neurons in hippocampal network oscillations. Journal of Neuroscience.
Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.3269-05.2005
chicago: Klausberger, Thomas, Laszlo Marton, Joseph O’Neill, Jojanneke Huck, Yannis
Dalezios, Pablo Fuentealba, Wai Suen, et al. “Complementary Roles of Cholecystokinin-
and Parvalbumin-Expressing GABAergic Neurons in Hippocampal Network Oscillations.”
Journal of Neuroscience. Society for Neuroscience, 2005. https://doi.org/10.1523/JNEUROSCI.3269-05.2005.
ieee: T. Klausberger et al., “Complementary roles of cholecystokinin- and
parvalbumin-expressing GABAergic neurons in hippocampal network oscillations,”
Journal of Neuroscience, vol. 25, no. 42. Society for Neuroscience, pp.
9782–9793, 2005.
ista: Klausberger T, Marton L, O’Neill J, Huck J, Dalezios Y, Fuentealba P, Suen
W, Papp E, Kaneko T, Watanabe M, Csicsvari JL, Somogyi P. 2005. Complementary
roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal
network oscillations. Journal of Neuroscience. 25(42), 9782–9793.
mla: Klausberger, Thomas, et al. “Complementary Roles of Cholecystokinin- and Parvalbumin-Expressing
GABAergic Neurons in Hippocampal Network Oscillations.” Journal of Neuroscience,
vol. 25, no. 42, Society for Neuroscience, 2005, pp. 9782–93, doi:10.1523/JNEUROSCI.3269-05.2005.
short: T. Klausberger, L. Marton, J. O’Neill, J. Huck, Y. Dalezios, P. Fuentealba,
W. Suen, E. Papp, T. Kaneko, M. Watanabe, J.L. Csicsvari, P. Somogyi, Journal
of Neuroscience 25 (2005) 9782–9793.
date_created: 2018-12-11T12:03:21Z
date_published: 2005-10-19T00:00:00Z
date_updated: 2021-01-12T07:43:30Z
day: '19'
doi: 10.1523/JNEUROSCI.3269-05.2005
extern: 1
intvolume: ' 25'
issue: '42'
month: '10'
page: 9782 - 9793
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '2944'
quality_controlled: 0
status: public
title: Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic
neurons in hippocampal network oscillations
type: journal_article
volume: 25
year: '2005'
...
---
_id: '3557'
abstract:
- lang: eng
text: A challenging problem in computer-aided geometric design is the decomposition
of a surface into four-sided regions that are then represented by NURBS patches.
There are various approaches published in the literature and implemented as commercially
available software, but all fall short in either automation or quality of the
result. At Raindrop Geomagic, we have recently taken a fresh approach based on
concepts from Morse theory. This by itself is not a new idea, but we have some
novel ingredients that make this work, one being a rational notion of hierarchy
that guides the construction of a simplified decomposition sensitive to only the
major critical points.
author:
- first_name: Herbert
full_name: Herbert Edelsbrunner
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Edelsbrunner H. Surface tiling with differential topology. In: ACM; 2005:9-11.
doi:http://dx.doi.org/10.2312/SGP/SGP05/009-011'
apa: 'Edelsbrunner, H. (2005). Surface tiling with differential topology (pp. 9–11).
Presented at the SGP: Eurographics Symposium on Geometry processing, ACM. http://dx.doi.org/10.2312/SGP/SGP05/009-011'
chicago: Edelsbrunner, Herbert. “Surface Tiling with Differential Topology,” 9–11.
ACM, 2005. http://dx.doi.org/10.2312/SGP/SGP05/009-011.
ieee: 'H. Edelsbrunner, “Surface tiling with differential topology,” presented at
the SGP: Eurographics Symposium on Geometry processing, 2005, pp. 9–11.'
ista: 'Edelsbrunner H. 2005. Surface tiling with differential topology. SGP: Eurographics
Symposium on Geometry processing, 9–11.'
mla: Edelsbrunner, Herbert. Surface Tiling with Differential Topology. ACM,
2005, pp. 9–11, doi:http://dx.doi.org/10.2312/SGP/SGP05/009-011.
short: H. Edelsbrunner, in:, ACM, 2005, pp. 9–11.
conference:
name: 'SGP: Eurographics Symposium on Geometry processing'
date_created: 2018-12-11T12:03:57Z
date_published: 2005-07-01T00:00:00Z
date_updated: 2021-01-12T07:44:17Z
day: '01'
doi: http://dx.doi.org/10.2312/SGP/SGP05/009-011
extern: 1
main_file_link:
- open_access: '0'
url: http://www.cs.duke.edu/~edels/Papers/2005-P-03-SurfaceTiling.pdf
month: '07'
page: 9 - 11
publication_status: published
publisher: ACM
publist_id: '2828'
quality_controlled: 0
status: public
title: Surface tiling with differential topology
type: conference
year: '2005'
...
---
_id: '3589'
abstract:
- lang: eng
text: During zebrafish gastrulation, the interplay between patterning events and
morphogenesis creates an embryo out of a seemingly unstructured blastula stage
embryo, an embryo with distinct polarities along its anterior–posterior, dorsoventral
and left–right axes at the end of gastrulation.
article_processing_charge: No
author:
- first_name: Mathias
full_name: Köppen, Mathias
last_name: Köppen
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: 'Köppen M, Heisenberg C-PJ. Cleavage and gastrulation in zebrafish embryos.
In: Encyclopedia of Life Sciences. Wiley-Blackwell; 2005. doi:10.1038/npg.els.0001072'
apa: Köppen, M., & Heisenberg, C.-P. J. (2005). Cleavage and gastrulation in
zebrafish embryos. In Encyclopedia of Life Sciences. Wiley-Blackwell. https://doi.org/10.1038/npg.els.0001072
chicago: Köppen, Mathias, and Carl-Philipp J Heisenberg. “Cleavage and Gastrulation
in Zebrafish Embryos.” In Encyclopedia of Life Sciences. Wiley-Blackwell,
2005. https://doi.org/10.1038/npg.els.0001072.
ieee: M. Köppen and C.-P. J. Heisenberg, “Cleavage and gastrulation in zebrafish
embryos,” in Encyclopedia of Life Sciences, Wiley-Blackwell, 2005.
ista: 'Köppen M, Heisenberg C-PJ. 2005.Cleavage and gastrulation in zebrafish embryos.
In: Encyclopedia of Life Sciences. .'
mla: Köppen, Mathias, and Carl-Philipp J. Heisenberg. “Cleavage and Gastrulation
in Zebrafish Embryos.” Encyclopedia of Life Sciences, Wiley-Blackwell,
2005, doi:10.1038/npg.els.0001072.
short: M. Köppen, C.-P.J. Heisenberg, in:, Encyclopedia of Life Sciences, Wiley-Blackwell,
2005.
date_created: 2018-12-11T12:04:07Z
date_published: 2005-09-23T00:00:00Z
date_updated: 2021-01-12T07:44:30Z
day: '23'
doi: 10.1038/npg.els.0001072
extern: '1'
language:
- iso: eng
month: '09'
oa_version: None
publication: Encyclopedia of Life Sciences
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2794'
status: public
title: Cleavage and gastrulation in zebrafish embryos
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2005'
...
---
_id: '3588'
article_processing_charge: No
author:
- first_name: Irinka
full_name: Castanon Ortega, Irinka
last_name: Castanon Ortega
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: 'Castanon Ortega I, Heisenberg C-PJ. Cell migration during zebrafish gastrulation.
In: Wedlich D, ed. Cell Migration in Development and Disease. Wiley-VCH;
2005:71-105. doi:10.1002/3527604669'
apa: Castanon Ortega, I., & Heisenberg, C.-P. J. (2005). Cell migration during
zebrafish gastrulation. In D. Wedlich (Ed.), Cell Migration in Development
and Disease (pp. 71–105). Wiley-VCH. https://doi.org/10.1002/3527604669
chicago: Castanon Ortega, Irinka, and Carl-Philipp J Heisenberg. “Cell Migration
during Zebrafish Gastrulation.” In Cell Migration in Development and Disease,
edited by Doris Wedlich, 71–105. Wiley-VCH, 2005. https://doi.org/10.1002/3527604669.
ieee: I. Castanon Ortega and C.-P. J. Heisenberg, “Cell migration during zebrafish
gastrulation,” in Cell Migration in Development and Disease, D. Wedlich,
Ed. Wiley-VCH, 2005, pp. 71–105.
ista: 'Castanon Ortega I, Heisenberg C-PJ. 2005.Cell migration during zebrafish
gastrulation. In: Cell Migration in Development and Disease. , 71–105.'
mla: Castanon Ortega, Irinka, and Carl-Philipp J. Heisenberg. “Cell Migration during
Zebrafish Gastrulation.” Cell Migration in Development and Disease, edited
by Doris Wedlich, Wiley-VCH, 2005, pp. 71–105, doi:10.1002/3527604669.
short: I. Castanon Ortega, C.-P.J. Heisenberg, in:, D. Wedlich (Ed.), Cell Migration
in Development and Disease, Wiley-VCH, 2005, pp. 71–105.
date_created: 2018-12-11T12:04:07Z
date_published: 2005-03-14T00:00:00Z
date_updated: 2021-01-12T07:44:29Z
day: '14'
doi: 10.1002/3527604669
editor:
- first_name: Doris
full_name: Wedlich, Doris
last_name: Wedlich
extern: '1'
language:
- iso: eng
month: '03'
oa_version: None
page: 71 - 105
publication: Cell Migration in Development and Disease
publication_status: published
publisher: Wiley-VCH
publist_id: '2795'
status: public
title: Cell migration during zebrafish gastrulation
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2005'
...
---
_id: '3590'
acknowledgement: 'BOOK REVIEWED - Gastrulation: From Cells to Embryo, Edited by Claudio
Stern. Published by Cold Spring Harbor Laboratory Press: 2004. '
article_processing_charge: No
author:
- first_name: Irinka
full_name: Castanon Ortega, Irinka
last_name: Castanon Ortega
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: Castanon Ortega I, Heisenberg C-PJ. A stern view of gastrulation. Nature
Cell Biology. 2005;7(1):19-19. doi:10.1038/ncb0105-19
apa: Castanon Ortega, I., & Heisenberg, C.-P. J. (2005). A stern view of gastrulation.
Nature Cell Biology. Nature Publishing Group. https://doi.org/10.1038/ncb0105-19
chicago: Castanon Ortega, Irinka, and Carl-Philipp J Heisenberg. “A Stern View of
Gastrulation.” Nature Cell Biology. Nature Publishing Group, 2005. https://doi.org/10.1038/ncb0105-19.
ieee: I. Castanon Ortega and C.-P. J. Heisenberg, “A stern view of gastrulation,”
Nature Cell Biology, vol. 7, no. 1. Nature Publishing Group, pp. 19–19,
2005.
ista: Castanon Ortega I, Heisenberg C-PJ. 2005. A stern view of gastrulation. Nature
Cell Biology. 7(1), 19–19.
mla: Castanon Ortega, Irinka, and Carl-Philipp J. Heisenberg. “A Stern View of Gastrulation.”
Nature Cell Biology, vol. 7, no. 1, Nature Publishing Group, 2005, pp.
19–19, doi:10.1038/ncb0105-19.
short: I. Castanon Ortega, C.-P.J. Heisenberg, Nature Cell Biology 7 (2005) 19–19.
date_created: 2018-12-11T12:04:07Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2020-10-07T06:26:47Z
day: '01'
doi: 10.1038/ncb0105-19
extern: '1'
intvolume: ' 7'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 19 - 19
publication: Nature Cell Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '2793'
status: public
title: A stern view of gastrulation
type: review
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2005'
...
---
_id: '3689'
abstract:
- lang: eng
text: Digital cameras have become almost ubiquitous and their use for fast and casual
capturing of natural images is unchallenged. For making images of documents, however,
they have not caught up to flatbed scanners yet, mainly because camera images
tend to suffer from distortion due to the perspective and are therefore limited
in their further use for archival or OCR. For images of non-planar paper surfaces
like books, page curl causes additional distortion, which poses an even greater
problem due to its nonlinearity. This paper presents a new algorithm for removing
both perspective and page curl distortion. It requires only a single camera image
as input and relies on a priori layout information instead of additional hardware.
Therefore, it is much more user friendly than most previous approaches, and allows
for flexible ad hoc document capture. Results are presented showing that the algorithm
produces visually pleasing output and increases OCR accuracy, thus having the
potential to become a general purpose preprocessing tool for camera based document
capture.
alternative_title:
- Document Analysis and Recognition
author:
- first_name: Adrian
full_name: Ulges, Adrian
last_name: Ulges
- first_name: Christoph
full_name: Christoph Lampert
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
- first_name: Thomas
full_name: Breuel,Thomas M
last_name: Breuel
citation:
ama: 'Ulges A, Lampert C, Breuel T. Document image dewarping using robust estimation
of curled text lines. In: Vol 2. IEEE; 2005:1001-1005. doi: 10.1109/ICDAR.2005.90'
apa: 'Ulges, A., Lampert, C., & Breuel, T. (2005). Document image dewarping
using robust estimation of curled text lines (Vol. 2, pp. 1001–1005). Presented
at the ICDAR: International Conference on Document Analysis and Recognition, IEEE.
https://doi.org/ 10.1109/ICDAR.2005.90'
chicago: Ulges, Adrian, Christoph Lampert, and Thomas Breuel. “Document Image Dewarping
Using Robust Estimation of Curled Text Lines,” 2:1001–5. IEEE, 2005. https://doi.org/ 10.1109/ICDAR.2005.90.
ieee: 'A. Ulges, C. Lampert, and T. Breuel, “Document image dewarping using robust
estimation of curled text lines,” presented at the ICDAR: International Conference
on Document Analysis and Recognition, 2005, vol. 2, pp. 1001–1005.'
ista: 'Ulges A, Lampert C, Breuel T. 2005. Document image dewarping using robust
estimation of curled text lines. ICDAR: International Conference on Document Analysis
and Recognition, Document Analysis and Recognition, vol. 2, 1001–1005.'
mla: Ulges, Adrian, et al. Document Image Dewarping Using Robust Estimation of
Curled Text Lines. Vol. 2, IEEE, 2005, pp. 1001–05, doi: 10.1109/ICDAR.2005.90.
short: A. Ulges, C. Lampert, T. Breuel, in:, IEEE, 2005, pp. 1001–1005.
conference:
name: 'ICDAR: International Conference on Document Analysis and Recognition'
date_created: 2018-12-11T12:04:38Z
date_published: 2005-09-01T00:00:00Z
date_updated: 2021-01-12T07:48:58Z
day: '01'
doi: ' 10.1109/ICDAR.2005.90'
extern: 1
intvolume: ' 2'
main_file_link:
- open_access: '0'
url: http:/pub.ist.ac.at/~chl/papers/ulges-icdar2004.pdf
month: '09'
page: 1001 - 1005
publication_status: published
publisher: IEEE
publist_id: '2680'
quality_controlled: 0
status: public
title: Document image dewarping using robust estimation of curled text lines
type: conference
volume: 2
year: '2005'
...
---
_id: '3684'
abstract:
- lang: eng
text: |-
Ever since text processors became popular, users have
dreamt of handling documents printed on paper as comfortably
as electronic ones, with full text search typically
appearing very close to the top of the wish list.
This paper presents the design of a prototype system that
takes a step into this direction. The user’s desktop is continuously
monitored and of each detected document a high
resolution snapshot is taken using a digital camera. The
resulting image is processed using specially designed dewarping
and OCR algorithms, making a digital and fully
searchable version of the document available to the user in
real-time. These steps are performed without any user interaction.
This enables the system to run as a background
task without disturbing the user in her work, while at the
same time offering electronic access to all paper documents
that have been present on the desktop during the uptime of
the system.
author:
- first_name: Christoph
full_name: Christoph Lampert
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
- first_name: Tim
full_name: Braun,Tim
last_name: Braun
- first_name: Adrian
full_name: Ulges, Adrian
last_name: Ulges
- first_name: Daniel
full_name: Keysers,Daniel
last_name: Keysers
- first_name: Thomas
full_name: Breuel,Thomas M
last_name: Breuel
citation:
ama: 'Lampert C, Braun T, Ulges A, Keysers D, Breuel T. Oblivious document capture
and real-time retrieval. In: CBDAR; 2005:79-86.'
apa: 'Lampert, C., Braun, T., Ulges, A., Keysers, D., & Breuel, T. (2005). Oblivious
document capture and real-time retrieval (pp. 79–86). Presented at the CBDAR:
Camera Based Document Analysis and Recognition , CBDAR.'
chicago: Lampert, Christoph, Tim Braun, Adrian Ulges, Daniel Keysers, and Thomas
Breuel. “Oblivious Document Capture and Real-Time Retrieval,” 79–86. CBDAR, 2005.
ieee: 'C. Lampert, T. Braun, A. Ulges, D. Keysers, and T. Breuel, “Oblivious document
capture and real-time retrieval,” presented at the CBDAR: Camera Based Document
Analysis and Recognition , 2005, pp. 79–86.'
ista: 'Lampert C, Braun T, Ulges A, Keysers D, Breuel T. 2005. Oblivious document
capture and real-time retrieval. CBDAR: Camera Based Document Analysis and Recognition
, 79–86.'
mla: Lampert, Christoph, et al. Oblivious Document Capture and Real-Time Retrieval.
CBDAR, 2005, pp. 79–86.
short: C. Lampert, T. Braun, A. Ulges, D. Keysers, T. Breuel, in:, CBDAR, 2005,
pp. 79–86.
conference:
name: 'CBDAR: Camera Based Document Analysis and Recognition '
date_created: 2018-12-11T12:04:36Z
date_published: 2005-08-29T00:00:00Z
date_updated: 2021-01-12T07:45:07Z
day: '29'
extern: 1
main_file_link:
- open_access: '0'
url: http://pub.ist.ac.at/~chl/papers/lampert-cbdar2005.pdf
month: '08'
page: 79 - 86
publication_status: published
publisher: CBDAR
publist_id: '2693'
quality_controlled: 0
status: public
title: Oblivious document capture and real-time retrieval
type: conference
year: '2005'
...
---
_id: '3720'
article_processing_charge: No
author:
- first_name: José
full_name: Guzmán, José
id: 30CC5506-F248-11E8-B48F-1D18A9856A87
last_name: Guzmán
- first_name: Zoltan
full_name: Gerevich, Zoltan
last_name: Gerevich
- first_name: Jan
full_name: Hengstler, Jan
last_name: Hengstler
- first_name: Peter
full_name: Illes, Peter
last_name: Illes
- first_name: Werner
full_name: Kleemann, Werner
last_name: Kleemann
citation:
ama: Guzmán J, Gerevich Z, Hengstler J, Illes P, Kleemann W. P2Y1 receptors inhibit
both strength and plasticity of glutamatergic synaptic neurotransmission in the
rat prefrontal cortex. Synapse. 2005;57(4):235-238. doi:10.1002/syn.20177
apa: Guzmán, J., Gerevich, Z., Hengstler, J., Illes, P., & Kleemann, W. (2005).
P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic
neurotransmission in the rat prefrontal cortex. Synapse. Wiley. https://doi.org/10.1002/syn.20177
chicago: Guzmán, José, Zoltan Gerevich, Jan Hengstler, Peter Illes, and Werner Kleemann.
“P2Y1 Receptors Inhibit Both Strength and Plasticity of Glutamatergic Synaptic
Neurotransmission in the Rat Prefrontal Cortex.” Synapse. Wiley, 2005.
https://doi.org/10.1002/syn.20177.
ieee: J. Guzmán, Z. Gerevich, J. Hengstler, P. Illes, and W. Kleemann, “P2Y1 receptors
inhibit both strength and plasticity of glutamatergic synaptic neurotransmission
in the rat prefrontal cortex.,” Synapse, vol. 57, no. 4. Wiley, pp. 235–238,
2005.
ista: Guzmán J, Gerevich Z, Hengstler J, Illes P, Kleemann W. 2005. P2Y1 receptors
inhibit both strength and plasticity of glutamatergic synaptic neurotransmission
in the rat prefrontal cortex. Synapse. 57(4), 235–238.
mla: Guzmán, José, et al. “P2Y1 Receptors Inhibit Both Strength and Plasticity of
Glutamatergic Synaptic Neurotransmission in the Rat Prefrontal Cortex.” Synapse,
vol. 57, no. 4, Wiley, 2005, pp. 235–38, doi:10.1002/syn.20177.
short: J. Guzmán, Z. Gerevich, J. Hengstler, P. Illes, W. Kleemann, Synapse 57 (2005)
235–238.
date_created: 2018-12-11T12:04:48Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:51:43Z
day: '01'
doi: 10.1002/syn.20177
extern: '1'
intvolume: ' 57'
issue: '4'
language:
- iso: eng
month: '01'
oa_version: None
page: 235 - 238
publication: Synapse
publication_status: published
publisher: Wiley
publist_id: '2510'
status: public
title: P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic
neurotransmission in the rat prefrontal cortex.
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 57
year: '2005'
...
---
_id: '3753'
abstract:
- lang: eng
text: Characterizing the dynamics of specific RNA levels requires real-time RNA
profiling in a single cell. We show that the combination of a synthetic modular
genetic system with fluorescence correlation spectroscopy allows us to directly
measure in real time the activity of any specific promoter in prokaryotes. Using
a simple inducible gene expression system, we found that induced RNA levels within
a single bacterium of Escherichia coli exhibited a pulsating profile in response
to a steady input of inducer. The genetic deletion of an efflux pump system, a
key determinant of antibiotic resistance, altered the pulsating transcriptional
dynamics and caused overexpression of induced RNA. In contrast with population
measurements, real-time RNA profiling permits identifying relationships between
genotypes and transcriptional dynamics that are accessible only at the level of
the single cell.
acknowledgement: '4237'
author:
- first_name: Thuc
full_name: Le,Thuc T.
last_name: Le
- first_name: Sébastien
full_name: Harlepp, Sébastien
last_name: Harlepp
- first_name: Calin C
full_name: Calin Guet
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
- first_name: Kimberly
full_name: Dittmar,Kimberly
last_name: Dittmar
- first_name: Thierry
full_name: Emonet,Thierry
last_name: Emonet
- first_name: Tao
full_name: Pan,Tao
last_name: Pan
- first_name: Philippe
full_name: Cluzel,Philippe
last_name: Cluzel
citation:
ama: Le T, Harlepp S, Guet CC, et al. Real-time RNA profiling within a single bacterium.
PNAS. 2005;102(26):9160-9164. doi:10.1073/pnas.0503311102
apa: Le, T., Harlepp, S., Guet, C. C., Dittmar, K., Emonet, T., Pan, T., & Cluzel,
P. (2005). Real-time RNA profiling within a single bacterium. PNAS. National
Academy of Sciences. https://doi.org/10.1073/pnas.0503311102
chicago: Le, Thuc, Sébastien Harlepp, Calin C Guet, Kimberly Dittmar, Thierry Emonet,
Tao Pan, and Philippe Cluzel. “Real-Time RNA Profiling within a Single Bacterium.”
PNAS. National Academy of Sciences, 2005. https://doi.org/10.1073/pnas.0503311102.
ieee: T. Le et al., “Real-time RNA profiling within a single bacterium,”
PNAS, vol. 102, no. 26. National Academy of Sciences, pp. 9160–9164, 2005.
ista: Le T, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. 2005. Real-time
RNA profiling within a single bacterium. PNAS. 102(26), 9160–9164.
mla: Le, Thuc, et al. “Real-Time RNA Profiling within a Single Bacterium.” PNAS,
vol. 102, no. 26, National Academy of Sciences, 2005, pp. 9160–64, doi:10.1073/pnas.0503311102.
short: T. Le, S. Harlepp, C.C. Guet, K. Dittmar, T. Emonet, T. Pan, P. Cluzel, PNAS
102 (2005) 9160–9164.
date_created: 2018-12-11T12:04:59Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:51:57Z
day: '01'
doi: 10.1073/pnas.0503311102
extern: 1
intvolume: ' 102'
issue: '26'
month: '01'
page: 9160 - 9164
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '2476'
quality_controlled: 0
status: public
title: Real-time RNA profiling within a single bacterium
type: journal_article
volume: 102
year: '2005'
...
---
_id: '3763'
abstract:
- lang: eng
text: The generation of realistic motion satisfying user-defined requirements is
one of the most important goals of computer animation. Our aim in this paper is
the synthesis of realistic, controllable motion for lightweight natural objects
in a gaseous medium. We formulate this problem as a large-scale spacetime optimization
with user controls and fluid motion equations as constraints. We have devised
novel and effective methods to make this large optimization tractable. Initial
trajectories are generated with data-driven synthesis based on stylistic motion
planning. Smoothed particle hydrodynamics (SPH) is used during optimization to
produce fluid simulations at a reasonable computational cost, while interesting
vortex-based fluid motion is generated by recording the presence of vortices in
the initial trajectories and maintaining them through optimization. Object rotations
are refined as a postprocess to enhance the visual quality of the results. We
demonstrate our techniques on a number of animations involving single or multiple
objects.
article_processing_charge: No
author:
- first_name: Lin
full_name: Shi, Lin
last_name: Shi
- first_name: Yizhou
full_name: Yu, Yizhou
last_name: Yu
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
- first_name: Stephen
full_name: Chenney, Stephen
last_name: Chenney
citation:
ama: Shi L, Yu Y, Wojtan C, Chenney S. Controllable motion synthesis in a gaseous
medium. The Visual Computer. 2005;21(7):474-487. doi:10.1007/s00371-005-0296-0
apa: Shi, L., Yu, Y., Wojtan, C., & Chenney, S. (2005). Controllable motion
synthesis in a gaseous medium. The Visual Computer. Springer. https://doi.org/10.1007/s00371-005-0296-0
chicago: Shi, Lin, Yizhou Yu, Chris Wojtan, and Stephen Chenney. “Controllable Motion
Synthesis in a Gaseous Medium.” The Visual Computer. Springer, 2005. https://doi.org/10.1007/s00371-005-0296-0.
ieee: L. Shi, Y. Yu, C. Wojtan, and S. Chenney, “Controllable motion synthesis in
a gaseous medium,” The Visual Computer, vol. 21, no. 7. Springer, pp. 474–487,
2005.
ista: Shi L, Yu Y, Wojtan C, Chenney S. 2005. Controllable motion synthesis in a
gaseous medium. The Visual Computer. 21(7), 474–487.
mla: Shi, Lin, et al. “Controllable Motion Synthesis in a Gaseous Medium.” The
Visual Computer, vol. 21, no. 7, Springer, 2005, pp. 474–87, doi:10.1007/s00371-005-0296-0.
short: L. Shi, Y. Yu, C. Wojtan, S. Chenney, The Visual Computer 21 (2005) 474–487.
date_created: 2018-12-11T12:05:02Z
date_published: 2005-08-01T00:00:00Z
date_updated: 2023-02-23T11:41:36Z
day: '01'
doi: 10.1007/s00371-005-0296-0
extern: '1'
intvolume: ' 21'
issue: '7'
language:
- iso: eng
month: '08'
oa_version: None
page: 474 - 487
publication: The Visual Computer
publication_status: published
publisher: Springer
publist_id: '2465'
status: public
title: Controllable motion synthesis in a gaseous medium
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2005'
...
---
_id: '3812'
abstract:
- lang: eng
text: Hippocampal GABAergic interneurons show diverse molecular and morphological
properties. The functional significance of this diversity for information processing
is poorly understood. Here we show that cholecystokinin (CCK)-expressing interneurons
in rat dentate gyrus release GABA in a highly asynchronous manner, in contrast
to parvalbumin (PV) interneurons. With a gamma-frequency burst of ten action potentials,
the ratio of asynchronous to synchronous release is 3:1 in CCK interneurons but
is 1:5 in parvalbumin interneurons. N-type channels trigger synchronous and asynchronous
release in CCK interneuron synapses, whereas P/Q-type Ca(2+) channels mediate
release at PV interneuron synapses. Effects of Ca(2+) chelators suggest that both
a long-lasting presynaptic Ca(2+) transient and a large distance between Ca(2+)
source and sensor of exocytosis contribute to the higher ratio of asynchronous
to synchronous release in CCK interneuron synapses. Asynchronous release occurs
at physiological temperature and with behaviorally relevant stimulation patterns,
thus generating long-lasting inhibition in the brain.
author:
- first_name: Stefan
full_name: Hefft, Stefan
last_name: Hefft
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Hefft S, Jonas PM. Asynchronous GABA release generates long-lasting inhibition
at a hippocampal interneuron-principal neuron synapse (Review). Nature Neuroscience.
2005;8(10):1319-1328. doi:10.1038/nn1542
apa: Hefft, S., & Jonas, P. M. (2005). Asynchronous GABA release generates long-lasting
inhibition at a hippocampal interneuron-principal neuron synapse (Review). Nature
Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn1542
chicago: Hefft, Stefan, and Peter M Jonas. “Asynchronous GABA Release Generates
Long-Lasting Inhibition at a Hippocampal Interneuron-Principal Neuron Synapse
(Review).” Nature Neuroscience. Nature Publishing Group, 2005. https://doi.org/10.1038/nn1542.
ieee: S. Hefft and P. M. Jonas, “Asynchronous GABA release generates long-lasting
inhibition at a hippocampal interneuron-principal neuron synapse (Review),” Nature
Neuroscience, vol. 8, no. 10. Nature Publishing Group, pp. 1319–28, 2005.
ista: Hefft S, Jonas PM. 2005. Asynchronous GABA release generates long-lasting
inhibition at a hippocampal interneuron-principal neuron synapse (Review). Nature
Neuroscience. 8(10), 1319–28.
mla: Hefft, Stefan, and Peter M. Jonas. “Asynchronous GABA Release Generates Long-Lasting
Inhibition at a Hippocampal Interneuron-Principal Neuron Synapse (Review).” Nature
Neuroscience, vol. 8, no. 10, Nature Publishing Group, 2005, pp. 1319–28,
doi:10.1038/nn1542.
short: S. Hefft, P.M. Jonas, Nature Neuroscience 8 (2005) 1319–28.
date_created: 2018-12-11T12:05:18Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2019-04-26T07:22:35Z
day: '01'
doi: 10.1038/nn1542
extern: 1
intvolume: ' 8'
issue: '10'
month: '01'
page: 1319 - 28
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '2399'
quality_controlled: 0
status: public
title: Asynchronous GABA release generates long-lasting inhibition at a hippocampal
interneuron-principal neuron synapse (Review)
type: review
volume: 8
year: '2005'
...
---
_id: '3896'
abstract:
- lang: eng
text: Temporal Logic Model Checking is one of the most potent tools for the verification
of finite state systems. Computation Tree Logic (CTL) has gained popularity because
unlike most other logics, CTL model checking of a single transition system can
be achieved in polynomial time. However, in most real-life problems, specially
in distributed and parallel systems, the system consist of a set of concurrent
processes and the verification problem translates to model check the composition
of the component processes. Since explicit composition leads to state explosion,
verifying the system without actually composing the components is attractive,
even for possibly restrictive class of systems. We show that the problem of compositional
CTL model checking is PSPACE complete for the class of systems composed of components
that are tree-like transition structure and do not interact among themselves.
For the simplest forms of existential and universal CTL formulas model checking
turns out to be NP complete and coNP complete, respectively. The results hold
for both synchronous and asynchronous composition.
acknowledgement: Pallab Dasgupta and P.P.Chakrabarti thank the Dept. of Science &
Tech., Govt. of India, for partial support of this work
alternative_title:
- LNCS
author:
- first_name: Krishnendu
full_name: Krishnendu Chatterjee
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Pallab
full_name: Dasgupta, Pallab
last_name: Dasgupta
- first_name: Partha
full_name: Chakrabarti, Partha P
last_name: Chakrabarti
citation:
ama: 'Chatterjee K, Dasgupta P, Chakrabarti P. Complexity of compositional model
checking of computation tree logic on simple structures. In: Vol 3326. Springer;
2005:89-102. doi:10.1007/978-3-540-30536-1_13'
apa: 'Chatterjee, K., Dasgupta, P., & Chakrabarti, P. (2005). Complexity of
compositional model checking of computation tree logic on simple structures (Vol.
3326, pp. 89–102). Presented at the IWDC: International Workshop on Distributed
Computing , Springer. https://doi.org/10.1007/978-3-540-30536-1_13'
chicago: Chatterjee, Krishnendu, Pallab Dasgupta, and Partha Chakrabarti. “Complexity
of Compositional Model Checking of Computation Tree Logic on Simple Structures,”
3326:89–102. Springer, 2005. https://doi.org/10.1007/978-3-540-30536-1_13.
ieee: 'K. Chatterjee, P. Dasgupta, and P. Chakrabarti, “Complexity of compositional
model checking of computation tree logic on simple structures,” presented at the
IWDC: International Workshop on Distributed Computing , 2005, vol. 3326, pp. 89–102.'
ista: 'Chatterjee K, Dasgupta P, Chakrabarti P. 2005. Complexity of compositional
model checking of computation tree logic on simple structures. IWDC: International
Workshop on Distributed Computing , LNCS, vol. 3326, 89–102.'
mla: Chatterjee, Krishnendu, et al. Complexity of Compositional Model Checking
of Computation Tree Logic on Simple Structures. Vol. 3326, Springer, 2005,
pp. 89–102, doi:10.1007/978-3-540-30536-1_13.
short: K. Chatterjee, P. Dasgupta, P. Chakrabarti, in:, Springer, 2005, pp. 89–102.
conference:
name: 'IWDC: International Workshop on Distributed Computing '
date_created: 2018-12-11T12:05:45Z
date_published: 2005-02-14T00:00:00Z
date_updated: 2021-01-12T07:53:02Z
day: '14'
doi: 10.1007/978-3-540-30536-1_13
extern: 1
intvolume: ' 3326'
month: '02'
page: 89 - 102
publication_status: published
publisher: Springer
publist_id: '2261'
quality_controlled: 0
status: public
title: Complexity of compositional model checking of computation tree logic on simple
structures
type: conference
volume: 3326
year: '2005'
...
---
_id: '3893'
abstract:
- lang: eng
text: 'We study infinite stochastic games played by two-players on a finite graph
with goals specified by sets of infinite traces. The games are concurrent (each
player simultaneously and independently chooses an action at each round), stochastic
(the next state is determined by a probability distribution depending on the current
state and the chosen actions), infinite (the game continues for an infinite number
of rounds), nonzero-sum (the players'' goals are not necessarily conflicting),
and undiscounted. We show that if each player has an W-regular objective expressed
as a paxity objective, then there exists an epsilon-Nash equilibrium, for every
epsilon > 0. However, exact Nash equilibria need not exist. We study the complexity
of finding values (payoff profile) of an epsilon-Nash equilibrium. We show that
the values of an epsilon-Nash equilibrium in nonzero-sum concurrent parity games
can be computed by solving the following two simpler problems: computing the values
of zero-sum (the goals of the players axe strictly conflicting) concurrent parity
games and computing epsilon-Nash equilibrium values of nonzero-sum concurrent
games with reachability objectives. As a consequence we establish that values
of an epsilon-Nash equilibrium can be computed in TFNP (total functional NP),
and hence in EXPTIME.'
alternative_title:
- 'LNCS '
author:
- first_name: Krishnendu
full_name: Krishnendu Chatterjee
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
citation:
ama: 'Chatterjee K. Two-player nonzero-sum ω-regular games. In: Vol 3653. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik; 2005:413-427. doi:10.1007/11539452_32'
apa: 'Chatterjee, K. (2005). Two-player nonzero-sum ω-regular games (Vol. 3653,
pp. 413–427). Presented at the CONCUR: Concurrency Theory, Schloss Dagstuhl -
Leibniz-Zentrum für Informatik. https://doi.org/10.1007/11539452_32'
chicago: Chatterjee, Krishnendu. “Two-Player Nonzero-Sum ω-Regular Games,” 3653:413–27.
Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005. https://doi.org/10.1007/11539452_32.
ieee: 'K. Chatterjee, “Two-player nonzero-sum ω-regular games,” presented at the
CONCUR: Concurrency Theory, 2005, vol. 3653, pp. 413–427.'
ista: 'Chatterjee K. 2005. Two-player nonzero-sum ω-regular games. CONCUR: Concurrency
Theory, LNCS , vol. 3653, 413–427.'
mla: Chatterjee, Krishnendu. Two-Player Nonzero-Sum ω-Regular Games. Vol.
3653, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 413–27, doi:10.1007/11539452_32.
short: K. Chatterjee, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005,
pp. 413–427.
conference:
name: 'CONCUR: Concurrency Theory'
date_created: 2018-12-11T12:05:44Z
date_published: 2005-09-05T00:00:00Z
date_updated: 2021-01-12T07:53:00Z
day: '05'
doi: 10.1007/11539452_32
extern: 1
intvolume: ' 3653'
month: '09'
page: 413 - 427
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '2267'
quality_controlled: 0
status: public
title: Two-player nonzero-sum ω-regular games
type: conference
volume: 3653
year: '2005'
...
---
_id: '3916'
abstract:
- lang: eng
text: Divergent reproductive interests of males and females often cause sexual conflict
[1] and [2]. Males of many species manipulate females by transferring seminal
fluids that boost female short-term fecundity while decreasing their life expectancy
and future reproductivity [3] and [4]. The life history of ants, however, is expected
to reduce sexual conflict; whereas most insect females show repeated phases of
mating and reproduction, antqueens mate only during a short period early in life
and undergo a lifelong commitment to their mates by storing sperm [5]. Furthermore,
sexual offspring can only be reared after a sterile worker force has been built
up [5]. Therefore, the males should also profit from a long female lifespan. In
the antCardiocondyla obscurior, mating indeed has a positive effect on the lifetime
reproductive success of queens. Queens that mated to either one fertile or one
sterilized male lived considerably longer and started laying eggs earlier than
virgin queens. Only queens that received viable sperm from fertile males showed
increased fecundity. The lack of a trade-off between fecundity and longevity is
unexpected, given evolutionary theories of aging [6]. Our data instead reveal
the existence of sexual cooperation in ants.
author:
- first_name: Alexandra
full_name: Schrempf, Alexandra
last_name: Schrempf
- first_name: Jürgen
full_name: Heinze, Jürgen
last_name: Heinze
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: 'Schrempf A, Heinze J, Cremer S. Sexual cooperation: mating increases longevity
in ant queens. Current Biology. 2005;15(3):267-270. doi:10.1016/j.cub.2005.01.036'
apa: 'Schrempf, A., Heinze, J., & Cremer, S. (2005). Sexual cooperation: mating
increases longevity in ant queens. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2005.01.036'
chicago: 'Schrempf, Alexandra, Jürgen Heinze, and Sylvia Cremer. “Sexual Cooperation:
Mating Increases Longevity in Ant Queens.” Current Biology. Cell Press,
2005. https://doi.org/10.1016/j.cub.2005.01.036.'
ieee: 'A. Schrempf, J. Heinze, and S. Cremer, “Sexual cooperation: mating increases
longevity in ant queens,” Current Biology, vol. 15, no. 3. Cell Press,
pp. 267–270, 2005.'
ista: 'Schrempf A, Heinze J, Cremer S. 2005. Sexual cooperation: mating increases
longevity in ant queens. Current Biology. 15(3), 267–270.'
mla: 'Schrempf, Alexandra, et al. “Sexual Cooperation: Mating Increases Longevity
in Ant Queens.” Current Biology, vol. 15, no. 3, Cell Press, 2005, pp.
267–70, doi:10.1016/j.cub.2005.01.036.'
short: A. Schrempf, J. Heinze, S. Cremer, Current Biology 15 (2005) 267–270.
date_created: 2018-12-11T12:05:52Z
date_published: 2005-02-08T00:00:00Z
date_updated: 2021-01-12T07:53:10Z
day: '08'
doi: 10.1016/j.cub.2005.01.036
extern: '1'
intvolume: ' 15'
issue: '3'
language:
- iso: eng
month: '02'
oa_version: None
page: 267 - 270
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '2238'
status: public
title: 'Sexual cooperation: mating increases longevity in ant queens'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2005'
...
---
_id: '3915'
abstract:
- lang: eng
text: "In the ant Cardiocondyla obscurior, wingless males compete with nestmate
males for access to female mating\r\npartners, leading to local mate competition
(LMC). Queen number varies between colonies, resulting in\r\nvariation in the
strength of LMC. Cremer & Heinze (2002, Proceedings of the Royal Society of
London, Series B,\r\n269, 417–422) showed that colonies responded to increasing
queen number by producing a less femalebiased\r\nsex ratio, as predicted by LMC
theory. However, the proximate mechanisms responsible for this\r\nvariation in
the sex ratio could not be determined because the study was restricted to adult
sex ratios.With\r\nLMC, the primary sex ratio (proportion of haploid eggs laid
by the queen) is expected to be female biased,\r\nwhich lowers the conflict between
queens and workers over sex allocation. We compared the primary sex\r\nratios
laid by queens in monogynous and in polygynous experimental colonies of C. obscurior.
The\r\nproportion of haploid eggs laid by queens was significantly lower in single-queen
than in multiple-queen\r\ncolonies. Furthermore, queens rapidly adjusted their
primary sex ratios to changes in colony queen\r\nnumber. This is the first report
of an adaptive adjustment of the primary sex ratio in response to LMC by\r\nant
queens."
author:
- first_name: Ludivine
full_name: De Menten, Ludivine
last_name: De Menten
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
- first_name: Jürgen
full_name: Heinze, Jürgen
last_name: Heinze
- first_name: Serge
full_name: Aron, Serge
last_name: Aron
citation:
ama: De Menten L, Cremer S, Heinze J, Aron S. Primary sex ratio adjustment by ant
queens in response to local mate competition. Animal Behaviour. 2005;69(5):1031-1035.
doi:10.1016/j.anbehav.2004.09.005
apa: De Menten, L., Cremer, S., Heinze, J., & Aron, S. (2005). Primary sex ratio
adjustment by ant queens in response to local mate competition. Animal Behaviour.
Elsevier. https://doi.org/10.1016/j.anbehav.2004.09.005
chicago: De Menten, Ludivine, Sylvia Cremer, Jürgen Heinze, and Serge Aron. “Primary
Sex Ratio Adjustment by Ant Queens in Response to Local Mate Competition.” Animal
Behaviour. Elsevier, 2005. https://doi.org/10.1016/j.anbehav.2004.09.005.
ieee: L. De Menten, S. Cremer, J. Heinze, and S. Aron, “Primary sex ratio adjustment
by ant queens in response to local mate competition,” Animal Behaviour,
vol. 69, no. 5. Elsevier, pp. 1031–1035, 2005.
ista: De Menten L, Cremer S, Heinze J, Aron S. 2005. Primary sex ratio adjustment
by ant queens in response to local mate competition. Animal Behaviour. 69(5),
1031–1035.
mla: De Menten, Ludivine, et al. “Primary Sex Ratio Adjustment by Ant Queens in
Response to Local Mate Competition.” Animal Behaviour, vol. 69, no. 5,
Elsevier, 2005, pp. 1031–35, doi:10.1016/j.anbehav.2004.09.005.
short: L. De Menten, S. Cremer, J. Heinze, S. Aron, Animal Behaviour 69 (2005) 1031–1035.
date_created: 2018-12-11T12:05:52Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T07:53:10Z
day: '01'
doi: 10.1016/j.anbehav.2004.09.005
extern: '1'
intvolume: ' 69'
issue: '5'
language:
- iso: eng
month: '05'
oa_version: None
page: 1031 - 1035
publication: Animal Behaviour
publication_status: published
publisher: Elsevier
publist_id: '2237'
status: public
title: Primary sex ratio adjustment by ant queens in response to local mate competition
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 69
year: '2005'
...
---
_id: '4167'
abstract:
- lang: eng
text: In this study, we elucidate the roles of the winged-helix transcription factor
Foxa2 in ventral CNS development in zebrafish. Through cloning of monorail (mol),
which we find encodes the transcription factor Foxa2, and phenotypic analysis
of mol(-/-) embryos, we show that floorplate is induced in the absence of Foxa2
function but fails to further differentiate. In mol(-/-) mutants, expression of
Foxa and Hh family genes is not maintained in floorplate cells and lateral expansion
of the floorplate fails to occur. Our results suggest that this is due to defects
both in the regulation of Hh activity in medial floorplate cells as well as cell-autonomous
requirements for Foxa2 in the prospective laterally positioned floorplate cells
themselves. Foxa2 is also required for induction and/or patterning of several
distinct cell types in the ventral CNS. Serotonergic neurones of the raphe nucleus
and the trochlear motor nucleus are absent in mol(-/-) embryos, and oculomotor
and facial motoneurones ectopically occupy ventral CNS midline positions in the
midbrain and hindbrain. There is also a severe reduction of prospective oligodendrocytes
in the midbrain and hindbrain. Finally, in the absence of Foxa2, at least two
likely Hh pathway target genes are ectopically expressed in more dorsal regions
of the midbrain and hindbrain ventricular neuroepithelium, raising the possibility
that Foxa2 activity may normally be required to limit the range of action of secreted
Hh proteins.
article_processing_charge: No
author:
- first_name: Will
full_name: Norton, Will
last_name: Norton
- first_name: Maryam
full_name: Mangoli, Maryam
last_name: Mangoli
- first_name: Zsolt
full_name: Lele, Zsolt
last_name: Lele
- first_name: Hans
full_name: Pogoda, Hans
last_name: Pogoda
- first_name: Brianne
full_name: Diamond, Brianne
last_name: Diamond
- first_name: Sara
full_name: Mercurio, Sara
last_name: Mercurio
- first_name: Claire
full_name: Russell, Claire
last_name: Russell
- first_name: Hiroki
full_name: Teraoka, Hiroki
last_name: Teraoka
- first_name: Heather
full_name: Stickney, Heather
last_name: Stickney
- first_name: Gerd
full_name: Rauch, Gerd
last_name: Rauch
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
- first_name: Corinne
full_name: Houart, Corinne
last_name: Houart
- first_name: Thomas
full_name: Schilling, Thomas
last_name: Schilling
- first_name: Hans
full_name: Frohnhoefer, Hans
last_name: Frohnhoefer
- first_name: Sepand
full_name: Rastegar, Sepand
last_name: Rastegar
- first_name: Carl
full_name: Neumann, Carl
last_name: Neumann
- first_name: R Mark
full_name: Gardiner, R Mark
last_name: Gardiner
- first_name: Uwe
full_name: Strähle, Uwe
last_name: Strähle
- first_name: Robert
full_name: Geisler, Robert
last_name: Geisler
- first_name: Michelle
full_name: Rees, Michelle
last_name: Rees
- first_name: William
full_name: Talbot, William
last_name: Talbot
- first_name: Stephen
full_name: Wilson, Stephen
last_name: Wilson
citation:
ama: Norton W, Mangoli M, Lele Z, et al. Monorail/Foxa2 regulates floorplate differentiation
and specification of oligodendrocytes, serotonergic raphe neurones and cranial
motoneurones. Development. 2005;132(4):645-658. doi:10.1242/dev.01611
apa: Norton, W., Mangoli, M., Lele, Z., Pogoda, H., Diamond, B., Mercurio, S., …
Wilson, S. (2005). Monorail/Foxa2 regulates floorplate differentiation and specification
of oligodendrocytes, serotonergic raphe neurones and cranial motoneurones. Development.
Company of Biologists. https://doi.org/10.1242/dev.01611
chicago: Norton, Will, Maryam Mangoli, Zsolt Lele, Hans Pogoda, Brianne Diamond,
Sara Mercurio, Claire Russell, et al. “Monorail/Foxa2 Regulates Floorplate Differentiation
and Specification of Oligodendrocytes, Serotonergic Raphe Neurones and Cranial
Motoneurones.” Development. Company of Biologists, 2005. https://doi.org/10.1242/dev.01611.
ieee: W. Norton et al., “Monorail/Foxa2 regulates floorplate differentiation
and specification of oligodendrocytes, serotonergic raphe neurones and cranial
motoneurones,” Development, vol. 132, no. 4. Company of Biologists, pp.
645–658, 2005.
ista: Norton W, Mangoli M, Lele Z, Pogoda H, Diamond B, Mercurio S, Russell C, Teraoka
H, Stickney H, Rauch G, Heisenberg C-PJ, Houart C, Schilling T, Frohnhoefer H,
Rastegar S, Neumann C, Gardiner RM, Strähle U, Geisler R, Rees M, Talbot W, Wilson
S. 2005. Monorail/Foxa2 regulates floorplate differentiation and specification
of oligodendrocytes, serotonergic raphe neurones and cranial motoneurones. Development.
132(4), 645–658.
mla: Norton, Will, et al. “Monorail/Foxa2 Regulates Floorplate Differentiation and
Specification of Oligodendrocytes, Serotonergic Raphe Neurones and Cranial Motoneurones.”
Development, vol. 132, no. 4, Company of Biologists, 2005, pp. 645–58,
doi:10.1242/dev.01611.
short: W. Norton, M. Mangoli, Z. Lele, H. Pogoda, B. Diamond, S. Mercurio, C. Russell,
H. Teraoka, H. Stickney, G. Rauch, C.-P.J. Heisenberg, C. Houart, T. Schilling,
H. Frohnhoefer, S. Rastegar, C. Neumann, R.M. Gardiner, U. Strähle, R. Geisler,
M. Rees, W. Talbot, S. Wilson, Development 132 (2005) 645–658.
date_created: 2018-12-11T12:07:21Z
date_published: 2005-02-15T00:00:00Z
date_updated: 2021-01-12T07:55:00Z
day: '15'
doi: 10.1242/dev.01611
extern: '1'
intvolume: ' 132'
issue: '4'
language:
- iso: eng
month: '02'
oa_version: None
page: 645 - 658
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '1952'
status: public
title: Monorail/Foxa2 regulates floorplate differentiation and specification of oligodendrocytes,
serotonergic raphe neurones and cranial motoneurones
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2005'
...
---
_id: '4183'
abstract:
- lang: eng
text: The spreading of an epithelial cell sheet over a substrate is a common process
during embryogenesis. Typical examples include epiboly during zebrafish gastrulation
and Drosophila dorsal closure. We provide evidence that in both cases, actin-based
contraction of the leading edge of the epithelium is of critical importance.
acknowledgement: Poster Abstract
article_processing_charge: No
author:
- first_name: Mathias
full_name: Köppen, Mathias
last_name: Köppen
- first_name: Beatriz
full_name: Fernández, Beatriz
last_name: Fernández
- first_name: Lara
full_name: Carvalho, Lara
last_name: Carvalho
- first_name: António
full_name: Jacinto, António
last_name: Jacinto
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: Köppen M, Fernández B, Carvalho L, Jacinto A, Heisenberg C-PJ. Misshapen mediates
actin-based cell contraction during zebrafish epiboly and Drosophila dorsal closure.
Mechanisms of Development. 2005;122(Supplement 1):S112-S113. doi:10.1016/j.mod.2005.06.010
apa: Köppen, M., Fernández, B., Carvalho, L., Jacinto, A., & Heisenberg, C.-P.
J. (2005). Misshapen mediates actin-based cell contraction during zebrafish epiboly
and Drosophila dorsal closure. Mechanisms of Development. Elsevier. https://doi.org/10.1016/j.mod.2005.06.010
chicago: Köppen, Mathias, Beatriz Fernández, Lara Carvalho, António Jacinto, and
Carl-Philipp J Heisenberg. “Misshapen Mediates Actin-Based Cell Contraction during
Zebrafish Epiboly and Drosophila Dorsal Closure.” Mechanisms of Development.
Elsevier, 2005. https://doi.org/10.1016/j.mod.2005.06.010.
ieee: M. Köppen, B. Fernández, L. Carvalho, A. Jacinto, and C.-P. J. Heisenberg,
“Misshapen mediates actin-based cell contraction during zebrafish epiboly and
Drosophila dorsal closure,” Mechanisms of Development, vol. 122, no. Supplement
1. Elsevier, pp. S112–S113, 2005.
ista: Köppen M, Fernández B, Carvalho L, Jacinto A, Heisenberg C-PJ. 2005. Misshapen
mediates actin-based cell contraction during zebrafish epiboly and Drosophila
dorsal closure. Mechanisms of Development. 122(Supplement 1), S112–S113.
mla: Köppen, Mathias, et al. “Misshapen Mediates Actin-Based Cell Contraction during
Zebrafish Epiboly and Drosophila Dorsal Closure.” Mechanisms of Development,
vol. 122, no. Supplement 1, Elsevier, 2005, pp. S112–13, doi:10.1016/j.mod.2005.06.010.
short: M. Köppen, B. Fernández, L. Carvalho, A. Jacinto, C.-P.J. Heisenberg, Mechanisms
of Development 122 (2005) S112–S113.
date_created: 2018-12-11T12:07:27Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:55:07Z
day: '01'
doi: 10.1016/j.mod.2005.06.010
extern: '1'
intvolume: ' 122'
issue: Supplement 1
language:
- iso: eng
month: '01'
oa_version: None
page: S112 - S113
publication: Mechanisms of Development
publication_status: published
publisher: Elsevier
publist_id: '1936'
status: public
title: Misshapen mediates actin-based cell contraction during zebrafish epiboly and
Drosophila dorsal closure
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 122
year: '2005'
...
---
_id: '4367'
alternative_title:
- LNCS 3672
author:
- first_name: Andreas
full_name: Podelski,Andreas
last_name: Podelski
- first_name: Thomas
full_name: Thomas Wies
id: 447BFB88-F248-11E8-B48F-1D18A9856A87
last_name: Wies
citation:
ama: 'Podelski A, Wies T. Boolean Heaps. In: Springer; 2005:267-282. doi:1550'
apa: 'Podelski, A., & Wies, T. (2005). Boolean Heaps (pp. 267–282). Presented
at the SAS: Static Analysis Symposium, Springer. https://doi.org/1550'
chicago: Podelski, Andreas, and Thomas Wies. “Boolean Heaps,” 267–82. Springer,
2005. https://doi.org/1550.
ieee: 'A. Podelski and T. Wies, “Boolean Heaps,” presented at the SAS: Static Analysis
Symposium, 2005, pp. 267–282.'
ista: 'Podelski A, Wies T. 2005. Boolean Heaps. SAS: Static Analysis Symposium,
LNCS 3672, , 267–282.'
mla: Podelski, Andreas, and Thomas Wies. Boolean Heaps. Springer, 2005, pp.
267–82, doi:1550.
short: A. Podelski, T. Wies, in:, Springer, 2005, pp. 267–282.
conference:
name: 'SAS: Static Analysis Symposium'
date_created: 2018-12-11T12:08:29Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:56:27Z
day: '01'
doi: '1550'
extern: 1
month: '01'
page: 267 - 282
publication_status: published
publisher: Springer
publist_id: '1092'
quality_controlled: 0
status: public
title: Boolean Heaps
type: conference
year: '2005'
...
---
_id: '3143'
abstract:
- lang: eng
text: Two ETS transcription factors of the Pea3 subfamily are induced in subpopulations
of dorsal root ganglion (DRG) sensory and spinal motor neurons by target-derived
factors. Their expression controls late aspects of neuronal differentiation such
as target invasion and branching. Here, we show that the late onset of ETS gene
expression is an essential requirement for normal sensory neuron differentiation.
We provide genetic evidence in the mouse that precocious ETS expression in DRG
sensory neurons perturbs axonal projections, the acquisition of terminal differentiation
markers, and their dependence on neurotrophic support. Together, our findings
indicate that DRG sensory neurons exhibit a temporal developmental switch that
can be revealed by distinct responses to ETS transcription factor signaling at
sequential steps of neuronal maturation.
author:
- first_name: Simon
full_name: Simon Hippenmeyer
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Eline
full_name: Vrieseling, Eline
last_name: Vrieseling
- first_name: Markus
full_name: Sigrist, Markus
last_name: Sigrist
- first_name: Thomas
full_name: Portmann, Thomas
last_name: Portmann
- first_name: Celia
full_name: Laengle, Celia
last_name: Laengle
- first_name: David
full_name: Ladle, David R
last_name: Ladle
- first_name: Silvia
full_name: Arber, Silvia
last_name: Arber
citation:
ama: Hippenmeyer S, Vrieseling E, Sigrist M, et al. A developmental switch in the
response of DRG neurons to ETS transcription factor signaling. PLoS Biology.
2005;3(5):0878-0890. doi:10.1371/journal.pbio.0030159
apa: Hippenmeyer, S., Vrieseling, E., Sigrist, M., Portmann, T., Laengle, C., Ladle,
D., & Arber, S. (2005). A developmental switch in the response of DRG neurons
to ETS transcription factor signaling. PLoS Biology. Public Library of
Science. https://doi.org/10.1371/journal.pbio.0030159
chicago: Hippenmeyer, Simon, Eline Vrieseling, Markus Sigrist, Thomas Portmann,
Celia Laengle, David Ladle, and Silvia Arber. “A Developmental Switch in the Response
of DRG Neurons to ETS Transcription Factor Signaling.” PLoS Biology. Public
Library of Science, 2005. https://doi.org/10.1371/journal.pbio.0030159.
ieee: S. Hippenmeyer et al., “A developmental switch in the response of DRG
neurons to ETS transcription factor signaling,” PLoS Biology, vol. 3, no.
5. Public Library of Science, pp. 0878–0890, 2005.
ista: Hippenmeyer S, Vrieseling E, Sigrist M, Portmann T, Laengle C, Ladle D, Arber
S. 2005. A developmental switch in the response of DRG neurons to ETS transcription
factor signaling. PLoS Biology. 3(5), 0878–0890.
mla: Hippenmeyer, Simon, et al. “A Developmental Switch in the Response of DRG Neurons
to ETS Transcription Factor Signaling.” PLoS Biology, vol. 3, no. 5, Public
Library of Science, 2005, pp. 0878–90, doi:10.1371/journal.pbio.0030159.
short: S. Hippenmeyer, E. Vrieseling, M. Sigrist, T. Portmann, C. Laengle, D. Ladle,
S. Arber, PLoS Biology 3 (2005) 0878–0890.
date_created: 2018-12-11T12:01:38Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T07:41:21Z
day: '01'
doi: 10.1371/journal.pbio.0030159
extern: 1
intvolume: ' 3'
issue: '5'
month: '05'
page: 0878 - 0890
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '3552'
quality_controlled: 0
status: public
title: A developmental switch in the response of DRG neurons to ETS transcription
factor signaling
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
volume: 3
year: '2005'
...
---
_id: '3141'
abstract:
- lang: eng
text: The two actin-related subunits of the Arp2/3 complex, Arp2 and Arp3, are proposed
to form a pseudo actin dimer that nucleates actin polymerization. However, in
the crystal structure of the inactive complex, they are too far apart to form
such a nucleus. Here, we show using EM that yeast and bovine Arp2/3 complexes
exist in a distribution among open, intermediate and closed conformations. The
crystal structure docks well into the open conformation. The activator WASp binds
at the cleft between Arp2 and Arp3, and all WASp-bound complexes are closed. The
inhibitor coronin binds near the p35 subunit, and all coronin-bound complexes
are open. Activating and loss-of-function mutations in the p35 subunit skew conformational
distribution in opposite directions, closed and open, respectively. We conclude
that WASp stabilizes p35-dependent closure of the complex, holding Arp2 and Arp3
closer together to nucleate an actin filament.
author:
- first_name: Avital
full_name: Rodal, Avital A
last_name: Rodal
- first_name: Olga
full_name: Sokolova, Olga
last_name: Sokolova
- first_name: Deborah
full_name: Robins, Deborah B
last_name: Robins
- first_name: Karen
full_name: Daugherty, Karen M
last_name: Daugherty
- first_name: Simon
full_name: Simon Hippenmeyer
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Howard
full_name: Riezman, Howard
last_name: Riezman
- first_name: Nikolaus
full_name: Grigorieff, Nikolaus
last_name: Grigorieff
- first_name: Bruce
full_name: Goode, Bruce L
last_name: Goode
citation:
ama: Rodal A, Sokolova O, Robins D, et al. Conformational changes in the Arp2 3
complex leading to actin nucleation. Nature Structural and Molecular Biology.
2005;12(1):26-31. doi:10.1038/nsmb870
apa: Rodal, A., Sokolova, O., Robins, D., Daugherty, K., Hippenmeyer, S., Riezman,
H., … Goode, B. (2005). Conformational changes in the Arp2 3 complex leading to
actin nucleation. Nature Structural and Molecular Biology. Nature Publishing
Group. https://doi.org/10.1038/nsmb870
chicago: Rodal, Avital, Olga Sokolova, Deborah Robins, Karen Daugherty, Simon Hippenmeyer,
Howard Riezman, Nikolaus Grigorieff, and Bruce Goode. “Conformational Changes
in the Arp2 3 Complex Leading to Actin Nucleation.” Nature Structural and Molecular
Biology. Nature Publishing Group, 2005. https://doi.org/10.1038/nsmb870.
ieee: A. Rodal et al., “Conformational changes in the Arp2 3 complex leading
to actin nucleation,” Nature Structural and Molecular Biology, vol. 12,
no. 1. Nature Publishing Group, pp. 26–31, 2005.
ista: Rodal A, Sokolova O, Robins D, Daugherty K, Hippenmeyer S, Riezman H, Grigorieff
N, Goode B. 2005. Conformational changes in the Arp2 3 complex leading to actin
nucleation. Nature Structural and Molecular Biology. 12(1), 26–31.
mla: Rodal, Avital, et al. “Conformational Changes in the Arp2 3 Complex Leading
to Actin Nucleation.” Nature Structural and Molecular Biology, vol. 12,
no. 1, Nature Publishing Group, 2005, pp. 26–31, doi:10.1038/nsmb870.
short: A. Rodal, O. Sokolova, D. Robins, K. Daugherty, S. Hippenmeyer, H. Riezman,
N. Grigorieff, B. Goode, Nature Structural and Molecular Biology 12 (2005) 26–31.
date_created: 2018-12-11T12:01:38Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:41:21Z
day: '01'
doi: 10.1038/nsmb870
extern: 1
intvolume: ' 12'
issue: '1'
month: '01'
page: 26 - 31
publication: Nature Structural and Molecular Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '3554'
quality_controlled: 0
status: public
title: Conformational changes in the Arp2 3 complex leading to actin nucleation
type: journal_article
volume: 12
year: '2005'
...
---
_id: '3175'
abstract:
- lang: eng
text: This paper addresses the novel problem of automatically synthesizing an output
image from a large collection of different input images. The synthesized image,
called a digital tapestry, can be viewed as a visual summary or a virtual 'thumbnail'
of all the images in the input collection. The problem of creating the tapestry
is cast as a multi-class labeling problem such that each region in the tapestry
is constructed from input image blocks that are salient and such that neighboring
blocks satisfy spatial compatibility. This is formulated using a Markov Random
Field and optimized via the graph cut based expansion move algorithm. The standard
expansion move algorithm can only handle energies with metric terms, while our
energy contains non-metric (soft and hard) constraints. Therefore we propose two
novel contributions. First, we extend the expansion move algorithm for energy
functions with non-metric hard constraints. Secondly, we modify it for functions
with "almost" metric soft terms, and show that it gives good results
in practice. The proposed framework was tested on several consumer photograph
collections, and the results are presented.
author:
- first_name: Carsten
full_name: Rother, Carsten
last_name: Rother
- first_name: Sanjiv
full_name: Kumar, Sanjiv
last_name: Kumar
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Andrew
full_name: Blake, Andrew
last_name: Blake
citation:
ama: 'Rother C, Kumar S, Kolmogorov V, Blake A. Digital tapestry. In: Vol 1. IEEE;
2005:589-596. doi:10.1109/CVPR.2005.130'
apa: 'Rother, C., Kumar, S., Kolmogorov, V., & Blake, A. (2005). Digital tapestry
(Vol. 1, pp. 589–596). Presented at the CVPR: Computer Vision and Pattern Recognition,
IEEE. https://doi.org/10.1109/CVPR.2005.130'
chicago: Rother, Carsten, Sanjiv Kumar, Vladimir Kolmogorov, and Andrew Blake. “Digital
Tapestry,” 1:589–96. IEEE, 2005. https://doi.org/10.1109/CVPR.2005.130.
ieee: 'C. Rother, S. Kumar, V. Kolmogorov, and A. Blake, “Digital tapestry,” presented
at the CVPR: Computer Vision and Pattern Recognition, 2005, vol. 1, pp. 589–596.'
ista: 'Rother C, Kumar S, Kolmogorov V, Blake A. 2005. Digital tapestry. CVPR: Computer
Vision and Pattern Recognition vol. 1, 589–596.'
mla: Rother, Carsten, et al. Digital Tapestry. Vol. 1, IEEE, 2005, pp. 589–96,
doi:10.1109/CVPR.2005.130.
short: C. Rother, S. Kumar, V. Kolmogorov, A. Blake, in:, IEEE, 2005, pp. 589–596.
conference:
name: 'CVPR: Computer Vision and Pattern Recognition'
date_created: 2018-12-11T12:01:50Z
date_published: 2005-07-25T00:00:00Z
date_updated: 2021-01-12T07:41:35Z
day: '25'
doi: 10.1109/CVPR.2005.130
extern: 1
intvolume: ' 1'
main_file_link:
- open_access: '0'
url: http://research.microsoft.com/en-us/um/people/ablake/papers/ablake/rother_cvpr05.pdf
month: '07'
page: 589 - 596
publication_status: published
publisher: IEEE
publist_id: '3503'
quality_controlled: 0
status: public
title: Digital tapestry
type: conference
volume: 1
year: '2005'
...
---
_id: '3176'
abstract:
- lang: eng
text: |
This paper demonstrates the high quality, real-time segmentation techniques. We achieve real-time segmentation of foreground from background layers in stereo video sequences. Automatic separation of layers from colour/contrast or from stereo alone is known to be error-prone. Here, colour, contrast and stereo matching information are fused to infer layers accurately and efficiently. The first algorithm, layered dynamic programming (LDP), solves stereo in an extended 6-state space that represents both foreground/background layers and occluded regions. The stereo-match likelihood is then fused with a contrast-sensitive colour model that is learned on the fly, and stereo disparities are obtained by dynamic programming. The second algorithm, layered graph cut (LGC), does not directly solve stereo. Instead the stereo match likelihood is marginalised over foreground and background hypotheses, and fused with a contrast-sensitive colour model like the one used in LDP. Segmentation is solved efficiently by ternary graph cut. Both algorithms are evaluated with respect to ground truth data and found to have similar performance, substantially better than stereo or colour/contrast alone. However, their characteristics with respect to computational efficiency are rather different. The algorithms are demonstrated in the application of background substitution and shown to give good quality composite video output.
author:
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Antonio
full_name: Criminisi, Antonio
last_name: Criminisi
- first_name: Andrew
full_name: Blake, Andrew
last_name: Blake
- first_name: Geoffrey
full_name: Cross, Geoffrey
last_name: Cross
- first_name: Carsten
full_name: Rother, Carsten
last_name: Rother
citation:
ama: 'Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. Bi-layer segmentation
of binocular stereo video. In: IEEE; 2005:1186-1186. doi:10.1109/CVPR.2005.90'
apa: 'Kolmogorov, V., Criminisi, A., Blake, A., Cross, G., & Rother, C. (2005).
Bi-layer segmentation of binocular stereo video (pp. 1186–1186). Presented at
the CVPR: Computer Vision and Pattern Recognition, IEEE. https://doi.org/10.1109/CVPR.2005.90'
chicago: Kolmogorov, Vladimir, Antonio Criminisi, Andrew Blake, Geoffrey Cross,
and Carsten Rother. “Bi-Layer Segmentation of Binocular Stereo Video,” 1186–1186.
IEEE, 2005. https://doi.org/10.1109/CVPR.2005.90.
ieee: 'V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, and C. Rother, “Bi-layer
segmentation of binocular stereo video,” presented at the CVPR: Computer Vision
and Pattern Recognition, 2005, pp. 1186–1186.'
ista: 'Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. 2005. Bi-layer segmentation
of binocular stereo video. CVPR: Computer Vision and Pattern Recognition, 1186–1186.'
mla: Kolmogorov, Vladimir, et al. Bi-Layer Segmentation of Binocular Stereo Video.
IEEE, 2005, pp. 1186–1186, doi:10.1109/CVPR.2005.90.
short: V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, C. Rother, in:, IEEE, 2005,
pp. 1186–1186.
conference:
name: 'CVPR: Computer Vision and Pattern Recognition'
date_created: 2018-12-11T12:01:50Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:41:35Z
day: '01'
doi: 10.1109/CVPR.2005.90
extern: 1
month: '01'
page: 1186 - 1186
publication_status: published
publisher: IEEE
publist_id: '3504'
quality_controlled: 0
status: public
title: Bi-layer segmentation of binocular stereo video
type: conference
year: '2005'
...
---
_id: '3183'
abstract:
- lang: eng
text: This paper describes two algorithms capable of real-time segmentation of foreground
from background layers in stereo video sequences. Automatic separation of layers
from colour/contrast or from stereo alone is known to be error-prone. Here, colour,
contrast and stereo matching information are fused to infer layers accurately
and efficiently. The first algorithm, Layered Dynamic Programming (LDP), solves
stereo in an extended 6-state space that represents both foreground/background
layers and occluded regions. The stereo-match likelihood is then fused with a
contrast-sensitive colour model that is learned on the fly, and stereo disparities
are obtained by dynamic programming. The second algorithm, Layered Graph Cut (LGC),
does not directly solve stereo. Instead the stereo match likelihood is marginalised
over foreground and background hypotheses, and fused with a contrast-sensitive
colour model like the one used in LDP. Segmentation is solved efficiently by ternary
graph cut. Both algorithms are evaluated with respect to ground truth data and
found to have similar perfomance, substantially better than stereo or colour/contrast
alone. However, their characteristics with respect to computational efficiency
are rather different. The algorithms are demonstrated in the application of background
substitution and shown to give good quality composite video output.
author:
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Antonio
full_name: Criminisi, Antonio
last_name: Criminisi
- first_name: Andrew
full_name: Blake, Andrew
last_name: Blake
- first_name: Geoffrey
full_name: Cross, Geoffrey
last_name: Cross
- first_name: Carsten
full_name: Rother, Carsten
last_name: Rother
citation:
ama: 'Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. Bi-layer segmentation
of binocular stereo video. In: Vol 2. IEEE; 2005:407-414. doi:10.1109/CVPR.2005.91'
apa: 'Kolmogorov, V., Criminisi, A., Blake, A., Cross, G., & Rother, C. (2005).
Bi-layer segmentation of binocular stereo video (Vol. 2, pp. 407–414). Presented
at the CVPR: Computer Vision and Pattern Recognition, IEEE. https://doi.org/10.1109/CVPR.2005.91'
chicago: Kolmogorov, Vladimir, Antonio Criminisi, Andrew Blake, Geoffrey Cross,
and Carsten Rother. “Bi-Layer Segmentation of Binocular Stereo Video,” 2:407–14.
IEEE, 2005. https://doi.org/10.1109/CVPR.2005.91.
ieee: 'V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, and C. Rother, “Bi-layer
segmentation of binocular stereo video,” presented at the CVPR: Computer Vision
and Pattern Recognition, 2005, vol. 2, pp. 407–414.'
ista: 'Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. 2005. Bi-layer segmentation
of binocular stereo video. CVPR: Computer Vision and Pattern Recognition vol.
2, 407–414.'
mla: Kolmogorov, Vladimir, et al. Bi-Layer Segmentation of Binocular Stereo Video.
Vol. 2, IEEE, 2005, pp. 407–14, doi:10.1109/CVPR.2005.91.
short: V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, C. Rother, in:, IEEE, 2005,
pp. 407–414.
conference:
name: 'CVPR: Computer Vision and Pattern Recognition'
date_created: 2018-12-11T12:01:52Z
date_published: 2005-07-25T00:00:00Z
date_updated: 2021-01-12T07:41:38Z
day: '25'
doi: 10.1109/CVPR.2005.91
extern: 1
intvolume: ' 2'
main_file_link:
- open_access: '0'
url: http://research.microsoft.com/pubs/67281/criminisi_cvpr2005.pdf
month: '07'
page: 407 - 414
publication_status: published
publisher: IEEE
publist_id: '3502'
quality_controlled: 0
status: public
title: Bi-layer segmentation of binocular stereo video
type: conference
volume: 2
year: '2005'
...
---
_id: '3182'
abstract:
- lang: eng
text: In the work of the authors (2003), we showed that graph cuts can find hypersurfaces
of globally minimal length (or area) under any Riemannian metric. Here we show
that graph cuts on directed regular grids can approximate a significantly more
general class of continuous non-symmetric metrics. Using submodularity condition
(Boros and Hammer, 2002 and Kolmogorov and Zabih, 2004), we obtain a tight characterization
of graph-representable metrics. Such "submodular" metrics have an elegant
geometric interpretation via hypersurface functionals combining length/area and
flux. Practically speaking, we attend 'geo-cuts' algorithm to a wider class of
geometrically motivated hypersurface functionals and show how to globally optimize
any combination of length/area and flux of a given vector field. The concept of
flux was recently introduced into computer vision by Vasilevskiy and Siddiqi (2002)
but it was mainly studied within variational framework so far. We are first to
show that flux can be integrated into graph cuts as well. Combining geometric
concepts of flux and length/area within the global optimization framework of graph
cuts allows principled discrete segmentation models and advances the slate of
the art for the graph cuts methods in vision. In particular we address the "shrinking"
problem of graph cuts, improve segmentation of long thin objects, and introduce
useful shape constraints.
author:
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Yuri
full_name: Boykov, Yuri
last_name: Boykov
citation:
ama: 'Kolmogorov V, Boykov Y. What metrics can be approximated by geo cuts or global
optimization of length area and flux. In: Vol 1. IEEE; 2005:564-571. doi:10.1109/ICCV.2005.252'
apa: 'Kolmogorov, V., & Boykov, Y. (2005). What metrics can be approximated
by geo cuts or global optimization of length area and flux (Vol. 1, pp. 564–571).
Presented at the ICCV: International Conference on Computer Vision, IEEE. https://doi.org/10.1109/ICCV.2005.252'
chicago: Kolmogorov, Vladimir, and Yuri Boykov. “What Metrics Can Be Approximated
by Geo Cuts or Global Optimization of Length Area and Flux,” 1:564–71. IEEE, 2005.
https://doi.org/10.1109/ICCV.2005.252.
ieee: 'V. Kolmogorov and Y. Boykov, “What metrics can be approximated by geo cuts
or global optimization of length area and flux,” presented at the ICCV: International
Conference on Computer Vision, 2005, vol. 1, pp. 564–571.'
ista: 'Kolmogorov V, Boykov Y. 2005. What metrics can be approximated by geo cuts
or global optimization of length area and flux. ICCV: International Conference
on Computer Vision vol. 1, 564–571.'
mla: Kolmogorov, Vladimir, and Yuri Boykov. What Metrics Can Be Approximated
by Geo Cuts or Global Optimization of Length Area and Flux. Vol. 1, IEEE,
2005, pp. 564–71, doi:10.1109/ICCV.2005.252.
short: V. Kolmogorov, Y. Boykov, in:, IEEE, 2005, pp. 564–571.
conference:
name: 'ICCV: International Conference on Computer Vision'
date_created: 2018-12-11T12:01:52Z
date_published: 2005-12-05T00:00:00Z
date_updated: 2021-01-12T07:41:38Z
day: '05'
doi: 10.1109/ICCV.2005.252
extern: 1
intvolume: ' 1'
month: '12'
page: 564 - 571
publication_status: published
publisher: IEEE
publist_id: '3501'
quality_controlled: 0
status: public
title: What metrics can be approximated by geo cuts or global optimization of length
area and flux
type: conference
volume: 1
year: '2005'
...
---
_id: '3181'
abstract:
- lang: eng
text: Tree-reweighted max-product (TRW) message passing [9] is a modified form of
the ordinary max-product algorithm for attempting to find minimal energy configurations
in Markov random field with cycles. For a TRW fixed point satisfying the strong
tree agreement condition, the algorithm outputs a configuration that is provably
optimal. In this paper, we focus on the case of binary variables with pairwise
couplings, and establish stronger properties of TRW fixed points that satisfy
only the milder condition of weak tree agreement (WTA). First, we demonstrate
how it is possible to identify part of the optimal solution - i.e., a provably
optimal solution for a subset of nodes - without knowing a complete solution.
Second, we show that for submodular functions, a WTA fixed point always yields
a globally optimal solution. We establish that for binary variables, any WTA fixed
point always achieves the global maximum of the linear programming relaxation
underlying the TRW method.
author:
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Martin
full_name: Wainwright, Martin J
last_name: Wainwright
citation:
ama: 'Kolmogorov V, Wainwright M. On the optimality of tree reweighted max product
message passing. In: AUAI Press; 2005:316-323.'
apa: 'Kolmogorov, V., & Wainwright, M. (2005). On the optimality of tree reweighted
max product message passing (pp. 316–323). Presented at the UAI: Uncertainty in
Artificial Intelligence, AUAI Press.'
chicago: Kolmogorov, Vladimir, and Martin Wainwright. “On the Optimality of Tree
Reweighted Max Product Message Passing,” 316–23. AUAI Press, 2005.
ieee: 'V. Kolmogorov and M. Wainwright, “On the optimality of tree reweighted max
product message passing,” presented at the UAI: Uncertainty in Artificial Intelligence,
2005, pp. 316–323.'
ista: 'Kolmogorov V, Wainwright M. 2005. On the optimality of tree reweighted max
product message passing. UAI: Uncertainty in Artificial Intelligence, 316–323.'
mla: Kolmogorov, Vladimir, and Martin Wainwright. On the Optimality of Tree Reweighted
Max Product Message Passing. AUAI Press, 2005, pp. 316–23.
short: V. Kolmogorov, M. Wainwright, in:, AUAI Press, 2005, pp. 316–323.
conference:
name: 'UAI: Uncertainty in Artificial Intelligence'
date_created: 2018-12-11T12:01:51Z
date_published: 2005-07-01T00:00:00Z
date_updated: 2021-01-12T07:41:38Z
day: '01'
extern: 1
main_file_link:
- open_access: '0'
url: http://research.microsoft.com/pubs/67405/trw_opt_uai05.pdf
month: '07'
page: 316 - 323
publication_status: published
publisher: AUAI Press
publist_id: '3500'
quality_controlled: 0
status: public
title: On the optimality of tree reweighted max product message passing
type: conference
year: '2005'
...
---
_id: '3417'
abstract:
- lang: eng
text: Recently, direct measurements of forces stabilizing single proteins or individual
receptor–ligand bonds became possible with ultra-sensitive force probe methods
like the atomic force microscope (AFM). In force spectroscopy experiments using
AFM, a single molecule or receptor–ligand pair is tethered between the tip of
a micromachined cantilever and a supporting surface. While the molecule is stretched,
forces are measured by the deflection of the cantilever and plotted against extension,
yielding a force spectrum characteristic for each biomolecular system. In order
to obtain statistically relevant results, several hundred to thousand single-molecule
experiments have to be performed, each resulting in a unique force spectrum. We
developed software and algorithms to analyse large numbers of force spectra. Our
algorithms include the fitting polymer extension models to force peaks as well
as the automatic alignment of spectra. The aligned spectra allowed recognition
of patterns of peaks across different spectra. We demonstrate the capabilities
of our software by analysing force spectra that were recorded by unfolding single
transmembrane proteins such as bacteriorhodopsin and NhaA. Different unfolding
pathways were detected by classifying peak patterns. Deviant spectra, e.g. those
with no attachment or erratic peaks, can be easily identified. The software is
based on the programming language C++, the GNU Scientific Library (GSL), the software
WaveMetrics IGOR Pro and available open-source at http://bioinformatics.org/fskit/.
author:
- first_name: Michael
full_name: Kuhn, Michael
last_name: Kuhn
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Maurice
full_name: Hubain, Maurice
last_name: Hubain
- first_name: Daniel
full_name: Mueller, Daniel J
last_name: Mueller
citation:
ama: Kuhn M, Janovjak HL, Hubain M, Mueller D. Automated alignment and pattern recognition
of single-molecule force spectroscopy data. Journal of Microscopy. 2005;218(2):125-132.
doi:10.1111/j.1365-2818.2005.01478.x
apa: Kuhn, M., Janovjak, H. L., Hubain, M., & Mueller, D. (2005). Automated
alignment and pattern recognition of single-molecule force spectroscopy data.
Journal of Microscopy. Wiley-Blackwell. https://doi.org/10.1111/j.1365-2818.2005.01478.x
chicago: Kuhn, Michael, Harald L Janovjak, Maurice Hubain, and Daniel Mueller. “Automated
Alignment and Pattern Recognition of Single-Molecule Force Spectroscopy Data.”
Journal of Microscopy. Wiley-Blackwell, 2005. https://doi.org/10.1111/j.1365-2818.2005.01478.x.
ieee: M. Kuhn, H. L. Janovjak, M. Hubain, and D. Mueller, “Automated alignment and
pattern recognition of single-molecule force spectroscopy data,” Journal of
Microscopy, vol. 218, no. 2. Wiley-Blackwell, pp. 125–132, 2005.
ista: Kuhn M, Janovjak HL, Hubain M, Mueller D. 2005. Automated alignment and pattern
recognition of single-molecule force spectroscopy data. Journal of Microscopy.
218(2), 125–132.
mla: Kuhn, Michael, et al. “Automated Alignment and Pattern Recognition of Single-Molecule
Force Spectroscopy Data.” Journal of Microscopy, vol. 218, no. 2, Wiley-Blackwell,
2005, pp. 125–32, doi:10.1111/j.1365-2818.2005.01478.x.
short: M. Kuhn, H.L. Janovjak, M. Hubain, D. Mueller, Journal of Microscopy 218
(2005) 125–132.
date_created: 2018-12-11T12:03:13Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T07:43:20Z
day: '01'
doi: 10.1111/j.1365-2818.2005.01478.x
extern: 1
intvolume: ' 218'
issue: '2'
month: '05'
page: 125 - 132
publication: Journal of Microscopy
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2984'
quality_controlled: 0
status: public
title: Automated alignment and pattern recognition of single-molecule force spectroscopy
data
type: journal_article
volume: 218
year: '2005'
...
---
_id: '3416'
abstract:
- lang: eng
text: In the last decade atomic force microscopy has been used to measure the mechanical
stability of single proteins. These force spectroscopy experiments have shown
that many water-soluble and membrane proteins unfold via one or more intermediates.
Recently, Li and co-workers found a linear correlation between the unfolding force
of the native state and the intermediate in fibronectin, which they suggested
indicated the presence of a molecular memory or multiple unfolding pathways (1).
Here, we apply two independent methods in combination with Monte Carlo simulations
to analyze the unfolding of α-helices E and D of bacteriorhodopsin (BR). We show
that correlation analysis of unfolding forces is very sensitive to errors in force
calibration of the instrument. In contrast, a comparison of relative forces provides
a robust measure for the stability of unfolding intermediates. The proposed approach
detects three energetically different states of α-helices E and D in trimeric
BR. These states are not observed for monomeric BR and indicate that substantial
information is hidden in forced unfolding experiments of single proteins.
author:
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Tanuj
full_name: Sapra, Tanuj K
last_name: Sapra
- first_name: Daniel
full_name: Mueller, Daniel J
last_name: Mueller
citation:
ama: Janovjak HL, Sapra T, Mueller D. Complex stability of single proteins explored
by forced unfolding experiments. Biophysical Journal. 2005;88(5):37-39.
doi:10.1529/biophysj.105.059774
apa: Janovjak, H. L., Sapra, T., & Mueller, D. (2005). Complex stability of
single proteins explored by forced unfolding experiments. Biophysical Journal.
Biophysical Society. https://doi.org/10.1529/biophysj.105.059774
chicago: Janovjak, Harald L, Tanuj Sapra, and Daniel Mueller. “Complex Stability
of Single Proteins Explored by Forced Unfolding Experiments.” Biophysical Journal.
Biophysical Society, 2005. https://doi.org/10.1529/biophysj.105.059774.
ieee: H. L. Janovjak, T. Sapra, and D. Mueller, “Complex stability of single proteins
explored by forced unfolding experiments,” Biophysical Journal, vol. 88,
no. 5. Biophysical Society, pp. 37–39, 2005.
ista: Janovjak HL, Sapra T, Mueller D. 2005. Complex stability of single proteins
explored by forced unfolding experiments. Biophysical Journal. 88(5), 37–39.
mla: Janovjak, Harald L., et al. “Complex Stability of Single Proteins Explored
by Forced Unfolding Experiments.” Biophysical Journal, vol. 88, no. 5,
Biophysical Society, 2005, pp. 37–39, doi:10.1529/biophysj.105.059774.
short: H.L. Janovjak, T. Sapra, D. Mueller, Biophysical Journal 88 (2005) 37–39.
date_created: 2018-12-11T12:03:13Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T07:43:19Z
day: '01'
doi: 10.1529/biophysj.105.059774
extern: 1
intvolume: ' 88'
issue: '5'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1305525/
month: '05'
oa: 1
page: 37 - 39
publication: Biophysical Journal
publication_status: published
publisher: Biophysical Society
publist_id: '2985'
quality_controlled: 0
status: public
title: Complex stability of single proteins explored by forced unfolding experiments
type: journal_article
volume: 88
year: '2005'
...
---
_id: '3418'
abstract:
- lang: eng
text: Atomic force microscopy (AFM) allows the critical forces that unfold single
proteins and rupture individual receptor–ligand bonds to be measured. To derive
the shape of the energy landscape, the dynamic strength of the system is probed
at different force loading rates. This is usually achieved by varying the pulling
speed between a few nm/s and a few mgrm/s, although for a more complete investigation
of the kinetic properties higher speeds are desirable. Above 10 mgrm/s, the hydrodynamic
drag force acting on the AFM cantilever reaches the same order of magnitude as
the molecular forces. This has limited the maximum pulling speed in AFM single-molecule
force spectroscopy experiments. Here, we present an approach for considering these
hydrodynamic effects, thereby allowing a correct evaluation of AFM force measurements
recorded over an extended range of pulling speeds (and thus loading rates). To
support and illustrate our theoretical considerations, we experimentally evaluated
the mechanical unfolding of a multi-domain protein recorded at 30 mgrm/s pulling
speed.
author:
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Jens
full_name: Struckmeier, Jens
last_name: Struckmeier
- first_name: Daniel
full_name: Mueller, Daniel J
last_name: Mueller
citation:
ama: Janovjak HL, Struckmeier J, Mueller D. Hydrodynamic effects in fast AFM single
molecule force measurements. European Biophysics Journal. 2005;34(1):91-96.
doi:10.1007/s00249-004-0430-3
apa: Janovjak, H. L., Struckmeier, J., & Mueller, D. (2005). Hydrodynamic effects
in fast AFM single molecule force measurements. European Biophysics Journal.
Springer. https://doi.org/10.1007/s00249-004-0430-3
chicago: Janovjak, Harald L, Jens Struckmeier, and Daniel Mueller. “Hydrodynamic
Effects in Fast AFM Single Molecule Force Measurements.” European Biophysics
Journal. Springer, 2005. https://doi.org/10.1007/s00249-004-0430-3.
ieee: H. L. Janovjak, J. Struckmeier, and D. Mueller, “Hydrodynamic effects in fast
AFM single molecule force measurements,” European Biophysics Journal, vol.
34, no. 1. Springer, pp. 91–96, 2005.
ista: Janovjak HL, Struckmeier J, Mueller D. 2005. Hydrodynamic effects in fast
AFM single molecule force measurements. European Biophysics Journal. 34(1), 91–96.
mla: Janovjak, Harald L., et al. “Hydrodynamic Effects in Fast AFM Single Molecule
Force Measurements.” European Biophysics Journal, vol. 34, no. 1, Springer,
2005, pp. 91–96, doi:10.1007/s00249-004-0430-3.
short: H.L. Janovjak, J. Struckmeier, D. Mueller, European Biophysics Journal 34
(2005) 91–96.
date_created: 2018-12-11T12:03:14Z
date_published: 2005-02-01T00:00:00Z
date_updated: 2021-01-12T07:43:20Z
day: '01'
doi: 10.1007/s00249-004-0430-3
extern: 1
intvolume: ' 34'
issue: '1'
month: '02'
page: 91 - 96
publication: European Biophysics Journal
publication_status: published
publisher: Springer
publist_id: '2983'
quality_controlled: 0
status: public
title: Hydrodynamic effects in fast AFM single molecule force measurements
type: journal_article
volume: 34
year: '2005'
...
---
_id: '3433'
author:
- first_name: Jonathan P
full_name: Jonathan Bollback
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
citation:
ama: 'Bollback JP. Posterior mapping and posterior predictive distributions. In:
Nielsen R, ed. Statistical Methods in Molecular Evolution. Springer; 2005:439-462.
doi:10.1007/0-387-27733-1'
apa: Bollback, J. P. (2005). Posterior mapping and posterior predictive distributions.
In R. Nielsen (Ed.), Statistical methods in Molecular Evolution (pp. 439–462).
Springer. https://doi.org/10.1007/0-387-27733-1
chicago: Bollback, Jonathan P. “Posterior Mapping and Posterior Predictive Distributions.”
In Statistical Methods in Molecular Evolution, edited by Rasmus Nielsen,
439–62. Springer, 2005. https://doi.org/10.1007/0-387-27733-1.
ieee: J. P. Bollback, “Posterior mapping and posterior predictive distributions,”
in Statistical methods in Molecular Evolution, R. Nielsen, Ed. Springer,
2005, pp. 439–462.
ista: 'Bollback JP. 2005.Posterior mapping and posterior predictive distributions.
In: Statistical methods in Molecular Evolution. , 439–462.'
mla: Bollback, Jonathan P. “Posterior Mapping and Posterior Predictive Distributions.”
Statistical Methods in Molecular Evolution, edited by Rasmus Nielsen, Springer,
2005, pp. 439–62, doi:10.1007/0-387-27733-1.
short: J.P. Bollback, in:, R. Nielsen (Ed.), Statistical Methods in Molecular Evolution,
Springer, 2005, pp. 439–462.
date_created: 2018-12-11T12:03:18Z
date_published: 2005-04-21T00:00:00Z
date_updated: 2021-01-12T07:43:26Z
day: '21'
doi: 10.1007/0-387-27733-1
editor:
- first_name: Rasmus
full_name: Nielsen, Rasmus
last_name: Nielsen
extern: 1
month: '04'
page: 439 - 462
publication: Statistical methods in Molecular Evolution
publication_status: published
publisher: Springer
publist_id: '2967'
quality_controlled: 0
status: public
title: Posterior mapping and posterior predictive distributions
type: book_chapter
year: '2005'
...
---
_id: '3509'
abstract:
- lang: eng
text: Methods, apparatus and computer program products can generate light weight
but highly realistic and accurate colored models of three-dimensional colored
objects. The colored model may be generated from a second plurality of points
that define a coarse digital representation of the surface and at least one texture
map containing information derived from a first plurality of colored points that
define a fine digital representation of the surface. This derivation is achieved
by mapping points within the texture map to the fine digital representation of
the three-dimensional surface. Colored scan data may be used to construct the
fine digital representation as a triangulated surface (i.e., triangulation) using
a wrapping operation.
applicant:
- Raindrop Geomagic, Inc.
article_processing_charge: No
author:
- first_name: Steven
full_name: Williams, Steven
last_name: Williams
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Ping
full_name: Fu, Ping
last_name: Fu
citation:
ama: Williams S, Edelsbrunner H, Fu P. Methods, apparatus and computer program products
for modeling three-dimensional colored objects. 2005.
apa: Williams, S., Edelsbrunner, H., & Fu, P. (2005). Methods, apparatus and
computer program products for modeling three-dimensional colored objects.
chicago: Williams, Steven, Herbert Edelsbrunner, and Ping Fu. “Methods, Apparatus
and Computer Program Products for Modeling Three-Dimensional Colored Objects,”
2005.
ieee: S. Williams, H. Edelsbrunner, and P. Fu, “Methods, apparatus and computer
program products for modeling three-dimensional colored objects.” 2005.
ista: Williams S, Edelsbrunner H, Fu P. 2005. Methods, apparatus and computer program
products for modeling three-dimensional colored objects.
mla: Williams, Steven, et al. Methods, Apparatus and Computer Program Products
for Modeling Three-Dimensional Colored Objects. 2005.
short: S. Williams, H. Edelsbrunner, P. Fu, (2005).
date_created: 2018-12-11T12:03:42Z
date_published: 2005-02-08T00:00:00Z
date_updated: 2022-01-05T13:59:09Z
day: '08'
extern: '1'
ipc: G06T17/20 ; G06T15/04
ipn: US6853373B2
main_file_link:
- open_access: '1'
url: https://patents.google.com/patent/US6853373B2/
month: '02'
oa: 1
oa_version: Published Version
publication_date: 2005-02-08
publist_id: '2878'
status: public
title: Methods, apparatus and computer program products for modeling three-dimensional
colored objects
type: patent
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2005'
...
---
_id: '3558'
abstract:
- lang: eng
text: The tandem algorithm combines the marching cube algorithm for surface extraction
and the edge contraction algorithm for surface simplification in lock-step to
avoid the costly intermediate step of storing the entire extracted surface triangulation.
Beyond this basic strategy, we introduce refinements to prevent artifacts in the
resulting triangulation, first, by carefully monitoring the amount of simplification
during the process and, second, by driving the simplification toward a compromise
between shape approximation and mesh quality. We have implemented the algorithm
and used extensive computational experiments to document the effects of various
design options and to further fine-tune the algorithm.
acknowledgement: 'Partially supported the generated triangulations. Two questions
arise: “how do by NSF grant CCR-00-86013 (BioGeometry).'
author:
- first_name: Dominique
full_name: Attali, Dominique
last_name: Attali
- first_name: David
full_name: Cohen-Steiner, David
last_name: Cohen Steiner
- first_name: Herbert
full_name: Herbert Edelsbrunner
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Attali D, Cohen Steiner D, Edelsbrunner H. Extraction and simplification of
iso-surfaces in tandem. In: ACM; 2005:139-148.'
apa: 'Attali, D., Cohen Steiner, D., & Edelsbrunner, H. (2005). Extraction and
simplification of iso-surfaces in tandem (pp. 139–148). Presented at the SGP:
Eurographics Symposium on Geometry processing, ACM.'
chicago: Attali, Dominique, David Cohen Steiner, and Herbert Edelsbrunner. “Extraction
and Simplification of Iso-Surfaces in Tandem,” 139–48. ACM, 2005.
ieee: 'D. Attali, D. Cohen Steiner, and H. Edelsbrunner, “Extraction and simplification
of iso-surfaces in tandem,” presented at the SGP: Eurographics Symposium on Geometry
processing, 2005, pp. 139–148.'
ista: 'Attali D, Cohen Steiner D, Edelsbrunner H. 2005. Extraction and simplification
of iso-surfaces in tandem. SGP: Eurographics Symposium on Geometry processing,
139–148.'
mla: Attali, Dominique, et al. Extraction and Simplification of Iso-Surfaces
in Tandem. ACM, 2005, pp. 139–48.
short: D. Attali, D. Cohen Steiner, H. Edelsbrunner, in:, ACM, 2005, pp. 139–148.
conference:
name: 'SGP: Eurographics Symposium on Geometry processing'
date_created: 2018-12-11T12:03:57Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:44:18Z
day: '01'
extern: 1
main_file_link:
- open_access: '0'
url: http://dl.acm.org/citation.cfm?id=1281943
month: '01'
page: 139 - 148
publication_status: published
publisher: ACM
publist_id: '2827'
quality_controlled: 0
status: public
title: Extraction and simplification of iso-surfaces in tandem
type: conference
year: '2005'
...
---
_id: '3576'
abstract:
- lang: eng
text: |-
ears of research in biology have established that all cellular functions are deeply connected to the shape and dynamics of their molec- ular actors. As a response, structural molecular biology has emerged as a new line of experimental research focused on revealing the structure of biomolecules. The analysis of these structures has led to the development of computational biology, whose aim is to predict from molecular simulation properties inaccessible to experimental probes.
Here we focus on the representation of biomolecules used in these sim- ulations, and in particular on the hard sphere models. We review how the geometry of the union of such spheres is used to model their interactions with their environment, and how it has been included in simulations of molecular dynamics.
In parallel, we review our own developments in mathematics and com- puter science on understanding the geometry of unions of balls, and their applications in molecular simulation.
alternative_title:
- Mathematical Sciences Research Institute Publications
author:
- first_name: Herbert
full_name: Herbert Edelsbrunner
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Patrice
full_name: Koehl, Patrice
last_name: Koehl
citation:
ama: 'Edelsbrunner H, Koehl P. The geometry of biomolecular solvation. In: Combinatorial
and Computational Geometry. Vol 52. Cambridge University Press; 2005:243-275.'
apa: Edelsbrunner, H., & Koehl, P. (2005). The geometry of biomolecular solvation.
In Combinatorial and Computational Geometry (Vol. 52, pp. 243–275). Cambridge
University Press.
chicago: Edelsbrunner, Herbert, and Patrice Koehl. “The Geometry of Biomolecular
Solvation.” In Combinatorial and Computational Geometry, 52:243–75. Cambridge
University Press, 2005.
ieee: H. Edelsbrunner and P. Koehl, “The geometry of biomolecular solvation,” in
Combinatorial and Computational Geometry, vol. 52, Cambridge University
Press, 2005, pp. 243–275.
ista: 'Edelsbrunner H, Koehl P. 2005.The geometry of biomolecular solvation. In:
Combinatorial and Computational Geometry. Mathematical Sciences Research Institute
Publications, vol. 52, 243–275.'
mla: Edelsbrunner, Herbert, and Patrice Koehl. “The Geometry of Biomolecular Solvation.”
Combinatorial and Computational Geometry, vol. 52, Cambridge University
Press, 2005, pp. 243–75.
short: H. Edelsbrunner, P. Koehl, in:, Combinatorial and Computational Geometry,
Cambridge University Press, 2005, pp. 243–275.
date_created: 2018-12-11T12:04:03Z
date_published: 2005-08-08T00:00:00Z
date_updated: 2021-01-12T07:44:25Z
day: '08'
extern: 1
intvolume: ' 52'
main_file_link:
- open_access: '0'
url: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.117.3732
month: '08'
page: 243 - 275
publication: Combinatorial and Computational Geometry
publication_status: published
publisher: Cambridge University Press
publist_id: '2809'
quality_controlled: 0
status: public
title: The geometry of biomolecular solvation
type: book_chapter
volume: 52
year: '2005'
...
---
_id: '3612'
abstract:
- lang: eng
text: Left-right asymmetry in snails is intriguing because individuals of opposite
chirality are either unable to mate or can only mate with difficulty, so could
be reproductively isolated from each other. We have therefore investigated chiral
evolution in the Japanese land snail genus Euhadra to understand whether changes
in chirality have promoted speciation. In particular, we aimed to understand the
effect of the maternal inheritance of chirality on reproductive isolation and
gene flow. We found that the mitochondrial DNA phylogeny of Euhadra is consistent
with a single, relatively ancient evolution of sinistral species and suggests
either recent “single-gene speciation” or gene flow between chiral morphs that
are unable to mate. To clarify the conditions under which new chiral morphs might
evolve and whether single-gene speciation can occur, we developed a mathematical
model that is relevant to any maternal-effect gene. The model shows that reproductive
character displacement can promote the evolution of new chiral morphs, tending
to counteract the positive frequency-dependent selection that would otherwise
drive the more common chiral morph to fixation. This therefore suggests a general
mechanism as to how chiral variation arises in snails. In populations that contain
both chiral morphs, two different situations are then possible. In the first,
gene flow is substantial between morphs even without interchiral mating, because
of the maternal inheritance of chirality. In the second, reproductive isolation
is possible but unstable, and will also lead to gene flow if intrachiral matings
occasionally produce offspring with the opposite chirality. Together, the results
imply that speciation by chiral reversal is only meaningful in the context of
a complex biogeographical process, and so must usually involve other factors.
In order to understand the roles of reproductive character displacement and gene
flow in the chiral evolution of Euhadra, it will be necessary to investigate populations
in which both chiral morphs coexist.
author:
- first_name: Angus
full_name: Davison, Angus
last_name: Davison
- first_name: Satoshi
full_name: Chiba, Satoshi
last_name: Chiba
- first_name: Nicholas H
full_name: Nicholas Barton
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Bernard
full_name: Clarke, Bernard
last_name: Clarke
citation:
ama: Davison A, Chiba S, Barton NH, Clarke B. Speciation and gene flow between snails
of opposing chirality. PLoS Biology. 2005;3(9). doi:10.1371/journal.pbio.0030282
apa: Davison, A., Chiba, S., Barton, N. H., & Clarke, B. (2005). Speciation
and gene flow between snails of opposing chirality. PLoS Biology. Public
Library of Science. https://doi.org/10.1371/journal.pbio.0030282
chicago: Davison, Angus, Satoshi Chiba, Nicholas H Barton, and Bernard Clarke. “Speciation
and Gene Flow between Snails of Opposing Chirality.” PLoS Biology. Public
Library of Science, 2005. https://doi.org/10.1371/journal.pbio.0030282.
ieee: A. Davison, S. Chiba, N. H. Barton, and B. Clarke, “Speciation and gene flow
between snails of opposing chirality,” PLoS Biology, vol. 3, no. 9. Public
Library of Science, 2005.
ista: Davison A, Chiba S, Barton NH, Clarke B. 2005. Speciation and gene flow between
snails of opposing chirality. PLoS Biology. 3(9).
mla: Davison, Angus, et al. “Speciation and Gene Flow between Snails of Opposing
Chirality.” PLoS Biology, vol. 3, no. 9, Public Library of Science, 2005,
doi:10.1371/journal.pbio.0030282.
short: A. Davison, S. Chiba, N.H. Barton, B. Clarke, PLoS Biology 3 (2005).
date_created: 2018-12-11T12:04:14Z
date_published: 2005-08-09T00:00:00Z
date_updated: 2021-01-12T07:44:39Z
day: '09'
doi: 10.1371/journal.pbio.0030282
extern: 1
intvolume: ' 3'
issue: '9'
month: '08'
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '2771'
quality_controlled: 0
status: public
title: Speciation and gene flow between snails of opposing chirality
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
volume: 3
year: '2005'
...
---
_id: '3611'
abstract:
- lang: eng
text: 'We present two novel methods to infer mating patterns from genetic data.
They differ from existing statistical methods of parentage inference in that they
apply to populations that deviate from Hardy–Weinberg and linkage equilibrium,
and so are suited for the study of assortative mating in hybrid zones. The core
data set consists of genotypes at several loci for a number of full-sib clutches
of unknown parentage. Our inference is based throughout on estimates of allelic
associations within and across loci, such as heterozygote deficit and pairwise
linkage disequilibrium. In the first method, the most likely parents of a given
clutch are determined from the genotypic distribution of the associated adult
population, given an explicit model of nonrandom mating. This leads to estimates
of the strength of assortment. The second approach is based solely on the offspring
genotypes and relies on the fact that a linear relation exists between associations
among the offspring and those in the population of breeding pairs. We apply both
methods to a sample from the hybrid zone between the fire-bellied toads Bombina
bombina and B. variegata (Anura: Disco glossidae) in Croatia. Consistently, both
approaches provide no evidence for a departure from random mating, despite adequate
statistical power. Instead, B. variegata-like individuals among the adults contributed
disproportionately to the offspring cohort, consistent with their preference for
the type of breeding habitat in which this study was conducted.'
author:
- first_name: Beate
full_name: Nürnberger, Beate
last_name: Nürnberger
- first_name: Nicholas H
full_name: Nicholas Barton
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Loeske
full_name: Kruuk, Loeske E
last_name: Kruuk
- first_name: Timothy
full_name: Vines, Timothy H
last_name: Vines
citation:
ama: 'Nürnberger B, Barton NH, Kruuk L, Vines T. Mating patterns in a Bombina hybrid
zone: Inferences from adult and full sib genotypes. Heredity. 2005;94(2):247-257.
doi:10.1038/sj.hdy.6800607'
apa: 'Nürnberger, B., Barton, N. H., Kruuk, L., & Vines, T. (2005). Mating patterns
in a Bombina hybrid zone: Inferences from adult and full sib genotypes. Heredity.
Nature Publishing Group. https://doi.org/10.1038/sj.hdy.6800607'
chicago: 'Nürnberger, Beate, Nicholas H Barton, Loeske Kruuk, and Timothy Vines.
“Mating Patterns in a Bombina Hybrid Zone: Inferences from Adult and Full Sib
Genotypes.” Heredity. Nature Publishing Group, 2005. https://doi.org/10.1038/sj.hdy.6800607.'
ieee: 'B. Nürnberger, N. H. Barton, L. Kruuk, and T. Vines, “Mating patterns in
a Bombina hybrid zone: Inferences from adult and full sib genotypes,” Heredity,
vol. 94, no. 2. Nature Publishing Group, pp. 247–257, 2005.'
ista: 'Nürnberger B, Barton NH, Kruuk L, Vines T. 2005. Mating patterns in a Bombina
hybrid zone: Inferences from adult and full sib genotypes. Heredity. 94(2), 247–257.'
mla: 'Nürnberger, Beate, et al. “Mating Patterns in a Bombina Hybrid Zone: Inferences
from Adult and Full Sib Genotypes.” Heredity, vol. 94, no. 2, Nature Publishing
Group, 2005, pp. 247–57, doi:10.1038/sj.hdy.6800607.'
short: B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.
date_created: 2018-12-11T12:04:14Z
date_published: 2005-02-01T00:00:00Z
date_updated: 2021-01-12T07:44:39Z
day: '01'
doi: 10.1038/sj.hdy.6800607
extern: 1
intvolume: ' 94'
issue: '2'
month: '02'
page: 247 - 257
publication: Heredity
publication_status: published
publisher: Nature Publishing Group
publist_id: '2772'
quality_controlled: 0
status: public
title: 'Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib
genotypes'
type: journal_article
volume: 94
year: '2005'
...
---
_id: '3613'
abstract:
- lang: eng
text: 'The extent of genetic variation in fitness is a crucial issue in evolutionary
biology and yet remains largely unresolved. In Drosophila melanogaster, we have
devised a method that allows the net effects on fitness of heterozygous wild-type
chromosomes to be measured, by competing them against two different “balancer”
chromosomes. We have applied the method to a large sample of 40 wild-type third
chromosomes and have measured fitnesses of nonlethal chromosomes as well as chromosomes
bearing recessive lethals. The measurements were made in the environment to which
the population was adapted and did not involve inbreeding. The results show an
extraordinary similarity in the behavior of replicates of the same chromosome,
indicating consistent genetic effects on total fitness. Some invading chromosomes
increased rapidly and some slowly, and some rose to appreciable frequency after
several months, but then declined again: in every case, the same pattern was seen
in each replicate. We estimated relative fitnesses, rates of change of fitness,
and relative viabilities, for each chromosome. There were significant fluctuations
around the fitted model, which were also highly replicable. Wild-type chromosomes
varied substantially in their effects on heterozygous fitness, and these effects
vary through time, most likely as a result of genotype × environment interactions.'
author:
- first_name: Michael
full_name: Gardner, Michael P
last_name: Gardner
- first_name: Kevin
full_name: Fowler, Kevin
last_name: Fowler
- first_name: Nicholas H
full_name: Nicholas Barton
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Linda
full_name: Patridge, Linda
last_name: Patridge
citation:
ama: 'Gardner M, Fowler K, Barton NH, Patridge L. Genetic variation for total fitness
in Drosophila melanogaster: Complex yet replicable patterns. Genetics.
2005;169(3):1553-1571. doi:10.1534/genetics.104.032367'
apa: 'Gardner, M., Fowler, K., Barton, N. H., & Patridge, L. (2005). Genetic
variation for total fitness in Drosophila melanogaster: Complex yet replicable
patterns. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.104.032367'
chicago: 'Gardner, Michael, Kevin Fowler, Nicholas H Barton, and Linda Patridge.
“Genetic Variation for Total Fitness in Drosophila Melanogaster: Complex yet Replicable
Patterns.” Genetics. Genetics Society of America, 2005. https://doi.org/10.1534/genetics.104.032367.'
ieee: 'M. Gardner, K. Fowler, N. H. Barton, and L. Patridge, “Genetic variation
for total fitness in Drosophila melanogaster: Complex yet replicable patterns,”
Genetics, vol. 169, no. 3. Genetics Society of America, pp. 1553–1571,
2005.'
ista: 'Gardner M, Fowler K, Barton NH, Patridge L. 2005. Genetic variation for total
fitness in Drosophila melanogaster: Complex yet replicable patterns. Genetics.
169(3), 1553–1571.'
mla: 'Gardner, Michael, et al. “Genetic Variation for Total Fitness in Drosophila
Melanogaster: Complex yet Replicable Patterns.” Genetics, vol. 169, no.
3, Genetics Society of America, 2005, pp. 1553–71, doi:10.1534/genetics.104.032367.'
short: M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.
date_created: 2018-12-11T12:04:15Z
date_published: 2005-03-01T00:00:00Z
date_updated: 2021-01-12T07:44:40Z
day: '01'
doi: 10.1534/genetics.104.032367
extern: 1
intvolume: ' 169'
issue: '3'
month: '03'
page: 1553 - 1571
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '2770'
quality_controlled: 0
status: public
title: 'Genetic variation for total fitness in Drosophila melanogaster: Complex yet
replicable patterns'
type: journal_article
volume: 169
year: '2005'
...
---
_id: '3691'
abstract:
- lang: eng
text: In strictly pseudoconvex domains with smooth boundary, we prove a commutator
relationship between admissible integral operators, as introduced by Lieb and
Range, and smooth vector fields which are tangential at boundary points. This
makes it possible to gain estimates for admissible operators in function spaces
which involve tangential derivatives. Examples are given under with circumstances
these can be transformed into genuine Sobolev- and C k-estimates.
author:
- first_name: Christoph
full_name: Christoph Lampert
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: Lampert C. Boundary regularity of admissible operators. Publicacions Matemàtiques.
2005;49(1):179-195. doi:10.5565/PUBLMAT_49105_08
apa: Lampert, C. (2005). Boundary regularity of admissible operators. Publicacions
Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique.
https://doi.org/10.5565/PUBLMAT_49105_08
chicago: Lampert, Christoph. “Boundary Regularity of Admissible Operators.” Publicacions
Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique,
2005. https://doi.org/10.5565/PUBLMAT_49105_08.
ieee: C. Lampert, “Boundary regularity of admissible operators,” Publicacions
Matemàtiques, vol. 49, no. 1. Universitat Autònoma de Barcelona, Departament
de Matemàtique, pp. 179–195, 2005.
ista: Lampert C. 2005. Boundary regularity of admissible operators. Publicacions
Matemàtiques. 49(1), 179–195.
mla: Lampert, Christoph. “Boundary Regularity of Admissible Operators.” Publicacions
Matemàtiques, vol. 49, no. 1, Universitat Autònoma de Barcelona, Departament
de Matemàtique, 2005, pp. 179–95, doi:10.5565/PUBLMAT_49105_08.
short: C. Lampert, Publicacions Matemàtiques 49 (2005) 179–195.
date_created: 2018-12-11T12:04:38Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:48:59Z
day: '01'
doi: 10.5565/PUBLMAT_49105_08
extern: 1
intvolume: ' 49'
issue: '1'
month: '01'
page: 179 - 195
publication: Publicacions Matemàtiques
publication_status: published
publisher: Universitat Autònoma de Barcelona, Departament de Matemàtique
publist_id: '2673'
quality_controlled: 0
status: public
title: Boundary regularity of admissible operators
type: journal_article
volume: 49
year: '2005'
...
---
_id: '3721'
abstract:
- lang: eng
text: Recent advances in atomic force microscopy allowed globular and membrane proteins
to be mechanically unfolded on a single-molecule level. Presented is an extension
to the existing force spectroscopy experiments. While unfolding single bacteriorhodopsins
from native purple membranes, small oscillation amplitudes (6–9nm) were supplied
to the vertical displacement of the cantilever at a frequency of 3kHz. The phase
and amplitude response of the cantilever-protein system was converted to reveal
the elastic (conservative) and viscous (dissipative) contributions to the unfolding
process. The elastic response (stiffness) of the extended parts of the protein
were in the range of a few tens pN/nm and could be well described by the derivative
of the wormlike chain model. Discrete events in the viscous response coincided
with the unfolding of single secondary structure elements and were in the range
of 1μNs/m. In addition, these force modulation spectroscopy experiments revealed
novel mechanical unfolding intermediates of bacteriorhodopsin. We found that kinks
result in a loss of unfolding cooperativity in transmembrane helices. Reconstructing
force-distance spectra by the integration of amplitude-distance spectra verified
their position, offering a novel approach to detect intermediates during the forced
unfolding of single proteins.
author:
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Daniel
full_name: Mueller, Daniel J
last_name: Mueller
- first_name: Andrew
full_name: Humphris, Andrew D
last_name: Humphris
citation:
ama: Janovjak HL, Mueller D, Humphris A. Molecular force modulation spectroscopy
revealing the dynamic response of single bacteriorhodopsins. Biophysical Journal.
2005;88(2):1423-1431. doi:10.1529/biophysj.104.052746
apa: Janovjak, H. L., Mueller, D., & Humphris, A. (2005). Molecular force modulation
spectroscopy revealing the dynamic response of single bacteriorhodopsins. Biophysical
Journal. Biophysical Society. https://doi.org/10.1529/biophysj.104.052746
chicago: Janovjak, Harald L, Daniel Mueller, and Andrew Humphris. “Molecular Force
Modulation Spectroscopy Revealing the Dynamic Response of Single Bacteriorhodopsins.”
Biophysical Journal. Biophysical Society, 2005. https://doi.org/10.1529/biophysj.104.052746.
ieee: H. L. Janovjak, D. Mueller, and A. Humphris, “Molecular force modulation spectroscopy
revealing the dynamic response of single bacteriorhodopsins,” Biophysical Journal,
vol. 88, no. 2. Biophysical Society, pp. 1423–1431, 2005.
ista: Janovjak HL, Mueller D, Humphris A. 2005. Molecular force modulation spectroscopy
revealing the dynamic response of single bacteriorhodopsins. Biophysical Journal.
88(2), 1423–1431.
mla: Janovjak, Harald L., et al. “Molecular Force Modulation Spectroscopy Revealing
the Dynamic Response of Single Bacteriorhodopsins.” Biophysical Journal,
vol. 88, no. 2, Biophysical Society, 2005, pp. 1423–31, doi:10.1529/biophysj.104.052746.
short: H.L. Janovjak, D. Mueller, A. Humphris, Biophysical Journal 88 (2005) 1423–1431.
date_created: 2018-12-11T12:04:48Z
date_published: 2005-02-01T00:00:00Z
date_updated: 2021-01-12T07:51:43Z
day: '01'
doi: 10.1529/biophysj.104.052746
extern: 1
intvolume: ' 88'
issue: '2'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1305144/
month: '02'
oa: 1
page: 1423 - 1431
publication: Biophysical Journal
publication_status: published
publisher: Biophysical Society
publist_id: '2509'
quality_controlled: 0
status: public
title: Molecular force modulation spectroscopy revealing the dynamic response of single
bacteriorhodopsins
type: journal_article
volume: 88
year: '2005'
...
---
_id: '3741'
abstract:
- lang: eng
text: In an age of increasingly large data sets, investigators in many different
disciplines have turned to clustering as a tool for data analysis and exploration.
Existing clustering methods, however, typically depend on several nontrivial assumptions
about the structure of data. Here, we reformulate the clustering problem from
an information theoretic perspective that avoids many of these assumptions. In
particular, our formulation obviates the need for defining a cluster "prototype,"
does not require an a priori similarity metric, is invariant to changes in the
representation of the data, and naturally captures nonlinear relations. We apply
this approach to different domains and find that it consistently produces clusters
that are more coherent than those extracted by existing algorithms. Finally, our
approach provides a way of clustering based on collective notions of similarity
rather than the traditional pairwise measures.
author:
- first_name: N.
full_name: Slonim,N.
last_name: Slonim
- first_name: G.
full_name: Atwal,G.
last_name: Atwal
- first_name: Gasper
full_name: Gasper Tkacik
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
- first_name: William
full_name: Bialek, William S
last_name: Bialek
citation:
ama: Slonim N, Atwal G, Tkačik G, Bialek W. Information-based clustering. PNAS.
2005;102(51):18297-18302. doi:10.1073/pnas.0507432102
apa: Slonim, N., Atwal, G., Tkačik, G., & Bialek, W. (2005). Information-based
clustering. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.0507432102
chicago: Slonim, N., G. Atwal, Gašper Tkačik, and William Bialek. “Information-Based
Clustering.” PNAS. National Academy of Sciences, 2005. https://doi.org/10.1073/pnas.0507432102.
ieee: N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Information-based clustering,”
PNAS, vol. 102, no. 51. National Academy of Sciences, pp. 18297–18302,
2005.
ista: Slonim N, Atwal G, Tkačik G, Bialek W. 2005. Information-based clustering.
PNAS. 102(51), 18297–18302.
mla: Slonim, N., et al. “Information-Based Clustering.” PNAS, vol. 102, no.
51, National Academy of Sciences, 2005, pp. 18297–302, doi:10.1073/pnas.0507432102.
short: N. Slonim, G. Atwal, G. Tkačik, W. Bialek, PNAS 102 (2005) 18297–18302.
date_created: 2018-12-11T12:04:55Z
date_published: 2005-12-20T00:00:00Z
date_updated: 2021-01-12T07:51:52Z
day: '20'
doi: 10.1073/pnas.0507432102
extern: 1
intvolume: ' 102'
issue: '51'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1317937
month: '12'
oa: 1
page: 18297 - 18302
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '2490'
quality_controlled: 0
status: public
title: Information-based clustering
type: journal_article
volume: 102
year: '2005'
...
---
_id: '3746'
abstract:
- lang: eng
text: We address the practical problems of estimating the information relations
that characterize large networks. Building on methods developed for analysis of
the neural code, we show that reliable estimates of mutual information can be
obtained with manageable computational effort. The same methods allow estimation
of higher order, multi-information terms. These ideas are illustrated by analyses
of gene expression, financial markets, and consumer preferences. In each case,
information theoretic measures correlate with independent, intuitive measures
of the underlying structures in the system.
author:
- first_name: Noam
full_name: Slonim,Noam
last_name: Slonim
- first_name: Gurinder
full_name: Atwal,Gurinder S
last_name: Atwal
- first_name: Gasper
full_name: Gasper Tkacik
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
- first_name: William
full_name: Bialek, William S
last_name: Bialek
citation:
ama: Slonim N, Atwal G, Tkačik G, Bialek W. Estimating mutual information and multi-information
in large networks. ArXiv. 2005:1-11.
apa: Slonim, N., Atwal, G., Tkačik, G., & Bialek, W. (2005). Estimating mutual
information and multi-information in large networks. ArXiv. ArXiv.
chicago: Slonim, Noam, Gurinder Atwal, Gašper Tkačik, and William Bialek. “Estimating
Mutual Information and Multi-Information in Large Networks.” ArXiv. ArXiv,
2005.
ieee: N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Estimating mutual information
and multi-information in large networks,” ArXiv. ArXiv, pp. 1–11, 2005.
ista: Slonim N, Atwal G, Tkačik G, Bialek W. 2005. Estimating mutual information
and multi-information in large networks. ArXiv, 1–11, .
mla: Slonim, Noam, et al. “Estimating Mutual Information and Multi-Information in
Large Networks.” ArXiv, ArXiv, 2005, pp. 1–11.
short: N. Slonim, G. Atwal, G. Tkačik, W. Bialek, ArXiv (2005) 1–11.
date_created: 2018-12-11T12:04:56Z
date_published: 2005-02-03T00:00:00Z
date_updated: 2021-01-12T07:51:54Z
day: '03'
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/cs/0502017v1
month: '02'
oa: 1
page: 1 - 11
publication: ArXiv
publication_status: published
publisher: ArXiv
publist_id: '2484'
quality_controlled: 0
status: public
title: Estimating mutual information and multi-information in large networks
type: preprint
year: '2005'
...
---
_id: '3808'
abstract:
- lang: eng
text: Action potentials in central neurons are initiated near the axon initial segment,
propagate into the axon, and finally invade the presynaptic terminals, where they
trigger transmitter release. Voltage-gated Na(+) channels are key determinants
of excitability, but Na(+) channel density and properties in axons and presynaptic
terminals of cortical neurons have not been examined yet. In hippocampal mossy
fiber boutons, which emerge from parent axons en passant, Na(+) channels are very
abundant, with an estimated number of approximately 2000 channels per bouton.
Presynaptic Na(+) channels show faster inactivation kinetics than somatic channels,
suggesting differences between subcellular compartments of the same cell. Computational
analysis of action potential propagation in axon-multibouton structures reveals
that Na(+) channels in boutons preferentially amplify the presynaptic action potential
and enhance Ca(2+) inflow, whereas Na(+) channels in axons control the reliability
and speed of propagation. Thus, presynaptic and axonal Na(+) channels contribute
differentially to mossy fiber synaptic transmission.
author:
- first_name: Dominique
full_name: Engel, Dominique
last_name: Engel
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Engel D, Jonas PM. Presynaptic action potential amplification by voltage-gated
Na+ channels in hippocampal mossy fiber boutons. Neuron. 2005;45(3):405-417.
doi:10.1016/j.neuron.2004.12.048
apa: Engel, D., & Jonas, P. M. (2005). Presynaptic action potential amplification
by voltage-gated Na+ channels in hippocampal mossy fiber boutons. Neuron.
Elsevier. https://doi.org/10.1016/j.neuron.2004.12.048
chicago: Engel, Dominique, and Peter M Jonas. “Presynaptic Action Potential Amplification
by Voltage-Gated Na+ Channels in Hippocampal Mossy Fiber Boutons.” Neuron.
Elsevier, 2005. https://doi.org/10.1016/j.neuron.2004.12.048
.
ieee: D. Engel and P. M. Jonas, “Presynaptic action potential amplification by voltage-gated
Na+ channels in hippocampal mossy fiber boutons,” Neuron, vol. 45, no.
3. Elsevier, pp. 405–17, 2005.
ista: Engel D, Jonas PM. 2005. Presynaptic action potential amplification by voltage-gated
Na+ channels in hippocampal mossy fiber boutons. Neuron. 45(3), 405–17.
mla: Engel, Dominique, and Peter M. Jonas. “Presynaptic Action Potential Amplification
by Voltage-Gated Na+ Channels in Hippocampal Mossy Fiber Boutons.” Neuron,
vol. 45, no. 3, Elsevier, 2005, pp. 405–17, doi:10.1016/j.neuron.2004.12.048 .
short: D. Engel, P.M. Jonas, Neuron 45 (2005) 405–17.
date_created: 2018-12-11T12:05:17Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:52:21Z
day: '01'
doi: '10.1016/j.neuron.2004.12.048 '
extern: 1
intvolume: ' 45'
issue: '3'
month: '01'
page: 405 - 17
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '2400'
quality_controlled: 0
status: public
title: Presynaptic action potential amplification by voltage-gated Na+ channels in
hippocampal mossy fiber boutons
type: journal_article
volume: 45
year: '2005'
...
---
_id: '3892'
abstract:
- lang: eng
text: 'In 2-player non-zero-sum games, Nash equilibria capture the options for rational
behavior if each player attempts to maximize her payoff. In contrast to classical
game theory, we consider lexicographic objectives: first, each player tries to
maximize her own payoff, and then, the player tries to minimize the opponent''s
payoff. Such objectives arise naturally in the verification of systems with multiple
components. There, instead of proving that each component satisfies its specification
no matter how the other components behave, it often suffices to prove that each
component satisfies its specification provided that the other components satisfy
their specifications. We say that a Nash equilibrium is secure if it is an equilibrium
with respect to the lexicographic objectives of both players. We prove that in
graph games with Borel winning conditions, which include the games that arise
in verification, there may be several Nash equilibria, but there is always a unique
maximal payoff profile of a secure equilibrium. We show how this equilibrium can
be computed in the case of omega-regular winning conditions, and we characterize
the memory requirements of strategies that achieve the equilibrium.'
acknowledgement: |-
This research was supported in part by the ONR grant N00014-02-1-0671, the AFOSR MURI grant F49620-00-1-0327, and the NSF grant CCR-0225610.
This is an extended version of the paper “Games with Secure Equilibria” that appeared in the proceedings of Logic in Computer Science (LICS), 2004.
alternative_title:
- LNCS
author:
- first_name: Krishnendu
full_name: Krishnendu Chatterjee
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Marcin
full_name: Jurdziński, Marcin
last_name: Jurdziński
citation:
ama: 'Chatterjee K, Henzinger TA, Jurdziński M. Games with secure equilibria. In:
Vol 3657. Springer; 2005:141-161. doi:10.1007/11561163_7'
apa: 'Chatterjee, K., Henzinger, T. A., & Jurdziński, M. (2005). Games with
secure equilibria (Vol. 3657, pp. 141–161). Presented at the FMCO: Formal Methods
for Components and Objects, Springer. https://doi.org/10.1007/11561163_7'
chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Marcin Jurdziński. “Games
with Secure Equilibria,” 3657:141–61. Springer, 2005. https://doi.org/10.1007/11561163_7.
ieee: 'K. Chatterjee, T. A. Henzinger, and M. Jurdziński, “Games with secure equilibria,”
presented at the FMCO: Formal Methods for Components and Objects, 2005, vol. 3657,
pp. 141–161.'
ista: 'Chatterjee K, Henzinger TA, Jurdziński M. 2005. Games with secure equilibria.
FMCO: Formal Methods for Components and Objects, LNCS, vol. 3657, 141–161.'
mla: Chatterjee, Krishnendu, et al. Games with Secure Equilibria. Vol. 3657,
Springer, 2005, pp. 141–61, doi:10.1007/11561163_7.
short: K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, Springer, 2005, pp. 141–161.
conference:
name: 'FMCO: Formal Methods for Components and Objects'
date_created: 2018-12-11T12:05:44Z
date_published: 2005-09-19T00:00:00Z
date_updated: 2021-01-12T07:53:00Z
day: '19'
doi: 10.1007/11561163_7
extern: 1
intvolume: ' 3657'
month: '09'
page: 141 - 161
publication_status: published
publisher: Springer
publist_id: '2269'
quality_controlled: 0
status: public
title: Games with secure equilibria
type: conference
volume: 3657
year: '2005'
...
---
_id: '3902'
author:
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
- first_name: Jacobus
full_name: Boomsma, Jacobus
last_name: Boomsma
citation:
ama: 'Cremer S, Boomsma J. The drawback of mobility: invasive species in a globalised
world. In: Elsevier; 2005.'
apa: 'Cremer, S., & Boomsma, J. (2005). The drawback of mobility: invasive species
in a globalised world. Presented at the Marie Curie Conference, Elsevier.'
chicago: 'Cremer, Sylvia, and Jacobus Boomsma. “The Drawback of Mobility: Invasive
Species in a Globalised World.” Elsevier, 2005.'
ieee: 'S. Cremer and J. Boomsma, “The drawback of mobility: invasive species in
a globalised world,” presented at the Marie Curie Conference, 2005.'
ista: 'Cremer S, Boomsma J. 2005. The drawback of mobility: invasive species in
a globalised world. Marie Curie Conference.'
mla: 'Cremer, Sylvia, and Jacobus Boomsma. The Drawback of Mobility: Invasive
Species in a Globalised World. Elsevier, 2005.'
short: S. Cremer, J. Boomsma, in:, Elsevier, 2005.
conference:
name: Marie Curie Conference
date_created: 2018-12-11T12:05:47Z
date_published: 2005-09-01T00:00:00Z
date_updated: 2021-01-12T07:53:05Z
day: '01'
extern: '1'
language:
- iso: eng
main_file_link:
- url: http://www.docstoc.com/docs/15327566/1-The-drawback-of-mobility-invasive-species-in-a-globalised-world
month: '09'
oa_version: None
publication_status: published
publisher: Elsevier
publist_id: '2252'
status: public
title: 'The drawback of mobility: invasive species in a globalised world'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2005'
...