---
_id: '1033'
abstract:
- lang: eng
text: Systems of three interacting particles are notorious for their complex physical
behaviour. A landmark theoretical result in few-body quantum physics is Efimov\'s
prediction1,2 of a universal set of bound trimer states appearing for three identical
bosons with a resonant two-body interaction. Counterintuitively, these states
even exist in the absence of a corresponding two-body bound state. Since the formulation
of Efimov\'s problem in the context of nuclear physics 35 years ago, it has attracted
great interest in many areas of physics3-8. However, the observation of Efimov
quantum states has remained an elusive goal3,5. Here we report the observation
of an Efimov resonance in an ultracold gas of caesium atoms. The resonance occurs
in the range of large negative two-body scattering lengths, arising from the coupling
of three free atoms to an Efimov trimer. Experimentally, we observe its signature
as a giant three-body recombination loss9,10 when the strength of the two-body
interaction is varied. We also detect a minimum 9,11,12 in the recombination loss
for positive scattering lengths, indicating destructive interference of decay
pathways. Our results confirm central theoretical predictions of Efimov physics
and represent a starting point with which to explore the universal properties
of resonantly interacting few-body systems7. While Feshbach resonances13,14 have
provided the key to control quantum-mechanical interactions on the two-body level,
Efimov resonances connect ultracold matter15 to the world of few-body quantum
phenomena.
acknowledgement: "We thank E. Braaten, C. Greene, B. Esry, H. Hammer and T. Ko ̈hler
for many discussions and E. Kneringer for support regarding the data analysis. We
acknowledge support by the Austrian Science Fund (FWF) within Spezialforschungsbereich
15 and within the Lise Meitner programme, and by the\r\nEuropean Union in the frame
of the TMR networks ‘Cold Molecules’ and ‘FASTNet’. M.M. is supported within the
Doktorandenprogramm of the Austrian\r\nAcademy of Sciences."
article_processing_charge: No
author:
- first_name: Tobias
full_name: Kraemer, Tobias
last_name: Kraemer
- first_name: Michael
full_name: Mark, Michael
last_name: Mark
- first_name: Philipp
full_name: Waldburger, Philipp
last_name: Waldburger
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
- first_name: Cheng
full_name: Chin, Cheng
last_name: Chin
- first_name: Bastian
full_name: Engeser, Bastian
last_name: Engeser
- first_name: Adam
full_name: Lange, Adam
last_name: Lange
- first_name: Karl
full_name: Pilch, Karl
last_name: Pilch
- first_name: Antti
full_name: Jaakkola, Antti
last_name: Jaakkola
- first_name: Hanns
full_name: Nägerl, Hanns
last_name: Nägerl
- first_name: Rudolf
full_name: Grimm, Rudolf
last_name: Grimm
citation:
ama: Kraemer T, Mark M, Waldburger P, et al. Evidence for Efimov quantum states
in an ultracold gas of caesium atoms. Nature. 2006;440(7082):315-318. doi:10.1038/nature04626
apa: Kraemer, T., Mark, M., Waldburger, P., Danzl, J. G., Chin, C., Engeser, B.,
… Grimm, R. (2006). Evidence for Efimov quantum states in an ultracold gas of
caesium atoms. Nature. Nature Publishing Group. https://doi.org/10.1038/nature04626
chicago: Kraemer, Tobias, Michael Mark, Philipp Waldburger, Johann G Danzl, Cheng
Chin, Bastian Engeser, Adam Lange, et al. “Evidence for Efimov Quantum States
in an Ultracold Gas of Caesium Atoms.” Nature. Nature Publishing Group,
2006. https://doi.org/10.1038/nature04626.
ieee: T. Kraemer et al., “Evidence for Efimov quantum states in an ultracold
gas of caesium atoms,” Nature, vol. 440, no. 7082. Nature Publishing Group,
pp. 315–318, 2006.
ista: Kraemer T, Mark M, Waldburger P, Danzl JG, Chin C, Engeser B, Lange A, Pilch
K, Jaakkola A, Nägerl H, Grimm R. 2006. Evidence for Efimov quantum states in
an ultracold gas of caesium atoms. Nature. 440(7082), 315–318.
mla: Kraemer, Tobias, et al. “Evidence for Efimov Quantum States in an Ultracold
Gas of Caesium Atoms.” Nature, vol. 440, no. 7082, Nature Publishing Group,
2006, pp. 315–18, doi:10.1038/nature04626.
short: T. Kraemer, M. Mark, P. Waldburger, J.G. Danzl, C. Chin, B. Engeser, A. Lange,
K. Pilch, A. Jaakkola, H. Nägerl, R. Grimm, Nature 440 (2006) 315–318.
date_created: 2018-12-11T11:49:47Z
date_published: 2006-03-16T00:00:00Z
date_updated: 2021-01-12T06:47:48Z
day: '16'
doi: 10.1038/nature04626
extern: '1'
intvolume: ' 440'
issue: '7082'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/cond-mat/0512394
month: '03'
oa: 1
oa_version: None
page: 315 - 318
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '6356'
status: public
title: Evidence for Efimov quantum states in an ultracold gas of caesium atoms
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 440
year: '2006'
...
---
_id: '1034'
abstract:
- lang: eng
text: Three interacting particles form a system which is well known for its complex
physical behavior. A landmark theoretical result in few-body quantum physics is
Efimov\'s prediction of a universal set of weakly bound trimer states appearing
for three identical bosons with a resonant two-body interaction [1, 2]. Surprisingly,
these states even exist in the absence of a corresponding two-body bound state
and their precise nature is largely independent of the particular type of the
two-body interaction potential. Efimov\'s scenario has attracted great interest
in many areas of physics; an experimental test however has not been achieved.
We report the observation of an Efimov resonance in an ultracold thermal gas of
cesium atoms [3]. The resonance occurs in the range of large negative two-body
scattering lengths and arises from the coupling of three free atoms to an Efimov
trimer. We observe its signature as a giant three-body recombination loss when
the strength of the two-body interaction is varied near a Feshbach resonance.
This resonance develops into a continuum resonance at non-zero collision energies,
and we observe a shift of the resonance position as a function of temperature.
We also report on a minimum in the recombination loss for positive scattering
lengths, indicating destructive interference of decay pathways. Our results confirm
central theoretical predictions of Efimov physics and represent a starting point
from which to explore the universal properties of resonantly interacting few-body
systems.
acknowledgement: "We thank E. Braaten, C. Greene, B. Esry, H. Hammer, and T. Köhl\r\ner
for many stimulat-\r\ning and fruitful discussions and E. Kneringer for support
re\r\ngarding the data analysis. We\r\nacknowledge support by the Austrian Science
Fund (FWF) with\r\nin Spezialforschungs-\r\nbereich 15 and within the Lise Meitner
program, and by the Eur\r\nopean Union in the frame\r\nof the TMR networks “Cold
Molecules” and “FASTNet”. M.M. is s\r\nupported within the\r\nDoktorandenprogramm
of the Austrian Academy of Sciences."
article_processing_charge: No
author:
- first_name: Hanns
full_name: Nägerl, Hanns
last_name: Nägerl
- first_name: Tobias
full_name: Kraemer, Tobias
last_name: Kraemer
- first_name: Michael
full_name: Mark, Michael
last_name: Mark
- first_name: Philipp
full_name: Waldburger, Philipp
last_name: Waldburger
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
- first_name: Bastian
full_name: Engeser, Bastian
last_name: Engeser
- first_name: Adam
full_name: Lange, Adam
last_name: Lange
- first_name: Karl
full_name: Pilch, Karl
last_name: Pilch
- first_name: Antti
full_name: Jaakkola, Antti
last_name: Jaakkola
- first_name: Cheng
full_name: Chin, Cheng
last_name: Chin
- first_name: Rudolf
full_name: Grimm, Rudolf
last_name: Grimm
citation:
ama: 'Nägerl H, Kraemer T, Mark M, et al. Experimental evidence for Efimov quantum
states. In: Vol 869. AIP; 2006:269-277. doi:10.1063/1.2400657'
apa: 'Nägerl, H., Kraemer, T., Mark, M., Waldburger, P., Danzl, J. G., Engeser,
B., … Grimm, R. (2006). Experimental evidence for Efimov quantum states (Vol.
869, pp. 269–277). Presented at the ICAP: International Conference on Atomic Physics,
AIP. https://doi.org/10.1063/1.2400657'
chicago: Nägerl, Hanns, Tobias Kraemer, Michael Mark, Philipp Waldburger, Johann
G Danzl, Bastian Engeser, Adam Lange, et al. “Experimental Evidence for Efimov
Quantum States,” 869:269–77. AIP, 2006. https://doi.org/10.1063/1.2400657.
ieee: 'H. Nägerl et al., “Experimental evidence for Efimov quantum states,”
presented at the ICAP: International Conference on Atomic Physics, 2006, vol.
869, pp. 269–277.'
ista: 'Nägerl H, Kraemer T, Mark M, Waldburger P, Danzl JG, Engeser B, Lange A,
Pilch K, Jaakkola A, Chin C, Grimm R. 2006. Experimental evidence for Efimov quantum
states. ICAP: International Conference on Atomic Physics vol. 869, 269–277.'
mla: Nägerl, Hanns, et al. Experimental Evidence for Efimov Quantum States.
Vol. 869, AIP, 2006, pp. 269–77, doi:10.1063/1.2400657.
short: H. Nägerl, T. Kraemer, M. Mark, P. Waldburger, J.G. Danzl, B. Engeser, A.
Lange, K. Pilch, A. Jaakkola, C. Chin, R. Grimm, in:, AIP, 2006, pp. 269–277.
conference:
name: 'ICAP: International Conference on Atomic Physics'
date_created: 2018-12-11T11:49:48Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:47:49Z
day: '01'
doi: 10.1063/1.2400657
extern: '1'
intvolume: ' 869'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/cond-mat/0611629
month: '01'
oa: 1
oa_version: None
page: 269 - 277
publication_status: published
publisher: AIP
publist_id: '6355'
status: public
title: Experimental evidence for Efimov quantum states
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 869
year: '2006'
...
---
_id: '11119'
article_processing_charge: No
author:
- first_name: J. Robin
full_name: Harris, J. Robin
last_name: Harris
- first_name: Geneviève
full_name: Almouzni, Geneviève
last_name: Almouzni
- first_name: Doris
full_name: Kirschner, Doris
last_name: Kirschner
- first_name: Daniela
full_name: Dimitrova, Daniela
last_name: Dimitrova
- first_name: Jeffrey A.
full_name: Nickerson, Jeffrey A.
last_name: Nickerson
- first_name: Jean
full_name: Underwood, Jean
last_name: Underwood
- first_name: Stefan
full_name: Wagner, Stefan
last_name: Wagner
- first_name: Barbara
full_name: Korbei, Barbara
last_name: Korbei
- first_name: Roland
full_name: Foisner, Roland
last_name: Foisner
- first_name: Tobias C.
full_name: Walther, Tobias C.
last_name: Walther
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
- first_name: Reiner
full_name: Peters, Reiner
last_name: Peters
- first_name: Ivan
full_name: Walev, Ivan
last_name: Walev
- first_name: Anton I. P. M.
full_name: de Kroon, Anton I. P. M.
last_name: de Kroon
- first_name: Rutger W. H. M.
full_name: Staffhorst, Rutger W. H. M.
last_name: Staffhorst
- first_name: Ben
full_name: de Kruijff, Ben
last_name: de Kruijff
- first_name: Koert N. J.
full_name: Burger, Koert N. J.
last_name: Burger
- first_name: Luis Eduardo Soares
full_name: Netto, Luis Eduardo Soares
last_name: Netto
- first_name: Eric
full_name: Bertrand, Eric
last_name: Bertrand
- first_name: Judie B.
full_name: Alimonti, Judie B.
last_name: Alimonti
- first_name: Arnold H.
full_name: Greenberg, Arnold H.
last_name: Greenberg
- first_name: Jinnan
full_name: Xiao, Jinnan
last_name: Xiao
- first_name: Anuradha
full_name: Pradhan, Anuradha
last_name: Pradhan
- first_name: Yuechueng
full_name: Liu, Yuechueng
last_name: Liu
- first_name: Jacques
full_name: Paiement, Jacques
last_name: Paiement
- first_name: Robin
full_name: Young, Robin
last_name: Young
- first_name: Félix M.
full_name: Goñi, Félix M.
last_name: Goñi
- first_name: Ana-Victoria
full_name: Villar, Ana-Victoria
last_name: Villar
- first_name: F.-Xabier
full_name: Contreras, F.-Xabier
last_name: Contreras
- first_name: Alicia
full_name: Alonso, Alicia
last_name: Alonso
- first_name: Brian J.
full_name: Peter, Brian J.
last_name: Peter
- first_name: Ian G.
full_name: Mills, Ian G.
last_name: Mills
- first_name: Matthew K.
full_name: Higgins, Matthew K.
last_name: Higgins
- first_name: William J.
full_name: Brown, William J.
last_name: Brown
- first_name: K.
full_name: Chambers, K.
last_name: Chambers
- first_name: A.
full_name: Doody, A.
last_name: Doody
- first_name: C. Yan
full_name: Cheng, C. Yan
last_name: Cheng
- first_name: Dolores D.
full_name: Mruk, Dolores D.
last_name: Mruk
- first_name: Chunhong
full_name: Yang, Chunhong
last_name: Yang
- first_name: Helmut
full_name: Kirchhoff, Helmut
last_name: Kirchhoff
- first_name: Winfried
full_name: Haase, Winfried
last_name: Haase
- first_name: Stephanie
full_name: Boggasch, Stephanie
last_name: Boggasch
- first_name: Harald
full_name: Paulsen, Harald
last_name: Paulsen
- first_name: Julie
full_name: Benesova, Julie
last_name: Benesova
- first_name: Sven-T.
full_name: Liffers, Sven-T.
last_name: Liffers
- first_name: Matthias
full_name: Rögner, Matthias
last_name: Rögner
- first_name: Ya-sheng
full_name: Gao, Ya-sheng
last_name: Gao
- first_name: Elizabeth
full_name: Sztul, Elizabeth
last_name: Sztul
- first_name: Meinolf
full_name: Thiemann, Meinolf
last_name: Thiemann
- first_name: H. Dariush
full_name: Fahimi, H. Dariush
last_name: Fahimi
- first_name: Robert
full_name: Gniadecki, Robert
last_name: Gniadecki
- first_name: Barbara
full_name: Gajkowska, Barbara
last_name: Gajkowska
- first_name: Susan L.
full_name: Bane, Susan L.
last_name: Bane
- first_name: John F.
full_name: Hess, John F.
last_name: Hess
- first_name: John C.
full_name: Voss, John C.
last_name: Voss
- first_name: Paul G.
full_name: Fitzgerald, Paul G.
last_name: Fitzgerald
- first_name: Shin-ichi
full_name: Hisanaga, Shin-ichi
last_name: Hisanaga
- first_name: Takahiro
full_name: Sasaki, Takahiro
last_name: Sasaki
- first_name: Kenji
full_name: Uéda, Kenji
last_name: Uéda
- first_name: Terrence
full_name: Town, Terrence
last_name: Town
- first_name: Jun
full_name: Tan, Jun
last_name: Tan
- first_name: Nathaniel G. N.
full_name: Milton, Nathaniel G. N.
last_name: Milton
- first_name: Richard
full_name: Chi, Richard
last_name: Chi
- first_name: Thomas C. S.
full_name: Keller, Thomas C. S.
last_name: Keller
- first_name: Marina
full_name: Kriajevska, Marina
last_name: Kriajevska
- first_name: Igor
full_name: Bronstein, Igor
last_name: Bronstein
- first_name: Eugene
full_name: Lukanidin, Eugene
last_name: Lukanidin
- first_name: David F.
full_name: Holmes, David F.
last_name: Holmes
- first_name: Karl E.
full_name: Kadler, Karl E.
last_name: Kadler
citation:
ama: 'Harris JR, Almouzni G, Kirschner D, et al. In Vitro Techniques. In: Harris
R, Graham J, Rickwood D, eds. Cell Biology Protocols. Chichester, UK: Wiley;
2006:201-378. doi:10.1002/0470033487.ch6'
apa: 'Harris, J. R., Almouzni, G., Kirschner, D., Dimitrova, D., Nickerson, J. A.,
Underwood, J., … Kadler, K. E. (2006). In Vitro Techniques. In R. Harris, J. Graham,
& D. Rickwood (Eds.), Cell Biology Protocols (pp. 201–378). Chichester,
UK: Wiley. https://doi.org/10.1002/0470033487.ch6'
chicago: 'Harris, J. Robin, Geneviève Almouzni, Doris Kirschner, Daniela Dimitrova,
Jeffrey A. Nickerson, Jean Underwood, Stefan Wagner, et al. “In Vitro Techniques.”
In Cell Biology Protocols, edited by Robin Harris, John Graham, and David
Rickwood, 201–378. Chichester, UK: Wiley, 2006. https://doi.org/10.1002/0470033487.ch6.'
ieee: 'J. R. Harris et al., “In Vitro Techniques,” in Cell Biology Protocols,
R. Harris, J. Graham, and D. Rickwood, Eds. Chichester, UK: Wiley, 2006, pp. 201–378.'
ista: 'Harris JR, Almouzni G, Kirschner D, Dimitrova D, Nickerson JA, Underwood
J, Wagner S, Korbei B, Foisner R, Walther TC, Hetzer M, Peters R, Walev I, de
Kroon AIPM, Staffhorst RWHM, de Kruijff B, Burger KNJ, Netto LES, Bertrand E,
Alimonti JB, Greenberg AH, Xiao J, Pradhan A, Liu Y, Paiement J, Young R, Goñi
FM, Villar A-V, Contreras F-X, Alonso A, Peter BJ, Mills IG, Higgins MK, Brown
WJ, Chambers K, Doody A, Cheng CY, Mruk DD, Yang C, Kirchhoff H, Haase W, Boggasch
S, Paulsen H, Benesova J, Liffers S-T, Rögner M, Gao Y, Sztul E, Thiemann M, Fahimi
HD, Gniadecki R, Gajkowska B, Bane SL, Hess JF, Voss JC, Fitzgerald PG, Hisanaga
S, Sasaki T, Uéda K, Town T, Tan J, Milton NGN, Chi R, Keller TCS, Kriajevska
M, Bronstein I, Lukanidin E, Holmes DF, Kadler KE. 2006.In Vitro Techniques. In:
Cell Biology Protocols. , 201–378.'
mla: Harris, J. Robin, et al. “In Vitro Techniques.” Cell Biology Protocols,
edited by Robin Harris et al., Wiley, 2006, pp. 201–378, doi:10.1002/0470033487.ch6.
short: J.R. Harris, G. Almouzni, D. Kirschner, D. Dimitrova, J.A. Nickerson, J.
Underwood, S. Wagner, B. Korbei, R. Foisner, T.C. Walther, M. Hetzer, R. Peters,
I. Walev, A.I.P.M. de Kroon, R.W.H.M. Staffhorst, B. de Kruijff, K.N.J. Burger,
L.E.S. Netto, E. Bertrand, J.B. Alimonti, A.H. Greenberg, J. Xiao, A. Pradhan,
Y. Liu, J. Paiement, R. Young, F.M. Goñi, A.-V. Villar, F.-X. Contreras, A. Alonso,
B.J. Peter, I.G. Mills, M.K. Higgins, W.J. Brown, K. Chambers, A. Doody, C.Y.
Cheng, D.D. Mruk, C. Yang, H. Kirchhoff, W. Haase, S. Boggasch, H. Paulsen, J.
Benesova, S.-T. Liffers, M. Rögner, Y. Gao, E. Sztul, M. Thiemann, H.D. Fahimi,
R. Gniadecki, B. Gajkowska, S.L. Bane, J.F. Hess, J.C. Voss, P.G. Fitzgerald,
S. Hisanaga, T. Sasaki, K. Uéda, T. Town, J. Tan, N.G.N. Milton, R. Chi, T.C.S.
Keller, M. Kriajevska, I. Bronstein, E. Lukanidin, D.F. Holmes, K.E. Kadler, in:,
R. Harris, J. Graham, D. Rickwood (Eds.), Cell Biology Protocols, Wiley, Chichester,
UK, 2006, pp. 201–378.
date_created: 2022-04-07T07:56:42Z
date_published: 2006-01-27T00:00:00Z
date_updated: 2022-07-18T08:57:08Z
day: '27'
doi: 10.1002/0470033487.ch6
editor:
- first_name: Robin
full_name: Harris, Robin
last_name: Harris
- first_name: John
full_name: Graham, John
last_name: Graham
- first_name: David
full_name: Rickwood, David
last_name: Rickwood
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 201-378
place: Chichester, UK
publication: Cell Biology Protocols
publication_identifier:
eisbn:
- '9780470033487 '
isbn:
- '9780470847589 '
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: In Vitro Techniques
type: book_chapter
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
year: '2006'
...
---
_id: '11117'
abstract:
- lang: eng
text: Over the last years it has become evident that the nuclear envelope (NE) is
more than a passive membrane barrier that separates the nucleus from the cytoplasm.
The NE not only controls the trafficking of macromolecules between the nucleoplasm
and the cytosol, but also provides anchoring sites for chromosomes and cytoskeleton
to the nuclear periphery. Targeting of chromatin to the NE might actually be part
of gene expression regulation in eukaryotes. Mutations in certain NE proteins
are associated with a diversity of human diseases, including muscular dystrophy,
neuropathy, lipodistrophy, torsion dystonia and the premature aging condition
progeria. Despite the importance of the NE for cell division and differentiation,
relatively little is known about its biogenesis and its role in human diseases.
It is our goal to provide a comprehensive view of the NE and to discuss possible
implications of NE-associated changes for gene expression, chromatin organization
and signal transduction.
article_processing_charge: No
article_type: review
author:
- first_name: M. A.
full_name: D’Angelo, M. A.
last_name: D’Angelo
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: D’Angelo MA, Hetzer M. The role of the nuclear envelope in cellular organization.
Cellular and Molecular Life Sciences. 2006;63(3):316-332. doi:10.1007/s00018-005-5361-3
apa: D’Angelo, M. A., & Hetzer, M. (2006). The role of the nuclear envelope
in cellular organization. Cellular and Molecular Life Sciences. Springer
Nature. https://doi.org/10.1007/s00018-005-5361-3
chicago: D’Angelo, M. A., and Martin Hetzer. “The Role of the Nuclear Envelope in
Cellular Organization.” Cellular and Molecular Life Sciences. Springer
Nature, 2006. https://doi.org/10.1007/s00018-005-5361-3.
ieee: M. A. D’Angelo and M. Hetzer, “The role of the nuclear envelope in cellular
organization,” Cellular and Molecular Life Sciences, vol. 63, no. 3. Springer
Nature, pp. 316–332, 2006.
ista: D’Angelo MA, Hetzer M. 2006. The role of the nuclear envelope in cellular
organization. Cellular and Molecular Life Sciences. 63(3), 316–332.
mla: D’Angelo, M. A., and Martin Hetzer. “The Role of the Nuclear Envelope in Cellular
Organization.” Cellular and Molecular Life Sciences, vol. 63, no. 3, Springer
Nature, 2006, pp. 316–32, doi:10.1007/s00018-005-5361-3.
short: M.A. D’Angelo, M. Hetzer, Cellular and Molecular Life Sciences 63 (2006)
316–332.
date_created: 2022-04-07T07:56:22Z
date_published: 2006-01-02T00:00:00Z
date_updated: 2022-07-18T08:56:58Z
day: '02'
doi: 10.1007/s00018-005-5361-3
extern: '1'
external_id:
pmid:
- '16389459'
intvolume: ' 63'
issue: '3'
keyword:
- Cell Biology
- Cellular and Molecular Neuroscience
- Pharmacology
- Molecular Biology
- Molecular Medicine
language:
- iso: eng
month: '01'
oa_version: None
page: 316-332
pmid: 1
publication: Cellular and Molecular Life Sciences
publication_identifier:
eissn:
- 1420-9071
issn:
- 1420-682X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of the nuclear envelope in cellular organization
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 63
year: '2006'
...
---
_id: '11118'
abstract:
- lang: eng
text: Nuclear pore complexes are multiprotein channels that span the double lipid
bilayer of the nuclear envelope. How new pores are inserted into the intact nuclear
envelope of proliferating and differentiating eukaryotic cells is unknown. We
found that the Nup107-160 complex was incorporated into assembly sites in the
nuclear envelope from both the nucleoplasmic and the cytoplasmic sides. Nuclear
pore insertion required the generation of Ran guanosine triphosphate in the nuclear
and cytoplasmic compartments. Newly formed nuclear pore complexes did not contain
structural components of preexisting pores, suggesting that they can form de novo.
article_processing_charge: No
article_type: original
author:
- first_name: Maximiliano A.
full_name: D'Angelo, Maximiliano A.
last_name: D'Angelo
- first_name: Daniel J.
full_name: Anderson, Daniel J.
last_name: Anderson
- first_name: Erin
full_name: Richard, Erin
last_name: Richard
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: D’Angelo MA, Anderson DJ, Richard E, Hetzer M. Nuclear pores form de novo from
both sides of the nuclear envelope. Science. 2006;312(5772):440-443. doi:10.1126/science.1124196
apa: D’Angelo, M. A., Anderson, D. J., Richard, E., & Hetzer, M. (2006). Nuclear
pores form de novo from both sides of the nuclear envelope. Science. American
Association for the Advancement of Science. https://doi.org/10.1126/science.1124196
chicago: D’Angelo, Maximiliano A., Daniel J. Anderson, Erin Richard, and Martin
Hetzer. “Nuclear Pores Form de Novo from Both Sides of the Nuclear Envelope.”
Science. American Association for the Advancement of Science, 2006. https://doi.org/10.1126/science.1124196.
ieee: M. A. D’Angelo, D. J. Anderson, E. Richard, and M. Hetzer, “Nuclear pores
form de novo from both sides of the nuclear envelope,” Science, vol. 312,
no. 5772. American Association for the Advancement of Science, pp. 440–443, 2006.
ista: D’Angelo MA, Anderson DJ, Richard E, Hetzer M. 2006. Nuclear pores form de
novo from both sides of the nuclear envelope. Science. 312(5772), 440–443.
mla: D’Angelo, Maximiliano A., et al. “Nuclear Pores Form de Novo from Both Sides
of the Nuclear Envelope.” Science, vol. 312, no. 5772, American Association
for the Advancement of Science, 2006, pp. 440–43, doi:10.1126/science.1124196.
short: M.A. D’Angelo, D.J. Anderson, E. Richard, M. Hetzer, Science 312 (2006) 440–443.
date_created: 2022-04-07T07:56:32Z
date_published: 2006-04-21T00:00:00Z
date_updated: 2022-07-18T08:57:04Z
day: '21'
doi: 10.1126/science.1124196
extern: '1'
external_id:
pmid:
- '16627745'
intvolume: ' 312'
issue: '5772'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '04'
oa_version: None
page: 440-443
pmid: 1
publication: Science
publication_identifier:
issn:
- 0036-8075
- 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nuclear pores form de novo from both sides of the nuclear envelope
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 312
year: '2006'
...
---
_id: '11929'
abstract:
- lang: eng
text: Broder et al.'s [3] shingling algorithm and Charikar's [4] random projection
based approach are considered "state-of-the-art" algorithms for finding near-duplicate
web pages. Both algorithms were either developed at or used by popular web search
engines. We compare the two algorithms on a very large scale, namely on a set
of 1.6B distinct web pages. The results show that neither of the algorithms works
well for finding near-duplicate pairs on the same site, while both achieve high
precision for near-duplicate pairs on different sites. Since Charikar's algorithm
finds more near-duplicate pairs on different sites, it achieves a better precision
overall, namely 0.50 versus 0.38 for Broder et al.'s algorithm. We present a combined
algorithm which achieves precision 0.79 with 79% of the recall of the other algorithms.
article_processing_charge: No
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
citation:
ama: 'Henzinger MH. Finding near-duplicate web pages: A large-scale evaluation of
algorithms. In: 29th Annual International ACM SIGIR Conference on Research
and Development in Information Retrieval. Association for Computing Machinery;
2006:284-291. doi:10.1145/1148170.1148222'
apa: 'Henzinger, M. H. (2006). Finding near-duplicate web pages: A large-scale evaluation
of algorithms. In 29th Annual International ACM SIGIR Conference on Research
and Development in Information Retrieval (pp. 284–291). Seattle, WA, United
States: Association for Computing Machinery. https://doi.org/10.1145/1148170.1148222'
chicago: 'Henzinger, Monika H. “Finding Near-Duplicate Web Pages: A Large-Scale
Evaluation of Algorithms.” In 29th Annual International ACM SIGIR Conference
on Research and Development in Information Retrieval, 284–91. Association
for Computing Machinery, 2006. https://doi.org/10.1145/1148170.1148222.'
ieee: 'M. H. Henzinger, “Finding near-duplicate web pages: A large-scale evaluation
of algorithms,” in 29th Annual International ACM SIGIR Conference on Research
and Development in Information Retrieval, Seattle, WA, United States, 2006,
pp. 284–291.'
ista: 'Henzinger MH. 2006. Finding near-duplicate web pages: A large-scale evaluation
of algorithms. 29th Annual International ACM SIGIR Conference on Research and
Development in Information Retrieval. SIGIR: International Conference on Research
and Development in Information Retrieval, 284–291.'
mla: 'Henzinger, Monika H. “Finding Near-Duplicate Web Pages: A Large-Scale Evaluation
of Algorithms.” 29th Annual International ACM SIGIR Conference on Research
and Development in Information Retrieval, Association for Computing Machinery,
2006, pp. 284–91, doi:10.1145/1148170.1148222.'
short: M.H. Henzinger, in:, 29th Annual International ACM SIGIR Conference on Research
and Development in Information Retrieval, Association for Computing Machinery,
2006, pp. 284–291.
conference:
end_date: 2006-08-11
location: Seattle, WA, United States
name: 'SIGIR: International Conference on Research and Development in Information
Retrieval'
start_date: 2006-08-06
date_created: 2022-08-19T07:20:31Z
date_published: 2006-08-01T00:00:00Z
date_updated: 2023-02-17T13:49:03Z
day: '01'
doi: 10.1145/1148170.1148222
extern: '1'
language:
- iso: eng
month: '08'
oa_version: None
page: 284-291
publication: 29th Annual International ACM SIGIR Conference on Research and Development
in Information Retrieval
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Finding near-duplicate web pages: A large-scale evaluation of algorithms'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2006'
...
---
_id: '1462'
abstract:
- lang: eng
text: A Fourier transform technique is introduced for counting the number of solutions
of holomorphic moment map equations over a finite field. This technique in turn
gives information on Betti numbers of holomorphic symplectic quotients. As a consequence,
simple unified proofs are obtained for formulas of Poincaré polynomials of toric
hyperkähler varieties (recovering results of Bielawski-Dancer and Hausel-Sturmfels),
Poincaré polynomials of Hubert schemes of points and twisted Atiyah-Drinfeld-Hitchin-Manin
(ADHM) spaces of instantons on ℂ2 (recovering results of Nakajima-Yoshioka), and
Poincaré polynomials of all Nakajima quiver varieties. As an application, a proof
of a conjecture of Kac on the number of absolutely indecomposable representations
of a quiver is announced.
acknowledgement: This work was supported by a Royal Society University Research Fellowship,
National Science Foundation Grant DMS-0305505, an Alfred P. Sloan Research Fellowship,
and a Summer Research Assignment of the University of Texas at Austin.
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
citation:
ama: Hausel T. Betti numbers of holomorphic symplectic quotients via arithmetic
Fourier transform. PNAS. 2006;103(16):6120-6124. doi:10.1073/pnas.0601337103
apa: Hausel, T. (2006). Betti numbers of holomorphic symplectic quotients via arithmetic
Fourier transform. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.0601337103
chicago: Hausel, Tamás. “Betti Numbers of Holomorphic Symplectic Quotients via Arithmetic
Fourier Transform.” PNAS. National Academy of Sciences, 2006. https://doi.org/10.1073/pnas.0601337103.
ieee: T. Hausel, “Betti numbers of holomorphic symplectic quotients via arithmetic
Fourier transform,” PNAS, vol. 103, no. 16. National Academy of Sciences,
pp. 6120–6124, 2006.
ista: Hausel T. 2006. Betti numbers of holomorphic symplectic quotients via arithmetic
Fourier transform. PNAS. 103(16), 6120–6124.
mla: Hausel, Tamás. “Betti Numbers of Holomorphic Symplectic Quotients via Arithmetic
Fourier Transform.” PNAS, vol. 103, no. 16, National Academy of Sciences,
2006, pp. 6120–24, doi:10.1073/pnas.0601337103.
short: T. Hausel, PNAS 103 (2006) 6120–6124.
date_created: 2018-12-11T11:52:10Z
date_published: 2006-04-18T00:00:00Z
date_updated: 2021-01-12T06:50:55Z
day: '18'
doi: 10.1073/pnas.0601337103
extern: 1
intvolume: ' 103'
issue: '16'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math/0511163
month: '04'
oa: 1
page: 6120 - 6124
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5734'
quality_controlled: 0
status: public
title: Betti numbers of holomorphic symplectic quotients via arithmetic Fourier transform
type: journal_article
volume: 103
year: '2006'
...
---
_id: '1461'
abstract:
- lang: eng
text: This note proves combinatorially that the intersection pairing on the middle-dimensional
compactly supported cohomology of a toric hyperkähler variety is always definite,
providing a large number of non-trivial L 2 harmonic forms for toric hyperkähler
metrics on these varieties. This is motivated by a result of Hitchin about the
definiteness of the pairing of L 2 harmonic forms on complete hyperkähler manifolds
of linear growth.
acknowledgement: The first author was partly supported by NSF grant DMS-0072675. The
second author was partly supported by a VIGRE postdoc under NSF grant number 9983660
to Cornell University.
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
- first_name: Edward
full_name: Swartz, Edward
last_name: Swartz
citation:
ama: Hausel T, Swartz E. Intersection forms of toric hyperkähler varieties. Proceedings
of the American Mathematical Society. 2006;134(8):2403-2409. doi:10.1090/S0002-9939-06-08248-7
apa: Hausel, T., & Swartz, E. (2006). Intersection forms of toric hyperkähler
varieties. Proceedings of the American Mathematical Society. American Mathematical
Society. https://doi.org/10.1090/S0002-9939-06-08248-7
chicago: Hausel, Tamás, and Edward Swartz. “Intersection Forms of Toric Hyperkähler
Varieties.” Proceedings of the American Mathematical Society. American
Mathematical Society, 2006. https://doi.org/10.1090/S0002-9939-06-08248-7.
ieee: T. Hausel and E. Swartz, “Intersection forms of toric hyperkähler varieties,”
Proceedings of the American Mathematical Society, vol. 134, no. 8. American
Mathematical Society, pp. 2403–2409, 2006.
ista: Hausel T, Swartz E. 2006. Intersection forms of toric hyperkähler varieties.
Proceedings of the American Mathematical Society. 134(8), 2403–2409.
mla: Hausel, Tamás, and Edward Swartz. “Intersection Forms of Toric Hyperkähler
Varieties.” Proceedings of the American Mathematical Society, vol. 134,
no. 8, American Mathematical Society, 2006, pp. 2403–09, doi:10.1090/S0002-9939-06-08248-7.
short: T. Hausel, E. Swartz, Proceedings of the American Mathematical Society 134
(2006) 2403–2409.
date_created: 2018-12-11T11:52:09Z
date_published: 2006-08-01T00:00:00Z
date_updated: 2021-01-12T06:50:54Z
day: '01'
doi: 10.1090/S0002-9939-06-08248-7
extern: 1
intvolume: ' 134'
issue: '8'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math/0306369
month: '08'
oa: 1
page: 2403 - 2409
publication: Proceedings of the American Mathematical Society
publication_status: published
publisher: American Mathematical Society
publist_id: '5733'
quality_controlled: 0
status: public
title: Intersection forms of toric hyperkähler varieties
type: journal_article
volume: 134
year: '2006'
...
---
_id: '1715'
abstract:
- lang: eng
text: 'Background: Cell-to-cell communication at the synapse involves synaptic transmission
as well as signaling mediated by growth factors, which provide developmental and
plasticity cues. There is evidence that a retrograde, presynaptic transforming
growth factor-β (TGF-β) signaling event regulates synapse development and function
in Drosophila. Results: Here we show that a postsynaptic TGF-β signaling event
occurs during larval development. The type I receptor Thick veins (Tkv) and the
R-Smad transcription factor Mothers-against-dpp (Mad) are localized postsynaptically
in the muscle. Furthermore, Mad phosphorylation occurs in regions facing the presynaptic
active zones of neurotransmitter release within the postsynaptic subsynaptic reticulum
(SSR). In order to monitor in real time the levels of TGF-β signaling in the synapse
during synaptic transmission, we have established a FRAP assay to measure Mad
nuclear import/export in the muscle. We show that Mad nuclear trafficking depends
on stimulation of the muscle. Conclusions: Our data suggest a mechanism linking
synaptic transmission and postsynaptic TGF-β signaling that may coordinate nerve-muscle
development and function.'
acknowledgement: This work was supported by the Max Planck Society, HFSP, and Deutsche
Forschungsgemeinschaft.
article_processing_charge: No
author:
- first_name: Veronika
full_name: Dudu, Veronika
last_name: Dudu
- first_name: Thomas
full_name: Bittig, Thomas
last_name: Bittig
- first_name: Eugeni
full_name: Entchev, Eugeni
last_name: Entchev
- first_name: Anna
full_name: Kicheva, Anna
id: 3959A2A0-F248-11E8-B48F-1D18A9856A87
last_name: Kicheva
orcid: 0000-0003-4509-4998
- first_name: Frank
full_name: Julicher, Frank
last_name: Julicher
- first_name: Marcos
full_name: González Gaitán, Marcos
last_name: González Gaitán
citation:
ama: Dudu V, Bittig T, Entchev E, Kicheva A, Julicher F, González Gaitán M. Postsynaptic
mad signaling at the Drosophila neuromuscular junction. Current Biology.
2006;16(7):625-635. doi:10.1016/j.cub.2006.02.061
apa: Dudu, V., Bittig, T., Entchev, E., Kicheva, A., Julicher, F., & González
Gaitán, M. (2006). Postsynaptic mad signaling at the Drosophila neuromuscular
junction. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2006.02.061
chicago: Dudu, Veronika, Thomas Bittig, Eugeni Entchev, Anna Kicheva, Frank Julicher,
and Marcos González Gaitán. “Postsynaptic Mad Signaling at the Drosophila Neuromuscular
Junction.” Current Biology. Cell Press, 2006. https://doi.org/10.1016/j.cub.2006.02.061.
ieee: V. Dudu, T. Bittig, E. Entchev, A. Kicheva, F. Julicher, and M. González Gaitán,
“Postsynaptic mad signaling at the Drosophila neuromuscular junction,” Current
Biology, vol. 16, no. 7. Cell Press, pp. 625–635, 2006.
ista: Dudu V, Bittig T, Entchev E, Kicheva A, Julicher F, González Gaitán M. 2006.
Postsynaptic mad signaling at the Drosophila neuromuscular junction. Current Biology.
16(7), 625–635.
mla: Dudu, Veronika, et al. “Postsynaptic Mad Signaling at the Drosophila Neuromuscular
Junction.” Current Biology, vol. 16, no. 7, Cell Press, 2006, pp. 625–35,
doi:10.1016/j.cub.2006.02.061.
short: V. Dudu, T. Bittig, E. Entchev, A. Kicheva, F. Julicher, M. González Gaitán,
Current Biology 16 (2006) 625–635.
date_created: 2018-12-11T11:53:37Z
date_published: 2006-04-04T00:00:00Z
date_updated: 2021-11-16T07:44:15Z
day: '04'
doi: 10.1016/j.cub.2006.02.061
extern: '1'
intvolume: ' 16'
issue: '7'
language:
- iso: eng
month: '04'
oa_version: None
page: 625 - 635
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '5416'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1016/j.cub.2006.06.020
status: public
title: Postsynaptic mad signaling at the Drosophila neuromuscular junction
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 16
year: '2006'
...
---
_id: '1745'
abstract:
- lang: eng
text: SiGe islands grown by deposition of 10 monolayers of Ge on Si(0 0 1) at 740
°C were investigated by using a combination of selective wet chemical etching
and atomic force microscopy. The used etchant, a solution consisting of ammonium
hydroxide and hydrogen peroxide, shows a high selectivity of Ge over SixGe1-x
and is characterized by relatively slow etching rates for Si-rich alloys. By performing
successive etching experiments on the same sample area, we are able to gain a
deeper insight into the lateral displacement the islands undergo during post growth
annealing.
author:
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Armando
full_name: Rastelli, Armando
last_name: Rastelli
- first_name: Mathieu
full_name: Stoffel, Mathieu
last_name: Stoffel
- first_name: Giovanni
full_name: Isella, Giovanni
last_name: Isella
- first_name: Hans
full_name: Von Känel, Hans
last_name: Von Känel
- first_name: Alexander
full_name: Bittner, Alexander M
last_name: Bittner
- first_name: Jerry
full_name: Tersoff, Jerry
last_name: Tersoff
- first_name: Ulrich
full_name: Denker, Ulrich
last_name: Denker
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
- first_name: Giovanni
full_name: Costantini, Giovanni
last_name: Costantini
- first_name: Klaus
full_name: Kern, Klaus
last_name: Kern
citation:
ama: Katsaros G, Rastelli A, Stoffel M, et al. Investigating the lateral motion
of SiGe islands by selective chemical etching. Surface Science. 2006;600(12):2608-2613.
doi:10.1016/j.susc.2006.04.027
apa: Katsaros, G., Rastelli, A., Stoffel, M., Isella, G., Von Känel, H., Bittner,
A., … Kern, K. (2006). Investigating the lateral motion of SiGe islands by selective
chemical etching. Surface Science. Elsevier. https://doi.org/10.1016/j.susc.2006.04.027
chicago: Katsaros, Georgios, Armando Rastelli, Mathieu Stoffel, Giovanni Isella,
Hans Von Känel, Alexander Bittner, Jerry Tersoff, et al. “Investigating the Lateral
Motion of SiGe Islands by Selective Chemical Etching.” Surface Science.
Elsevier, 2006. https://doi.org/10.1016/j.susc.2006.04.027.
ieee: G. Katsaros et al., “Investigating the lateral motion of SiGe islands
by selective chemical etching,” Surface Science, vol. 600, no. 12. Elsevier,
pp. 2608–2613, 2006.
ista: Katsaros G, Rastelli A, Stoffel M, Isella G, Von Känel H, Bittner A, Tersoff
J, Denker U, Schmidt O, Costantini G, Kern K. 2006. Investigating the lateral
motion of SiGe islands by selective chemical etching. Surface Science. 600(12),
2608–2613.
mla: Katsaros, Georgios, et al. “Investigating the Lateral Motion of SiGe Islands
by Selective Chemical Etching.” Surface Science, vol. 600, no. 12, Elsevier,
2006, pp. 2608–13, doi:10.1016/j.susc.2006.04.027.
short: G. Katsaros, A. Rastelli, M. Stoffel, G. Isella, H. Von Känel, A. Bittner,
J. Tersoff, U. Denker, O. Schmidt, G. Costantini, K. Kern, Surface Science 600
(2006) 2608–2613.
date_created: 2018-12-11T11:53:47Z
date_published: 2006-06-15T00:00:00Z
date_updated: 2021-01-12T06:52:56Z
day: '15'
doi: 10.1016/j.susc.2006.04.027
extern: 1
intvolume: ' 600'
issue: '12'
month: '06'
page: 2608 - 2613
publication: Surface Science
publication_status: published
publisher: Elsevier
publist_id: '5379'
quality_controlled: 0
status: public
title: Investigating the lateral motion of SiGe islands by selective chemical etching
type: journal_article
volume: 600
year: '2006'
...
---
_id: '1747'
abstract:
- lang: eng
text: 'We report on recent advances in the understanding of surface processes occurring
during growth and post-growth annealing of strained islands which may find application
as self-assembled quantum dots. We investigate the model system SiGe/Si(0 0 1)
by a new approach based on "reading the footprints" which islands leave
on the substrate during their growth and evolution. Such footprints consist of
trenches carved in the Si substrate. We distinguish between surface footprints
and footprints buried below the islands. The former allow us to discriminate islands
which are in the process of growing from those which are shrinking. Islands with
steep morphologies grow at the expense of smaller and shallower islands, consistent
with the kinetics of anomalous coarsening. While shrinking, islands change their
shape according to thermodynamic predictions. Buried footprints are investigated
by removing the SiGe epilayer by means of selective wet chemical etching. Their
reading shows that: (i) during post-growth annealing islands move laterally because
of surface-mediated Si-Ge intermixing; (ii) a tree-ring structure of trenches
is created by dislocated islands during their "cyclic" growth. This
allows us to distinguish coherent from dislocated islands and to establish whether
the latter are the result of island coalescence.'
acknowledgement: This work was supported by the BMBF (03N8711)
author:
- first_name: Armando
full_name: Rastelli, Armando
last_name: Rastelli
- first_name: Mathieu
full_name: Stoffel, Mathieu
last_name: Stoffel
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Jerry
full_name: Tersoff, Jerry
last_name: Tersoff
- first_name: Ulrich
full_name: Denker, Ulrich
last_name: Denker
- first_name: Tsvetelina
full_name: Merdzhanova, Tsvetelina
last_name: Merdzhanova
- first_name: Gouranga
full_name: Kar, Gouranga S
last_name: Kar
- first_name: Giovanni
full_name: Costantini, Giovanni
last_name: Costantini
- first_name: Klaus
full_name: Kern, Klaus
last_name: Kern
- first_name: Hans
full_name: Von Känel, Hans
last_name: Von Känel
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
citation:
ama: Rastelli A, Stoffel M, Katsaros G, et al. Reading the footprints of strained
islands. Microelectronics Journal. 2006;37(12):1471-1476. doi:10.1016/j.mejo.2006.05.029
apa: Rastelli, A., Stoffel, M., Katsaros, G., Tersoff, J., Denker, U., Merdzhanova,
T., … Schmidt, O. (2006). Reading the footprints of strained islands. Microelectronics
Journal. Elsevier. https://doi.org/10.1016/j.mejo.2006.05.029
chicago: Rastelli, Armando, Mathieu Stoffel, Georgios Katsaros, Jerry Tersoff, Ulrich
Denker, Tsvetelina Merdzhanova, Gouranga Kar, et al. “Reading the Footprints of
Strained Islands.” Microelectronics Journal. Elsevier, 2006. https://doi.org/10.1016/j.mejo.2006.05.029.
ieee: A. Rastelli et al., “Reading the footprints of strained islands,” Microelectronics
Journal, vol. 37, no. 12. Elsevier, pp. 1471–1476, 2006.
ista: Rastelli A, Stoffel M, Katsaros G, Tersoff J, Denker U, Merdzhanova T, Kar
G, Costantini G, Kern K, Von Känel H, Schmidt O. 2006. Reading the footprints
of strained islands. Microelectronics Journal. 37(12), 1471–1476.
mla: Rastelli, Armando, et al. “Reading the Footprints of Strained Islands.” Microelectronics
Journal, vol. 37, no. 12, Elsevier, 2006, pp. 1471–76, doi:10.1016/j.mejo.2006.05.029.
short: A. Rastelli, M. Stoffel, G. Katsaros, J. Tersoff, U. Denker, T. Merdzhanova,
G. Kar, G. Costantini, K. Kern, H. Von Känel, O. Schmidt, Microelectronics Journal
37 (2006) 1471–1476.
date_created: 2018-12-11T11:53:47Z
date_published: 2006-12-01T00:00:00Z
date_updated: 2021-01-12T06:52:57Z
day: '01'
doi: 10.1016/j.mejo.2006.05.029
extern: 1
intvolume: ' 37'
issue: '12'
month: '12'
page: 1471 - 1476
publication: Microelectronics Journal
publication_status: published
publisher: Elsevier
publist_id: '5377'
quality_controlled: 0
status: public
title: Reading the footprints of strained islands
type: journal_article
volume: 37
year: '2006'
...
---
_id: '1746'
abstract:
- lang: eng
text: 'A microscopic picture for the GaAs overgrowth of self-organized InAs/GaAs(001)
quantum dots is developed. Scanning tunneling microscopy measurements reveal two
capping regimes: the first being characterized by a dot shrinking and a backward
pyramid-to-dome shape transition. This regime is governed by fast dynamics resulting
in island morphologies close to thermodynamic equilibrium. The second regime is
marked by a true overgrowth and is controlled by kinetically limited surface diffusion
processes. A simple model is developed to describe the observed structural changes
which are rationalized in terms of energetic minimization driven by lattice mismatch
and alloying.'
author:
- first_name: Giovanni
full_name: Costantini, Giovanni
last_name: Costantini
- first_name: Armando
full_name: Rastelli, Armando
last_name: Rastelli
- first_name: Carlos
full_name: Manzano, Carlos
last_name: Manzano
- first_name: P
full_name: Acosta-Diaz, P
last_name: Acosta Diaz
- first_name: Rudeeson
full_name: Songmuang, Rudeeson
last_name: Songmuang
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
- first_name: Klaus
full_name: Kern, Klaus
last_name: Kern
citation:
ama: Costantini G, Rastelli A, Manzano C, et al. Interplay between thermodynamics
and kinetics in the capping of InAs/GaAs (001) quantum dots. Physical Review
Letters. 2006;96(22). doi:10.1103/PhysRevLett.96.226106
apa: Costantini, G., Rastelli, A., Manzano, C., Acosta Diaz, P., Songmuang, R.,
Katsaros, G., … Kern, K. (2006). Interplay between thermodynamics and kinetics
in the capping of InAs/GaAs (001) quantum dots. Physical Review Letters.
American Physical Society. https://doi.org/10.1103/PhysRevLett.96.226106
chicago: Costantini, Giovanni, Armando Rastelli, Carlos Manzano, P Acosta Diaz,
Rudeeson Songmuang, Georgios Katsaros, Oliver Schmidt, and Klaus Kern. “Interplay
between Thermodynamics and Kinetics in the Capping of InAs/GaAs (001) Quantum
Dots.” Physical Review Letters. American Physical Society, 2006. https://doi.org/10.1103/PhysRevLett.96.226106.
ieee: G. Costantini et al., “Interplay between thermodynamics and kinetics
in the capping of InAs/GaAs (001) quantum dots,” Physical Review Letters,
vol. 96, no. 22. American Physical Society, 2006.
ista: Costantini G, Rastelli A, Manzano C, Acosta Diaz P, Songmuang R, Katsaros
G, Schmidt O, Kern K. 2006. Interplay between thermodynamics and kinetics in the
capping of InAs/GaAs (001) quantum dots. Physical Review Letters. 96(22).
mla: Costantini, Giovanni, et al. “Interplay between Thermodynamics and Kinetics
in the Capping of InAs/GaAs (001) Quantum Dots.” Physical Review Letters,
vol. 96, no. 22, American Physical Society, 2006, doi:10.1103/PhysRevLett.96.226106.
short: G. Costantini, A. Rastelli, C. Manzano, P. Acosta Diaz, R. Songmuang, G.
Katsaros, O. Schmidt, K. Kern, Physical Review Letters 96 (2006).
date_created: 2018-12-11T11:53:47Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:52:56Z
day: '01'
doi: 10.1103/PhysRevLett.96.226106
extern: 1
intvolume: ' 96'
issue: '22'
month: '01'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5378'
quality_controlled: 0
status: public
title: Interplay between thermodynamics and kinetics in the capping of InAs/GaAs (001)
quantum dots
type: journal_article
volume: 96
year: '2006'
...
---
_id: '1748'
abstract:
- lang: eng
text: The authors apply selective wet chemical etching and atomic force microscopy
to reveal the three-dimensional shape of SiGeSi (001) islands after capping with
Si. Although the "self-assembled quantum dots" remain practically unaffected
by capping in the temperature range of 300-450 °C, significant morphological changes
take place on the Si surface. At 450 °C, the morphology of the capping layer (Si
matrix) evolves toward an intriguing semifacetted structure, which we call a "ziggurat,"
giving the misleading impression of a stepped SiGe island shape.
author:
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Armando
full_name: Rastelli, Armando
last_name: Rastelli
- first_name: Mathieu
full_name: Stoffel, Mathieu
last_name: Stoffel
- first_name: Giovanni
full_name: Costantini, Giovanni
last_name: Costantini
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
- first_name: Klaus
full_name: Kern, Klaus
last_name: Kern
- first_name: Jerry
full_name: Tersoff, Jerry
last_name: Tersoff
- first_name: Elisabeth
full_name: Müller, Elisabeth
last_name: Müller
- first_name: Hans
full_name: Von Känel, Hans
last_name: Von Känel
citation:
ama: Katsaros G, Rastelli A, Stoffel M, et al. Evolution of buried semiconductor
nanostructures and origin of stepped surface mounds during capping. Applied
Physics Letters. 2006;89(25). doi:10.1063/1.2405876
apa: Katsaros, G., Rastelli, A., Stoffel, M., Costantini, G., Schmidt, O., Kern,
K., … Von Känel, H. (2006). Evolution of buried semiconductor nanostructures and
origin of stepped surface mounds during capping. Applied Physics Letters.
American Institute of Physics. https://doi.org/10.1063/1.2405876
chicago: Katsaros, Georgios, Armando Rastelli, Mathieu Stoffel, Giovanni Costantini,
Oliver Schmidt, Klaus Kern, Jerry Tersoff, Elisabeth Müller, and Hans Von Känel.
“Evolution of Buried Semiconductor Nanostructures and Origin of Stepped Surface
Mounds during Capping.” Applied Physics Letters. American Institute of
Physics, 2006. https://doi.org/10.1063/1.2405876.
ieee: G. Katsaros et al., “Evolution of buried semiconductor nanostructures
and origin of stepped surface mounds during capping,” Applied Physics Letters,
vol. 89, no. 25. American Institute of Physics, 2006.
ista: Katsaros G, Rastelli A, Stoffel M, Costantini G, Schmidt O, Kern K, Tersoff
J, Müller E, Von Känel H. 2006. Evolution of buried semiconductor nanostructures
and origin of stepped surface mounds during capping. Applied Physics Letters.
89(25).
mla: Katsaros, Georgios, et al. “Evolution of Buried Semiconductor Nanostructures
and Origin of Stepped Surface Mounds during Capping.” Applied Physics Letters,
vol. 89, no. 25, American Institute of Physics, 2006, doi:10.1063/1.2405876.
short: G. Katsaros, A. Rastelli, M. Stoffel, G. Costantini, O. Schmidt, K. Kern,
J. Tersoff, E. Müller, H. Von Känel, Applied Physics Letters 89 (2006).
date_created: 2018-12-11T11:53:48Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:52:57Z
day: '01'
doi: 10.1063/1.2405876
extern: 1
intvolume: ' 89'
issue: '25'
month: '01'
publication: Applied Physics Letters
publication_status: published
publisher: American Institute of Physics
publist_id: '5376'
quality_controlled: 0
status: public
title: Evolution of buried semiconductor nanostructures and origin of stepped surface
mounds during capping
type: journal_article
volume: 89
year: '2006'
...
---
_id: '1796'
abstract:
- lang: eng
text: Drugs that block the entry of human immunodeficiency virus type 1 (HIV-1)
into host cells abrogate the establishment of a productive infection and should
ideally diminish the chances of HIV-1 developing resistance. This review will
give an overview of the mechanism by which the envelope glycoprotein mediates
HIV-1 entry and will summarize current drug developments.
author:
- first_name: Sandra
full_name: Sandra Siegert
id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
last_name: Siegert
orcid: 0000-0001-8635-0877
- first_name: Peter
full_name: Schnierle, Peter
last_name: Schnierle
- first_name: Barbara
full_name: Schnierle, Barbara S
last_name: Schnierle
citation:
ama: 'Siegert S, Schnierle P, Schnierle B. Novel anti-viral therapy: Drugs that
block HIV entry at different target sites. Mini-Reviews in Medicinal Chemistry.
2006;6(5):557-562. doi:10.2174/138955706776876267'
apa: 'Siegert, S., Schnierle, P., & Schnierle, B. (2006). Novel anti-viral therapy:
Drugs that block HIV entry at different target sites. Mini-Reviews in Medicinal
Chemistry. Bentham Science Publishers. https://doi.org/10.2174/138955706776876267'
chicago: 'Siegert, Sandra, Peter Schnierle, and Barbara Schnierle. “Novel Anti-Viral
Therapy: Drugs That Block HIV Entry at Different Target Sites.” Mini-Reviews
in Medicinal Chemistry. Bentham Science Publishers, 2006. https://doi.org/10.2174/138955706776876267.'
ieee: 'S. Siegert, P. Schnierle, and B. Schnierle, “Novel anti-viral therapy: Drugs
that block HIV entry at different target sites,” Mini-Reviews in Medicinal
Chemistry, vol. 6, no. 5. Bentham Science Publishers, pp. 557–562, 2006.'
ista: 'Siegert S, Schnierle P, Schnierle B. 2006. Novel anti-viral therapy: Drugs
that block HIV entry at different target sites. Mini-Reviews in Medicinal Chemistry.
6(5), 557–562.'
mla: 'Siegert, Sandra, et al. “Novel Anti-Viral Therapy: Drugs That Block HIV Entry
at Different Target Sites.” Mini-Reviews in Medicinal Chemistry, vol. 6,
no. 5, Bentham Science Publishers, 2006, pp. 557–62, doi:10.2174/138955706776876267.'
short: S. Siegert, P. Schnierle, B. Schnierle, Mini-Reviews in Medicinal Chemistry
6 (2006) 557–562.
date_created: 2018-12-11T11:54:03Z
date_published: 2006-05-01T00:00:00Z
date_updated: 2021-01-12T06:53:15Z
day: '01'
doi: 10.2174/138955706776876267
extern: 1
intvolume: ' 6'
issue: '5'
month: '05'
page: 557 - 562
publication: Mini-Reviews in Medicinal Chemistry
publication_status: published
publisher: Bentham Science Publishers
publist_id: '5314'
quality_controlled: 0
status: public
title: 'Novel anti-viral therapy: Drugs that block HIV entry at different target sites'
type: journal_article
volume: 6
year: '2006'
...
---
_id: '1961'
abstract:
- lang: eng
text: |
Respiratory complex I plays a central role in cellular energy production in bacteria and mitochondria. Its dysfunction is implicated in many human neurodegenerative diseases, as well as in aging. The crystal structure of the hydrophilic domain (peripheral arm) of complex I from Thermus thermophilus has been solved at 3.3 angstrom resolution. This subcomplex consists of eight subunits and contains all the redox centers of the enzyme, including nine iron-sulfur clusters. The primary electron acceptor, flavin-mononucleotide, is within electron transfer distance of cluster N3, leading to the main redox pathway, and of the distal cluster Nia, a possible antioxidant. The structure reveals new aspects of the mechanism and evolution of the enzyme. The terminal cluster N2 is coordinated, uniquely, by two consecutive cysteines. The novel subunit Nqo15 has a similar fold to the mitochondrial iron chaperone frataxin, and it may be involved in iron-sulfur cluster regeneration in the complex.
acknowledgement: This work was funded by the Medical Research Council.
author:
- first_name: Leonid A
full_name: Leonid Sazanov
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
- first_name: Philip
full_name: 'Hinchliffe, Philip '
last_name: Hinchliffe
citation:
ama: Sazanov LA, Hinchliffe P. Structure of the hydrophilic domain of respiratory
complex I from Thermus thermophilus. Science. 2006;311(5766):1430-1436.
doi:10.1126/science.1123809
apa: Sazanov, L. A., & Hinchliffe, P. (2006). Structure of the hydrophilic domain
of respiratory complex I from Thermus thermophilus. Science. American Association
for the Advancement of Science. https://doi.org/10.1126/science.1123809
chicago: Sazanov, Leonid A, and Philip Hinchliffe. “Structure of the Hydrophilic
Domain of Respiratory Complex I from Thermus Thermophilus.” Science. American
Association for the Advancement of Science, 2006. https://doi.org/10.1126/science.1123809.
ieee: L. A. Sazanov and P. Hinchliffe, “Structure of the hydrophilic domain of respiratory
complex I from Thermus thermophilus,” Science, vol. 311, no. 5766. American
Association for the Advancement of Science, pp. 1430–1436, 2006.
ista: Sazanov LA, Hinchliffe P. 2006. Structure of the hydrophilic domain of respiratory
complex I from Thermus thermophilus. Science. 311(5766), 1430–1436.
mla: Sazanov, Leonid A., and Philip Hinchliffe. “Structure of the Hydrophilic Domain
of Respiratory Complex I from Thermus Thermophilus.” Science, vol. 311,
no. 5766, American Association for the Advancement of Science, 2006, pp. 1430–36,
doi:10.1126/science.1123809.
short: L.A. Sazanov, P. Hinchliffe, Science 311 (2006) 1430–1436.
date_created: 2018-12-11T11:54:56Z
date_published: 2006-03-10T00:00:00Z
date_updated: 2021-01-12T06:54:22Z
day: '10'
doi: 10.1126/science.1123809
extern: 1
intvolume: ' 311'
issue: '5766'
month: '03'
page: 1430 - 1436
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '5121'
quality_controlled: 0
status: public
title: Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
type: journal_article
volume: 311
year: '2006'
...
---
_id: '1966'
abstract:
- lang: eng
text: The hydrophilic domain (peripheral arm) of the proton-translocating NADH:quinone
oxidoreductase (complex I) from the thermophilic organism Thermus thermophilus
HB8 has been purified and characterized. The subcomplex is stable in sodium dodecyl
sulfate up to 80 °C. Of nine iron-sulfur clusters, four to five (one or two binuclear
and three tetranuclear) could be detected by EPR in the NADH-reduced enzyme. The
preparation consists of eight different polypeptides. Seven of them have been
positively identified by peptide mass mapping and N-terminal sequencing as known
hydrophilic subunits of T. thermophilus complex I. The eighth polypeptide copurified
with the subcomplex at all stages, is strongly associated with the other subunits,
and is present in crystals of the subcomplex, used for X-ray data collection.
Therefore, it has been identified as a novel complex I subunit and named Nqo15.
It is encoded in a locus separate from the nqo operon, containing the 14 other
known complex I genes. ORFs encoding Nqo15 homologues are present in the genomes
of the closest relatives of T. thermophilus. Our data show that, contrary to previous
assumptions, bacterial complex I can contain proteins in addition to a "core"
complement of 14 subunits.
author:
- first_name: Philip
full_name: 'Hinchliffe, Philip '
last_name: Hinchliffe
- first_name: Joe
full_name: Carroll, Joe D
last_name: Carroll
- first_name: Leonid A
full_name: Leonid Sazanov
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: Hinchliffe P, Carroll J, Sazanov LA. Identification of a novel subunit of respiratory
complex I from Thermus thermophilus. Biochemistry. 2006;45(14):4413-4420.
doi:10.1021/bi0600998
apa: Hinchliffe, P., Carroll, J., & Sazanov, L. A. (2006). Identification of
a novel subunit of respiratory complex I from Thermus thermophilus. Biochemistry.
ACS. https://doi.org/10.1021/bi0600998
chicago: Hinchliffe, Philip, Joe Carroll, and Leonid A Sazanov. “Identification
of a Novel Subunit of Respiratory Complex I from Thermus Thermophilus.” Biochemistry.
ACS, 2006. https://doi.org/10.1021/bi0600998.
ieee: P. Hinchliffe, J. Carroll, and L. A. Sazanov, “Identification of a novel subunit
of respiratory complex I from Thermus thermophilus,” Biochemistry, vol.
45, no. 14. ACS, pp. 4413–4420, 2006.
ista: Hinchliffe P, Carroll J, Sazanov LA. 2006. Identification of a novel subunit
of respiratory complex I from Thermus thermophilus. Biochemistry. 45(14), 4413–4420.
mla: Hinchliffe, Philip, et al. “Identification of a Novel Subunit of Respiratory
Complex I from Thermus Thermophilus.” Biochemistry, vol. 45, no. 14, ACS,
2006, pp. 4413–20, doi:10.1021/bi0600998.
short: P. Hinchliffe, J. Carroll, L.A. Sazanov, Biochemistry 45 (2006) 4413–4420.
date_created: 2018-12-11T11:54:57Z
date_published: 2006-04-11T00:00:00Z
date_updated: 2021-01-12T06:54:23Z
day: '11'
doi: 10.1021/bi0600998
extern: 1
intvolume: ' 45'
issue: '14'
month: '04'
page: 4413 - 4420
publication: Biochemistry
publication_status: published
publisher: ACS
publist_id: '5120'
quality_controlled: 0
status: public
title: Identification of a novel subunit of respiratory complex I from Thermus thermophilus
type: journal_article
volume: 45
year: '2006'
...
---
_id: '2066'
abstract:
- lang: eng
text: Although the X chromosome is usually similar to the autosomes in size and
cytogenetic appearance, theoretical models predict that its hemizygosity in males
may cause unusual patterns of evolution. The sequencing of several genomes has
indeed revealed differences between the X chromosome and the autosomes in the
rates of gene divergence, patterns of gene expression and rates of gene movement
between chromosomes. A better understanding of these patterns should provide valuable
information on the evolution of genes located on the X chromosome. It could also
suggest solutions to more general problems in molecular evolution, such as detecting
selection and estimating mutational effects on fitness
acknowledgement: B.V. is supported by a postgraduate fellowship from the Fundação
de Ciência e Tecnologia of Portugal, and B.C. by the Royal Society (UK)
author:
- first_name: Beatriz
full_name: Beatriz Vicoso
id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
last_name: Vicoso
orcid: 0000-0002-4579-8306
- first_name: Brian
full_name: Charlesworth, Brian
last_name: Charlesworth
citation:
ama: 'Vicoso B, Charlesworth B. Evolution on the X chromosome: Unusual patterns
and processes. Nature Reviews Genetics. 2006;7(8):645-653. doi:10.1038/nrg1914'
apa: 'Vicoso, B., & Charlesworth, B. (2006). Evolution on the X chromosome:
Unusual patterns and processes. Nature Reviews Genetics. Nature Publishing
Group. https://doi.org/10.1038/nrg1914'
chicago: 'Vicoso, Beatriz, and Brian Charlesworth. “Evolution on the X Chromosome:
Unusual Patterns and Processes.” Nature Reviews Genetics. Nature Publishing
Group, 2006. https://doi.org/10.1038/nrg1914.'
ieee: 'B. Vicoso and B. Charlesworth, “Evolution on the X chromosome: Unusual patterns
and processes,” Nature Reviews Genetics, vol. 7, no. 8. Nature Publishing
Group, pp. 645–653, 2006.'
ista: 'Vicoso B, Charlesworth B. 2006. Evolution on the X chromosome: Unusual patterns
and processes. Nature Reviews Genetics. 7(8), 645–653.'
mla: 'Vicoso, Beatriz, and Brian Charlesworth. “Evolution on the X Chromosome: Unusual
Patterns and Processes.” Nature Reviews Genetics, vol. 7, no. 8, Nature
Publishing Group, 2006, pp. 645–53, doi:10.1038/nrg1914.'
short: B. Vicoso, B. Charlesworth, Nature Reviews Genetics 7 (2006) 645–653.
date_created: 2018-12-11T11:55:31Z
date_published: 2006-08-01T00:00:00Z
date_updated: 2021-01-12T06:55:05Z
day: '01'
doi: 10.1038/nrg1914
extern: 1
intvolume: ' 7'
issue: '8'
month: '08'
page: 645 - 653
publication: Nature Reviews Genetics
publication_status: published
publisher: Nature Publishing Group
publist_id: '4973'
quality_controlled: 0
status: public
title: 'Evolution on the X chromosome: Unusual patterns and processes'
type: journal_article
volume: 7
year: '2006'
...
---
_id: '2077'
abstract:
- lang: eng
text: |-
We present an adaptive animation method for electrical discharges. Electrical discharges can be simulated using the dielectric breakdown model. Regular discretization of the governing Laplace equation leads to huge equation systems, and the computational cost of solving the equations quickly becomes prohibitive at high resolutions, especially for simulations in 3D. In contrast, our method discretizes the Laplace equation on an adaptive octree, reducing the size of the problem significantly, and making simulations of high resolution 3D datasets and even 3D animations feasible. In order to enhance realism for lightning animations, we propose a particle simulation that animates the residual positive charge. Thus, interaction of electrical discharges with their surroundings
can be simulated.
author:
- first_name: Bernd
full_name: Bernd Bickel
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
- first_name: Martin
full_name: Wicke, Martin
last_name: Wicke
- first_name: Markus
full_name: Gross, Markus
last_name: Gross
citation:
ama: 'Bickel B, Wicke M, Gross M. Adaptive simulation of electrical discharges.
In: IOS Press; 2006.'
apa: 'Bickel, B., Wicke, M., & Gross, M. (2006). Adaptive simulation of electrical
discharges. Presented at the VMV: Vision, Modeling, and Visualization, IOS Press.'
chicago: Bickel, Bernd, Martin Wicke, and Markus Gross. “Adaptive Simulation of
Electrical Discharges.” IOS Press, 2006.
ieee: 'B. Bickel, M. Wicke, and M. Gross, “Adaptive simulation of electrical discharges,”
presented at the VMV: Vision, Modeling, and Visualization, 2006.'
ista: 'Bickel B, Wicke M, Gross M. 2006. Adaptive simulation of electrical discharges.
VMV: Vision, Modeling, and Visualization.'
mla: Bickel, Bernd, et al. Adaptive Simulation of Electrical Discharges.
IOS Press, 2006.
short: B. Bickel, M. Wicke, M. Gross, in:, IOS Press, 2006.
conference:
name: 'VMV: Vision, Modeling, and Visualization'
date_created: 2018-12-11T11:55:34Z
date_published: 2006-11-01T00:00:00Z
date_updated: 2021-01-12T06:55:09Z
day: '01'
extern: 1
month: '11'
publication_status: published
publisher: IOS Press
publist_id: '4961'
quality_controlled: 0
status: public
title: Adaptive simulation of electrical discharges
type: conference
year: '2006'
...
---
_id: '2089'
abstract:
- lang: eng
text: We have measured 3D face geometry, skin reflectance, and subsurface scattering
using custom-built devices for 149 subjects of varying age, gender, and race.
We developed a novel skin reflectance model whose parameters can be estimated
from measurements. The model decomposes the large amount of measured skin data
into a spatially-varying analytic BRDF, a diffuse albedo map, and diffuse subsurface
scattering. Our model is intuitive, physically plausible, and - since we do not
use the original measured data - easy to edit as well. High-quality renderings
come close to reproducing real photographs. The analysis of the model parameters
for our sample population reveals variations according to subject age, gender,
skin type, and external factors (e.g., sweat, cold, or makeup). Using our statistics,
a user can edit the overall appearance of a face (e.g., changing skin type and
age) or change small-scale features using texture synthesis (e.g., adding moles
and freckles). We are making the collected statistics publicly available to the
research community for applications in face synthesis and analysis.
acknowledgement: 'Henrik Wann Jensen and Craig Donner were supported by a Sloan Fellowship
and the National Science Foundation under Grant No. 0305399. '
author:
- first_name: Tim
full_name: Weyrich, Tim
last_name: Weyrich
- first_name: Wojciech
full_name: Matusik, Wojciech
last_name: Matusik
- first_name: Hanspeter
full_name: Pfister, Hanspeter
last_name: Pfister
- first_name: Bernd
full_name: Bernd Bickel
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
- first_name: Craig
full_name: Donner, Craig
last_name: Donner
- first_name: Chien
full_name: Tu, Chien
last_name: Tu
- first_name: Janet
full_name: McAndless, Janet M
last_name: Mcandless
- first_name: Jinho
full_name: Lee, Jinho
last_name: Lee
- first_name: Addy
full_name: Ngan, Addy
last_name: Ngan
- first_name: Henrik
full_name: Jensen, Henrik W
last_name: Jensen
- first_name: Markus
full_name: Groß, Markus S
last_name: Groß
citation:
ama: Weyrich T, Matusik W, Pfister H, et al. Analysis of human faces using a measurement-based
skin reflectance model. ACM Transactions on Graphics. 2006;25(3):1013-1024.
doi:10.1145/1141911.1141987
apa: Weyrich, T., Matusik, W., Pfister, H., Bickel, B., Donner, C., Tu, C., … Groß,
M. (2006). Analysis of human faces using a measurement-based skin reflectance
model. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/1141911.1141987
chicago: Weyrich, Tim, Wojciech Matusik, Hanspeter Pfister, Bernd Bickel, Craig
Donner, Chien Tu, Janet Mcandless, et al. “Analysis of Human Faces Using a Measurement-Based
Skin Reflectance Model.” ACM Transactions on Graphics. ACM, 2006. https://doi.org/10.1145/1141911.1141987.
ieee: T. Weyrich et al., “Analysis of human faces using a measurement-based
skin reflectance model,” ACM Transactions on Graphics, vol. 25, no. 3.
ACM, pp. 1013–1024, 2006.
ista: Weyrich T, Matusik W, Pfister H, Bickel B, Donner C, Tu C, Mcandless J, Lee
J, Ngan A, Jensen H, Groß M. 2006. Analysis of human faces using a measurement-based
skin reflectance model. ACM Transactions on Graphics. 25(3), 1013–1024.
mla: Weyrich, Tim, et al. “Analysis of Human Faces Using a Measurement-Based Skin
Reflectance Model.” ACM Transactions on Graphics, vol. 25, no. 3, ACM,
2006, pp. 1013–24, doi:10.1145/1141911.1141987.
short: T. Weyrich, W. Matusik, H. Pfister, B. Bickel, C. Donner, C. Tu, J. Mcandless,
J. Lee, A. Ngan, H. Jensen, M. Groß, ACM Transactions on Graphics 25 (2006) 1013–1024.
date_created: 2018-12-11T11:55:38Z
date_published: 2006-07-31T00:00:00Z
date_updated: 2021-01-12T06:55:14Z
day: '31'
doi: 10.1145/1141911.1141987
extern: 1
intvolume: ' 25'
issue: '3'
month: '07'
page: 1013 - 1024
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4946'
quality_controlled: 0
status: public
title: Analysis of human faces using a measurement-based skin reflectance model
type: journal_article
volume: 25
year: '2006'
...
---
_id: '2088'
abstract:
- lang: eng
text: 'We have measured 3D face geometry, skin reflectance, and subsurface scattering
using custom-built devices for 149 subjects of varying age, gender, and race.
We developed a novel skin reflectance model whose parameters can be estimated
from measurements. The model decomposes the large amount of measured skin data
into a spatially-varying analytic BRDF, a diffuse albedo map, and diffuse subsurface
scattering. Our model is intuitive, physically plausible, and - since we do not
use the original measured data - easy to edit as well. High-quality renderings
come close to reproducing real photographs. The analysis of the model parameters
for our sample population reveals variations according to subject age, gender,
skin type, and external factors (e.g., sweat, cold, or makeup). Using our statistics,
a user can edit the overall appearance of a face (e.g., changing skin type and
age) or change small-scale features using texture synthesis (e.g., adding moles
and freckles). We are making the collected statistics publicly available to the
research community for applications in face synthesis and analysis. '
acknowledgement: Henrik Wann Jensen and Craig Donner were supported by a Sloan Fellowship
and the National Science Foundation under Grant No. 0305399.
author:
- first_name: Tim
full_name: Weyrich, Tim
last_name: Weyrich
- first_name: Wojciech
full_name: Matusik, Wojciech
last_name: Matusik
- first_name: Hanspeter
full_name: Pfister, Hanspeter
last_name: Pfister
- first_name: Bernd
full_name: Bernd Bickel
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
- first_name: Craig
full_name: Donner, Craig
last_name: Donner
- first_name: Chien
full_name: Tu, Chien
last_name: Tu
- first_name: Janet
full_name: McAndless, Janet M
last_name: Mcandless
- first_name: Jinho
full_name: Lee, Jinho
last_name: Lee
- first_name: Addy
full_name: Ngan, Addy
last_name: Ngan
- first_name: Henrik
full_name: Jensen, Henrik W
last_name: Jensen
- first_name: Markus
full_name: Groß, Markus S
last_name: Groß
citation:
ama: 'Weyrich T, Matusik W, Pfister H, et al. Analysis of human faces using a measurement-based
skin reflectance model. In: ACM; 2006:1013-1024. doi:10.1145/1179352.1141987'
apa: Weyrich, T., Matusik, W., Pfister, H., Bickel, B., Donner, C., Tu, C., … Groß,
M. (2006). Analysis of human faces using a measurement-based skin reflectance
model (pp. 1013–1024). Presented at the ACM SIGGRAPH, ACM. https://doi.org/10.1145/1179352.1141987
chicago: Weyrich, Tim, Wojciech Matusik, Hanspeter Pfister, Bernd Bickel, Craig
Donner, Chien Tu, Janet Mcandless, et al. “Analysis of Human Faces Using a Measurement-Based
Skin Reflectance Model,” 1013–24. ACM, 2006. https://doi.org/10.1145/1179352.1141987.
ieee: T. Weyrich et al., “Analysis of human faces using a measurement-based
skin reflectance model,” presented at the ACM SIGGRAPH, 2006, pp. 1013–1024.
ista: Weyrich T, Matusik W, Pfister H, Bickel B, Donner C, Tu C, Mcandless J, Lee
J, Ngan A, Jensen H, Groß M. 2006. Analysis of human faces using a measurement-based
skin reflectance model. ACM SIGGRAPH, 1013–1024.
mla: Weyrich, Tim, et al. Analysis of Human Faces Using a Measurement-Based Skin
Reflectance Model. ACM, 2006, pp. 1013–24, doi:10.1145/1179352.1141987.
short: T. Weyrich, W. Matusik, H. Pfister, B. Bickel, C. Donner, C. Tu, J. Mcandless,
J. Lee, A. Ngan, H. Jensen, M. Groß, in:, ACM, 2006, pp. 1013–1024.
conference:
name: ACM SIGGRAPH
date_created: 2018-12-11T11:55:38Z
date_published: 2006-07-31T00:00:00Z
date_updated: 2021-01-12T06:55:14Z
day: '31'
doi: 10.1145/1179352.1141987
extern: 1
month: '07'
page: 1013 - 1024
publication_status: published
publisher: ACM
publist_id: '4947'
quality_controlled: 0
status: public
title: Analysis of human faces using a measurement-based skin reflectance model
type: conference
year: '2006'
...
---
_id: '2090'
author:
- first_name: Bernd
full_name: Bernd Bickel
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
- first_name: Tim
full_name: Weyrich, Tim
last_name: Weyrich
- first_name: Wojciech
full_name: Matusik, Wojciech
last_name: Matusik
- first_name: Hanspeter
full_name: Pfister, Hanspeter
last_name: Pfister
- first_name: Craig
full_name: Donner, Craig
last_name: Donner
- first_name: Chien
full_name: Tu, Chien
last_name: Tu
- first_name: Janet
full_name: McAndless, Janet M
last_name: Mcandless
- first_name: Jinho
full_name: Lee, Jinho
last_name: Lee
- first_name: Addy
full_name: Ngan, Addy
last_name: Ngan
- first_name: Henrik
full_name: Jensen, Henrik W
last_name: Jensen
- first_name: Markus
full_name: Groß, Markus S
last_name: Groß
citation:
ama: 'Bickel B, Weyrich T, Matusik W, et al. Processing and editing of faces using
a measurement-based skin reflectance model. In: ACM; 2006. doi:10.1145/1179849.1180059'
apa: 'Bickel, B., Weyrich, T., Matusik, W., Pfister, H., Donner, C., Tu, C., … Groß,
M. (2006). Processing and editing of faces using a measurement-based skin reflectance
model. Presented at the SIGGRAPH: Special Interest Group on Computer Graphics
and Interactive Techniques, ACM. https://doi.org/10.1145/1179849.1180059'
chicago: Bickel, Bernd, Tim Weyrich, Wojciech Matusik, Hanspeter Pfister, Craig
Donner, Chien Tu, Janet Mcandless, et al. “Processing and Editing of Faces Using
a Measurement-Based Skin Reflectance Model.” ACM, 2006. https://doi.org/10.1145/1179849.1180059.
ieee: 'B. Bickel et al., “Processing and editing of faces using a measurement-based
skin reflectance model,” presented at the SIGGRAPH: Special Interest Group on
Computer Graphics and Interactive Techniques, 2006.'
ista: 'Bickel B, Weyrich T, Matusik W, Pfister H, Donner C, Tu C, Mcandless J, Lee
J, Ngan A, Jensen H, Groß M. 2006. Processing and editing of faces using a measurement-based
skin reflectance model. SIGGRAPH: Special Interest Group on Computer Graphics
and Interactive Techniques.'
mla: Bickel, Bernd, et al. Processing and Editing of Faces Using a Measurement-Based
Skin Reflectance Model. ACM, 2006, doi:10.1145/1179849.1180059.
short: B. Bickel, T. Weyrich, W. Matusik, H. Pfister, C. Donner, C. Tu, J. Mcandless,
J. Lee, A. Ngan, H. Jensen, M. Groß, in:, ACM, 2006.
conference:
name: 'SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques'
date_created: 2018-12-11T11:55:39Z
date_published: 2006-07-01T00:00:00Z
date_updated: 2021-01-12T06:55:15Z
day: '01'
doi: 10.1145/1179849.1180059
extern: 1
month: '07'
publication_status: published
publisher: ACM
publist_id: '4945'
quality_controlled: 0
status: public
title: Processing and editing of faces using a measurement-based skin reflectance
model
type: conference
year: '2006'
...
---
_id: '2134'
abstract:
- lang: eng
text: Predissociation of the N+2 C 2Σ+u(v') vibrational levels with v' ≥ 3 was observed
via dispersed C 2Σ+u → X 2Σ+g fluorescence in the spectral range of 165–208 nm
after resonant 1s−1π*(vr) excitation of N2 and its subsequent autoionization into
the N+2 C state. This range is dominated by lines in atomic nitrogen, by overlapped
C 2Σ+u(v') → X 2Σ+g(v'') vibrational band sequences with Δv = const and broad
unresolved band systems (D, (2))2Πg(v') → A2Πu(v'') in the N+2 molecular ion.
With very high fluorescence resolution of about 0.1 nm FWHM individual C 2Σ+u(v')
→ X 2Σ+g(v'') vibrational bands have been resolved. Calculation of the observed
fluorescence spectra by taking into account predissociation and molecular rotation
describes well the shape of both individual vibrational bands C 2Σ+u(v') → X 2Σ+g(v'')
and the whole band system.
acknowledgement: This work has been supported by the Deutsche Forschungsgemeinschaft
(DFG) and by the Bundesministerium für Bildung und Forschung (BMBF) (Förderkennzeichen
05 ES3XBA/5 and IB/DLR RUS 02/037). The cooperation between the groups at the universities
of Kaiserslautern and Rostov-on-Don was supported by the Alexander-von-Humboldt
Foundation within the framework of an institute partnership with funds from BMBF
author:
- first_name: Arno
full_name: Ehresmann, Arno
last_name: Ehresmann
- first_name: Lutz
full_name: Werner, Lutz
last_name: Werner
- first_name: Stefan
full_name: Klumpp, Stefan
last_name: Klumpp
- first_name: Ph
full_name: Demekhin, Ph V
last_name: Demekhin
- first_name: Mikhail
full_name: Mikhail Lemeshko
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: V.
full_name: Sukhorukov, V. L
last_name: Sukhorukov
- first_name: Karl
full_name: Schartner, Karl H
last_name: Schartner
- first_name: Hans
full_name: Schmoranzer, Hans P
last_name: Schmoranzer
citation:
ama: 'Ehresmann A, Werner L, Klumpp S, et al. Predissociation of the N+2(C 2Σ+u)
state observed via C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation
of N2 molecule. Journal of Physics B: Atomic, Molecular and Optical Physics.
2006;39(6):L119-L126. doi:10.1088/0953-4075/39/6/L03'
apa: 'Ehresmann, A., Werner, L., Klumpp, S., Demekhin, P., Lemeshko, M., Sukhorukov,
V., … Schmoranzer, H. (2006). Predissociation of the N+2(C 2Σ+u) state observed
via C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation of N2 molecule.
Journal of Physics B: Atomic, Molecular and Optical Physics. IOP Publishing
Ltd. https://doi.org/10.1088/0953-4075/39/6/L03'
chicago: 'Ehresmann, Arno, Lutz Werner, Stefan Klumpp, Ph Demekhin, Mikhail Lemeshko,
V. Sukhorukov, Karl Schartner, and Hans Schmoranzer. “Predissociation of the N+2(C
2Σ+u) State Observed via C 2Σ+u → X 2Σ+g Fluorescence after Resonant 1s−1π* Excitation
of N2 Molecule.” Journal of Physics B: Atomic, Molecular and Optical Physics.
IOP Publishing Ltd., 2006. https://doi.org/10.1088/0953-4075/39/6/L03.'
ieee: 'A. Ehresmann et al., “Predissociation of the N+2(C 2Σ+u) state observed
via C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation of N2 molecule,”
Journal of Physics B: Atomic, Molecular and Optical Physics, vol. 39, no.
6. IOP Publishing Ltd., pp. L119–L126, 2006.'
ista: 'Ehresmann A, Werner L, Klumpp S, Demekhin P, Lemeshko M, Sukhorukov V, Schartner
K, Schmoranzer H. 2006. Predissociation of the N+2(C 2Σ+u) state observed via
C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation of N2 molecule.
Journal of Physics B: Atomic, Molecular and Optical Physics. 39(6), L119–L126.'
mla: 'Ehresmann, Arno, et al. “Predissociation of the N+2(C 2Σ+u) State Observed
via C 2Σ+u → X 2Σ+g Fluorescence after Resonant 1s−1π* Excitation of N2 Molecule.”
Journal of Physics B: Atomic, Molecular and Optical Physics, vol. 39, no.
6, IOP Publishing Ltd., 2006, pp. L119–26, doi:10.1088/0953-4075/39/6/L03.'
short: 'A. Ehresmann, L. Werner, S. Klumpp, P. Demekhin, M. Lemeshko, V. Sukhorukov,
K. Schartner, H. Schmoranzer, Journal of Physics B: Atomic, Molecular and Optical
Physics 39 (2006) L119–L126.'
date_created: 2018-12-11T11:55:54Z
date_published: 2006-03-28T00:00:00Z
date_updated: 2021-01-12T06:55:31Z
day: '28'
doi: 10.1088/0953-4075/39/6/L03
extern: 1
intvolume: ' 39'
issue: '6'
month: '03'
page: L119 - L126
publication: 'Journal of Physics B: Atomic, Molecular and Optical Physics'
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '4900'
quality_controlled: 0
status: public
title: Predissociation of the N+2(C 2Σ+u) state observed via C 2Σ+u → X 2Σ+g fluorescence
after resonant 1s−1π* excitation of N2 molecule
type: journal_article
volume: 39
year: '2006'
...
---
_id: '213'
abstract:
- lang: eng
text: For any integers d,n ≥2, let X ⊂ Pn be a non‐singular hypersurface of degree
d that is defined over the rational numbers. The main result in this paper is
a proof that the number of rational points on X which have height at most B is
O(Bn − 1 + ɛ), for any ɛ > 0. The implied constant in this estimate depends
at most upon d, ɛ and n. 2000 Mathematics Subject Classification 11D45 (primary),
11G35, 14G05 (secondary).
acknowledgement: EPSRC grant number GR/R93155/01
author:
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Roger
full_name: Heath-Brown, Roger
last_name: Heath Brown
- first_name: Jason
full_name: Starr, Jason M
last_name: Starr
citation:
ama: Browning TD, Heath Brown R, Starr J. The density of rational points on non-singular
hypersurfaces, II. Proceedings of the London Mathematical Society. 2006;93(2):273-303.
doi:https://doi.org/10.1112/S0024611506015784
apa: Browning, T. D., Heath Brown, R., & Starr, J. (2006). The density of rational
points on non-singular hypersurfaces, II. Proceedings of the London Mathematical
Society. John Wiley and Sons Ltd. https://doi.org/10.1112/S0024611506015784
chicago: Browning, Timothy D, Roger Heath Brown, and Jason Starr. “The Density of
Rational Points on Non-Singular Hypersurfaces, II.” Proceedings of the London
Mathematical Society. John Wiley and Sons Ltd, 2006. https://doi.org/10.1112/S0024611506015784.
ieee: T. D. Browning, R. Heath Brown, and J. Starr, “The density of rational points
on non-singular hypersurfaces, II,” Proceedings of the London Mathematical
Society, vol. 93, no. 2. John Wiley and Sons Ltd, pp. 273–303, 2006.
ista: Browning TD, Heath Brown R, Starr J. 2006. The density of rational points
on non-singular hypersurfaces, II. Proceedings of the London Mathematical Society.
93(2), 273–303.
mla: Browning, Timothy D., et al. “The Density of Rational Points on Non-Singular
Hypersurfaces, II.” Proceedings of the London Mathematical Society, vol.
93, no. 2, John Wiley and Sons Ltd, 2006, pp. 273–303, doi:https://doi.org/10.1112/S0024611506015784.
short: T.D. Browning, R. Heath Brown, J. Starr, Proceedings of the London Mathematical
Society 93 (2006) 273–303.
date_created: 2018-12-11T11:45:14Z
date_published: 2006-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:29Z
day: '01'
doi: https://doi.org/10.1112/S0024611506015784
extern: 1
intvolume: ' 93'
issue: '2'
month: '09'
page: 273 - 303
publication: Proceedings of the London Mathematical Society
publication_status: published
publisher: John Wiley and Sons Ltd
publist_id: '7698'
quality_controlled: 0
status: public
title: The density of rational points on non-singular hypersurfaces, II
type: journal_article
volume: 93
year: '2006'
...
---
_id: '2144'
abstract:
- lang: eng
text: 'Temperature dependent preedge and extended x-ray absorption fine structure
measurements at the Zr K edge for the perovskite-type zirconates Pb Zr0.515 Ti0.485
O3 (PZT), PbZr O3 (PZ), and BaZr O3 are performed. To carry out a more accurate
study of the weak reconstruction of the local atomic structure we employed a combination
of two techniques: (i) analysis of the preedge fine structure, and (ii) analysis
of the Fourier transform of the difference between χ (k) functions obtained at
different temperatures. A detailed investigation of local atomic structure in
the cubic phase for all the crystals is also performed. It is shown that neither
the displacive nor the order-disorder model can describe correctly the changes
of local atomic structure during phase transitions in PZ and PZT. A spherical
model describing the local atomic structure of perovskite-type crystals suffering
structural phase transitions is proposed.'
acknowledgement: The studies were supported by the Russian Ministry of Science and
Education Grant No. R662. E.N. acknowledges partial support from the French Government
*CNOUS.
author:
- first_name: Rostislav
full_name: Vedrinskiǐ, Rostislav V
last_name: Vedrinskiǐ
- first_name: Elena
full_name: Nazarenko, Elena S
last_name: Nazarenko
- first_name: Mikhail
full_name: Mikhail Lemeshko
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Vivian
full_name: Nassif, Vivian M
last_name: Nassif
- first_name: Olivier
full_name: Proux, Olivier
last_name: Proux
- first_name: Alexander
full_name: Novakovich, Alexander A
last_name: Novakovich
- first_name: Yves
full_name: Joly, Yves
last_name: Joly
citation:
ama: Vedrinskiǐ R, Nazarenko E, Lemeshko M, et al. Temperature dependent XAFS studies
of local atomic structure of the perovskite-type zirconates. Physical Review
B - Condensed Matter and Materials Physics. 2006;73(13). doi:10.1103/PhysRevB.73.134109
apa: Vedrinskiǐ, R., Nazarenko, E., Lemeshko, M., Nassif, V., Proux, O., Novakovich,
A., & Joly, Y. (2006). Temperature dependent XAFS studies of local atomic
structure of the perovskite-type zirconates. Physical Review B - Condensed
Matter and Materials Physics. American Physical Society. https://doi.org/10.1103/PhysRevB.73.134109
chicago: Vedrinskiǐ, Rostislav, Elena Nazarenko, Mikhail Lemeshko, Vivian Nassif,
Olivier Proux, Alexander Novakovich, and Yves Joly. “Temperature Dependent XAFS
Studies of Local Atomic Structure of the Perovskite-Type Zirconates.” Physical
Review B - Condensed Matter and Materials Physics. American Physical Society,
2006. https://doi.org/10.1103/PhysRevB.73.134109.
ieee: R. Vedrinskiǐ et al., “Temperature dependent XAFS studies of local
atomic structure of the perovskite-type zirconates,” Physical Review B - Condensed
Matter and Materials Physics, vol. 73, no. 13. American Physical Society,
2006.
ista: Vedrinskiǐ R, Nazarenko E, Lemeshko M, Nassif V, Proux O, Novakovich A, Joly
Y. 2006. Temperature dependent XAFS studies of local atomic structure of the perovskite-type
zirconates. Physical Review B - Condensed Matter and Materials Physics. 73(13).
mla: Vedrinskiǐ, Rostislav, et al. “Temperature Dependent XAFS Studies of Local
Atomic Structure of the Perovskite-Type Zirconates.” Physical Review B - Condensed
Matter and Materials Physics, vol. 73, no. 13, American Physical Society,
2006, doi:10.1103/PhysRevB.73.134109.
short: R. Vedrinskiǐ, E. Nazarenko, M. Lemeshko, V. Nassif, O. Proux, A. Novakovich,
Y. Joly, Physical Review B - Condensed Matter and Materials Physics 73 (2006).
date_created: 2018-12-11T11:55:58Z
date_published: 2006-04-17T00:00:00Z
date_updated: 2021-01-12T06:55:34Z
day: '17'
doi: 10.1103/PhysRevB.73.134109
extern: 1
intvolume: ' 73'
issue: '13'
month: '04'
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '4881'
quality_controlled: 0
status: public
title: Temperature dependent XAFS studies of local atomic structure of the perovskite-type
zirconates
type: journal_article
volume: 73
year: '2006'
...
---
_id: '2142'
abstract:
- lang: eng
text: Fluorescence from fragments formed after the de-excitation of the N*2(1s−1π*)
resonance has been measured in the spectral range of 135–190 nm. This range is
dominated by lines in atomic nitrogen and lines formed by overlapping C2Σ+u(v')
→ X2Σ+g(v'') bands with Δv = const in the N+2 molecular ion which result from
the spectator Auger decays of the N*2(1s−1π*(vr)) resonances. Ab initio calculations
of the corresponding potential curves and transition probabilities showed that
the observed irregular intensity dependence of the C2Σ+u(v') → X2Σ+g(v'')(Δv =
const) fluorescence lines on the vibrational quantum number vr is due to transitions
between vibrational levels during the reaction N2(v0 = 0)→ N*2(1s−1π*(vr)) Longrightarrow
C2Σ+u(v') → X2Σ+g(v'').
author:
- first_name: Arno
full_name: Ehresmann, Arno
last_name: Ehresmann
- first_name: Lutz
full_name: Werner, Lutz
last_name: Werner
- first_name: Stefan
full_name: Klumpp, Stefan
last_name: Klumpp
- first_name: S
full_name: Lucht, S
last_name: Lucht
- first_name: Hans
full_name: Schmoranzer, Hans P
last_name: Schmoranzer
- first_name: Sascha
full_name: Mickat, Sascha
last_name: Mickat
- first_name: Rüdiger
full_name: Schill, Rüdiger H
last_name: Schill
- first_name: Karl
full_name: Schartner, Karl H
last_name: Schartner
- first_name: Philipp
full_name: Demekhin, Philipp
last_name: Demekhin
- first_name: Mikhail
full_name: Mikhail Lemeshko
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Victor
full_name: Sukhorukov, Victor L
last_name: Sukhorukov
citation:
ama: 'Ehresmann A, Werner L, Klumpp S, et al. Studying the N+2(C2Σ+u → X2Σ+g) fluorescence
excited via the 1s−1π* resonance. Journal of Physics B: Atomic, Molecular and
Optical Physics. 2006;39(2):283-304. doi:10.1088/0953-4075/39/2/006'
apa: 'Ehresmann, A., Werner, L., Klumpp, S., Lucht, S., Schmoranzer, H., Mickat,
S., … Sukhorukov, V. (2006). Studying the N+2(C2Σ+u → X2Σ+g) fluorescence excited
via the 1s−1π* resonance. Journal of Physics B: Atomic, Molecular and Optical
Physics. IOP Publishing Ltd. https://doi.org/10.1088/0953-4075/39/2/006'
chicago: 'Ehresmann, Arno, Lutz Werner, Stefan Klumpp, S Lucht, Hans Schmoranzer,
Sascha Mickat, Rüdiger Schill, et al. “Studying the N+2(C2Σ+u → X2Σ+g) Fluorescence
Excited via the 1s−1π* Resonance.” Journal of Physics B: Atomic, Molecular
and Optical Physics. IOP Publishing Ltd., 2006. https://doi.org/10.1088/0953-4075/39/2/006.'
ieee: 'A. Ehresmann et al., “Studying the N+2(C2Σ+u → X2Σ+g) fluorescence
excited via the 1s−1π* resonance,” Journal of Physics B: Atomic, Molecular
and Optical Physics, vol. 39, no. 2. IOP Publishing Ltd., pp. 283–304, 2006.'
ista: 'Ehresmann A, Werner L, Klumpp S, Lucht S, Schmoranzer H, Mickat S, Schill
R, Schartner K, Demekhin P, Lemeshko M, Sukhorukov V. 2006. Studying the N+2(C2Σ+u
→ X2Σ+g) fluorescence excited via the 1s−1π* resonance. Journal of Physics B:
Atomic, Molecular and Optical Physics. 39(2), 283–304.'
mla: 'Ehresmann, Arno, et al. “Studying the N+2(C2Σ+u → X2Σ+g) Fluorescence Excited
via the 1s−1π* Resonance.” Journal of Physics B: Atomic, Molecular and Optical
Physics, vol. 39, no. 2, IOP Publishing Ltd., 2006, pp. 283–304, doi:10.1088/0953-4075/39/2/006.'
short: 'A. Ehresmann, L. Werner, S. Klumpp, S. Lucht, H. Schmoranzer, S. Mickat,
R. Schill, K. Schartner, P. Demekhin, M. Lemeshko, V. Sukhorukov, Journal of Physics
B: Atomic, Molecular and Optical Physics 39 (2006) 283–304.'
date_created: 2018-12-11T11:55:57Z
date_published: 2006-01-28T00:00:00Z
date_updated: 2021-01-12T06:55:34Z
day: '28'
doi: 10.1088/0953-4075/39/2/006
extern: 1
intvolume: ' 39'
issue: '2'
month: '01'
page: 283 - 304
publication: 'Journal of Physics B: Atomic, Molecular and Optical Physics'
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '4882'
quality_controlled: 0
status: public
title: Studying the N+2(C2Σ+u → X2Σ+g) fluorescence excited via the 1s−1π* resonance
type: journal_article
volume: 39
year: '2006'
...
---
_id: '215'
abstract:
- lang: eng
text: For any n≥3, let F ∈ Z[X0,...,Xn ] be a form of degree d *≥5 that defines
a non-singular hypersurface X ⊂ Pn . The main result in this paper is a proof
of the fact that the number N (F ; B) of Q-rational points on X which have height
at most B satisfiesN (F ; B) = Od,ε,n (Bn −1+ε ), for any ε > 0. The implied
constant in this estimate depends at most upon d, ε and n. New estimates are also
obtained for the number of representations of a positive integer as the sum of
three dth powers, and for the paucity of integer solutions to equal sums of like
polynomials.*
author:
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Roger
full_name: Heath-Brown, Roger
last_name: Heath Brown
citation:
ama: Browning TD, Heath Brown R. The density of rational points on non-singular
hypersurfaces, I. Bulletin of the London Mathematical Society. 2006;38(3):401-410.
doi:10.1112/S0024609305018412
apa: Browning, T. D., & Heath Brown, R. (2006). The density of rational points
on non-singular hypersurfaces, I. Bulletin of the London Mathematical Society.
Wiley-Blackwell. https://doi.org/10.1112/S0024609305018412
chicago: Browning, Timothy D, and Roger Heath Brown. “The Density of Rational Points
on Non-Singular Hypersurfaces, I.” Bulletin of the London Mathematical Society.
Wiley-Blackwell, 2006. https://doi.org/10.1112/S0024609305018412.
ieee: T. D. Browning and R. Heath Brown, “The density of rational points on non-singular
hypersurfaces, I,” Bulletin of the London Mathematical Society, vol. 38,
no. 3. Wiley-Blackwell, pp. 401–410, 2006.
ista: Browning TD, Heath Brown R. 2006. The density of rational points on non-singular
hypersurfaces, I. Bulletin of the London Mathematical Society. 38(3), 401–410.
mla: Browning, Timothy D., and Roger Heath Brown. “The Density of Rational Points
on Non-Singular Hypersurfaces, I.” Bulletin of the London Mathematical Society,
vol. 38, no. 3, Wiley-Blackwell, 2006, pp. 401–10, doi:10.1112/S0024609305018412.
short: T.D. Browning, R. Heath Brown, Bulletin of the London Mathematical Society
38 (2006) 401–410.
date_created: 2018-12-11T11:45:15Z
date_published: 2006-12-23T00:00:00Z
date_updated: 2021-01-12T06:55:36Z
day: '23'
doi: 10.1112/S0024609305018412
extern: 1
intvolume: ' 38'
issue: '3'
month: '12'
page: 401 - 410
publication: Bulletin of the London Mathematical Society
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7697'
quality_controlled: 0
status: public
title: The density of rational points on non-singular hypersurfaces, I
type: journal_article
volume: 38
year: '2006'
...
---
_id: '216'
abstract:
- lang: eng
text: For any N ≥ 2, let Z ⊂ ℙN be a geometrically integral algebraic variety of
degree d. This article is concerned with the number Nz(B) of ℚ-rational points
on Z which have height at most B. For any ε > 0, we establish the estimate
NZ(B) = O d,ε,N(Bdim Z+ε), provided that d ≥ 6. As indicated, the implied constant
depends at most on d, ε, and N.
author:
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Roger
full_name: Heath-Brown, Roger
last_name: Heath Brown
- first_name: Per
full_name: Salberger, Per
last_name: Salberger
citation:
ama: Browning TD, Heath Brown R, Salberger P. Counting rational points on algebraic
varieties. Duke Mathematical Journal. 2006;132(3):545-578. doi:10.1215/S0012-7094-06-13236-2
apa: Browning, T. D., Heath Brown, R., & Salberger, P. (2006). Counting rational
points on algebraic varieties. Duke Mathematical Journal. Unknown. https://doi.org/10.1215/S0012-7094-06-13236-2
chicago: Browning, Timothy D, Roger Heath Brown, and Per Salberger. “Counting Rational
Points on Algebraic Varieties.” Duke Mathematical Journal. Unknown, 2006.
https://doi.org/10.1215/S0012-7094-06-13236-2.
ieee: T. D. Browning, R. Heath Brown, and P. Salberger, “Counting rational points
on algebraic varieties,” Duke Mathematical Journal, vol. 132, no. 3. Unknown,
pp. 545–578, 2006.
ista: Browning TD, Heath Brown R, Salberger P. 2006. Counting rational points on
algebraic varieties. Duke Mathematical Journal. 132(3), 545–578.
mla: Browning, Timothy D., et al. “Counting Rational Points on Algebraic Varieties.”
Duke Mathematical Journal, vol. 132, no. 3, Unknown, 2006, pp. 545–78,
doi:10.1215/S0012-7094-06-13236-2.
short: T.D. Browning, R. Heath Brown, P. Salberger, Duke Mathematical Journal 132
(2006) 545–578.
date_created: 2018-12-11T11:45:15Z
date_published: 2006-04-15T00:00:00Z
date_updated: 2021-01-12T06:55:41Z
day: '15'
doi: 10.1215/S0012-7094-06-13236-2
extern: 1
intvolume: ' 132'
issue: '3'
month: '04'
page: 545 - 578
publication: Duke Mathematical Journal
publication_status: published
publisher: Unknown
publist_id: '7696'
quality_controlled: 0
status: public
title: Counting rational points on algebraic varieties
type: journal_article
volume: 132
year: '2006'
...
---
_id: '218'
abstract:
- lang: eng
text: This paper is concerned with the average order of certain arithmetic functions,
as they range over the values taken by binary forms.
author:
- first_name: Régis
full_name: de la Bretèche, Régis
last_name: De La Bretèche
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: De La Bretèche R, Browning TD. Sums of arithmetic functions over values of
binary forms. Acta Arithmetica. 2006;125(3):291-304. doi:10.4064/aa125-3-6
apa: De La Bretèche, R., & Browning, T. D. (2006). Sums of arithmetic functions
over values of binary forms. Acta Arithmetica. Instytut Matematyczny. https://doi.org/10.4064/aa125-3-6
chicago: De La Bretèche, Régis, and Timothy D Browning. “Sums of Arithmetic Functions
over Values of Binary Forms.” Acta Arithmetica. Instytut Matematyczny,
2006. https://doi.org/10.4064/aa125-3-6.
ieee: R. De La Bretèche and T. D. Browning, “Sums of arithmetic functions over values
of binary forms,” Acta Arithmetica, vol. 125, no. 3. Instytut Matematyczny,
pp. 291–304, 2006.
ista: De La Bretèche R, Browning TD. 2006. Sums of arithmetic functions over values
of binary forms. Acta Arithmetica. 125(3), 291–304.
mla: De La Bretèche, Régis, and Timothy D. Browning. “Sums of Arithmetic Functions
over Values of Binary Forms.” Acta Arithmetica, vol. 125, no. 3, Instytut
Matematyczny, 2006, pp. 291–304, doi:10.4064/aa125-3-6.
short: R. De La Bretèche, T.D. Browning, Acta Arithmetica 125 (2006) 291–304.
date_created: 2018-12-11T11:45:16Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:49Z
day: '01'
doi: 10.4064/aa125-3-6
extern: 1
intvolume: ' 125'
issue: '3'
month: '01'
page: 291 - 304
publication: Acta Arithmetica
publication_status: published
publisher: Instytut Matematyczny
publist_id: '7694'
quality_controlled: 0
status: public
title: Sums of arithmetic functions over values of binary forms
type: journal_article
volume: 125
year: '2006'
...
---
_id: '2333'
alternative_title:
- Contemporary Mathematics
author:
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
citation:
ama: 'Lieb É, Seiringer R, Solovej J. Ground-state energy of a dilute Fermi gas.
In: Vol 412. American Mathematical Society; 2006:239-248. doi:10.1090/conm/412'
apa: Lieb, É., Seiringer, R., & Solovej, J. (2006). Ground-state energy of a
dilute Fermi gas (Vol. 412, pp. 239–248). Presented at the Differential Equations
and Mathematical Physics, American Mathematical Society. https://doi.org/10.1090/conm/412
chicago: Lieb, Élliott, Robert Seiringer, and Jan Solovej. “Ground-State Energy
of a Dilute Fermi Gas,” 412:239–48. American Mathematical Society, 2006. https://doi.org/10.1090/conm/412.
ieee: É. Lieb, R. Seiringer, and J. Solovej, “Ground-state energy of a dilute Fermi
gas,” presented at the Differential Equations and Mathematical Physics, 2006,
vol. 412, pp. 239–248.
ista: Lieb É, Seiringer R, Solovej J. 2006. Ground-state energy of a dilute Fermi
gas. Differential Equations and Mathematical Physics, Contemporary Mathematics,
vol. 412, 239–248.
mla: Lieb, Élliott, et al. Ground-State Energy of a Dilute Fermi Gas. Vol.
412, American Mathematical Society, 2006, pp. 239–48, doi:10.1090/conm/412.
short: É. Lieb, R. Seiringer, J. Solovej, in:, American Mathematical Society, 2006,
pp. 239–248.
conference:
name: Differential Equations and Mathematical Physics
date_created: 2018-12-11T11:57:03Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:51Z
day: '01'
doi: 10.1090/conm/412
extern: 1
intvolume: ' 412'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0507049
month: '01'
oa: 1
page: 239 - 248
publication_status: published
publisher: American Mathematical Society
publist_id: '4593'
quality_controlled: 0
status: public
title: Ground-state energy of a dilute Fermi gas
type: conference
volume: 412
year: '2006'
...
---
_id: '2334'
author:
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Jakob
full_name: Yngvason, Jakob
last_name: Yngvason
citation:
ama: 'Seiringer R, Lieb É, Yngvason J. One-dimensional behavior of dilute, trapped
Bose gases in traps. In: Zambrini J, ed. World Scientific Publishing; 2006. doi:10.1007/s00220-003-0993-3'
apa: 'Seiringer, R., Lieb, É., & Yngvason, J. (2006). One-dimensional behavior
of dilute, trapped Bose gases in traps. In J. Zambrini (Ed.). Presented at the
ICMP: International Congress on Mathematical Physics, World Scientific Publishing.
https://doi.org/10.1007/s00220-003-0993-3'
chicago: Seiringer, Robert, Élliott Lieb, and Jakob Yngvason. “One-Dimensional Behavior
of Dilute, Trapped Bose Gases in Traps.” edited by Jean Zambrini. World Scientific
Publishing, 2006. https://doi.org/10.1007/s00220-003-0993-3.
ieee: 'R. Seiringer, É. Lieb, and J. Yngvason, “One-dimensional behavior of dilute,
trapped Bose gases in traps,” presented at the ICMP: International Congress on
Mathematical Physics, 2006.'
ista: 'Seiringer R, Lieb É, Yngvason J. 2006. One-dimensional behavior of dilute,
trapped Bose gases in traps. ICMP: International Congress on Mathematical Physics.'
mla: Seiringer, Robert, et al. One-Dimensional Behavior of Dilute, Trapped Bose
Gases in Traps. Edited by Jean Zambrini, World Scientific Publishing, 2006,
doi:10.1007/s00220-003-0993-3.
short: R. Seiringer, É. Lieb, J. Yngvason, in:, J. Zambrini (Ed.), World Scientific
Publishing, 2006.
conference:
name: 'ICMP: International Congress on Mathematical Physics'
date_created: 2018-12-11T11:57:03Z
date_published: 2006-03-07T00:00:00Z
date_updated: 2021-01-12T06:56:51Z
day: '07'
doi: 10.1007/s00220-003-0993-3
editor:
- first_name: Jean
full_name: Zambrini, Jean-Claude
last_name: Zambrini
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0305025
month: '03'
oa: 1
publication_status: published
publisher: World Scientific Publishing
publist_id: '4592'
quality_controlled: 0
status: public
title: One-dimensional behavior of dilute, trapped Bose gases in traps
type: conference
year: '2006'
...
---
_id: '2363'
abstract:
- lang: eng
text: ' We prove that the Gross-Pitaevskii equation correctly describes the
ground state energy and corresponding one-particle density matrix of rotating,
dilute, trapped Bose gases with repulsive two-body interactions. We also show
that there is 100% Bose-Einstein condensation. While a proof that the GP equation
correctly describes non-rotating or slowly rotating gases was known for some time,
the rapidly rotating case was unclear because the Bose (i.e., symmetric) ground
state is not the lowest eigenstate of the Hamiltonian in this case. We have been
able to overcome this difficulty with the aid of coherent states. Our proof also
conceptually simplifies the previous proof for the slowly rotating case. In the
case of axially symmetric traps, our results show that the appearance of quantized
vortices causes spontaneous symmetry breaking in the ground state. '
author:
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Lieb É, Seiringer R. Derivation of the Gross-Pitaevskii equation for rotating
Bose gases. Communications in Mathematical Physics. 2006;264(2):505-537.
doi:10.1007/s00220-006-1524-9
apa: Lieb, É., & Seiringer, R. (2006). Derivation of the Gross-Pitaevskii equation
for rotating Bose gases. Communications in Mathematical Physics. Springer.
https://doi.org/10.1007/s00220-006-1524-9
chicago: Lieb, Élliott, and Robert Seiringer. “Derivation of the Gross-Pitaevskii
Equation for Rotating Bose Gases.” Communications in Mathematical Physics.
Springer, 2006. https://doi.org/10.1007/s00220-006-1524-9.
ieee: É. Lieb and R. Seiringer, “Derivation of the Gross-Pitaevskii equation for
rotating Bose gases,” Communications in Mathematical Physics, vol. 264,
no. 2. Springer, pp. 505–537, 2006.
ista: Lieb É, Seiringer R. 2006. Derivation of the Gross-Pitaevskii equation for
rotating Bose gases. Communications in Mathematical Physics. 264(2), 505–537.
mla: Lieb, Élliott, and Robert Seiringer. “Derivation of the Gross-Pitaevskii Equation
for Rotating Bose Gases.” Communications in Mathematical Physics, vol.
264, no. 2, Springer, 2006, pp. 505–37, doi:10.1007/s00220-006-1524-9.
short: É. Lieb, R. Seiringer, Communications in Mathematical Physics 264 (2006)
505–537.
date_created: 2018-12-11T11:57:13Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2020-07-14T12:45:40Z
day: '01'
doi: 10.1007/s00220-006-1524-9
extern: 1
intvolume: ' 264'
issue: '2'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0504042
month: '01'
oa: 1
page: 505 - 537
publication: Communications in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4561'
quality_controlled: 0
status: public
title: Derivation of the Gross-Pitaevskii equation for rotating Bose gases
type: review
volume: 264
year: '2006'
...
---
_id: '2364'
abstract:
- lang: eng
text: We present an inequality that gives a lower bound on the expectation value
of certain two-body interaction potentials in a general state on Fock space in
terms of the corresponding expectation value for thermal equilibrium states of
non-interacting systems and the difference in the free energy. This bound can
be viewed as a rigorous version of first-order perturbation theory for many-body
systems at positive temperature. As an application, we give a proof of the first
two terms in a high density (and high temperature) expansion of the free energy
of jellium with Coulomb interactions, both in the fermionic and bosonic case.
For bosons, our method works above the transition temperature (for the non-interacting
gas) for Bose-Einstein condensation.
author:
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Seiringer R. A correlation estimate for quantum many-body systems at positive
temperature. Reviews in Mathematical Physics. 2006;18(3):233-253. doi:10.1142/S0129055X06002632
apa: Seiringer, R. (2006). A correlation estimate for quantum many-body systems
at positive temperature. Reviews in Mathematical Physics. World Scientific
Publishing. https://doi.org/10.1142/S0129055X06002632
chicago: Seiringer, Robert. “A Correlation Estimate for Quantum Many-Body Systems
at Positive Temperature.” Reviews in Mathematical Physics. World Scientific
Publishing, 2006. https://doi.org/10.1142/S0129055X06002632.
ieee: R. Seiringer, “A correlation estimate for quantum many-body systems at positive
temperature,” Reviews in Mathematical Physics, vol. 18, no. 3. World Scientific
Publishing, pp. 233–253, 2006.
ista: Seiringer R. 2006. A correlation estimate for quantum many-body systems at
positive temperature. Reviews in Mathematical Physics. 18(3), 233–253.
mla: Seiringer, Robert. “A Correlation Estimate for Quantum Many-Body Systems at
Positive Temperature.” Reviews in Mathematical Physics, vol. 18, no. 3,
World Scientific Publishing, 2006, pp. 233–53, doi:10.1142/S0129055X06002632.
short: R. Seiringer, Reviews in Mathematical Physics 18 (2006) 233–253.
date_created: 2018-12-11T11:57:14Z
date_published: 2006-04-01T00:00:00Z
date_updated: 2021-01-12T06:57:02Z
day: '01'
doi: 10.1142/S0129055X06002632
extern: 1
intvolume: ' 18'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0601051
month: '04'
oa: 1
page: 233 - 253
publication: Reviews in Mathematical Physics
publication_status: published
publisher: World Scientific Publishing
publist_id: '4562'
quality_controlled: 0
status: public
title: A correlation estimate for quantum many-body systems at positive temperature
type: journal_article
volume: 18
year: '2006'
...
---
_id: '2365'
abstract:
- lang: eng
text: We consider a gas of fermions with non-zero spin at temperature T and chemical
potential μ. We show that if the range of the interparticle interaction is small
compared to the mean particle distance, the thermodynamic pressure differs to
leading order from the corresponding expression for non-interacting particles
by a term proportional to the scattering length of the interparticle interaction.
This is true for any repulsive interaction, including hard cores. The result is
uniform in the temperature as long as T is of the same order as the Fermi temperature,
or smaller.
author:
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Seiringer R. The thermodynamic pressure of a dilute fermi gas. Communications
in Mathematical Physics. 2006;261(3):729-757. doi:10.1007/s00220-005-1433-3
apa: Seiringer, R. (2006). The thermodynamic pressure of a dilute fermi gas. Communications
in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-005-1433-3
chicago: Seiringer, Robert. “The Thermodynamic Pressure of a Dilute Fermi Gas.”
Communications in Mathematical Physics. Springer, 2006. https://doi.org/10.1007/s00220-005-1433-3.
ieee: R. Seiringer, “The thermodynamic pressure of a dilute fermi gas,” Communications
in Mathematical Physics, vol. 261, no. 3. Springer, pp. 729–757, 2006.
ista: Seiringer R. 2006. The thermodynamic pressure of a dilute fermi gas. Communications
in Mathematical Physics. 261(3), 729–757.
mla: Seiringer, Robert. “The Thermodynamic Pressure of a Dilute Fermi Gas.” Communications
in Mathematical Physics, vol. 261, no. 3, Springer, 2006, pp. 729–57, doi:10.1007/s00220-005-1433-3.
short: R. Seiringer, Communications in Mathematical Physics 261 (2006) 729–757.
date_created: 2018-12-11T11:57:14Z
date_published: 2006-02-01T00:00:00Z
date_updated: 2021-01-12T06:57:02Z
day: '01'
doi: 10.1007/s00220-005-1433-3
extern: 1
intvolume: ' 261'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0412086
month: '02'
oa: 1
page: 729 - 757
publication: Communications in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4563'
quality_controlled: 0
status: public
title: The thermodynamic pressure of a dilute fermi gas
type: journal_article
volume: 261
year: '2006'
...
---
_id: '2366'
abstract:
- lang: eng
text: Inequalities are derived for power sums of the real part and the modulus of
the eigenvalues of a Schrödinger operator with a complex-valued potential.
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Ari
full_name: Laptev, Ari
last_name: Laptev
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Frank R, Laptev A, Lieb É, Seiringer R. Lieb-Thirring inequalities for Schrödinger
operators with complex-valued potentials. Letters in Mathematical Physics.
2006;77(3):309-316. doi:10.1007/s11005-006-0095-1
apa: Frank, R., Laptev, A., Lieb, É., & Seiringer, R. (2006). Lieb-Thirring
inequalities for Schrödinger operators with complex-valued potentials. Letters
in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-006-0095-1
chicago: Frank, Rupert, Ari Laptev, Élliott Lieb, and Robert Seiringer. “Lieb-Thirring
Inequalities for Schrödinger Operators with Complex-Valued Potentials.” Letters
in Mathematical Physics. Springer, 2006. https://doi.org/10.1007/s11005-006-0095-1.
ieee: R. Frank, A. Laptev, É. Lieb, and R. Seiringer, “Lieb-Thirring inequalities
for Schrödinger operators with complex-valued potentials,” Letters in Mathematical
Physics, vol. 77, no. 3. Springer, pp. 309–316, 2006.
ista: Frank R, Laptev A, Lieb É, Seiringer R. 2006. Lieb-Thirring inequalities for
Schrödinger operators with complex-valued potentials. Letters in Mathematical
Physics. 77(3), 309–316.
mla: Frank, Rupert, et al. “Lieb-Thirring Inequalities for Schrödinger Operators
with Complex-Valued Potentials.” Letters in Mathematical Physics, vol.
77, no. 3, Springer, 2006, pp. 309–16, doi:10.1007/s11005-006-0095-1.
short: R. Frank, A. Laptev, É. Lieb, R. Seiringer, Letters in Mathematical Physics
77 (2006) 309–316.
date_created: 2018-12-11T11:57:15Z
date_published: 2006-09-01T00:00:00Z
date_updated: 2021-01-12T06:57:03Z
day: '01'
doi: 10.1007/s11005-006-0095-1
extern: 1
intvolume: ' 77'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math-ph/0605017
month: '09'
oa: 1
page: 309 - 316
publication: Letters in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4560'
quality_controlled: 0
status: public
title: Lieb-Thirring inequalities for Schrödinger operators with complex-valued potentials
type: journal_article
volume: 77
year: '2006'
...
---
_id: '2368'
abstract:
- lang: eng
text: The recent experimental success in creating Bose-Einstein condensates of alkali
atoms, honored by the Nobel prize awards in 2001 [1,5], led to renewed interest
in the mathematical description of interacting Bose gases.
alternative_title:
- LNP
author:
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: 'Seiringer R. Dilute, trapped Bose gases and Bose-Einstein condensation. In:
Dereziński J, Siedentop H, eds. Large Coulomb Systems. Vol 695. Springer;
2006:249-274. doi:10.1007/3-540-32579-4_6'
apa: Seiringer, R. (2006). Dilute, trapped Bose gases and Bose-Einstein condensation.
In J. Dereziński & H. Siedentop (Eds.), Large Coulomb Systems (Vol.
695, pp. 249–274). Springer. https://doi.org/10.1007/3-540-32579-4_6
chicago: Seiringer, Robert. “Dilute, Trapped Bose Gases and Bose-Einstein Condensation.”
In Large Coulomb Systems, edited by Jan Dereziński and Heinz Siedentop,
695:249–74. Springer, 2006. https://doi.org/10.1007/3-540-32579-4_6.
ieee: R. Seiringer, “Dilute, trapped Bose gases and Bose-Einstein condensation,”
in Large Coulomb Systems, vol. 695, J. Dereziński and H. Siedentop, Eds.
Springer, 2006, pp. 249–274.
ista: 'Seiringer R. 2006.Dilute, trapped Bose gases and Bose-Einstein condensation.
In: Large Coulomb Systems. LNP, vol. 695, 249–274.'
mla: Seiringer, Robert. “Dilute, Trapped Bose Gases and Bose-Einstein Condensation.”
Large Coulomb Systems, edited by Jan Dereziński and Heinz Siedentop, vol.
695, Springer, 2006, pp. 249–74, doi:10.1007/3-540-32579-4_6.
short: R. Seiringer, in:, J. Dereziński, H. Siedentop (Eds.), Large Coulomb Systems,
Springer, 2006, pp. 249–274.
date_created: 2018-12-11T11:57:15Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:03Z
day: '01'
doi: 10.1007/3-540-32579-4_6
editor:
- first_name: Jan
full_name: Dereziński, Jan
last_name: Dereziński
- first_name: Heinz
full_name: Siedentop, Heinz
last_name: Siedentop
extern: 1
intvolume: ' 695'
month: '01'
page: 249 - 274
publication: Large Coulomb Systems
publication_status: published
publisher: Springer
publist_id: '4558'
quality_controlled: 0
status: public
title: Dilute, trapped Bose gases and Bose-Einstein condensation
type: book_chapter
volume: 695
year: '2006'
...
---
_id: '2369'
abstract:
- lang: eng
text: One of the most remarkable recent developments in the study of ultracold Bose
gases is the observation of a reversible transition from a Bose Einstein condensate
to a state composed of localized atoms as the strength of a periodic, optical
trapping potential is varied. In [1] a model of this phenomenon has been analyzed
rigorously. The gas is a hard core lattice gas and the optical lattice is modeled
by a periodic potential of strength λ. For small λ and temperature Bose- Einstein
condensation (BEC) is proved to occur, while at large λ BEC disappears, even in
the ground state, which is a Mott-insulator state with a characteristic gap. The
inter-particle interaction is essential for this effect. This contribution gives
a pedagogical survey of these results.
alternative_title:
- LNP
author:
- first_name: Michael
full_name: Aizenman, Michael
last_name: Aizenman
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
- first_name: Jakob
full_name: Yngvason, Jakob
last_name: Yngvason
citation:
ama: 'Aizenman M, Lieb É, Seiringer R, Solovej J, Yngvason J. Bose-Einstein condensation
as a quantum phase transition in an optical lattice. In: Asch J, Joye A, eds.
Mathematical Physics of Quantum Mechanics. Vol 690. Springer; 2006:199-215.
doi:10.1007/b11573432'
apa: Aizenman, M., Lieb, É., Seiringer, R., Solovej, J., & Yngvason, J. (2006).
Bose-Einstein condensation as a quantum phase transition in an optical lattice.
In J. Asch & A. Joye (Eds.), Mathematical Physics of Quantum Mechanics
(Vol. 690, pp. 199–215). Springer. https://doi.org/10.1007/b11573432
chicago: Aizenman, Michael, Élliott Lieb, Robert Seiringer, Jan Solovej, and Jakob
Yngvason. “Bose-Einstein Condensation as a Quantum Phase Transition in an Optical
Lattice.” In Mathematical Physics of Quantum Mechanics, edited by Joachim
Asch and Alain Joye, 690:199–215. Springer, 2006. https://doi.org/10.1007/b11573432.
ieee: M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, and J. Yngvason, “Bose-Einstein
condensation as a quantum phase transition in an optical lattice,” in Mathematical
Physics of Quantum Mechanics, vol. 690, J. Asch and A. Joye, Eds. Springer,
2006, pp. 199–215.
ista: 'Aizenman M, Lieb É, Seiringer R, Solovej J, Yngvason J. 2006.Bose-Einstein
condensation as a quantum phase transition in an optical lattice. In: Mathematical
Physics of Quantum Mechanics. LNP, vol. 690, 199–215.'
mla: Aizenman, Michael, et al. “Bose-Einstein Condensation as a Quantum Phase Transition
in an Optical Lattice.” Mathematical Physics of Quantum Mechanics, edited
by Joachim Asch and Alain Joye, vol. 690, Springer, 2006, pp. 199–215, doi:10.1007/b11573432.
short: M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, J. Yngvason, in:, J. Asch,
A. Joye (Eds.), Mathematical Physics of Quantum Mechanics, Springer, 2006, pp.
199–215.
date_created: 2018-12-11T11:57:16Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:04Z
day: '01'
doi: 10.1007/b11573432
editor:
- first_name: Joachim
full_name: Asch, Joachim
last_name: Asch
- first_name: Alain
full_name: Joye, Alain
last_name: Joye
extern: 1
intvolume: ' 690'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/cond-mat/0412034
month: '01'
oa: 1
page: 199 - 215
publication: Mathematical Physics of Quantum Mechanics
publication_status: published
publisher: Springer
publist_id: '4559'
quality_controlled: 0
status: public
title: Bose-Einstein condensation as a quantum phase transition in an optical lattice
type: book_chapter
volume: 690
year: '2006'
...
---
_id: '2416'
alternative_title:
- Algorithms and Combinatorics
author:
- first_name: Jørgen
full_name: Bang-Jensen, Jørgen
last_name: Bang Jensen
- first_name: Bruce
full_name: Reed, Bruce
last_name: Reed
- first_name: Bruce
full_name: Schacht, Bruce
last_name: Schacht
- first_name: Robert
full_name: Šámal, Robert
last_name: Šámal
- first_name: Bjarne
full_name: Toft, Bjarne
last_name: Toft
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: 'Bang Jensen J, Reed B, Schacht B, Šámal R, Toft B, Wagner U. On six problems
posed by Jarik Nešetřil. In: Topics in Discrete Mathematics. Vol 26. Springer;
2006:613-627. doi:10.1007/3-540-33700-8_30'
apa: Bang Jensen, J., Reed, B., Schacht, B., Šámal, R., Toft, B., & Wagner,
U. (2006). On six problems posed by Jarik Nešetřil. In Topics in Discrete Mathematics
(Vol. 26, pp. 613–627). Springer. https://doi.org/10.1007/3-540-33700-8_30
chicago: Bang Jensen, Jørgen, Bruce Reed, Bruce Schacht, Robert Šámal, Bjarne Toft,
and Uli Wagner. “On Six Problems Posed by Jarik Nešetřil.” In Topics in Discrete
Mathematics, 26:613–27. Springer, 2006. https://doi.org/10.1007/3-540-33700-8_30.
ieee: J. Bang Jensen, B. Reed, B. Schacht, R. Šámal, B. Toft, and U. Wagner, “On
six problems posed by Jarik Nešetřil,” in Topics in Discrete Mathematics,
vol. 26, Springer, 2006, pp. 613–627.
ista: 'Bang Jensen J, Reed B, Schacht B, Šámal R, Toft B, Wagner U. 2006.On six
problems posed by Jarik Nešetřil. In: Topics in Discrete Mathematics. Algorithms
and Combinatorics, vol. 26, 613–627.'
mla: Bang Jensen, Jørgen, et al. “On Six Problems Posed by Jarik Nešetřil.” Topics
in Discrete Mathematics, vol. 26, Springer, 2006, pp. 613–27, doi:10.1007/3-540-33700-8_30.
short: J. Bang Jensen, B. Reed, B. Schacht, R. Šámal, B. Toft, U. Wagner, in:, Topics
in Discrete Mathematics, Springer, 2006, pp. 613–627.
date_created: 2018-12-11T11:57:32Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:21Z
day: '01'
doi: 10.1007/3-540-33700-8_30
extern: 1
intvolume: ' 26'
month: '01'
page: 613 - 627
publication: Topics in Discrete Mathematics
publication_status: published
publisher: Springer
publist_id: '4509'
quality_controlled: 0
status: public
title: On six problems posed by Jarik Nešetřil
type: book_chapter
volume: 26
year: '2006'
...
---
_id: '2430'
abstract:
- lang: eng
text: We consider an online version of the conflict-free coloring of a set of points
on the line, where each newly inserted point must be assigned a color upon insertion,
and at all times the coloring has to be conflict-free, in the sense that in every
interval I there is a color that appears exactly once in I. We present deterministic
and randomized algorithms for achieving this goal, and analyze their performance,
that is, the maximum number of colors that they need to use, as a function of
the number n of inserted points. We first show that a natural and simple (deterministic)
approach may perform rather poorly, requiring Ω(√̃) colors in the worst case.
We then derive two efficient variants of this simple algorithm. The first is deterministic
and uses O(log 2 n) colors, and the second is randomized and uses O(log n) colors
with high probability. We also show that the O(log 2 n) bound on the number of
colors used by our deterministic algorithm is tight on the worst case. We also
analyze the performance of the simplest proposed algorithm when the points are
inserted in a random order and present an incomplete analysis that indicates that,
with high probability, it uses only O(log n) colors. Finally, we show that in
the extension of this problem to two dimensions, where the relevant ranges are
disks, n colors may be required in the worst case.
author:
- first_name: Ke
full_name: Chent, Ke
last_name: Chent
- first_name: Amos
full_name: Fiat, Amos
last_name: Fiat
- first_name: Haim
full_name: Kaplan, Haim
last_name: Kaplan
- first_name: Meital
full_name: Levy, Meital B
last_name: Levy
- first_name: Jiří
full_name: Matoušek, Jiří
last_name: Matoušek
- first_name: Elchanan
full_name: Mossel, Elchanan
last_name: Mossel
- first_name: János
full_name: Pach, János
last_name: Pach
- first_name: Micha
full_name: Sharir, Micha
last_name: Sharir
- first_name: Shakhar
full_name: Smorodinsky, Shakhar
last_name: Smorodinsky
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
- first_name: Emo
full_name: Welzl, Emo
last_name: Welzl
citation:
ama: Chent K, Fiat A, Kaplan H, et al. Online conflict-free coloring for intervals.
SIAM Journal on Computing. 2006;36(5):1342-1359. doi:10.1137/S0097539704446682
apa: Chent, K., Fiat, A., Kaplan, H., Levy, M., Matoušek, J., Mossel, E., … Welzl,
E. (2006). Online conflict-free coloring for intervals. SIAM Journal on Computing.
SIAM. https://doi.org/10.1137/S0097539704446682
chicago: Chent, Ke, Amos Fiat, Haim Kaplan, Meital Levy, Jiří Matoušek, Elchanan
Mossel, János Pach, et al. “Online Conflict-Free Coloring for Intervals.” SIAM
Journal on Computing. SIAM, 2006. https://doi.org/10.1137/S0097539704446682.
ieee: K. Chent et al., “Online conflict-free coloring for intervals,” SIAM
Journal on Computing, vol. 36, no. 5. SIAM, pp. 1342–1359, 2006.
ista: Chent K, Fiat A, Kaplan H, Levy M, Matoušek J, Mossel E, Pach J, Sharir M,
Smorodinsky S, Wagner U, Welzl E. 2006. Online conflict-free coloring for intervals.
SIAM Journal on Computing. 36(5), 1342–1359.
mla: Chent, Ke, et al. “Online Conflict-Free Coloring for Intervals.” SIAM Journal
on Computing, vol. 36, no. 5, SIAM, 2006, pp. 1342–59, doi:10.1137/S0097539704446682.
short: K. Chent, A. Fiat, H. Kaplan, M. Levy, J. Matoušek, E. Mossel, J. Pach, M.
Sharir, S. Smorodinsky, U. Wagner, E. Welzl, SIAM Journal on Computing 36 (2006)
1342–1359.
date_created: 2018-12-11T11:57:37Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:26Z
day: '01'
doi: 10.1137/S0097539704446682
extern: 1
intvolume: ' 36'
issue: '5'
month: '01'
page: 1342 - 1359
publication: SIAM Journal on Computing
publication_status: published
publisher: SIAM
publist_id: '4490'
quality_controlled: 0
status: public
title: Online conflict-free coloring for intervals
type: journal_article
volume: 36
year: '2006'
...
---
_id: '2431'
abstract:
- lang: eng
text: We prove an upper bound, tight up to a factor of 2, for the number of vertices
of level at most t in an arrangement of n halfspaces in R , for arbitrary n and
d (in particular, the dimension d is not considered constant). This partially
settles a conjecture of Eckhoff, Linhart, and Welzl. Up to the factor of 2, the
result generalizes McMullen's Upper Bound Theorem for convex polytopes (the case
ℓ = O) and extends a theorem of Linhart for the case d ≤ 4. Moreover, the bound
sharpens asymptotic estimates obtained by Clarkson and Shor. The proof is based
on the h-matrix of the arrangement (a generalization, introduced by Mulmuley,
of the h-vector of a convex polytope). We show that bounding appropriate sums
of entries of this matrix reduces to a lemma about quadrupels of sets with certain
intersection properties, and we prove this lemma, up to a factor of 2, using tools
from multilinear algebra. This extends an approach of Alon and Kalai, who used
linear algebra methods for an alternative proof of the classical Upper Bound Theorem.
The bounds for the entries of the h-matrix also imply bounds for the number of
i-dimensional faces, i > 0, at level at most ℓ. Furthermore, we discuss a connection
with crossing numbers of graphs that was one of the main motivations for investigating
exact bounds that are valid for arbitrary dimensions.
alternative_title:
- IEEE Conference Proceedings
author:
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: 'Wagner U. On a geometric generalization of the Upper Bound Theorem. In: IEEE;
2006:635-645. doi:10.1109/FOCS.2006.53'
apa: 'Wagner, U. (2006). On a geometric generalization of the Upper Bound Theorem
(pp. 635–645). Presented at the FOCS: Foundations of Computer Science, IEEE. https://doi.org/10.1109/FOCS.2006.53'
chicago: Wagner, Uli. “On a Geometric Generalization of the Upper Bound Theorem,”
635–45. IEEE, 2006. https://doi.org/10.1109/FOCS.2006.53.
ieee: 'U. Wagner, “On a geometric generalization of the Upper Bound Theorem,” presented
at the FOCS: Foundations of Computer Science, 2006, pp. 635–645.'
ista: 'Wagner U. 2006. On a geometric generalization of the Upper Bound Theorem.
FOCS: Foundations of Computer Science, IEEE Conference Proceedings, , 635–645.'
mla: Wagner, Uli. On a Geometric Generalization of the Upper Bound Theorem.
IEEE, 2006, pp. 635–45, doi:10.1109/FOCS.2006.53.
short: U. Wagner, in:, IEEE, 2006, pp. 635–645.
conference:
name: 'FOCS: Foundations of Computer Science'
date_created: 2018-12-11T11:57:37Z
date_published: 2006-06-08T00:00:00Z
date_updated: 2021-01-12T06:57:27Z
day: '08'
doi: 10.1109/FOCS.2006.53
extern: 1
month: '06'
page: 635 - 645
publication_status: published
publisher: IEEE
publist_id: '4489'
quality_controlled: 0
status: public
title: On a geometric generalization of the Upper Bound Theorem
type: conference
year: '2006'
...
---
_id: '2429'
abstract:
- lang: eng
text: 'We show, with an elementary proof, that the number of halving simplices in
a set of n points in 4 in general position is O(n4-2/45). This improves the previous
bound of O(n4-1/134). Our main new ingredient is a bound on the maximum number
of halving simplices intersecting a fixed 2-plane. '
author:
- first_name: Jiří
full_name: Matoušek, Jiří
last_name: Matoušek
- first_name: Micha
full_name: Sharir, Micha
last_name: Sharir
- first_name: Shakhar
full_name: Smorodinsky, Shakhar
last_name: Smorodinsky
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: Matoušek J, Sharir M, Smorodinsky S, Wagner U. K-sets in four dimensions. Discrete
& Computational Geometry. 2006;35(2):177-191. doi:10.1007/s00454-005-1200-4
apa: Matoušek, J., Sharir, M., Smorodinsky, S., & Wagner, U. (2006). K-sets
in four dimensions. Discrete & Computational Geometry. Springer. https://doi.org/10.1007/s00454-005-1200-4
chicago: Matoušek, Jiří, Micha Sharir, Shakhar Smorodinsky, and Uli Wagner. “K-Sets
in Four Dimensions.” Discrete & Computational Geometry. Springer, 2006.
https://doi.org/10.1007/s00454-005-1200-4.
ieee: J. Matoušek, M. Sharir, S. Smorodinsky, and U. Wagner, “K-sets in four dimensions,”
Discrete & Computational Geometry, vol. 35, no. 2. Springer, pp. 177–191,
2006.
ista: Matoušek J, Sharir M, Smorodinsky S, Wagner U. 2006. K-sets in four dimensions.
Discrete & Computational Geometry. 35(2), 177–191.
mla: Matoušek, Jiří, et al. “K-Sets in Four Dimensions.” Discrete & Computational
Geometry, vol. 35, no. 2, Springer, 2006, pp. 177–91, doi:10.1007/s00454-005-1200-4.
short: J. Matoušek, M. Sharir, S. Smorodinsky, U. Wagner, Discrete & Computational
Geometry 35 (2006) 177–191.
date_created: 2018-12-11T11:57:37Z
date_published: 2006-02-01T00:00:00Z
date_updated: 2021-01-12T06:57:26Z
day: '01'
doi: 10.1007/s00454-005-1200-4
extern: 1
intvolume: ' 35'
issue: '2'
month: '02'
page: 177 - 191
publication: Discrete & Computational Geometry
publication_status: published
publisher: Springer
publist_id: '4495'
quality_controlled: 0
status: public
title: K-sets in four dimensions
type: journal_article
volume: 35
year: '2006'
...
---
_id: '2659'
abstract:
- lang: eng
text: Transmembrane AMPA receptor regulatory proteins (TARPs), including stargazin/γ-2,
are associated with AMPA receptors and participate in their surface delivery and
anchoring at the postsynaptic membrane. TARPs may also act as a positive modulator
of the AMPA receptor ion channel function; however, little is known about other
TARP members except for stargazin/γ-2. We examined the synaptic localization of
stargazin/γ-2 and γ-8 by immunoelectron microscopy and biochemical analysis. The
analysis of sodium dodecyl sulfate-digested freeze-fracture replica labeling revealed
that stargazin/γ-2 was concentrated in the postsynaptic area, whereas γ-8 was
distributed both in synaptic and extra-synaptic plasma membranes of the hippocampal
neuron. When a synaptic plasma membrane-enriched brain fraction was treated with
Triton X-100 and separated by sucrose density gradient ultracentrifugation, a
large proportion of NMDA receptor and stargazin/γ-2 was accumulated in raft-enriched
fractions, whereas AMPA receptor and γ-8 were distributed in both the raft-enriched
fractions and other Triton-insoluble fractions. Phosphorylation of stargazin/γ-2
and γ-8 was regulated by different sets of kinases and phosphatases in cultured
cortical neurons. These results suggested that stargazin/γ-2 and γ-8 have distinct
roles in postsynaptic membranes under the regulation of different intracellular
signaling pathways.
author:
- first_name: Mihoko
full_name: Inamura, Mihoko
last_name: Inamura
- first_name: Makoto
full_name: Itakura, Makoto
last_name: Itakura
- first_name: Hirotsugu
full_name: Okamoto, Hirotsugu
last_name: Okamoto
- first_name: Sumio
full_name: Hoka, Sumio
last_name: Hoka
- first_name: Akira
full_name: Mizoguchi, Akira
last_name: Mizoguchi
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Saori
full_name: Yamamori, Saori
last_name: Yamamori
- first_name: Masami
full_name: Takahashi, Masami
last_name: Takahashi
citation:
ama: Inamura M, Itakura M, Okamoto H, et al. Differential localization and regulation
of stargazin-like protein, γ-8 and stargazin in the plasma membrane of hippocampal
and cortical neurons. Neuroscience Research. 2006;55(1):45-53. doi:10.1016/j.neures.2006.01.004
apa: Inamura, M., Itakura, M., Okamoto, H., Hoka, S., Mizoguchi, A., Fukazawa, Y.,
… Takahashi, M. (2006). Differential localization and regulation of stargazin-like
protein, γ-8 and stargazin in the plasma membrane of hippocampal and cortical
neurons. Neuroscience Research. Elsevier. https://doi.org/10.1016/j.neures.2006.01.004
chicago: Inamura, Mihoko, Makoto Itakura, Hirotsugu Okamoto, Sumio Hoka, Akira Mizoguchi,
Yugo Fukazawa, Ryuichi Shigemoto, Saori Yamamori, and Masami Takahashi. “ Differential
Localization and Regulation of Stargazin-like Protein, γ-8 and Stargazin in the
Plasma Membrane of Hippocampal and Cortical Neurons.” Neuroscience Research.
Elsevier, 2006. https://doi.org/10.1016/j.neures.2006.01.004.
ieee: M. Inamura et al., “ Differential localization and regulation of stargazin-like
protein, γ-8 and stargazin in the plasma membrane of hippocampal and cortical
neurons,” Neuroscience Research, vol. 55, no. 1. Elsevier, pp. 45–53, 2006.
ista: Inamura M, Itakura M, Okamoto H, Hoka S, Mizoguchi A, Fukazawa Y, Shigemoto
R, Yamamori S, Takahashi M. 2006. Differential localization and regulation of
stargazin-like protein, γ-8 and stargazin in the plasma membrane of hippocampal
and cortical neurons. Neuroscience Research. 55(1), 45–53.
mla: Inamura, Mihoko, et al. “ Differential Localization and Regulation of Stargazin-like
Protein, γ-8 and Stargazin in the Plasma Membrane of Hippocampal and Cortical
Neurons.” Neuroscience Research, vol. 55, no. 1, Elsevier, 2006, pp. 45–53,
doi:10.1016/j.neures.2006.01.004.
short: M. Inamura, M. Itakura, H. Okamoto, S. Hoka, A. Mizoguchi, Y. Fukazawa, R.
Shigemoto, S. Yamamori, M. Takahashi, Neuroscience Research 55 (2006) 45–53.
date_created: 2018-12-11T11:58:55Z
date_published: 2006-05-01T00:00:00Z
date_updated: 2021-01-12T06:58:52Z
day: '01'
doi: 10.1016/j.neures.2006.01.004
extern: 1
intvolume: ' 55'
issue: '1'
month: '05'
page: 45 - 53
publication: Neuroscience Research
publication_status: published
publisher: Elsevier
publist_id: '4238'
quality_controlled: 0
status: public
title: ' Differential localization and regulation of stargazin-like protein, γ-8 and
stargazin in the plasma membrane of hippocampal and cortical neurons'
type: journal_article
volume: 55
year: '2006'
...
---
_id: '2657'
abstract:
- lang: eng
text: The highest densities of the two metabotropic GABA subunits, GABA B1 and GABAB2,
have been reported as occurring around the glutamatergic synapses between Purkinje
cell spines and parallel fibre varicosities. In order to determine how this distribution
is achieved during development, we investigated the expression pattern and the
cellular and subcellular localization of the GABAB1 and GABAB2 subunits in the
rat cerebellum during postnatal development. At the light microscopic level, immunoreactivity
for the GABAB1 and GABAB2 subunits was very prominent in the developing molecular
layer, especially in Purkinje cells. Using double immunofluorescence, we demonstrated
that GABAB1 was transiently expressed in glial cells. At the electron microscopic
level, immunoreactivity for GABAB receptors was always detected both pre- and
postsynaptically. Presynaptically, GABAB1 and GABAB2 were localized in the extrasynaptic
membrane of parallel fibres at all ages, and only rarely in GABAergic axons. Postsynaptically,
GABAB receptors were localized to the extrasynaptic and perisynaptic plasma membrane
of Purkinje cell dendrites and spines throughout development. Quantitative analysis
and three-dimensional reconstructions further revealed a progressive developmental
movement of the GABAB1 subunit on the surface of Purkinje cells from dendritic
shafts to its final destination, the dendritic spines. Together, these results
indicate that GABAB receptors undergo dynamic regulation during cerebellar development
in association with the establishment and maturation of glutamatergic synapses
to Purkinje cells.
author:
- first_name: Rafael
full_name: Luján, Rafael
last_name: Luján
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
citation:
ama: Luján R, Shigemoto R. Localization of metabotropic GABA receptor subunits GABAB1
and GABAB2 relative to synaptic sites in the rat developing cerebellum. European
Journal of Neuroscience. 2006;23(6):1479-1490. doi:10.1111/j.1460-9568.2006.04669.x
apa: Luján, R., & Shigemoto, R. (2006). Localization of metabotropic GABA receptor
subunits GABAB1 and GABAB2 relative to synaptic sites in the rat developing cerebellum.
European Journal of Neuroscience. Wiley-Blackwell. https://doi.org/10.1111/j.1460-9568.2006.04669.x
chicago: Luján, Rafael, and Ryuichi Shigemoto. “Localization of Metabotropic GABA
Receptor Subunits GABAB1 and GABAB2 Relative to Synaptic Sites in the Rat Developing
Cerebellum.” European Journal of Neuroscience. Wiley-Blackwell, 2006. https://doi.org/10.1111/j.1460-9568.2006.04669.x.
ieee: R. Luján and R. Shigemoto, “Localization of metabotropic GABA receptor subunits
GABAB1 and GABAB2 relative to synaptic sites in the rat developing cerebellum,”
European Journal of Neuroscience, vol. 23, no. 6. Wiley-Blackwell, pp.
1479–1490, 2006.
ista: Luján R, Shigemoto R. 2006. Localization of metabotropic GABA receptor subunits
GABAB1 and GABAB2 relative to synaptic sites in the rat developing cerebellum.
European Journal of Neuroscience. 23(6), 1479–1490.
mla: Luján, Rafael, and Ryuichi Shigemoto. “Localization of Metabotropic GABA Receptor
Subunits GABAB1 and GABAB2 Relative to Synaptic Sites in the Rat Developing Cerebellum.”
European Journal of Neuroscience, vol. 23, no. 6, Wiley-Blackwell, 2006,
pp. 1479–90, doi:10.1111/j.1460-9568.2006.04669.x.
short: R. Luján, R. Shigemoto, European Journal of Neuroscience 23 (2006) 1479–1490.
date_created: 2018-12-11T11:58:54Z
date_published: 2006-03-01T00:00:00Z
date_updated: 2021-01-12T06:58:52Z
day: '01'
doi: 10.1111/j.1460-9568.2006.04669.x
extern: 1
intvolume: ' 23'
issue: '6'
month: '03'
page: 1479 - 1490
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4239'
quality_controlled: 0
status: public
title: Localization of metabotropic GABA receptor subunits GABAB1 and GABAB2 relative
to synaptic sites in the rat developing cerebellum
type: journal_article
volume: 23
year: '2006'
...
---
_id: '2663'
abstract:
- lang: eng
text: The rocker mice are hereditary ataxic mutants that carry a point mutation
in the gene encoding the CaV2.1 (P/Q-type) Ca2+ channel α1 subunit, and show the
mildest symptoms among the reported CaV2.1 mutant mice. We studied the basic characteristics
of the rocker mutant Ca2+ channel and their impacts on excitatory synaptic transmission
in cerebellar Purkinje cells (PCs). In acutely dissociated PC somas, the rocker
mutant channel showed a moderate reduction in Ca2+ channel current density, whereas
its kinetics and voltage dependency of gating remained nearly normal. Despite
the small changes in channel function, synaptic transmission in the parallel fiber
(PF)-PC synapses was severely impaired. The climbing fiber inputs onto PCs showed
a moderate impairment but could elicit normal complex spikes. Presynaptic function
of the PF-PC synapses, however, was unexpectedly almost normal in terms of paired-pulse
facilitation, sensitivity to extracellular Ca2+ concentration and glutamate concentration
in synaptic clefts. Electron microscopic analyses including freeze-fracture replica
labeling revealed that both the number and density of postsynaptic α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid (AMPA) receptors substantially decreased without gross structural changes
of the PF-PC synapses. We also observed an abnormal arborization of PC dendrites
in young adult rocker mice (∼ 1 month old). These lines of evidence suggest that
even a moderate dysfunction of CaV2.1 Ca2+ channel can cause substantial changes
in postsynaptic molecular composition of the PF-PC synapses and dendritic structure
of PCs.
author:
- first_name: Takashi
full_name: Kodama, Takashi
last_name: Kodama
- first_name: Yuko
full_name: Itsukaichi-Nishida, Yuko
last_name: Itsukaichi Nishida
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Minoru
full_name: Wakamori, Minoru
last_name: Wakamori
- first_name: Mariko
full_name: Miyata, Mariko
last_name: Miyata
- first_name: Elek
full_name: Molnár, Elek
last_name: Molnár
- first_name: Yasuo
full_name: Mori, Yasuo
last_name: Mori
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Keiji
full_name: Imoto, Keiji
last_name: Imoto
citation:
ama: Kodama T, Itsukaichi Nishida Y, Fukazawa Y, et al. A CaV2.1 calcium channel
mutation rocker reduces the number of postsynaptic AMPA receptors in parallel
fiber-Purkinje cell synapses. European Journal of Neuroscience. 2006;24(11):2993-3007.
doi:10.1111/j.1460-9568.2006.05191.x
apa: Kodama, T., Itsukaichi Nishida, Y., Fukazawa, Y., Wakamori, M., Miyata, M.,
Molnár, E., … Imoto, K. (2006). A CaV2.1 calcium channel mutation rocker reduces
the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses.
European Journal of Neuroscience. Wiley-Blackwell. https://doi.org/10.1111/j.1460-9568.2006.05191.x
chicago: Kodama, Takashi, Yuko Itsukaichi Nishida, Yugo Fukazawa, Minoru Wakamori,
Mariko Miyata, Elek Molnár, Yasuo Mori, Ryuichi Shigemoto, and Keiji Imoto. “A
CaV2.1 Calcium Channel Mutation Rocker Reduces the Number of Postsynaptic AMPA
Receptors in Parallel Fiber-Purkinje Cell Synapses.” European Journal of Neuroscience.
Wiley-Blackwell, 2006. https://doi.org/10.1111/j.1460-9568.2006.05191.x.
ieee: T. Kodama et al., “A CaV2.1 calcium channel mutation rocker reduces
the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses,”
European Journal of Neuroscience, vol. 24, no. 11. Wiley-Blackwell, pp.
2993–3007, 2006.
ista: Kodama T, Itsukaichi Nishida Y, Fukazawa Y, Wakamori M, Miyata M, Molnár E,
Mori Y, Shigemoto R, Imoto K. 2006. A CaV2.1 calcium channel mutation rocker reduces
the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses.
European Journal of Neuroscience. 24(11), 2993–3007.
mla: Kodama, Takashi, et al. “A CaV2.1 Calcium Channel Mutation Rocker Reduces the
Number of Postsynaptic AMPA Receptors in Parallel Fiber-Purkinje Cell Synapses.”
European Journal of Neuroscience, vol. 24, no. 11, Wiley-Blackwell, 2006,
pp. 2993–3007, doi:10.1111/j.1460-9568.2006.05191.x.
short: T. Kodama, Y. Itsukaichi Nishida, Y. Fukazawa, M. Wakamori, M. Miyata, E.
Molnár, Y. Mori, R. Shigemoto, K. Imoto, European Journal of Neuroscience 24 (2006)
2993–3007.
date_created: 2018-12-11T11:58:56Z
date_published: 2006-12-01T00:00:00Z
date_updated: 2021-01-12T06:58:54Z
day: '01'
doi: 10.1111/j.1460-9568.2006.05191.x
extern: 1
intvolume: ' 24'
issue: '11'
month: '12'
page: 2993 - 3007
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4233'
quality_controlled: 0
status: public
title: A CaV2.1 calcium channel mutation rocker reduces the number of postsynaptic
AMPA receptors in parallel fiber-Purkinje cell synapses
type: journal_article
volume: 24
year: '2006'
...
---
_id: '2661'
abstract:
- lang: eng
text: GABAB receptors are the G protein-coupled receptors for the main inhibitory
neurotransmitter in the brain, γ-aminobutyric acid (GABA). Molecular diversity
in the GABAB system arises from the GABAB1a and GABAB1b subunit isoforms that
solely differ in their ectodomains by a pair of sushi repeats that is unique to
GABAB1a. Using a combined genetic, physiological, and morphological approach,
we now demonstrate that GABAB1 isoforms localize to distinct synaptic sites and
convey separate functions in vivo. At hippocampal CA3-to-CA1 synapses, GABAB1a
assembles heteroreceptors inhibiting glutamate release, while predominantly GABAB1b
mediates postsynaptic inhibition. Electron microscopy reveals a synaptic distribution
of GABAB1 isoforms that agrees with the observed functional differences. Transfected
CA3 neurons selectively express GABAB1a in distal axons, suggesting that the sushi
repeats, a conserved protein interaction motif, specify heteroreceptor localization.
The constitutive absence of GABAB1a but not GABAB1b results in impaired synaptic
plasticity and hippocampus-dependent memory, emphasizing molecular differences
in synaptic GABAB functions.
author:
- first_name: Réjan
full_name: Vigot, Réjan
last_name: Vigot
- first_name: Samuel
full_name: Barbieri, Samuel
last_name: Barbieri
- first_name: Hans
full_name: Bräuner-Osborne, Hans
last_name: Bräuner Osborne
- first_name: Rostislav
full_name: Tureček, Rostislav
last_name: Tureček
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Yan
full_name: Zhang, Yan Ping
last_name: Zhang
- first_name: Rafael
full_name: Luján, Rafael
last_name: Luján
- first_name: Laura
full_name: Jacobson, Laura H
last_name: Jacobson
- first_name: Barbara
full_name: Biermann, Barbara
last_name: Biermann
- first_name: Jean
full_name: Fritschy, Jean-Marc
last_name: Fritschy
- first_name: Claire
full_name: Vacher, Claire-Marie
last_name: Vacher
- first_name: Matthias
full_name: Müller, Matthias P
last_name: Müller
- first_name: Gilles
full_name: Sansig, Gilles
last_name: Sansig
- first_name: Nicole
full_name: Guetg, Nicole
last_name: Guetg
- first_name: John
full_name: Cryan, John F
last_name: Cryan
- first_name: Klemens
full_name: Kaupmann, Klemens
last_name: Kaupmann
- first_name: Martin
full_name: Gassmann, Martin
last_name: Gassmann
- first_name: Thomas
full_name: Oertner, Thomas G
last_name: Oertner
- first_name: Bernhard
full_name: Bettler, Bernhard
last_name: Bettler
citation:
ama: Vigot R, Barbieri S, Bräuner Osborne H, et al. Differential Compartmentalization
and Distinct Functions of GABAB Receptor Variants. Neuron. 2006;50(4):589-601.
doi:10.1016/j.neuron.2006.04.014
apa: Vigot, R., Barbieri, S., Bräuner Osborne, H., Tureček, R., Shigemoto, R., Zhang,
Y., … Bettler, B. (2006). Differential Compartmentalization and Distinct Functions
of GABAB Receptor Variants. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2006.04.014
chicago: Vigot, Réjan, Samuel Barbieri, Hans Bräuner Osborne, Rostislav Tureček,
Ryuichi Shigemoto, Yan Zhang, Rafael Luján, et al. “Differential Compartmentalization
and Distinct Functions of GABAB Receptor Variants.” Neuron. Elsevier, 2006.
https://doi.org/10.1016/j.neuron.2006.04.014.
ieee: R. Vigot et al., “Differential Compartmentalization and Distinct Functions
of GABAB Receptor Variants,” Neuron, vol. 50, no. 4. Elsevier, pp. 589–601,
2006.
ista: Vigot R, Barbieri S, Bräuner Osborne H, Tureček R, Shigemoto R, Zhang Y, Luján
R, Jacobson L, Biermann B, Fritschy J, Vacher C, Müller M, Sansig G, Guetg N,
Cryan J, Kaupmann K, Gassmann M, Oertner T, Bettler B. 2006. Differential Compartmentalization
and Distinct Functions of GABAB Receptor Variants. Neuron. 50(4), 589–601.
mla: Vigot, Réjan, et al. “Differential Compartmentalization and Distinct Functions
of GABAB Receptor Variants.” Neuron, vol. 50, no. 4, Elsevier, 2006, pp.
589–601, doi:10.1016/j.neuron.2006.04.014.
short: R. Vigot, S. Barbieri, H. Bräuner Osborne, R. Tureček, R. Shigemoto, Y. Zhang,
R. Luján, L. Jacobson, B. Biermann, J. Fritschy, C. Vacher, M. Müller, G. Sansig,
N. Guetg, J. Cryan, K. Kaupmann, M. Gassmann, T. Oertner, B. Bettler, Neuron 50
(2006) 589–601.
date_created: 2018-12-11T11:58:56Z
date_published: 2006-05-18T00:00:00Z
date_updated: 2021-01-12T06:58:54Z
day: '18'
doi: 10.1016/j.neuron.2006.04.014
extern: 1
intvolume: ' 50'
issue: '4'
month: '05'
page: 589 - 601
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '4237'
quality_controlled: 0
status: public
title: Differential Compartmentalization and Distinct Functions of GABAB Receptor
Variants
type: journal_article
volume: 50
year: '2006'
...
---
_id: '2662'
abstract:
- lang: eng
text: G-protein-coupled inwardly rectifying K+ channels (Kir3 channels) coupled
to metabotropic GABAB receptors are essential for the control of neuronal excitation.
To determine the distribution of Kir3 channels and their spatial relationship
to GABAB receptors on hippocampal pyramidal cells, we used a high-resolution immunocytochemical
approach. Immunoreactivity for the Kir3.2 subunit was most abundant postsynaptically
and localized to the extrasynaptic plasma membrane of dendritic shafts and spines
of principal cells. Quantitative analysis of immunogold particles for Kir3.2 revealed
an enrichment of the protein around putative glutamatergic synapses on dendritic
spines, similar to that of GABA B1. Consistent with this observation, a high degree
of coclustering of Kir3.2 and GABAB1 was revealed around excitatory synapses by
the highly sensitive SDS-digested freeze-fracture replica immunolabeling. In contrast,
in dendritic shafts receptors and channels were found to be mainly segregated.
These results suggest that Kir3.2-containing K+ channels on dendritic spines preferentially
mediate the effect of GABA, whereas channels on dendritic shafts are likely to
be activated by other neurotransmitters as well. Thus, Kir3 channels, localized
to different subcellular compartments of hippocampal principal cells, appear to
be differentially involved in synaptic integration in pyramidal cell dendrites.
author:
- first_name: Ákos
full_name: Kulik, Ákos
last_name: Kulik
- first_name: Imre
full_name: Vida, Imre
last_name: Vida
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Nicole
full_name: Guetg, Nicole
last_name: Guetg
- first_name: Yu
full_name: Kasugai, Yu
last_name: Kasugai
- first_name: Cheryl
full_name: Marker, Cheryl L
last_name: Marker
- first_name: Franck
full_name: Rigato, Franck
last_name: Rigato
- first_name: Bernhard
full_name: Bettler, Bernhard
last_name: Bettler
- first_name: Kevin
full_name: Wickman, Kevin D
last_name: Wickman
- first_name: Michael
full_name: Frotscher, Michael
last_name: Frotscher
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
citation:
ama: Kulik Á, Vida I, Fukazawa Y, et al. Compartment-dependent colocalization of
Kir3.2-containing K+ channels and GABAB receptors in hippocampal pyramidal cells.
Journal of Neuroscience. 2006;26(16):4289-4297. doi:10.1523/JNEUROSCI.4178-05.2006
apa: Kulik, Á., Vida, I., Fukazawa, Y., Guetg, N., Kasugai, Y., Marker, C., … Shigemoto,
R. (2006). Compartment-dependent colocalization of Kir3.2-containing K+ channels
and GABAB receptors in hippocampal pyramidal cells. Journal of Neuroscience.
Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.4178-05.2006
chicago: Kulik, Ákos, Imre Vida, Yugo Fukazawa, Nicole Guetg, Yu Kasugai, Cheryl
Marker, Franck Rigato, et al. “Compartment-Dependent Colocalization of Kir3.2-Containing
K+ Channels and GABAB Receptors in Hippocampal Pyramidal Cells.” Journal of
Neuroscience. Society for Neuroscience, 2006. https://doi.org/10.1523/JNEUROSCI.4178-05.2006.
ieee: Á. Kulik et al., “Compartment-dependent colocalization of Kir3.2-containing
K+ channels and GABAB receptors in hippocampal pyramidal cells,” Journal of
Neuroscience, vol. 26, no. 16. Society for Neuroscience, pp. 4289–4297, 2006.
ista: Kulik Á, Vida I, Fukazawa Y, Guetg N, Kasugai Y, Marker C, Rigato F, Bettler
B, Wickman K, Frotscher M, Shigemoto R. 2006. Compartment-dependent colocalization
of Kir3.2-containing K+ channels and GABAB receptors in hippocampal pyramidal
cells. Journal of Neuroscience. 26(16), 4289–4297.
mla: Kulik, Ákos, et al. “Compartment-Dependent Colocalization of Kir3.2-Containing
K+ Channels and GABAB Receptors in Hippocampal Pyramidal Cells.” Journal of
Neuroscience, vol. 26, no. 16, Society for Neuroscience, 2006, pp. 4289–97,
doi:10.1523/JNEUROSCI.4178-05.2006.
short: Á. Kulik, I. Vida, Y. Fukazawa, N. Guetg, Y. Kasugai, C. Marker, F. Rigato,
B. Bettler, K. Wickman, M. Frotscher, R. Shigemoto, Journal of Neuroscience 26
(2006) 4289–4297.
date_created: 2018-12-11T11:58:56Z
date_published: 2006-04-19T00:00:00Z
date_updated: 2021-01-12T06:58:54Z
day: '19'
doi: 10.1523/JNEUROSCI.4178-05.2006
extern: 1
intvolume: ' 26'
issue: '16'
month: '04'
page: 4289 - 4297
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '4235'
quality_controlled: 0
status: public
title: Compartment-dependent colocalization of Kir3.2-containing K+ channels and GABAB
receptors in hippocampal pyramidal cells
type: journal_article
volume: 26
year: '2006'
...
---
_id: '2660'
abstract:
- lang: eng
text: Pavlovian fear conditioning, a simple form of associative learning, is thought
to involve the induction of associative, NMDA receptor-dependent long-term potentiation
(LTP) in the lateral amygdala. Using a combined genetic and electrophysiological
approach, we show here that lack of a specific GABAB receptor subtype, GABAB(1a,2),
unmasks a nonassociative, NMDA receptor-independent form of presynaptic LTP at
cortico-amygdala afferents. Moreover, the level of presynaptic GABA B(1a,2) receptor
activation, and hence the balance between associative and nonassociative forms
of LTP, can be dynamically modulated by local inhibitory activity. At the behavioral
level, genetic loss of GABA B(1a) results in a generalization of conditioned fear
to nonconditioned stimuli. Our findings indicate that presynaptic inhibition through
GABAB(1a,2) receptors serves as an activity-dependent constraint on the induction
of homosynaptic plasticity, which may be important to prevent the generalization
of conditioned fear.
author:
- first_name: Hamdy
full_name: Shaban, Hamdy
last_name: Shaban
- first_name: Yann
full_name: Humeau, Yann
last_name: Humeau
- first_name: Cyril
full_name: Herry, Cyril
last_name: Herry
- first_name: Guillaume
full_name: Cassasus, Guillaume
last_name: Cassasus
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Stéphane
full_name: Ciocchi, Stéphane
last_name: Ciocchi
- first_name: Samuel
full_name: Barbieri, Samuel
last_name: Barbieri
- first_name: Herman
full_name: Van Der Putten, Herman V
last_name: Van Der Putten
- first_name: Klemens
full_name: Kaupmann, Klemens
last_name: Kaupmann
- first_name: Bernhard
full_name: Bettler, Bernhard
last_name: Bettler
- first_name: Andreas
full_name: Lüthi, Andreas
last_name: Lüthi
citation:
ama: Shaban H, Humeau Y, Herry C, et al. Generalization of amygdala LTP and conditioned
fear in the absence of presynaptic inhibition. Nature Neuroscience. 2006;9(8):1028-1035.
doi:10.1038/nn1732
apa: Shaban, H., Humeau, Y., Herry, C., Cassasus, G., Shigemoto, R., Ciocchi, S.,
… Lüthi, A. (2006). Generalization of amygdala LTP and conditioned fear in the
absence of presynaptic inhibition. Nature Neuroscience. Nature Publishing
Group. https://doi.org/10.1038/nn1732
chicago: Shaban, Hamdy, Yann Humeau, Cyril Herry, Guillaume Cassasus, Ryuichi Shigemoto,
Stéphane Ciocchi, Samuel Barbieri, et al. “Generalization of Amygdala LTP and
Conditioned Fear in the Absence of Presynaptic Inhibition.” Nature Neuroscience.
Nature Publishing Group, 2006. https://doi.org/10.1038/nn1732.
ieee: H. Shaban et al., “Generalization of amygdala LTP and conditioned fear
in the absence of presynaptic inhibition,” Nature Neuroscience, vol. 9,
no. 8. Nature Publishing Group, pp. 1028–1035, 2006.
ista: Shaban H, Humeau Y, Herry C, Cassasus G, Shigemoto R, Ciocchi S, Barbieri
S, Van Der Putten H, Kaupmann K, Bettler B, Lüthi A. 2006. Generalization of amygdala
LTP and conditioned fear in the absence of presynaptic inhibition. Nature Neuroscience.
9(8), 1028–1035.
mla: Shaban, Hamdy, et al. “Generalization of Amygdala LTP and Conditioned Fear
in the Absence of Presynaptic Inhibition.” Nature Neuroscience, vol. 9,
no. 8, Nature Publishing Group, 2006, pp. 1028–35, doi:10.1038/nn1732.
short: H. Shaban, Y. Humeau, C. Herry, G. Cassasus, R. Shigemoto, S. Ciocchi, S.
Barbieri, H. Van Der Putten, K. Kaupmann, B. Bettler, A. Lüthi, Nature Neuroscience
9 (2006) 1028–1035.
date_created: 2018-12-11T11:58:55Z
date_published: 2006-08-01T00:00:00Z
date_updated: 2021-01-12T06:58:53Z
day: '01'
doi: 10.1038/nn1732
extern: 1
intvolume: ' 9'
issue: '8'
month: '08'
page: 1028 - 1035
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '4236'
quality_controlled: 0
status: public
title: Generalization of amygdala LTP and conditioned fear in the absence of presynaptic
inhibition
type: journal_article
volume: 9
year: '2006'
...
---
_id: '2664'
abstract:
- lang: eng
text: Metabotropic glutamate receptors (mGlus) are a family of G-protein-coupled
receptors activated by the neurotransmitter glutamate. Molecular cloning has revealed
eight different subtypes (mGlu1-8) with distinct molecular and pharmacological
properties. Multiplicity in this receptor family is further generated through
alternative splicing. mGlus activate a multitude of signalling pathways important
for modulating neuronal excitability, synaptic plasticity and feedback regulation
of neurotransmitter release. In this review, we summarize anatomical findings
(from our work and that of other laboratories) describing their distribution in
the central nervous system. Recent evidence regarding the localization of these
receptors in peripheral tissues will also be examined. The distinct regional,
cellular and subcellular distribution of mGlus in the brain will be discussed
in view of their relationship to neurotransmitter release sites and of possible
functional implications.
author:
- first_name: Francesco
full_name: Ferraguti, Francesco
last_name: Ferraguti
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
citation:
ama: Ferraguti F, Shigemoto R. Metabotropic glutamate receptors. Cell and Tissue
Research. 2006;326(2):483-504. doi:10.1007/s00441-006-0266-5
apa: Ferraguti, F., & Shigemoto, R. (2006). Metabotropic glutamate receptors.
Cell and Tissue Research. Springer. https://doi.org/10.1007/s00441-006-0266-5
chicago: Ferraguti, Francesco, and Ryuichi Shigemoto. “Metabotropic Glutamate Receptors.”
Cell and Tissue Research. Springer, 2006. https://doi.org/10.1007/s00441-006-0266-5.
ieee: F. Ferraguti and R. Shigemoto, “Metabotropic glutamate receptors,” Cell
and Tissue Research, vol. 326, no. 2. Springer, pp. 483–504, 2006.
ista: Ferraguti F, Shigemoto R. 2006. Metabotropic glutamate receptors. Cell and
Tissue Research. 326(2), 483–504.
mla: Ferraguti, Francesco, and Ryuichi Shigemoto. “Metabotropic Glutamate Receptors.”
Cell and Tissue Research, vol. 326, no. 2, Springer, 2006, pp. 483–504,
doi:10.1007/s00441-006-0266-5.
short: F. Ferraguti, R. Shigemoto, Cell and Tissue Research 326 (2006) 483–504.
date_created: 2018-12-11T11:58:57Z
date_published: 2006-11-01T00:00:00Z
date_updated: 2020-07-14T12:45:44Z
day: '01'
doi: 10.1007/s00441-006-0266-5
extern: 1
intvolume: ' 326'
issue: '2'
month: '11'
page: 483 - 504
publication: Cell and Tissue Research
publication_status: published
publisher: Springer
publist_id: '4234'
quality_controlled: 0
status: public
title: Metabotropic glutamate receptors
type: review
volume: 326
year: '2006'
...
---
_id: '2747'
abstract:
- lang: eng
text: Consider a system of N bosons on the three-dimensional unit torus interacting
via a pair potential N 2V(N(x i - x j)) where x = (x i, . . ., x N) denotes the
positions of the particles. Suppose that the initial data ψ N,0 satisfies the
condition 〈ψ N,0, H 2 Nψ N,0) ≤ C N 2 where H N is the Hamiltonian of the Bose
system. This condition is satisfied if ψ N,0 = W Nφ N,t where W N is an approximate
ground state to H N and φ N,0 is regular. Let ψ N,t denote the solution to the
Schrödinger equation with Hamiltonian H N. Gross and Pitaevskii proposed to model
the dynamics of such a system by a nonlinear Schrödinger equation, the Gross-Pitaevskii
(GP) equation. The GP hierarchy is an infinite BBGKY hierarchy of equations so
that if u t solves the GP equation, then the family of k-particle density matrices
⊗ k |u t?〉 〈 t | solves the GP hierarchy. We prove that as N → ∞ the limit points
of the k-particle density matrices of ψ N,t are solutions of the GP hierarchy.
Our analysis requires that the N-boson dynamics be described by a modified Hamiltonian
that cuts off the pair interactions whenever at least three particles come into
a region with diameter much smaller than the typical interparticle distance. Our
proof can be extended to a modified Hamiltonian that only forbids at least n particles
from coming close together for any fixed n.
author:
- first_name: László
full_name: László Erdös
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Benjamin
full_name: Schlein, Benjamin
last_name: Schlein
- first_name: Horng
full_name: Yau, Horng-Tzer
last_name: Yau
citation:
ama: Erdös L, Schlein B, Yau H. Derivation of the Gross-Pitaevskii hierarchy for
the dynamics of Bose-Einstein condensate. Communications on Pure and Applied
Mathematics. 2006;59(12):1659-1741. doi:10.1002/cpa.20123
apa: Erdös, L., Schlein, B., & Yau, H. (2006). Derivation of the Gross-Pitaevskii
hierarchy for the dynamics of Bose-Einstein condensate. Communications on Pure
and Applied Mathematics. Wiley-Blackwell. https://doi.org/10.1002/cpa.20123
chicago: Erdös, László, Benjamin Schlein, and Horng Yau. “Derivation of the Gross-Pitaevskii
Hierarchy for the Dynamics of Bose-Einstein Condensate.” Communications on
Pure and Applied Mathematics. Wiley-Blackwell, 2006. https://doi.org/10.1002/cpa.20123.
ieee: L. Erdös, B. Schlein, and H. Yau, “Derivation of the Gross-Pitaevskii hierarchy
for the dynamics of Bose-Einstein condensate,” Communications on Pure and Applied
Mathematics, vol. 59, no. 12. Wiley-Blackwell, pp. 1659–1741, 2006.
ista: Erdös L, Schlein B, Yau H. 2006. Derivation of the Gross-Pitaevskii hierarchy
for the dynamics of Bose-Einstein condensate. Communications on Pure and Applied
Mathematics. 59(12), 1659–1741.
mla: Erdös, László, et al. “Derivation of the Gross-Pitaevskii Hierarchy for the
Dynamics of Bose-Einstein Condensate.” Communications on Pure and Applied Mathematics,
vol. 59, no. 12, Wiley-Blackwell, 2006, pp. 1659–741, doi:10.1002/cpa.20123.
short: L. Erdös, B. Schlein, H. Yau, Communications on Pure and Applied Mathematics
59 (2006) 1659–1741.
date_created: 2018-12-11T11:59:23Z
date_published: 2006-12-01T00:00:00Z
date_updated: 2021-01-12T06:59:26Z
day: '01'
doi: 10.1002/cpa.20123
extern: 1
intvolume: ' 59'
issue: '12'
month: '12'
page: 1659 - 1741
publication: Communications on Pure and Applied Mathematics
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4145'
quality_controlled: 0
status: public
title: Derivation of the Gross-Pitaevskii hierarchy for the dynamics of Bose-Einstein
condensate
type: journal_article
volume: 59
year: '2006'
...
---
_id: '2745'
abstract:
- lang: eng
text: 'We consider the dynamics of N boson systems interacting through a pair potential
N -1 V a (x i -x j ) where V a (x)=a -3 V(x/a). We denote the solution to the
N-particle Schrödinger equation by Ψ N, t . Recall that the Gross-Pitaevskii (GP)
equation is a nonlinear Schrödinger equation and the GP hierarchy is an infinite
BBGKY hierarchy of equations so that if u t solves the GP equation, then the family
of k-particle density matrices [InlineMediaObject not available: see fulltext.]
solves the GP hierarchy. Under the assumption that a = Nε for 0 < ε < 3/5,
we prove that as N→∞ the limit points of the k-particle density matrices of Ψ
N, t are solutions of the GP hierarchy with the coupling constant in the nonlinear
term of the GP equation given by ∫ V (x)dx. The uniqueness of the solutions of
this hierarchy remains an open question.'
author:
- first_name: Alexander
full_name: Elgart, Alexander
last_name: Elgart
- first_name: László
full_name: László Erdös
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Benjamin
full_name: Schlein, Benjamin
last_name: Schlein
- first_name: Horng
full_name: Yau, Horng-Tzer
last_name: Yau
citation:
ama: Elgart A, Erdös L, Schlein B, Yau H. Gross-Pitaevskii equation as the mean
field limit of weakly coupled bosons. Archive for Rational Mechanics and Analysis.
2006;179(2):265-283. doi:10.1007/s00205-005-0388-z
apa: Elgart, A., Erdös, L., Schlein, B., & Yau, H. (2006). Gross-Pitaevskii
equation as the mean field limit of weakly coupled bosons. Archive for Rational
Mechanics and Analysis. Springer. https://doi.org/10.1007/s00205-005-0388-z
chicago: Elgart, Alexander, László Erdös, Benjamin Schlein, and Horng Yau. “Gross-Pitaevskii
Equation as the Mean Field Limit of Weakly Coupled Bosons.” Archive for Rational
Mechanics and Analysis. Springer, 2006. https://doi.org/10.1007/s00205-005-0388-z.
ieee: A. Elgart, L. Erdös, B. Schlein, and H. Yau, “Gross-Pitaevskii equation as
the mean field limit of weakly coupled bosons,” Archive for Rational Mechanics
and Analysis, vol. 179, no. 2. Springer, pp. 265–283, 2006.
ista: Elgart A, Erdös L, Schlein B, Yau H. 2006. Gross-Pitaevskii equation as the
mean field limit of weakly coupled bosons. Archive for Rational Mechanics and
Analysis. 179(2), 265–283.
mla: Elgart, Alexander, et al. “Gross-Pitaevskii Equation as the Mean Field Limit
of Weakly Coupled Bosons.” Archive for Rational Mechanics and Analysis,
vol. 179, no. 2, Springer, 2006, pp. 265–83, doi:10.1007/s00205-005-0388-z.
short: A. Elgart, L. Erdös, B. Schlein, H. Yau, Archive for Rational Mechanics and
Analysis 179 (2006) 265–283.
date_created: 2018-12-11T11:59:22Z
date_published: 2006-02-01T00:00:00Z
date_updated: 2021-01-12T06:59:25Z
day: '01'
doi: 10.1007/s00205-005-0388-z
extern: 1
intvolume: ' 179'
issue: '2'
month: '02'
page: 265 - 283
publication: Archive for Rational Mechanics and Analysis
publication_status: published
publisher: Springer
publist_id: '4147'
quality_controlled: 0
status: public
title: Gross-Pitaevskii equation as the mean field limit of weakly coupled bosons
type: journal_article
volume: 179
year: '2006'
...
---
_id: '2746'
abstract:
- lang: eng
text: We consider random Schrödinger equations on Rd or Zd for d ≥ 3 with uncorrelated,
identically distributed random potential. Denote by λ the coupling constant and
ψt the solution with initial data ψ0.
alternative_title:
- LNP
author:
- first_name: László
full_name: László Erdös
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Manfred
full_name: Salmhofer, Manfred
last_name: Salmhofer
- first_name: Horng
full_name: Yau, Horng-Tzer
last_name: Yau
citation:
ama: 'Erdös L, Salmhofer M, Yau H. Towards the quantum Brownian motion. In: Vol
690. World Scientific Publishing; 2006:233-257. doi:10.1007/3-540-34273-7_18'
apa: 'Erdös, L., Salmhofer, M., & Yau, H. (2006). Towards the quantum Brownian
motion (Vol. 690, pp. 233–257). Presented at the QMath: Mathematical Results in
Quantum Physics, World Scientific Publishing. https://doi.org/10.1007/3-540-34273-7_18'
chicago: Erdös, László, Manfred Salmhofer, and Horng Yau. “Towards the Quantum Brownian
Motion,” 690:233–57. World Scientific Publishing, 2006. https://doi.org/10.1007/3-540-34273-7_18.
ieee: 'L. Erdös, M. Salmhofer, and H. Yau, “Towards the quantum Brownian motion,”
presented at the QMath: Mathematical Results in Quantum Physics, 2006, vol. 690,
pp. 233–257.'
ista: 'Erdös L, Salmhofer M, Yau H. 2006. Towards the quantum Brownian motion. QMath:
Mathematical Results in Quantum Physics, LNP, vol. 690, 233–257.'
mla: Erdös, László, et al. Towards the Quantum Brownian Motion. Vol. 690,
World Scientific Publishing, 2006, pp. 233–57, doi:10.1007/3-540-34273-7_18.
short: L. Erdös, M. Salmhofer, H. Yau, in:, World Scientific Publishing, 2006, pp.
233–257.
conference:
name: 'QMath: Mathematical Results in Quantum Physics'
date_created: 2018-12-11T11:59:23Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T06:59:25Z
day: '01'
doi: 10.1007/3-540-34273-7_18
extern: 1
intvolume: ' 690'
month: '01'
page: 233 - 257
publication_status: published
publisher: World Scientific Publishing
publist_id: '4146'
quality_controlled: 0
status: public
title: Towards the quantum Brownian motion
type: conference
volume: 690
year: '2006'
...
---
_id: '2791'
abstract:
- lang: eng
text: Generally, the motion of fluids is smooth and laminar at low speeds but becomes
highly disordered and turbulent as the velocity increases. The transition from
laminar to turbulent flow can involve a sequence of instabilities in which the
system realizes progressively more complicated states, or it can occur suddenly.
Once the transition has taken place, it is generally assumed that, under steady
conditions, the turbulent state will persist indefinitely. The flow of a fluid
down a straight pipe provides a ubiquitous example of a shear flow undergoing
a sudden transition from laminar to turbulent motion. Extensive calculations and
experimental studies have shown that, at relatively low flow rates, turbulence
in pipes is transient, and is characterized by an exponential distribution of
lifetimes. They also suggest that for Reynolds numbers exceeding a critical value
the lifetime diverges (that is, becomes infinitely large), marking a change from
transient to persistent turbulence. Here we present experimental data and numerical
calculations covering more than two decades of lifetimes, showing that the lifetime
does not in fact diverge but rather increases exponentially with the Reynolds
number. This implies that turbulence in pipes is only a transient event (contrary
to the commonly accepted view), and that the turbulent and laminar states remain
dynamically connected, suggesting avenues for turbulence control.
author:
- first_name: Björn
full_name: Björn Hof
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
- first_name: Jerry
full_name: Westerweel, Jerry
last_name: Westerweel
- first_name: Tobias
full_name: Schneider, Tobias M
last_name: Schneider
- first_name: Bruno
full_name: Eckhardt, Bruno
last_name: Eckhardt
citation:
ama: Hof B, Westerweel J, Schneider T, Eckhardt B. Finite lifetime of turbulence
in shear flows. Nature. 2006;443(7107):59-62. doi:10.1038/nature05089
apa: Hof, B., Westerweel, J., Schneider, T., & Eckhardt, B. (2006). Finite lifetime
of turbulence in shear flows. Nature. Nature Publishing Group. https://doi.org/10.1038/nature05089
chicago: Hof, Björn, Jerry Westerweel, Tobias Schneider, and Bruno Eckhardt. “Finite
Lifetime of Turbulence in Shear Flows.” Nature. Nature Publishing Group,
2006. https://doi.org/10.1038/nature05089.
ieee: B. Hof, J. Westerweel, T. Schneider, and B. Eckhardt, “Finite lifetime of
turbulence in shear flows,” Nature, vol. 443, no. 7107. Nature Publishing
Group, pp. 59–62, 2006.
ista: Hof B, Westerweel J, Schneider T, Eckhardt B. 2006. Finite lifetime of turbulence
in shear flows. Nature. 443(7107), 59–62.
mla: Hof, Björn, et al. “Finite Lifetime of Turbulence in Shear Flows.” Nature,
vol. 443, no. 7107, Nature Publishing Group, 2006, pp. 59–62, doi:10.1038/nature05089.
short: B. Hof, J. Westerweel, T. Schneider, B. Eckhardt, Nature 443 (2006) 59–62.
date_created: 2018-12-11T11:59:37Z
date_published: 2006-09-07T00:00:00Z
date_updated: 2021-01-12T06:59:44Z
day: '07'
doi: 10.1038/nature05089
extern: 1
intvolume: ' 443'
issue: '7107'
month: '09'
page: 59 - 62
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '4098'
quality_controlled: 0
status: public
title: Finite lifetime of turbulence in shear flows
type: journal_article
volume: 443
year: '2006'
...
---
_id: '2792'
abstract:
- lang: eng
text: Transition to turbulence in pipe flow has posed a riddle in fluid dynamics
since the pioneering experiments of Reynolds[1]. Although the laminar flow is
linearly stable for all flow rates, practical pipe flows become turbulent at large
enough flow speeds. Turbulence arises suddenly and fully without distinct steps
and without a clear critical point. The complexity of this problem has puzzled
mathematicians, physicists and engineers for more than a century and no satisfactory
explanation of this problem has been given. In a very recent theoretical approach
it has been suggested that unstable solutions of the Navier Stokes equations may
hold the key to understanding this problem. In numerical studies such unstable
states have been identified as exact solutions for the idealized case of a pipe
with periodic boundary conditions[2, 3]. These solutions have the form of waves
extending through the entire pipe and travelling in the streamwise direction at
a phase speed close to the bulk velocity of the fluid. With the aid of a recently
developed high-speed stereoscopic Particle Image Velocimetry (PIV) system, we
were able to observe transients of such unstable solutions in turbulent pipe flow[4].
author:
- first_name: Björn
full_name: Björn Hof
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
- first_name: Casimir
full_name: van Doorne, Casimir W
last_name: Van Doorne
- first_name: Jerry
full_name: Westerweel, Jerry
last_name: Westerweel
- first_name: Frans
full_name: Nieuwstadt, Frans T
last_name: Nieuwstadt
citation:
ama: Hof B, Van Doorne C, Westerweel J, Nieuwstadt F. Observation of nonlinear travelling
waves in turbulent pipe flow. Fluid Mechanics and its Applications. 2006;78:109-114.
doi:10.1007/1-4020-4159-4_11
apa: Hof, B., Van Doorne, C., Westerweel, J., & Nieuwstadt, F. (2006). Observation
of nonlinear travelling waves in turbulent pipe flow. Fluid Mechanics and Its
Applications. Springer. https://doi.org/10.1007/1-4020-4159-4_11
chicago: Hof, Björn, Casimir Van Doorne, Jerry Westerweel, and Frans Nieuwstadt.
“Observation of Nonlinear Travelling Waves in Turbulent Pipe Flow.” Fluid Mechanics
and Its Applications. Springer, 2006. https://doi.org/10.1007/1-4020-4159-4_11.
ieee: B. Hof, C. Van Doorne, J. Westerweel, and F. Nieuwstadt, “Observation of nonlinear
travelling waves in turbulent pipe flow,” Fluid Mechanics and its Applications,
vol. 78. Springer, pp. 109–114, 2006.
ista: Hof B, Van Doorne C, Westerweel J, Nieuwstadt F. 2006. Observation of nonlinear
travelling waves in turbulent pipe flow. Fluid Mechanics and its Applications.
78, 109–114.
mla: Hof, Björn, et al. “Observation of Nonlinear Travelling Waves in Turbulent
Pipe Flow.” Fluid Mechanics and Its Applications, vol. 78, Springer, 2006,
pp. 109–14, doi:10.1007/1-4020-4159-4_11.
short: B. Hof, C. Van Doorne, J. Westerweel, F. Nieuwstadt, Fluid Mechanics and
Its Applications 78 (2006) 109–114.
date_created: 2018-12-11T11:59:37Z
date_published: 2006-01-18T00:00:00Z
date_updated: 2021-01-12T06:59:45Z
day: '18'
doi: 10.1007/1-4020-4159-4_11
extern: 1
intvolume: ' 78'
month: '01'
page: 109 - 114
publication: Fluid Mechanics and its Applications
publication_status: published
publisher: Springer
publist_id: '4097'
quality_controlled: 0
status: public
title: Observation of nonlinear travelling waves in turbulent pipe flow
type: journal_article
volume: 78
year: '2006'
...
---
_id: '2894'
abstract:
- lang: eng
text: IL-10 is a potent anti-inflammatory and immunomodulatory cytokine, exerting
major effects in the degree and quality of the immune response. Using a newly
generated IL-10 reporter mouse model, which easily allows the study of IL-10 expression
from each allele in a single cell, we report here for the first time that IL-10
is predominantly monoallelic expressed in CD4+ T cells. Furthermore, we have compelling
evidence that this expression pattern is not due to parental imprinting, allelic
exclusion, or strong allelic bias. Instead, our results support a stochastic regulation
mechanism, in which the probability to initiate allelic transcription depends
on the strength of TCR signaling and subsequent capacity to overcome restrictions
imposed by chromatin hypoacetylation. In vivo Ag-experienced T cells show a higher
basal probability to transcribe IL-10 when compared with naive cells, yet still
show mostly monoallelic IL-10 expression. Finally, statistical analysis on allelic
expression data shows transcriptional independence between both alleles. We conclude
that CD4+ T cells have a low probability for IL-10 allelic activation resulting
in a predominantly monoallelic expression pattern, and that IL-10 expression appears
to be stochastically regulated by controlling the frequency of expressing cells,
rather than absolute protein levels per cell.
author:
- first_name: Dinis
full_name: Calado, Dinis P
last_name: Calado
- first_name: Tiago
full_name: Tiago Paixao
id: 2C5658E6-F248-11E8-B48F-1D18A9856A87
last_name: Paixao
orcid: 0000-0003-2361-3953
- first_name: Dan
full_name: Holmberg, Dan
last_name: Holmberg
- first_name: Matthias
full_name: Haury, Matthias
last_name: Haury
citation:
ama: Calado D, Paixao T, Holmberg D, Haury M. Stochastic Monoallelic Expression
of IL 10 in T Cells. Journal of Immunology. 2006;177(8):5358-5364. doi:10.4049/jimmunol.177.8.5358
apa: Calado, D., Paixao, T., Holmberg, D., & Haury, M. (2006). Stochastic Monoallelic
Expression of IL 10 in T Cells. Journal of Immunology. American Association
of Immunologists. https://doi.org/10.4049/jimmunol.177.8.5358
chicago: Calado, Dinis, Tiago Paixao, Dan Holmberg, and Matthias Haury. “Stochastic
Monoallelic Expression of IL 10 in T Cells.” Journal of Immunology. American
Association of Immunologists, 2006. https://doi.org/10.4049/jimmunol.177.8.5358 .
ieee: D. Calado, T. Paixao, D. Holmberg, and M. Haury, “Stochastic Monoallelic Expression
of IL 10 in T Cells,” Journal of Immunology, vol. 177, no. 8. American
Association of Immunologists, pp. 5358–5364, 2006.
ista: Calado D, Paixao T, Holmberg D, Haury M. 2006. Stochastic Monoallelic Expression
of IL 10 in T Cells. Journal of Immunology. 177(8), 5358–5364.
mla: Calado, Dinis, et al. “Stochastic Monoallelic Expression of IL 10 in T Cells.”
Journal of Immunology, vol. 177, no. 8, American Association of Immunologists,
2006, pp. 5358–64, doi:10.4049/jimmunol.177.8.5358
.
short: D. Calado, T. Paixao, D. Holmberg, M. Haury, Journal of Immunology 177 (2006)
5358–5364.
date_created: 2018-12-11T12:00:11Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:00:32Z
day: '01'
doi: '10.4049/jimmunol.177.8.5358 '
extern: 1
intvolume: ' 177'
issue: '8'
month: '01'
page: 5358 - 5364
publication: Journal of Immunology
publication_status: published
publisher: American Association of Immunologists
publist_id: '3864'
quality_controlled: 0
status: public
title: Stochastic Monoallelic Expression of IL 10 in T Cells
type: journal_article
volume: 177
year: '2006'
...
---
_id: '2921'
abstract:
- lang: eng
text: Most binocular stereo algorithms assume that all scene elements are visible
from both cameras. Scene elements that are visible from only one camera, known
as occlusions, pose an important challenge for stereo. Occlusions are important
for segmentation, because they appear near discontinuities. However, stereo algorithms
tend to ignore occlusions because of their difficulty. One reason is that occlusions
require the input images to be treated symmetrically, which complicates the problem
formulation. Worse, certain depth maps imply physically impossible scene configurations,
and must be excluded from the output. In this chapter we approach the problem
of binocular stereo with occlusions from an energy minimization viewpoint. We
begin by reviewing traditional stereo methods that do not handle occlusions. If
occlusions are ignored, it is easy to formulate the stereo problem as a pixel
labeling problem, which leads to an energy function that is common in early vision.
This kind of energy function can he minimized using graph cuts, which is a combinatorial
optimization technique that has proven to be very effective for low-level vision
problems. Motivated by this, we have designed two graph cut stereo algorithms
that are designed to handle occlusions. These algorithms produce promising experimental
results on real data with ground truth.
author:
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Ramin
full_name: Zabih, Ramin
last_name: Zabih
citation:
ama: 'Kolmogorov V, Zabih R. Graph cut algorithms for binocular stereo with occlusions.
In: Handbook of Mathematical Models in Computer Vision. Springer; 2006:423-427.
doi:10.1007/0-387-28831-7_26'
apa: Kolmogorov, V., & Zabih, R. (2006). Graph cut algorithms for binocular
stereo with occlusions. In Handbook of Mathematical Models in Computer Vision
(pp. 423–427). Springer. https://doi.org/10.1007/0-387-28831-7_26
chicago: Kolmogorov, Vladimir, and Ramin Zabih. “Graph Cut Algorithms for Binocular
Stereo with Occlusions.” In Handbook of Mathematical Models in Computer Vision,
423–27. Springer, 2006. https://doi.org/10.1007/0-387-28831-7_26.
ieee: V. Kolmogorov and R. Zabih, “Graph cut algorithms for binocular stereo with
occlusions,” in Handbook of Mathematical Models in Computer Vision, Springer,
2006, pp. 423–427.
ista: 'Kolmogorov V, Zabih R. 2006.Graph cut algorithms for binocular stereo with
occlusions. In: Handbook of Mathematical Models in Computer Vision. , 423–427.'
mla: Kolmogorov, Vladimir, and Ramin Zabih. “Graph Cut Algorithms for Binocular
Stereo with Occlusions.” Handbook of Mathematical Models in Computer Vision,
Springer, 2006, pp. 423–27, doi:10.1007/0-387-28831-7_26.
short: V. Kolmogorov, R. Zabih, in:, Handbook of Mathematical Models in Computer
Vision, Springer, 2006, pp. 423–427.
date_created: 2018-12-11T12:00:21Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:00:42Z
day: '01'
doi: 10.1007/0-387-28831-7_26
extern: 1
month: '01'
page: 423 - 427
publication: Handbook of Mathematical Models in Computer Vision
publication_status: published
publisher: Springer
publist_id: '3816'
quality_controlled: 0
status: public
title: Graph cut algorithms for binocular stereo with occlusions
type: book_chapter
year: '2006'
...
---
_id: '3002'
abstract:
- lang: eng
text: Arabidopsis thaliana is currently the most important model organism for basic
molecular plant research. It is also a favourable model for developmental biology,
as its embryogenesis follows a nearly invariant pattern of cell divisions and
cell type specifications. Study of embryogenesis can involve genetic, physiological
or biochemical approaches, but is always limited by the inaccessibility of the
embryos which develop deep inside maternal tissue. Thus, for developmental studies,
there is an increasing demand for methods which allow embryogenesis under artificial
conditions, providing better accessibility to experimental manipulation. In this
chapter, we address theoretical aspects of embryo culture, give some thoughts
on which embryo culture system is suited best for which application and finally
discuss three current methods which have been successfully used in Arabidopsis
embryo culture. © 2006 Springer-Verlag Berlin Heidelberg.
alternative_title:
- Plant Cell Monographs
author:
- first_name: Michael
full_name: Sauer, Michael
last_name: Sauer
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Sauer M, Friml J. In vitro culture of Arabidopsis embryos. In: Mujib A, Šamaj
J, eds. Somatic Embryogenesis. Vol 2. Springer; 2006:343-354. doi:10.1007/7089_020'
apa: Sauer, M., & Friml, J. (2006). In vitro culture of Arabidopsis embryos.
In A. Mujib & J. Šamaj (Eds.), Somatic Embryogenesis (Vol. 2, pp. 343–354).
Springer. https://doi.org/10.1007/7089_020
chicago: Sauer, Michael, and Jiří Friml. “In Vitro Culture of Arabidopsis Embryos.”
In Somatic Embryogenesis, edited by Abdul Mujib and Jozef Šamaj, 2:343–54.
Springer, 2006. https://doi.org/10.1007/7089_020.
ieee: M. Sauer and J. Friml, “In vitro culture of Arabidopsis embryos,” in Somatic
Embryogenesis, vol. 2, A. Mujib and J. Šamaj, Eds. Springer, 2006, pp. 343–354.
ista: 'Sauer M, Friml J. 2006.In vitro culture of Arabidopsis embryos. In: Somatic
Embryogenesis. Plant Cell Monographs, vol. 2, 343–354.'
mla: Sauer, Michael, and Jiří Friml. “In Vitro Culture of Arabidopsis Embryos.”
Somatic Embryogenesis, edited by Abdul Mujib and Jozef Šamaj, vol. 2, Springer,
2006, pp. 343–54, doi:10.1007/7089_020.
short: M. Sauer, J. Friml, in:, A. Mujib, J. Šamaj (Eds.), Somatic Embryogenesis,
Springer, 2006, pp. 343–354.
date_created: 2018-12-11T12:00:48Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:40:23Z
day: '01'
doi: 10.1007/7089_020
editor:
- first_name: Abdul
full_name: Mujib, Abdul
last_name: Mujib
- first_name: Jozef
full_name: Šamaj, Jozef
last_name: Šamaj
extern: 1
intvolume: ' 2'
month: '01'
page: 343 - 354
publication: Somatic Embryogenesis
publication_status: published
publisher: Springer
publist_id: '3699'
quality_controlled: 0
status: public
title: In vitro culture of Arabidopsis embryos
type: book_chapter
volume: 2
year: '2006'
...
---
_id: '3012'
abstract:
- lang: eng
text: Intercellular flow of the phytohormone auxin underpins multiple developmental
processes in plants. Plant-specific pin-formed (PIN) proteins and several phosphoglycoprotein
(PGP) transporters are crucial factors in auxin transport-related development,
yet the molecular function of PINs remains unknown. Here, we show that PINs mediate
auxin efflux from mammalian and yeast cells without needing additional plant-specific
factors. Conditional gain-of-function alleles and quantitative measurements of
auxin accumulation in Arabidopsis and tobacco cultured cells revealed that the
action of PINs in auxin efflux is distinct from PGP, rate-limiting, specific to
auxins, and sensitive to auxin transport inhibitors. This suggests a direct involvement
of PINs in catalyzing cellular auxin efflux.
author:
- first_name: Jan
full_name: Petrášek, Jan
last_name: Petrášek
- first_name: Jozef
full_name: Mravec, Jozef
last_name: Mravec
- first_name: Rodolphe
full_name: Bouchard, Rodolphe
last_name: Bouchard
- first_name: Joshua
full_name: Blakeslee, Joshua
last_name: Blakeslee
- first_name: Melinda F
full_name: Melinda Abas
id: 3CFB3B1C-F248-11E8-B48F-1D18A9856A87
last_name: Abas
- first_name: Daniela
full_name: Seifertová, Daniela
last_name: Seifertová
- first_name: Justyna
full_name: Wiśniewska, Justyna
last_name: Wiśniewska
- first_name: Zerihun
full_name: Tadele, Zerihun
last_name: Tadele
- first_name: Martin
full_name: Kubeš, Martin
last_name: Kubeš
- first_name: Milada
full_name: Čovanová, Milada
last_name: Čovanová
- first_name: Pankaj
full_name: Dhonukshe, Pankaj
last_name: Dhonukshe
- first_name: Petr
full_name: Skůpa, Petr
last_name: Skůpa
- first_name: Eva
full_name: Eva Benková
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Lucie
full_name: Perry, Lucie
last_name: Perry
- first_name: Pavel
full_name: Křeček, Pavel
last_name: Křeček
- first_name: Ok
full_name: Lee, Ok Ran
last_name: Lee
- first_name: Gerald
full_name: Fink, Gerald R
last_name: Fink
- first_name: Markus
full_name: Geisler, Markus
last_name: Geisler
- first_name: Angus
full_name: Murphy, Angus S
last_name: Murphy
- first_name: Christian
full_name: Luschnig, Christian
last_name: Luschnig
- first_name: Eva
full_name: Zažímalová, Eva
last_name: Zažímalová
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Petrášek J, Mravec J, Bouchard R, et al. PIN proteins perform a rate-limiting
function in cellular auxin efflux. Science. 2006;312(5775):914-918. doi:10.1126/science.1123542
apa: Petrášek, J., Mravec, J., Bouchard, R., Blakeslee, J., Abas, M. F., Seifertová,
D., … Friml, J. (2006). PIN proteins perform a rate-limiting function in cellular
auxin efflux. Science. American Association for the Advancement of Science.
https://doi.org/10.1126/science.1123542
chicago: Petrášek, Jan, Jozef Mravec, Rodolphe Bouchard, Joshua Blakeslee, Melinda
F Abas, Daniela Seifertová, Justyna Wiśniewska, et al. “PIN Proteins Perform a
Rate-Limiting Function in Cellular Auxin Efflux.” Science. American Association
for the Advancement of Science, 2006. https://doi.org/10.1126/science.1123542.
ieee: J. Petrášek et al., “PIN proteins perform a rate-limiting function
in cellular auxin efflux,” Science, vol. 312, no. 5775. American Association
for the Advancement of Science, pp. 914–918, 2006.
ista: Petrášek J, Mravec J, Bouchard R, Blakeslee J, Abas MF, Seifertová D, Wiśniewska
J, Tadele Z, Kubeš M, Čovanová M, Dhonukshe P, Skůpa P, Benková E, Perry L, Křeček
P, Lee O, Fink G, Geisler M, Murphy A, Luschnig C, Zažímalová E, Friml J. 2006.
PIN proteins perform a rate-limiting function in cellular auxin efflux. Science.
312(5775), 914–918.
mla: Petrášek, Jan, et al. “PIN Proteins Perform a Rate-Limiting Function in Cellular
Auxin Efflux.” Science, vol. 312, no. 5775, American Association for the
Advancement of Science, 2006, pp. 914–18, doi:10.1126/science.1123542.
short: J. Petrášek, J. Mravec, R. Bouchard, J. Blakeslee, M.F. Abas, D. Seifertová,
J. Wiśniewska, Z. Tadele, M. Kubeš, M. Čovanová, P. Dhonukshe, P. Skůpa, E. Benková,
L. Perry, P. Křeček, O. Lee, G. Fink, M. Geisler, A. Murphy, C. Luschnig, E. Zažímalová,
J. Friml, Science 312 (2006) 914–918.
date_created: 2018-12-11T12:00:51Z
date_published: 2006-05-12T00:00:00Z
date_updated: 2021-01-12T07:40:27Z
day: '12'
doi: 10.1126/science.1123542
extern: 1
intvolume: ' 312'
issue: '5775'
month: '05'
page: 914 - 918
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '3690'
quality_controlled: 0
status: public
title: PIN proteins perform a rate-limiting function in cellular auxin efflux
type: journal_article
volume: 312
year: '2006'
...
---
_id: '3010'
abstract:
- lang: eng
text: The formation of the leaf vascular pattern has fascinated biologists for centuries.
In the early leaf primordium, complex networks of procambial cells emerge from
homogeneous subepidermal tissue. The molecular nature of the underlying positional
information is unknown, but various lines of evidence implicate gradually restricted
transport routes of the plant hormone auxin in defining sites of procambium formation.
Here we show that a crucial member of the AtPIN family of auxin-efflux-associated
proteins, AtPIN1, is expressed prior to pre-procambial and procambial cell fate
markers in domains that become restricted toward sites of procambium formation.
Subcellular AtPIN1 polarity indicates that auxin is directed to distinct "convergence
points" in the epidermis, from where it defines the positions of major veins.
Integrated polarities in all emerging veins indicate auxin drainage toward pre-existing
veins, but veins display divergent polarities as they become connected at both
ends. Auxin application and transport inhibition reveal that convergence point
positioning and AtPIN1 expression domain dynamics are self-organizing, auxin-transport-dependent
processes. We derive a model for self-regulated, reiterative patterning of all
vein orders and postulate at its onset a common epidermal auxin-focusing mechanism
for major-vein positioning and phyllotactic patterning.
author:
- first_name: Enrico
full_name: Scarpella, Enrico
last_name: Scarpella
- first_name: Danielle
full_name: Marcos, Danielle
last_name: Marcos
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Thomas
full_name: Berleth, Thomas
last_name: Berleth
citation:
ama: Scarpella E, Marcos D, Friml J, Berleth T. Control of leaf vascular patterning
by polar auxin transport. Genes and Development. 2006;20(8):1015-1027.
doi:10.1101/gad.1402406
apa: Scarpella, E., Marcos, D., Friml, J., & Berleth, T. (2006). Control of
leaf vascular patterning by polar auxin transport. Genes and Development.
Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/gad.1402406
chicago: Scarpella, Enrico, Danielle Marcos, Jiří Friml, and Thomas Berleth. “Control
of Leaf Vascular Patterning by Polar Auxin Transport.” Genes and Development.
Cold Spring Harbor Laboratory Press, 2006. https://doi.org/10.1101/gad.1402406.
ieee: E. Scarpella, D. Marcos, J. Friml, and T. Berleth, “Control of leaf vascular
patterning by polar auxin transport,” Genes and Development, vol. 20, no.
8. Cold Spring Harbor Laboratory Press, pp. 1015–1027, 2006.
ista: Scarpella E, Marcos D, Friml J, Berleth T. 2006. Control of leaf vascular
patterning by polar auxin transport. Genes and Development. 20(8), 1015–1027.
mla: Scarpella, Enrico, et al. “Control of Leaf Vascular Patterning by Polar Auxin
Transport.” Genes and Development, vol. 20, no. 8, Cold Spring Harbor Laboratory
Press, 2006, pp. 1015–27, doi:10.1101/gad.1402406.
short: E. Scarpella, D. Marcos, J. Friml, T. Berleth, Genes and Development 20 (2006)
1015–1027.
date_created: 2018-12-11T12:00:51Z
date_published: 2006-04-15T00:00:00Z
date_updated: 2021-01-12T07:40:26Z
day: '15'
doi: 10.1101/gad.1402406
extern: 1
intvolume: ' 20'
issue: '8'
month: '04'
page: 1015 - 1027
publication: Genes and Development
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
publist_id: '3692'
quality_controlled: 0
status: public
title: Control of leaf vascular patterning by polar auxin transport
type: journal_article
volume: 20
year: '2006'
...
---
_id: '3007'
abstract:
- lang: eng
text: Root gravitropism describes the orientation of root growth along the gravity
vector and is mediated by differential cell elongation in the root meristem. This
response requires the coordinated, asymmetric distribution of the phytohormone
auxin within the root meristem, and depends on the concerted activities of PIN
proteins and AUX1 - members of the auxin transport pathway. Here, we show that
intracellular trafficking and proteasome activity combine to control PIN2 degradation
during root gravitropism. Following gravi-stimulation, proteasome-dependent variations
in PIN2 localization and degradation at the upper and lower sides of the root
result in asymmetric distribution of PIN2. Ubiquitination of PIN2 occurs in a
proteasome-dependent manner, indicating that the proteasome is involved in the
control of PIN2 turnover. Stabilization of PIN2 affects its abundance and distribution,
and leads to defects in auxin distribution and gravitropic responses. We describe
the effects of auxin on PIN2 localization and protein levels, indicating that
redistribution of auxin during the gravitropic response may be involved in the
regulation of PIN2 protein.
author:
- first_name: Lindy
full_name: Abas, Lindy
last_name: Abas
- first_name: René
full_name: Benjamins, René
last_name: Benjamins
- first_name: Nenad
full_name: Malenica, Nenad
last_name: Malenica
- first_name: Tomasz
full_name: Paciorek, Tomasz
last_name: Paciorek
- first_name: Justyna
full_name: Wiśniewska, Justyna
last_name: Wiśniewska
- first_name: Jeanette
full_name: Moulinier-Anzola, Jeanette C
last_name: Moulinier Anzola
- first_name: Tobias
full_name: Sieberer, Tobias
last_name: Sieberer
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Christian
full_name: Luschnig, Christian
last_name: Luschnig
citation:
ama: Abas L, Benjamins R, Malenica N, et al. Intracellular trafficking and proteolysis
of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism.
Nature Cell Biology. 2006;8(3):249-256. doi:10.1038/ncb1369
apa: Abas, L., Benjamins, R., Malenica, N., Paciorek, T., Wiśniewska, J., Moulinier
Anzola, J., … Luschnig, C. (2006). Intracellular trafficking and proteolysis of
the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism.
Nature Cell Biology. Nature Publishing Group. https://doi.org/10.1038/ncb1369
chicago: Abas, Lindy, René Benjamins, Nenad Malenica, Tomasz Paciorek, Justyna Wiśniewska,
Jeanette Moulinier Anzola, Tobias Sieberer, Jiří Friml, and Christian Luschnig.
“Intracellular Trafficking and Proteolysis of the Arabidopsis Auxin-Efflux Facilitator
PIN2 Are Involved in Root Gravitropism.” Nature Cell Biology. Nature Publishing
Group, 2006. https://doi.org/10.1038/ncb1369.
ieee: L. Abas et al., “Intracellular trafficking and proteolysis of the Arabidopsis
auxin-efflux facilitator PIN2 are involved in root gravitropism,” Nature Cell
Biology, vol. 8, no. 3. Nature Publishing Group, pp. 249–256, 2006.
ista: Abas L, Benjamins R, Malenica N, Paciorek T, Wiśniewska J, Moulinier Anzola
J, Sieberer T, Friml J, Luschnig C. 2006. Intracellular trafficking and proteolysis
of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism.
Nature Cell Biology. 8(3), 249–256.
mla: Abas, Lindy, et al. “Intracellular Trafficking and Proteolysis of the Arabidopsis
Auxin-Efflux Facilitator PIN2 Are Involved in Root Gravitropism.” Nature Cell
Biology, vol. 8, no. 3, Nature Publishing Group, 2006, pp. 249–56, doi:10.1038/ncb1369.
short: L. Abas, R. Benjamins, N. Malenica, T. Paciorek, J. Wiśniewska, J. Moulinier
Anzola, T. Sieberer, J. Friml, C. Luschnig, Nature Cell Biology 8 (2006) 249–256.
date_created: 2018-12-11T12:00:50Z
date_published: 2006-03-01T00:00:00Z
date_updated: 2021-01-12T07:40:25Z
day: '01'
doi: 10.1038/ncb1369
extern: 1
intvolume: ' 8'
issue: '3'
month: '03'
page: 249 - 256
publication: Nature Cell Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '3694'
quality_controlled: 0
status: public
title: Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator
PIN2 are involved in root gravitropism
type: journal_article
volume: 8
year: '2006'
...
---
_id: '3006'
abstract:
- lang: eng
text: 'Dividing plant cells perform a remarkable task of building a new cell wall
within the cytoplasm in a few minutes. A long-standing paradigm claims that this
primordial cell wall, known as the cell plate, is generated by delivery of newly
synthesized material from Golgi apparatus-originated secretory vesicles. Here,
we show that, in diverse plant species, cell surface material, including plasma
membrane proteins, cell wall components, and exogenously applied endocytic tracers,
is rapidly delivered to the forming cell plate. Importantly, this occurs even
when de novo protein synthesis is blocked. In addition, cytokinesis-specific syntaxin
KNOLLE as well as plasma membrane (PM) resident proteins localize to endosomes
that fuse to initiate the cell plate. The rate of endocytosis is strongly enhanced
during cell plate formation, and its genetic or pharmacological inhibition leads
to cytokinesis defects. Our results reveal that endocytic delivery of cell surface
material significantly contributes to cell plate formation during plant cytokinesis. '
author:
- first_name: Pankaj
full_name: Dhonukshe, Pankaj
last_name: Dhonukshe
- first_name: František
full_name: Baluška, František
last_name: Baluška
- first_name: Markus
full_name: Schlicht, Markus
last_name: Schlicht
- first_name: Andrej
full_name: Hlavacka, Andrej
last_name: Hlavacka
- first_name: Jozef
full_name: Šamaj, Jozef
last_name: Šamaj
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Theodorus
full_name: Gadella, Theodorus W
last_name: Gadella
citation:
ama: Dhonukshe P, Baluška F, Schlicht M, et al. Endocytosis of cell surface material
mediates cell plate formation during plant cytokinesis. Developmental Cell.
2006;10(1):137-150. doi:10.1016/j.devcel.2005.11.015
apa: Dhonukshe, P., Baluška, F., Schlicht, M., Hlavacka, A., Šamaj, J., Friml, J.,
& Gadella, T. (2006). Endocytosis of cell surface material mediates cell plate
formation during plant cytokinesis. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2005.11.015
chicago: Dhonukshe, Pankaj, František Baluška, Markus Schlicht, Andrej Hlavacka,
Jozef Šamaj, Jiří Friml, and Theodorus Gadella. “Endocytosis of Cell Surface Material
Mediates Cell Plate Formation during Plant Cytokinesis.” Developmental Cell.
Cell Press, 2006. https://doi.org/10.1016/j.devcel.2005.11.015.
ieee: P. Dhonukshe et al., “Endocytosis of cell surface material mediates
cell plate formation during plant cytokinesis,” Developmental Cell, vol.
10, no. 1. Cell Press, pp. 137–150, 2006.
ista: Dhonukshe P, Baluška F, Schlicht M, Hlavacka A, Šamaj J, Friml J, Gadella
T. 2006. Endocytosis of cell surface material mediates cell plate formation during
plant cytokinesis. Developmental Cell. 10(1), 137–150.
mla: Dhonukshe, Pankaj, et al. “Endocytosis of Cell Surface Material Mediates Cell
Plate Formation during Plant Cytokinesis.” Developmental Cell, vol. 10,
no. 1, Cell Press, 2006, pp. 137–50, doi:10.1016/j.devcel.2005.11.015.
short: P. Dhonukshe, F. Baluška, M. Schlicht, A. Hlavacka, J. Šamaj, J. Friml, T.
Gadella, Developmental Cell 10 (2006) 137–150.
date_created: 2018-12-11T12:00:49Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:40:24Z
day: '01'
doi: 10.1016/j.devcel.2005.11.015
extern: 1
intvolume: ' 10'
issue: '1'
month: '01'
page: 137 - 150
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '3696'
quality_controlled: 0
status: public
title: Endocytosis of cell surface material mediates cell plate formation during plant
cytokinesis
type: journal_article
volume: 10
year: '2006'
...
---
_id: '3011'
abstract:
- lang: eng
text: Polar flow of the phytohormone auxin requires plasma membrane‐associated PIN
proteins and underlies multiple developmental processes in plants. Here we address
the importance of the polarity of subcellular PIN localization for the directionality
of auxin transport in Arabidopsis thaliana. Expression of different PINs in the
root epidermis revealed the importance of PIN polar positions for directional
auxin flow and root gravitropic growth. Interfering with sequence-embedded polarity
signals directly demonstrates that PIN polarity is a primary factor in determining
the direction of auxin flow in meristematic tissues. This finding provides a crucial
piece in the puzzle of how auxin flow can be redirected via rapid changes in PIN
polarity.
author:
- first_name: Justyna
full_name: Wiśniewska, Justyna
last_name: Wiśniewska
- first_name: Jian
full_name: Xu, Jian
last_name: Xu
- first_name: Daniela
full_name: Seifertová, Daniela
last_name: Seifertová
- first_name: Philip
full_name: Brewer, Philip B
last_name: Brewer
- first_name: Kamil
full_name: Růžička, Kamil
last_name: Růžička
- first_name: Ikram
full_name: Blilou, Ikram
last_name: Blilou
- first_name: David
full_name: Rouquié, David
last_name: Rouquié
- first_name: Eva
full_name: Eva Benková
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Ben
full_name: Scheres, Ben
last_name: Scheres
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Wiśniewska J, Xu J, Seifertová D, et al. Polar PIN localization directs auxin
flow in plants. Science. 2006;312(5775). doi:10.1126/science.1121356
apa: Wiśniewska, J., Xu, J., Seifertová, D., Brewer, P., Růžička, K., Blilou, I.,
… Friml, J. (2006). Polar PIN localization directs auxin flow in plants. Science.
American Association for the Advancement of Science. https://doi.org/10.1126/science.1121356
chicago: Wiśniewska, Justyna, Jian Xu, Daniela Seifertová, Philip Brewer, Kamil
Růžička, Ikram Blilou, David Rouquié, Eva Benková, Ben Scheres, and Jiří Friml.
“Polar PIN Localization Directs Auxin Flow in Plants.” Science. American
Association for the Advancement of Science, 2006. https://doi.org/10.1126/science.1121356.
ieee: J. Wiśniewska et al., “Polar PIN localization directs auxin flow in
plants,” Science, vol. 312, no. 5775. American Association for the Advancement
of Science, 2006.
ista: Wiśniewska J, Xu J, Seifertová D, Brewer P, Růžička K, Blilou I, Rouquié D,
Benková E, Scheres B, Friml J. 2006. Polar PIN localization directs auxin flow
in plants. Science. 312(5775).
mla: Wiśniewska, Justyna, et al. “Polar PIN Localization Directs Auxin Flow in Plants.”
Science, vol. 312, no. 5775, American Association for the Advancement of
Science, 2006, doi:10.1126/science.1121356.
short: J. Wiśniewska, J. Xu, D. Seifertová, P. Brewer, K. Růžička, I. Blilou, D.
Rouquié, E. Benková, B. Scheres, J. Friml, Science 312 (2006).
date_created: 2018-12-11T12:00:51Z
date_published: 2006-05-12T00:00:00Z
date_updated: 2021-01-12T07:40:27Z
day: '12'
doi: 10.1126/science.1121356
extern: 1
intvolume: ' 312'
issue: '5775'
month: '05'
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '3691'
quality_controlled: 0
status: public
title: Polar PIN localization directs auxin flow in plants
type: journal_article
volume: 312
year: '2006'
...
---
_id: '3005'
author:
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Philip
full_name: Benfey, Philip
last_name: Benfey
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Malcolm
full_name: Bennett, Malcolm
last_name: Bennett
- first_name: Thomas
full_name: Berleth, Thomas
last_name: Berleth
- first_name: Niko
full_name: Geldner, Niko
last_name: Geldner
- first_name: Markus
full_name: Grebe, Markus
last_name: Grebe
- first_name: Marcus
full_name: Heisler, Marcus
last_name: Heisler
- first_name: Jan
full_name: Hejátko, Jan
last_name: Hejátko
- first_name: Gerd
full_name: Jürgens, Gerd
last_name: Jürgens
- first_name: Thomas
full_name: Laux, Thomas
last_name: Laux
- first_name: Keith
full_name: Lindsey, Keith
last_name: Lindsey
- first_name: Wolfgang
full_name: Lukowitz, Wolfgang
last_name: Lukowitz
- first_name: Christian
full_name: Luschnig, Christian
last_name: Luschnig
- first_name: Remko
full_name: Offringa, Remko
last_name: Offringa
- first_name: Ben
full_name: Scheres, Ben
last_name: Scheres
- first_name: Ranjan
full_name: Swarup, Ranjan
last_name: Swarup
- first_name: Ramón
full_name: Torres Ruiz, Ramón
last_name: Torres Ruiz
- first_name: Dolf
full_name: Weijers, Dolf
last_name: Weijers
- first_name: Eva
full_name: Zažímalová, Eva
last_name: Zažímalová
citation:
ama: 'Friml J, Benfey P, Benková E, et al. Apical-basal polarity: Why plant cells
don’t stand on their heads. Trends in Plant Science. 2006;11(1):12-14.
doi:10.1016/j.tplants.2005.11.010'
apa: 'Friml, J., Benfey, P., Benková, E., Bennett, M., Berleth, T., Geldner, N.,
… Zažímalová, E. (2006). Apical-basal polarity: Why plant cells don’t stand on
their heads. Trends in Plant Science. Cell Press. https://doi.org/10.1016/j.tplants.2005.11.010'
chicago: 'Friml, Jiří, Philip Benfey, Eva Benková, Malcolm Bennett, Thomas Berleth,
Niko Geldner, Markus Grebe, et al. “Apical-Basal Polarity: Why Plant Cells Don’t
Stand on Their Heads.” Trends in Plant Science. Cell Press, 2006. https://doi.org/10.1016/j.tplants.2005.11.010.'
ieee: 'J. Friml et al., “Apical-basal polarity: Why plant cells don’t stand
on their heads,” Trends in Plant Science, vol. 11, no. 1. Cell Press, pp.
12–14, 2006.'
ista: 'Friml J, Benfey P, Benková E, Bennett M, Berleth T, Geldner N, Grebe M, Heisler
M, Hejátko J, Jürgens G, Laux T, Lindsey K, Lukowitz W, Luschnig C, Offringa R,
Scheres B, Swarup R, Torres Ruiz R, Weijers D, Zažímalová E. 2006. Apical-basal
polarity: Why plant cells don’t stand on their heads. Trends in Plant Science.
11(1), 12–14.'
mla: 'Friml, Jiří, et al. “Apical-Basal Polarity: Why Plant Cells Don’t Stand on
Their Heads.” Trends in Plant Science, vol. 11, no. 1, Cell Press, 2006,
pp. 12–14, doi:10.1016/j.tplants.2005.11.010.'
short: J. Friml, P. Benfey, E. Benková, M. Bennett, T. Berleth, N. Geldner, M. Grebe,
M. Heisler, J. Hejátko, G. Jürgens, T. Laux, K. Lindsey, W. Lukowitz, C. Luschnig,
R. Offringa, B. Scheres, R. Swarup, R. Torres Ruiz, D. Weijers, E. Zažímalová,
Trends in Plant Science 11 (2006) 12–14.
date_created: 2018-12-11T12:00:49Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:40:24Z
day: '01'
doi: 10.1016/j.tplants.2005.11.010
extern: '1'
intvolume: ' 11'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 12 - 14
publication: Trends in Plant Science
publication_status: published
publisher: Cell Press
publist_id: '3697'
status: public
title: 'Apical-basal polarity: Why plant cells don''t stand on their heads'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2006'
...
---
_id: '3008'
abstract:
- lang: eng
text: Plants and some animals have a profound capacity to regenerate organs from
adult tissues. Molecular mechanisms for regeneration have, however, been largely
unexplored. Here we investigate a local regeneration response in Arabidopsis roots.
Laser-induced wounding disrupts the flow of auxin-a cell-fate-instructive plant
hormone-in root tips, and we demonstrate that resulting cell-fate changes require
the PLETHORA, SHORTROOT, and SCARECROW transcription factors. These transcription
factors regulate the expression and polar position of PIN auxin efflux-facilitating
membrane proteins to reconstitute auxin transport in renewed root tips. Thus,
a regeneration mechanism using embryonic root stem-cell patterning factors first
responds to and subsequently stabilizes a new hormone distribution.
author:
- first_name: Jian
full_name: Xu, Jian
last_name: Xu
- first_name: Hugo
full_name: Hofhuis, Hugo
last_name: Hofhuis
- first_name: Renze
full_name: Heidstra, Renze
last_name: Heidstra
- first_name: Michael
full_name: Sauer, Michael
last_name: Sauer
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Ben
full_name: Scheres, Ben
last_name: Scheres
citation:
ama: Xu J, Hofhuis H, Heidstra R, Sauer M, Friml J, Scheres B. A molecular framework
for plant regeneration. Science. 2006;311(5759):385-388. doi:10.1126/science.1121790
apa: Xu, J., Hofhuis, H., Heidstra, R., Sauer, M., Friml, J., & Scheres, B.
(2006). A molecular framework for plant regeneration. Science. American
Association for the Advancement of Science. https://doi.org/10.1126/science.1121790
chicago: Xu, Jian, Hugo Hofhuis, Renze Heidstra, Michael Sauer, Jiří Friml, and
Ben Scheres. “A Molecular Framework for Plant Regeneration.” Science. American
Association for the Advancement of Science, 2006. https://doi.org/10.1126/science.1121790.
ieee: J. Xu, H. Hofhuis, R. Heidstra, M. Sauer, J. Friml, and B. Scheres, “A molecular
framework for plant regeneration,” Science, vol. 311, no. 5759. American
Association for the Advancement of Science, pp. 385–388, 2006.
ista: Xu J, Hofhuis H, Heidstra R, Sauer M, Friml J, Scheres B. 2006. A molecular
framework for plant regeneration. Science. 311(5759), 385–388.
mla: Xu, Jian, et al. “A Molecular Framework for Plant Regeneration.” Science,
vol. 311, no. 5759, American Association for the Advancement of Science, 2006,
pp. 385–88, doi:10.1126/science.1121790.
short: J. Xu, H. Hofhuis, R. Heidstra, M. Sauer, J. Friml, B. Scheres, Science 311
(2006) 385–388.
date_created: 2018-12-11T12:00:50Z
date_published: 2006-01-20T00:00:00Z
date_updated: 2021-01-12T07:40:25Z
day: '20'
doi: 10.1126/science.1121790
extern: 1
intvolume: ' 311'
issue: '5759'
month: '01'
page: 385 - 388
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '3695'
quality_controlled: 0
status: public
title: A molecular framework for plant regeneration
type: journal_article
volume: 311
year: '2006'
...
---
_id: '3009'
author:
- first_name: Tomasz
full_name: Paciorek, Tomasz
last_name: Paciorek
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Paciorek T, Friml J. Auxin signaling. Journal of Cell Science. 2006;119(7):1199-1202.
doi:10.1242/jcs.02910
apa: Paciorek, T., & Friml, J. (2006). Auxin signaling. Journal of Cell Science.
Company of Biologists. https://doi.org/10.1242/jcs.02910
chicago: Paciorek, Tomasz, and Jiří Friml. “Auxin Signaling.” Journal of Cell
Science. Company of Biologists, 2006. https://doi.org/10.1242/jcs.02910.
ieee: T. Paciorek and J. Friml, “Auxin signaling,” Journal of Cell Science,
vol. 119, no. 7. Company of Biologists, pp. 1199–1202, 2006.
ista: Paciorek T, Friml J. 2006. Auxin signaling. Journal of Cell Science. 119(7),
1199–1202.
mla: Paciorek, Tomasz, and Jiří Friml. “Auxin Signaling.” Journal of Cell Science,
vol. 119, no. 7, Company of Biologists, 2006, pp. 1199–202, doi:10.1242/jcs.02910.
short: T. Paciorek, J. Friml, Journal of Cell Science 119 (2006) 1199–1202.
date_created: 2018-12-11T12:00:50Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:40:25Z
day: '01'
doi: 10.1242/jcs.02910
extern: '1'
external_id:
pmid:
- ' 16554435'
intvolume: ' 119'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/16554435
month: '01'
oa: 1
oa_version: Published Version
page: 1199 - 1202
pmid: 1
publication: Journal of Cell Science
publication_status: published
publisher: Company of Biologists
publist_id: '3693'
quality_controlled: '1'
status: public
title: Auxin signaling
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 119
year: '2006'
...
---
_id: '3016'
abstract:
- lang: eng
text: Plant development is characterized by a profound ability to regenerate and
form tissues with new axes of polarity. An unsolved question concerns how the
position within a tissue and cues from neighboring cells are integrated to specify
the polarity of individual cells. The canalization hypothesis proposes a feedback
effect of the phytohormone auxin on the directionality of intercellular auxin
flow as a means to polarize tissues. Here we identify a cellular and molecular
mechanism for canalization. Local auxin application, wounding, or auxin accumulation
during de novo organ formation lead to rearrangements in the subcellular polar
localization of PIN auxin transport components. This auxin effect on PIN polarity
is cell-specific, does not depend on PIN transcription, and involves the Aux/IAA-ARF
(indole-3-acetic acid-auxin response factor) signaling pathway. Our data suggest
that auxin acts as polarizing cue, which links individual cell polarity with tissue
and organ polarity through control of PIN polar targeting. This feedback regulation
provides a conceptual framework for polarization during multiple regenerative
and patterning processes in plants.
article_processing_charge: No
author:
- first_name: Michael
full_name: Sauer, Michael
last_name: Sauer
- first_name: Jozef
full_name: Balla, Jozef
last_name: Balla
- first_name: Christian
full_name: Luschnig, Christian
last_name: Luschnig
- first_name: Justyna
full_name: Wiśniewska, Justyna
last_name: Wiśniewska
- first_name: Vilém
full_name: Reinöhl, Vilém
last_name: Reinöhl
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: Sauer M, Balla J, Luschnig C, et al. Canalization of auxin flow by Aux/IAA-ARF-dependent
feedback regulation of PIN polarity. Genes and Development. 2006;20(20):2902-2911.
doi:10.1101/gad.390806
apa: Sauer, M., Balla, J., Luschnig, C., Wiśniewska, J., Reinöhl, V., Friml, J.,
& Benková, E. (2006). Canalization of auxin flow by Aux/IAA-ARF-dependent
feedback regulation of PIN polarity. Genes and Development. Cold Spring
Harbor Laboratory Press. https://doi.org/10.1101/gad.390806
chicago: Sauer, Michael, Jozef Balla, Christian Luschnig, Justyna Wiśniewska, Vilém
Reinöhl, Jiří Friml, and Eva Benková. “Canalization of Auxin Flow by Aux/IAA-ARF-Dependent
Feedback Regulation of PIN Polarity.” Genes and Development. Cold Spring
Harbor Laboratory Press, 2006. https://doi.org/10.1101/gad.390806.
ieee: M. Sauer et al., “Canalization of auxin flow by Aux/IAA-ARF-dependent
feedback regulation of PIN polarity,” Genes and Development, vol. 20, no.
20. Cold Spring Harbor Laboratory Press, pp. 2902–2911, 2006.
ista: Sauer M, Balla J, Luschnig C, Wiśniewska J, Reinöhl V, Friml J, Benková E.
2006. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation
of PIN polarity. Genes and Development. 20(20), 2902–2911.
mla: Sauer, Michael, et al. “Canalization of Auxin Flow by Aux/IAA-ARF-Dependent
Feedback Regulation of PIN Polarity.” Genes and Development, vol. 20, no.
20, Cold Spring Harbor Laboratory Press, 2006, pp. 2902–11, doi:10.1101/gad.390806.
short: M. Sauer, J. Balla, C. Luschnig, J. Wiśniewska, V. Reinöhl, J. Friml, E.
Benková, Genes and Development 20 (2006) 2902–2911.
date_created: 2018-12-11T12:00:53Z
date_published: 2006-10-15T00:00:00Z
date_updated: 2021-11-16T07:53:09Z
day: '15'
doi: 10.1101/gad.390806
extern: '1'
intvolume: ' 20'
issue: '20'
language:
- iso: eng
month: '10'
oa_version: None
page: 2902 - 2911
publication: Genes and Development
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
publist_id: '3686'
related_material:
link:
- relation: erratum
url: http://genesdev.cshlp.org/content/21/11/1431.short
status: public
title: Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of
PIN polarity
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2006'
...
---
_id: '3017'
abstract:
- lang: eng
text: The plant hormone auxin plays crucial roles in regulating plant growth development,
including embryo and root patterning, organ formation, vascular tissue differentiation
and growth responses to environmental stimuli. Asymmetric auxin distribution patterns
have been observed within tissues, and these so-called auxin gradients change
dynamically during different developmental processes. Most auxin is synthesized
in the shoot and distributed directionally throughout the plant. This polar auxin
transport is mediated by auxin influx and efflux facilitators, whose subcellular
polar localizations guide the direction of auxin flow. The polar localization
of PIN auxin efflux carriers changes in response to developmental and external
cues in order to channel auxin flow in a regulated manner for organized growth.
Auxin itself modulates the expression and subcellular localization of PIN proteins,
contributing to a complex pattern of feedback regulation. Here we review the available
information mainly from studies of a model plant, Arabidopsis thaliana, on the
generation of auxin gradients, the regulation of polar auxin transport and further
downstream cellular events.
author:
- first_name: Hirokazu
full_name: Tanaka, Hirokazu
last_name: Tanaka
- first_name: Pankaj
full_name: Dhonukshe, Pankaj
last_name: Dhonukshe
- first_name: Philip
full_name: Brewer, Philip
last_name: Brewer
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Tanaka H, Dhonukshe P, Brewer P, Friml J. Spatiotemporal asymmetric auxin
distribution: A means to coordinate plant development. Cellular and Molecular
Life Sciences. 2006;63(23):2738-2754. doi:10.1007/s00018-006-6116-5'
apa: 'Tanaka, H., Dhonukshe, P., Brewer, P., & Friml, J. (2006). Spatiotemporal
asymmetric auxin distribution: A means to coordinate plant development. Cellular
and Molecular Life Sciences. Birkhäuser. https://doi.org/10.1007/s00018-006-6116-5'
chicago: 'Tanaka, Hirokazu, Pankaj Dhonukshe, Philip Brewer, and Jiří Friml. “Spatiotemporal
Asymmetric Auxin Distribution: A Means to Coordinate Plant Development.” Cellular
and Molecular Life Sciences. Birkhäuser, 2006. https://doi.org/10.1007/s00018-006-6116-5.'
ieee: 'H. Tanaka, P. Dhonukshe, P. Brewer, and J. Friml, “Spatiotemporal asymmetric
auxin distribution: A means to coordinate plant development,” Cellular and
Molecular Life Sciences, vol. 63, no. 23. Birkhäuser, pp. 2738–2754, 2006.'
ista: 'Tanaka H, Dhonukshe P, Brewer P, Friml J. 2006. Spatiotemporal asymmetric
auxin distribution: A means to coordinate plant development. Cellular and Molecular
Life Sciences. 63(23), 2738–2754.'
mla: 'Tanaka, Hirokazu, et al. “Spatiotemporal Asymmetric Auxin Distribution: A
Means to Coordinate Plant Development.” Cellular and Molecular Life Sciences,
vol. 63, no. 23, Birkhäuser, 2006, pp. 2738–54, doi:10.1007/s00018-006-6116-5.'
short: H. Tanaka, P. Dhonukshe, P. Brewer, J. Friml, Cellular and Molecular Life
Sciences 63 (2006) 2738–2754.
date_created: 2018-12-11T12:00:53Z
date_published: 2006-12-01T00:00:00Z
date_updated: 2021-01-12T07:40:29Z
day: '01'
doi: 10.1007/s00018-006-6116-5
extern: '1'
intvolume: ' 63'
issue: '23'
language:
- iso: eng
month: '12'
oa_version: None
page: 2738 - 2754
publication: Cellular and Molecular Life Sciences
publication_status: published
publisher: Birkhäuser
publist_id: '3685'
quality_controlled: '1'
status: public
title: 'Spatiotemporal asymmetric auxin distribution: A means to coordinate plant
development'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 63
year: '2006'
...
---
_id: '3018'
abstract:
- lang: eng
text: The directional flow of the plant hormone auxin mediates multiple developmental
processes, including patterning and tropisms. Apical and basal plasma membrane
localization of AUXIN-RESISTANT1 (AUX1) and PIN-FORMED1 (PIN1) auxin transport
components underpins the directionality of intercellular auxin flow in Arabidopsis
thaliana roots. Here, we examined the mechanism of polar trafficking of AUX1.
Real-time live cell analysis along with subcellular markers revealed that AUX1
resides at the apical plasma membrane of protophloem cells and at highly dynamic
subpopulations of Golgi apparatus and endosomes in all cell types. Plasma membrane
and intracellular pools of AUX1 are interconnected by actin-dependent constitutive
trafficking, which is not sensitive to the vesicle trafficking inhibitor brefeldin
A. AUX1 subcellular dynamics are not influenced by the auxin influx inhibitor
NOA but are blocked by the auxin efflux inhibitors TIBA and PBA. Furthermore,
auxin transport inhibitors and interference with the sterol composition of membranes
disrupt polar AUX1 distribution at the plasma membrane. Compared with PIN1 trafficking,
AUX1 dynamics display different sensitivities to trafficking inhibitors and are
independent of the endosomal trafficking regulator ARF GEF GNOM. Hence, AUX1 uses
a novel trafficking pathway in plants that is distinct from PIN trafficking, providing
an additional mechanism for the fine regulation of auxin transport.
author:
- first_name: Jürgen
full_name: Kleine-Vehn, Jürgen
last_name: Kleine Vehn
- first_name: Pankaj
full_name: Dhonukshe, Pankaj
last_name: Dhonukshe
- first_name: Ranjan
full_name: Swarup, Ranjan
last_name: Swarup
- first_name: Malcolm
full_name: Bennett, Malcolm
last_name: Bennett
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Kleine Vehn J, Dhonukshe P, Swarup R, Bennett M, Friml J. Subcellular trafficking
of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from
PIN1. Plant Cell. 2006;18(11):3171-3181. doi:10.1105/tpc.106.042770
apa: Kleine Vehn, J., Dhonukshe, P., Swarup, R., Bennett, M., & Friml, J. (2006).
Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel
pathway distinct from PIN1. Plant Cell. American Society of Plant Biologists.
https://doi.org/10.1105/tpc.106.042770
chicago: Kleine Vehn, Jürgen, Pankaj Dhonukshe, Ranjan Swarup, Malcolm Bennett,
and Jiří Friml. “Subcellular Trafficking of the Arabidopsis Auxin Influx Carrier
AUX1 Uses a Novel Pathway Distinct from PIN1.” Plant Cell. American Society
of Plant Biologists, 2006. https://doi.org/10.1105/tpc.106.042770.
ieee: J. Kleine Vehn, P. Dhonukshe, R. Swarup, M. Bennett, and J. Friml, “Subcellular
trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway
distinct from PIN1,” Plant Cell, vol. 18, no. 11. American Society of Plant
Biologists, pp. 3171–3181, 2006.
ista: Kleine Vehn J, Dhonukshe P, Swarup R, Bennett M, Friml J. 2006. Subcellular
trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway
distinct from PIN1. Plant Cell. 18(11), 3171–3181.
mla: Kleine Vehn, Jürgen, et al. “Subcellular Trafficking of the Arabidopsis Auxin
Influx Carrier AUX1 Uses a Novel Pathway Distinct from PIN1.” Plant Cell,
vol. 18, no. 11, American Society of Plant Biologists, 2006, pp. 3171–81, doi:10.1105/tpc.106.042770.
short: J. Kleine Vehn, P. Dhonukshe, R. Swarup, M. Bennett, J. Friml, Plant Cell
18 (2006) 3171–3181.
date_created: 2018-12-11T12:00:53Z
date_published: 2006-11-01T00:00:00Z
date_updated: 2021-01-12T07:40:29Z
day: '01'
doi: 10.1105/tpc.106.042770
extern: 1
intvolume: ' 18'
issue: '11'
month: '11'
page: 3171 - 3181
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3684'
quality_controlled: 0
status: public
title: Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a
novel pathway distinct from PIN1
type: journal_article
volume: 18
year: '2006'
...
---
_id: '3020'
abstract:
- lang: eng
text: High throughput microarray transcription analyses provide us with the expression
profiles for large amounts of plant genes. However, their tissue and cellular
resolution is limited. Thus, for detailed functional analysis, it is still necessary
to examine the expression pattern of selected candidate genes at a cellular level.
Here, we present an in situ mRNA hybridization method that is routinely used for
the analysis of plant gene expression patterns. The protocol is optimized for
whole mount mRNA localizations in Arabidopsis seedling tissues including embryos,
roots, hypocotyls and young primary leaves. It can also be used for comparable
tissues in other species. Part of the protocol can also be automated and performed
by a liquid handling robot. Here we present a detailed protocol, recommended controls
and troubleshooting, along with examples of several applications. The total time
to carry out the entire procedure is ∼7 d, depending on the tissue used.
author:
- first_name: Jan
full_name: Hejátko, Jan
last_name: Hejátko
- first_name: Ikram
full_name: Blilou, Ikram
last_name: Blilou
- first_name: Philip
full_name: Brewer, Philip B
last_name: Brewer
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Ben
full_name: Scheres, Ben
last_name: Scheres
- first_name: Eva
full_name: Eva Benková
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: Hejátko J, Blilou I, Brewer P, Friml J, Scheres B, Benková E. In situ hybridization
technique for mRNA detection in whole mount Arabidopsis samples. Nature Protocols.
2006;1(4):1939-1946. doi:10.1038/nprot.2006.333
apa: Hejátko, J., Blilou, I., Brewer, P., Friml, J., Scheres, B., & Benková,
E. (2006). In situ hybridization technique for mRNA detection in whole mount Arabidopsis
samples. Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/nprot.2006.333
chicago: Hejátko, Jan, Ikram Blilou, Philip Brewer, Jiří Friml, Ben Scheres, and
Eva Benková. “In Situ Hybridization Technique for MRNA Detection in Whole Mount
Arabidopsis Samples.” Nature Protocols. Nature Publishing Group, 2006.
https://doi.org/10.1038/nprot.2006.333.
ieee: J. Hejátko, I. Blilou, P. Brewer, J. Friml, B. Scheres, and E. Benková, “In
situ hybridization technique for mRNA detection in whole mount Arabidopsis samples,”
Nature Protocols, vol. 1, no. 4. Nature Publishing Group, pp. 1939–1946,
2006.
ista: Hejátko J, Blilou I, Brewer P, Friml J, Scheres B, Benková E. 2006. In situ
hybridization technique for mRNA detection in whole mount Arabidopsis samples.
Nature Protocols. 1(4), 1939–1946.
mla: Hejátko, Jan, et al. “In Situ Hybridization Technique for MRNA Detection in
Whole Mount Arabidopsis Samples.” Nature Protocols, vol. 1, no. 4, Nature
Publishing Group, 2006, pp. 1939–46, doi:10.1038/nprot.2006.333.
short: J. Hejátko, I. Blilou, P. Brewer, J. Friml, B. Scheres, E. Benková, Nature
Protocols 1 (2006) 1939–1946.
date_created: 2018-12-11T12:00:54Z
date_published: 2006-11-01T00:00:00Z
date_updated: 2021-01-12T07:40:30Z
day: '01'
doi: 10.1038/nprot.2006.333
extern: 1
intvolume: ' 1'
issue: '4'
month: '11'
page: 1939 - 1946
publication: Nature Protocols
publication_status: published
publisher: Nature Publishing Group
publist_id: '3683'
quality_controlled: 0
status: public
title: In situ hybridization technique for mRNA detection in whole mount Arabidopsis
samples
type: journal_article
volume: 1
year: '2006'
...
---
_id: '3015'
abstract:
- lang: eng
text: 'As the field of plant molecular biology is swiftly advancing, a need has
been created for methods that allow rapid and reliable in situ localization of
proteins in plant cells. Here we describe a whole-mount ''immunolocalization''
technique for various plant tissues, including roots, hypocotyls, cotyledons,
young primary leaves and embryos of Arabidopsis thaliana and other species. The
detailed protocol, recommended controls and troubleshooting are presented, along
with examples of applications. The protocol consists of five main procedures:
tissue fixation, tissue permeation, blocking, primary and secondary antibody incubation.
Notably, the first procedure (tissue fixation) includes several steps (4-12) that
are absolutely necessary for protein localization in hypocotyls, cotyledons and
young primary leaves but should be omitted for other tissues. The protocol is
usually done in 3 days, but could also be completed in 2 days.'
author:
- first_name: Michael
full_name: Sauer, Michael
last_name: Sauer
- first_name: Tomasz
full_name: Paciorek, Tomasz
last_name: Paciorek
- first_name: Eva
full_name: Eva Benková
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Sauer M, Paciorek T, Benková E, Friml J. Immunocytochemical techniques for
whole mount in situ protein localization in plants. Nature Protocols. 2006;1(1):98-103.
doi:10.1038/nprot.2006.15
apa: Sauer, M., Paciorek, T., Benková, E., & Friml, J. (2006). Immunocytochemical
techniques for whole mount in situ protein localization in plants. Nature Protocols.
Nature Publishing Group. https://doi.org/10.1038/nprot.2006.15
chicago: Sauer, Michael, Tomasz Paciorek, Eva Benková, and Jiří Friml. “Immunocytochemical
Techniques for Whole Mount in Situ Protein Localization in Plants.” Nature
Protocols. Nature Publishing Group, 2006. https://doi.org/10.1038/nprot.2006.15.
ieee: M. Sauer, T. Paciorek, E. Benková, and J. Friml, “Immunocytochemical techniques
for whole mount in situ protein localization in plants,” Nature Protocols,
vol. 1, no. 1. Nature Publishing Group, pp. 98–103, 2006.
ista: Sauer M, Paciorek T, Benková E, Friml J. 2006. Immunocytochemical techniques
for whole mount in situ protein localization in plants. Nature Protocols. 1(1),
98–103.
mla: Sauer, Michael, et al. “Immunocytochemical Techniques for Whole Mount in Situ
Protein Localization in Plants.” Nature Protocols, vol. 1, no. 1, Nature
Publishing Group, 2006, pp. 98–103, doi:10.1038/nprot.2006.15.
short: M. Sauer, T. Paciorek, E. Benková, J. Friml, Nature Protocols 1 (2006) 98–103.
date_created: 2018-12-11T12:00:52Z
date_published: 2006-06-01T00:00:00Z
date_updated: 2021-01-12T07:40:28Z
day: '01'
doi: 10.1038/nprot.2006.15
extern: 1
intvolume: ' 1'
issue: '1'
month: '06'
page: 98 - 103
publication: Nature Protocols
publication_status: published
publisher: Nature Publishing Group
publist_id: '3688'
quality_controlled: 0
status: public
title: Immunocytochemical techniques for whole mount in situ protein localization
in plants
type: journal_article
volume: 1
year: '2006'
...
---
_id: '3013'
abstract:
- lang: eng
text: 'There is a growing demand for methods that allow rapid and reliable in situ
localization of proteins in plant cells. The immunocytochemistry protocol presented
here can be used routinely to observe protein localization patterns in tissue
sections of various plant species. This protocol is especially suitable for plant
species with more-complex tissue architecture (such as maize, Zea mays), which
makes it difficult to use an easier whole-mount procedure for protein localization.
To facilitate the antibody-antigen reaction, it is necessary to include a wax-embedding
and tissue-sectioning step. The protocol consists of the following procedures:
chemical fixation of tissue, dehydration, wax embedding, sectioning, dewaxing,
rehydration, blocking and antibody incubation. The detailed protocol, recommended
controls and troubleshooting are presented here, along with examples of applications.'
author:
- first_name: Tomasz
full_name: Paciorek, Tomasz
last_name: Paciorek
- first_name: Michael
full_name: Sauer, Michael
last_name: Sauer
- first_name: Jozef
full_name: Balla, Jozef
last_name: Balla
- first_name: Justyna
full_name: Wiśniewska, Justyna
last_name: Wiśniewska
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Paciorek T, Sauer M, Balla J, Wiśniewska J, Friml J. Immunocytochemical technique
for protein localization in sections of plant tissues. Nature Protocols.
2006;1(1):104-107. doi:10.1038/nprot.2006.16
apa: Paciorek, T., Sauer, M., Balla, J., Wiśniewska, J., & Friml, J. (2006).
Immunocytochemical technique for protein localization in sections of plant tissues.
Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/nprot.2006.16
chicago: Paciorek, Tomasz, Michael Sauer, Jozef Balla, Justyna Wiśniewska, and Jiří
Friml. “Immunocytochemical Technique for Protein Localization in Sections of Plant
Tissues.” Nature Protocols. Nature Publishing Group, 2006. https://doi.org/10.1038/nprot.2006.16.
ieee: T. Paciorek, M. Sauer, J. Balla, J. Wiśniewska, and J. Friml, “Immunocytochemical
technique for protein localization in sections of plant tissues,” Nature Protocols,
vol. 1, no. 1. Nature Publishing Group, pp. 104–107, 2006.
ista: Paciorek T, Sauer M, Balla J, Wiśniewska J, Friml J. 2006. Immunocytochemical
technique for protein localization in sections of plant tissues. Nature Protocols.
1(1), 104–107.
mla: Paciorek, Tomasz, et al. “Immunocytochemical Technique for Protein Localization
in Sections of Plant Tissues.” Nature Protocols, vol. 1, no. 1, Nature
Publishing Group, 2006, pp. 104–07, doi:10.1038/nprot.2006.16.
short: T. Paciorek, M. Sauer, J. Balla, J. Wiśniewska, J. Friml, Nature Protocols
1 (2006) 104–107.
date_created: 2018-12-11T12:00:52Z
date_published: 2006-06-01T00:00:00Z
date_updated: 2021-01-12T07:40:27Z
day: '01'
doi: 10.1038/nprot.2006.16
extern: 1
intvolume: ' 1'
issue: '1'
month: '06'
page: 104 - 107
publication: Nature Protocols
publication_status: published
publisher: Nature Publishing Group
publist_id: '3689'
quality_controlled: 0
status: public
title: Immunocytochemical technique for protein localization in sections of plant
tissues
type: journal_article
volume: 1
year: '2006'
...
---
_id: '3014'
abstract:
- lang: eng
text: Plant biology is currently confronted with an overflow of expression profile
data provided by high-throughput microarray transcription analyses. However, the
tissue and cellular resolution of these techniques is limited. Thus, it is still
necessary to examine the expression pattern of selected candidate genes at a cellular
level. Here we present an in situ mRNA hybridization method that is routinely
used in the analysis of gene expression patterns. The protocol is optimized for
mRNA localizations in sectioned tissue of Arabidopsis seedlings including embryos,
roots, hypocotyls, young primary leaves and flowers. The detailed protocol, recommended
controls and troubleshooting are presented along with examples of application.
The total time for the process is 10 days.
author:
- first_name: Philip
full_name: Brewer, Philip B
last_name: Brewer
- first_name: Marcus
full_name: Heisler, Marcus G
last_name: Heisler
- first_name: Jan
full_name: Hejátko, Jan
last_name: Hejátko
- first_name: Jirí
full_name: Jirí Friml
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Eva
full_name: Eva Benková
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: Brewer P, Heisler M, Hejátko J, Friml J, Benková E. In situ hybridization for
mRNA detection in Arabidopsis tissue sections. Nature Protocols. 2006;1(3):1462-1467.
doi:10.1038/nprot.2006.226
apa: Brewer, P., Heisler, M., Hejátko, J., Friml, J., & Benková, E. (2006).
In situ hybridization for mRNA detection in Arabidopsis tissue sections. Nature
Protocols. Nature Publishing Group. https://doi.org/10.1038/nprot.2006.226
chicago: Brewer, Philip, Marcus Heisler, Jan Hejátko, Jiří Friml, and Eva Benková.
“In Situ Hybridization for MRNA Detection in Arabidopsis Tissue Sections.” Nature
Protocols. Nature Publishing Group, 2006. https://doi.org/10.1038/nprot.2006.226.
ieee: P. Brewer, M. Heisler, J. Hejátko, J. Friml, and E. Benková, “In situ hybridization
for mRNA detection in Arabidopsis tissue sections,” Nature Protocols, vol.
1, no. 3. Nature Publishing Group, pp. 1462–1467, 2006.
ista: Brewer P, Heisler M, Hejátko J, Friml J, Benková E. 2006. In situ hybridization
for mRNA detection in Arabidopsis tissue sections. Nature Protocols. 1(3), 1462–1467.
mla: Brewer, Philip, et al. “In Situ Hybridization for MRNA Detection in Arabidopsis
Tissue Sections.” Nature Protocols, vol. 1, no. 3, Nature Publishing Group,
2006, pp. 1462–67, doi:10.1038/nprot.2006.226.
short: P. Brewer, M. Heisler, J. Hejátko, J. Friml, E. Benková, Nature Protocols
1 (2006) 1462–1467.
date_created: 2018-12-11T12:00:52Z
date_published: 2006-08-01T00:00:00Z
date_updated: 2021-01-12T07:40:28Z
day: '01'
doi: 10.1038/nprot.2006.226
extern: 1
intvolume: ' 1'
issue: '3'
month: '08'
page: 1462 - 1467
publication: Nature Protocols
publication_status: published
publisher: Nature Publishing Group
publist_id: '3687'
quality_controlled: 0
status: public
title: In situ hybridization for mRNA detection in Arabidopsis tissue sections
type: journal_article
volume: 1
year: '2006'
...
---
_id: '3152'
abstract:
- lang: eng
text: The basic concepts of the molecular machinery that mediates cell migration
have been gleaned from cell culture systems. However, the three-dimensional environment
within an organism presents migrating cells with a much greater challenge. They
must move between and among other cells while interpreting multiple attractive
and repulsive cues to choose their proper path. They must coordinate their cell
adhesion with their surroundings and know when to start and stop moving. New insights
into the control of these remaining mysteries have emerged from genetic dissection
and live imaging of germ cell migration in Drosophila, zebrafish, and mouse embryos.
In this review, we first describe germ cell migration in cellular and mechanistic
detail in these different model systems. We then compare these systems to highlight
the emerging principles. Finally, we contrast the migration of germ cells with
that of immune and cancer cells to outline the conserved and different mechanisms.
author:
- first_name: Prabhat
full_name: Kunwar, Prabhat S
last_name: Kunwar
- first_name: Daria E
full_name: Daria Siekhaus
id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
last_name: Siekhaus
orcid: 0000-0001-8323-8353
- first_name: Ruth
full_name: Lehmann, Ruth
last_name: Lehmann
citation:
ama: Kunwar P, Siekhaus DE, Lehmann R. In vivo migration A germ cell perspective.
Annual Review of Cell and Developmental Biology. 2006;22:237-265. doi:10.1146/annurev.cellbio.22.010305.103337
apa: Kunwar, P., Siekhaus, D. E., & Lehmann, R. (2006). In vivo migration A
germ cell perspective. Annual Review of Cell and Developmental Biology.
Annual Reviews. https://doi.org/10.1146/annurev.cellbio.22.010305.103337
chicago: Kunwar, Prabhat, Daria E Siekhaus, and Ruth Lehmann. “In Vivo Migration
A Germ Cell Perspective.” Annual Review of Cell and Developmental Biology.
Annual Reviews, 2006. https://doi.org/10.1146/annurev.cellbio.22.010305.103337.
ieee: P. Kunwar, D. E. Siekhaus, and R. Lehmann, “In vivo migration A germ cell
perspective,” Annual Review of Cell and Developmental Biology, vol. 22.
Annual Reviews, pp. 237–265, 2006.
ista: Kunwar P, Siekhaus DE, Lehmann R. 2006. In vivo migration A germ cell perspective.
Annual Review of Cell and Developmental Biology. 22, 237–265.
mla: Kunwar, Prabhat, et al. “In Vivo Migration A Germ Cell Perspective.” Annual
Review of Cell and Developmental Biology, vol. 22, Annual Reviews, 2006, pp.
237–65, doi:10.1146/annurev.cellbio.22.010305.103337.
short: P. Kunwar, D.E. Siekhaus, R. Lehmann, Annual Review of Cell and Developmental
Biology 22 (2006) 237–265.
date_created: 2018-12-11T12:01:42Z
date_published: 2006-06-14T00:00:00Z
date_updated: 2021-01-12T07:41:25Z
day: '14'
doi: 10.1146/annurev.cellbio.22.010305.103337
extern: 1
intvolume: ' 22'
month: '06'
page: 237 - 265
publication: Annual Review of Cell and Developmental Biology
publication_status: published
publisher: Annual Reviews
publist_id: '3543'
quality_controlled: 0
status: public
title: In vivo migration A germ cell perspective
type: journal_article
volume: 22
year: '2006'
...
---
_id: '3189'
abstract:
- lang: eng
text: This paper presents an algorithm capable of real-time separation of foreground
from background in monocular video sequences. Automatic segmentation of layers
from colour/contrast or from motion alone is known to be error-prone. Here motion,
colour and contrast cues are probabilistically fused together with spatial and
temporal priors to infer layers accurately and efficiently. Central to our algorithm
is the fact that pixel velocities are not needed, thus removing the need for optical
flow estimation, with its tendency to error and computational expense. Instead,
an efficient motion vs non-motion classifier is trained to operate directly and
jointly on intensity-change and contrast. Its output is then fused with colour
information. The prior on segmentation is represented by a second order, temporal,
Hidden Markov Model, together with a spatial MRF favouring coherence except where
contrast is high. Finally, accurate layer segmentation and explicit occlusion
detection are efficiently achieved by binary graph cut. The segmentation accuracy
of the proposed algorithm is quantitatively evaluated with respect to existing
ground-truth data and found to be comparable to the accuracy of a state of the
art stereo segmentation algorithm. Fore-ground/background segmentation is demonstrated
in the application of live background substitution and shown to generate convincingly
good quality composite video.
author:
- first_name: Antonio
full_name: Criminisi, Antonio
last_name: Criminisi
- first_name: Geoffrey
full_name: Cross, Geoffrey
last_name: Cross
- first_name: Andrew
full_name: Blake, Andrew
last_name: Blake
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
citation:
ama: 'Criminisi A, Cross G, Blake A, Kolmogorov V. Bilayer segmentation of live
video. In: Vol 1. IEEE; 2006:53-60. doi:10.1109/CVPR.2006.69'
apa: 'Criminisi, A., Cross, G., Blake, A., & Kolmogorov, V. (2006). Bilayer
segmentation of live video (Vol. 1, pp. 53–60). Presented at the CVPR: Computer
Vision and Pattern Recognition, IEEE. https://doi.org/10.1109/CVPR.2006.69'
chicago: Criminisi, Antonio, Geoffrey Cross, Andrew Blake, and Vladimir Kolmogorov.
“Bilayer Segmentation of Live Video,” 1:53–60. IEEE, 2006. https://doi.org/10.1109/CVPR.2006.69.
ieee: 'A. Criminisi, G. Cross, A. Blake, and V. Kolmogorov, “Bilayer segmentation
of live video,” presented at the CVPR: Computer Vision and Pattern Recognition,
2006, vol. 1, pp. 53–60.'
ista: 'Criminisi A, Cross G, Blake A, Kolmogorov V. 2006. Bilayer segmentation of
live video. CVPR: Computer Vision and Pattern Recognition vol. 1, 53–60.'
mla: Criminisi, Antonio, et al. Bilayer Segmentation of Live Video. Vol.
1, IEEE, 2006, pp. 53–60, doi:10.1109/CVPR.2006.69.
short: A. Criminisi, G. Cross, A. Blake, V. Kolmogorov, in:, IEEE, 2006, pp. 53–60.
conference:
name: 'CVPR: Computer Vision and Pattern Recognition'
date_created: 2018-12-11T12:01:54Z
date_published: 2006-07-05T00:00:00Z
date_updated: 2021-01-12T07:41:40Z
day: '05'
doi: 10.1109/CVPR.2006.69
extern: 1
intvolume: ' 1'
main_file_link:
- open_access: '0'
url: http://research.microsoft.com/en-us/um/people/ablake/papers/ablake/criminisi_cvpr06.pdf
month: '07'
page: 53 - 60
publication_status: published
publisher: IEEE
publist_id: '3494'
quality_controlled: 0
status: public
title: Bilayer segmentation of live video
type: conference
volume: 1
year: '2006'
...
---
_id: '3190'
abstract:
- lang: eng
text: Algorithms for discrete energy minimization are of fundamental importance
in computer vision. In this paper, we focus on the recent technique proposed by
Wainwright et al. (Nov. 2005)- tree-reweighted max-product message passing (TRW).
It was inspired by the problem of maximizing a lower bound on the energy. However,
the algorithm is not guaranteed to increase this bound - it may actually go down.
In addition, TRW does not always converge. We develop a modification of this algorithm
which we call sequential tree-reweighted message passing. Its main property is
that the bound is guaranteed not to decrease. We also give a weak tree agreement
condition which characterizes local maxima of the bound with respect to TRW algorithms.
We prove that our algorithm has a limit point that achieves weak tree agreement.
Finally, we show that, our algorithm requires half as much memory as traditional
message passing approaches. Experimental results demonstrate that on certain synthetic
and real problems, our algorithm outperforms both the ordinary belief propagation
and tree-reweighted algorithm in (M. J. Wainwright, et al., Nov. 2005). In addition,
on stereo problems with Potts interactions, we obtain a lower energy than graph
cuts.
author:
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
citation:
ama: Kolmogorov V. Convergent tree reweighted message passing for energy minimization.
IEEE Transactions on Pattern Analysis and Machine Intelligence. 2006;28(10):1568-1583.
doi:10.1109/TPAMI.2006.200
apa: Kolmogorov, V. (2006). Convergent tree reweighted message passing for energy
minimization. IEEE Transactions on Pattern Analysis and Machine Intelligence.
IEEE. https://doi.org/10.1109/TPAMI.2006.200
chicago: Kolmogorov, Vladimir. “Convergent Tree Reweighted Message Passing for Energy
Minimization.” IEEE Transactions on Pattern Analysis and Machine Intelligence.
IEEE, 2006. https://doi.org/10.1109/TPAMI.2006.200.
ieee: V. Kolmogorov, “Convergent tree reweighted message passing for energy minimization,”
IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 28,
no. 10. IEEE, pp. 1568–1583, 2006.
ista: Kolmogorov V. 2006. Convergent tree reweighted message passing for energy
minimization. IEEE Transactions on Pattern Analysis and Machine Intelligence.
28(10), 1568–1583.
mla: Kolmogorov, Vladimir. “Convergent Tree Reweighted Message Passing for Energy
Minimization.” IEEE Transactions on Pattern Analysis and Machine Intelligence,
vol. 28, no. 10, IEEE, 2006, pp. 1568–83, doi:10.1109/TPAMI.2006.200.
short: V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence
28 (2006) 1568–1583.
date_created: 2018-12-11T12:01:55Z
date_published: 2006-08-21T00:00:00Z
date_updated: 2021-01-12T07:41:41Z
day: '21'
doi: 10.1109/TPAMI.2006.200
extern: 1
intvolume: ' 28'
issue: '10'
main_file_link:
- open_access: '0'
url: http://research.microsoft.com/pubs/67371/trw_maxproduct_aistats05.pdf
month: '08'
page: 1568 - 1583
publication: IEEE Transactions on Pattern Analysis and Machine Intelligence
publication_status: published
publisher: IEEE
publist_id: '3495'
quality_controlled: 0
status: public
title: Convergent tree reweighted message passing for energy minimization
type: journal_article
volume: 28
year: '2006'
...
---
_id: '3188'
abstract:
- lang: eng
text: 'We introduce the term cosegmentation which denotes the task of segmenting
simultaneously the common parts of an image pair. A generative model for cosegmentation
is presented. Inference in the model leads to minimizing an energy with an MRF
term encoding spatial coherency and a global constraint which attempts to match
the appearance histograms of the common parts. This energy has not been proposed
previously and its optimization is challenging and NP-hard. For this problem a
novel optimization scheme which we call trust region graph cuts is presented.
We demonstrate that this framework has the potential to improve a wide range of
research: Object driven image retrieval, video tracking and segmentation, and
interactive image editing. The power of the framework lies in its generality,
the common part can be a rigid/non-rigid object (or scene), observed from different
viewpoints or even similar objects of the same class.'
author:
- first_name: Carsten
full_name: Rother, Carsten
last_name: Rother
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Thomas
full_name: Minka, Thomas P
last_name: Minka
- first_name: Andrew
full_name: Blake, Andrew
last_name: Blake
citation:
ama: 'Rother C, Kolmogorov V, Minka T, Blake A. Cosegmentation of image pairs by
histogram matching - Incorporating a global constraint into MRFs. In: IEEE; 2006:993-1000.
doi:10.1109/CVPR.2006.91'
apa: 'Rother, C., Kolmogorov, V., Minka, T., & Blake, A. (2006). Cosegmentation
of image pairs by histogram matching - Incorporating a global constraint into
MRFs (pp. 993–1000). Presented at the CVPR: Computer Vision and Pattern Recognition,
IEEE. https://doi.org/10.1109/CVPR.2006.91'
chicago: Rother, Carsten, Vladimir Kolmogorov, Thomas Minka, and Andrew Blake. “Cosegmentation
of Image Pairs by Histogram Matching - Incorporating a Global Constraint into
MRFs,” 993–1000. IEEE, 2006. https://doi.org/10.1109/CVPR.2006.91.
ieee: 'C. Rother, V. Kolmogorov, T. Minka, and A. Blake, “Cosegmentation of image
pairs by histogram matching - Incorporating a global constraint into MRFs,” presented
at the CVPR: Computer Vision and Pattern Recognition, 2006, pp. 993–1000.'
ista: 'Rother C, Kolmogorov V, Minka T, Blake A. 2006. Cosegmentation of image pairs
by histogram matching - Incorporating a global constraint into MRFs. CVPR: Computer
Vision and Pattern Recognition, 993–1000.'
mla: Rother, Carsten, et al. Cosegmentation of Image Pairs by Histogram Matching
- Incorporating a Global Constraint into MRFs. IEEE, 2006, pp. 993–1000, doi:10.1109/CVPR.2006.91.
short: C. Rother, V. Kolmogorov, T. Minka, A. Blake, in:, IEEE, 2006, pp. 993–1000.
conference:
name: 'CVPR: Computer Vision and Pattern Recognition'
date_created: 2018-12-11T12:01:54Z
date_published: 2006-07-05T00:00:00Z
date_updated: 2021-01-12T07:41:40Z
day: '05'
doi: 10.1109/CVPR.2006.91
extern: 1
month: '07'
page: 993 - 1000
publication_status: published
publisher: IEEE
publist_id: '3493'
quality_controlled: 0
status: public
title: Cosegmentation of image pairs by histogram matching - Incorporating a global
constraint into MRFs
type: conference
year: '2006'
...
---
_id: '3214'
abstract:
- lang: eng
text: |-
The Feistel-network is a popular structure underlying many block-ciphers where the cipher is constructed from many simpler rounds, each defined by some function which is derived from the secret key.
Luby and Rackoff showed that the three-round Feistel-network – each round instantiated with a pseudorandom function secure against adaptive chosen plaintext attacks (CPA) – is a CPA secure pseudorandom permutation, thus giving some confidence in the soundness of using a Feistel-network to design block-ciphers.
But the round functions used in actual block-ciphers are – for efficiency reasons – far from being pseudorandom. We investigate the security of the Feistel-network against CPA distinguishers when the only security guarantee we have for the round functions is that they are secure against non-adaptive chosen plaintext attacks (nCPA). We show that in the information-theoretic setting, four rounds with nCPA secure round functions are sufficient (and necessary) to get a CPA secure permutation. Unfortunately, this result does not translate into the more interesting pseudorandom setting. In fact, under the so-called Inverse Decisional Diffie-Hellman assumption the Feistel-network with four rounds, each instantiated with a nCPA secure pseudorandom function, is in general not a CPA secure pseudorandom permutation.
acknowledgement: Most of this work was done while the K. Pietrzak was a PhD student
at ETH where he was supported by the Swiss National Science Foundation, project
No. 200020- 103847/1. Currently he is partially supported by the Commission of the
European Communities through the IST program under contract IST-2002-507932 ECRYPT.
alternative_title:
- LNCS
author:
- first_name: Ueli
full_name: Maurer, Ueli M
last_name: Maurer
- first_name: Yvonne
full_name: Oswald, Yvonne A
last_name: Oswald
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Johan
full_name: Sjödin, Johan
last_name: Sjödin
citation:
ama: 'Maurer U, Oswald Y, Pietrzak KZ, Sjödin J. Luby Rackoff ciphers from weak
round functions . In: Vol 4004. Springer; 2006:391-408. doi:10.1007/11761679_24'
apa: 'Maurer, U., Oswald, Y., Pietrzak, K. Z., & Sjödin, J. (2006). Luby Rackoff
ciphers from weak round functions (Vol. 4004, pp. 391–408). Presented at the
EUROCRYPT: Theory and Applications of Cryptographic Techniques, Springer. https://doi.org/10.1007/11761679_24'
chicago: Maurer, Ueli, Yvonne Oswald, Krzysztof Z Pietrzak, and Johan Sjödin. “Luby
Rackoff Ciphers from Weak Round Functions ,” 4004:391–408. Springer, 2006. https://doi.org/10.1007/11761679_24.
ieee: 'U. Maurer, Y. Oswald, K. Z. Pietrzak, and J. Sjödin, “Luby Rackoff ciphers
from weak round functions ,” presented at the EUROCRYPT: Theory and Applications
of Cryptographic Techniques, 2006, vol. 4004, pp. 391–408.'
ista: 'Maurer U, Oswald Y, Pietrzak KZ, Sjödin J. 2006. Luby Rackoff ciphers from
weak round functions . EUROCRYPT: Theory and Applications of Cryptographic Techniques,
LNCS, vol. 4004, 391–408.'
mla: Maurer, Ueli, et al. Luby Rackoff Ciphers from Weak Round Functions .
Vol. 4004, Springer, 2006, pp. 391–408, doi:10.1007/11761679_24.
short: U. Maurer, Y. Oswald, K.Z. Pietrzak, J. Sjödin, in:, Springer, 2006, pp.
391–408.
conference:
name: 'EUROCRYPT: Theory and Applications of Cryptographic Techniques'
date_created: 2018-12-11T12:02:03Z
date_published: 2006-07-11T00:00:00Z
date_updated: 2021-01-12T07:41:51Z
day: '11'
doi: 10.1007/11761679_24
extern: 1
intvolume: ' 4004'
month: '07'
page: 391 - 408
publication_status: published
publisher: Springer
publist_id: '3465'
quality_controlled: 0
status: public
title: 'Luby Rackoff ciphers from weak round functions '
type: conference
volume: 4004
year: '2006'
...
---
_id: '3215'
abstract:
- lang: eng
text: 'Most cryptographic primitives such as encryption, authentication or secret
sharing require randomness. Usually one assumes that perfect randomness is available,
but those primitives might also be realized under weaker assumptions. In this
work we continue the study of building secure cryptographic primitives from imperfect
random sources initiated by Dodis and Spencer (FOCS’02). Their main result shows
that there exists a (high-entropy) source of randomness allowing for perfect encryption
of a bit, and yet from which one cannot extract even a single weakly random bit,
separating encryption from extraction. Our main result separates encryption from
2-out-2 secret sharing (both in the information-theoretic and in the computational
settings): any source which can be used to achieve one-bit encryption also can
be used for 2-out-2 secret sharing of one bit, but the converse is false, even
for high-entropy sources. Therefore, possibility of extraction strictly implies
encryption, which in turn strictly implies 2-out-2 secret sharing.'
acknowledgement: Supported in part by NSF career award CCR-0133806 and NSF grant CCR-0311095.
Supported by the Swiss National Science Foundation, project No. 200020-103847/1.
alternative_title:
- LNCS
author:
- first_name: Yevgeniy
full_name: Dodis, Yevgeniy
last_name: Dodis
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Bartosz
full_name: Przydatek, Bartosz
last_name: Przydatek
citation:
ama: 'Dodis Y, Pietrzak KZ, Przydatek B. Separating sources for encryption and secret
sharing. In: Vol 3876. Springer; 2006:601-616. doi:10.1007/11681878_31'
apa: 'Dodis, Y., Pietrzak, K. Z., & Przydatek, B. (2006). Separating sources
for encryption and secret sharing (Vol. 3876, pp. 601–616). Presented at the TCC:
Theory of Cryptography Conference, Springer. https://doi.org/10.1007/11681878_31'
chicago: Dodis, Yevgeniy, Krzysztof Z Pietrzak, and Bartosz Przydatek. “Separating
Sources for Encryption and Secret Sharing,” 3876:601–16. Springer, 2006. https://doi.org/10.1007/11681878_31.
ieee: 'Y. Dodis, K. Z. Pietrzak, and B. Przydatek, “Separating sources for encryption
and secret sharing,” presented at the TCC: Theory of Cryptography Conference,
2006, vol. 3876, pp. 601–616.'
ista: 'Dodis Y, Pietrzak KZ, Przydatek B. 2006. Separating sources for encryption
and secret sharing. TCC: Theory of Cryptography Conference, LNCS, vol. 3876, 601–616.'
mla: Dodis, Yevgeniy, et al. Separating Sources for Encryption and Secret Sharing.
Vol. 3876, Springer, 2006, pp. 601–16, doi:10.1007/11681878_31.
short: Y. Dodis, K.Z. Pietrzak, B. Przydatek, in:, Springer, 2006, pp. 601–616.
conference:
name: 'TCC: Theory of Cryptography Conference'
date_created: 2018-12-11T12:02:04Z
date_published: 2006-04-11T00:00:00Z
date_updated: 2021-01-12T07:41:51Z
day: '11'
doi: 10.1007/11681878_31
extern: 1
intvolume: ' 3876'
month: '04'
page: 601 - 616
publication_status: published
publisher: Springer
publist_id: '3466'
quality_controlled: 0
status: public
title: Separating sources for encryption and secret sharing
type: conference
volume: 3876
year: '2006'
...
---
_id: '3217'
abstract:
- lang: eng
text: |-
To prove that a secure key-agreement protocol exists one must at least show P ≠NP. Moreover any proof that the sequential composition of two non-adaptively secure pseudorandom functions is secure against at least two adaptive queries must falsify the decisional Diffie-Hellman assumption, a standard assumption from public-key cryptography. Hence proving any of this two seemingly unrelated statements would require a significant breakthrough. We show that at least one of the two statements is true.
To our knowledge this gives the first positive cryptographic result (namely that composition implies some weak adaptive security) which holds in Minicrypt, but not in Cryptomania, i.e. under the assumption that one-way functions exist, but public-key cryptography does not.
acknowledgement: Author was supported during the writing of this work by the Swiss
National Science Foundation, project No. 200020-103847/1. Part of this work is supported
by the Commission of the European Communities through the IST program under contract
IST-2002-507932
alternative_title:
- LNCS
author:
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Pietrzak KZ. Composition implies adaptive security in minicrypt. In: Vol 4004.
Springer; 2006:328-338. doi:10.1007/11761679_20'
apa: 'Pietrzak, K. Z. (2006). Composition implies adaptive security in minicrypt
(Vol. 4004, pp. 328–338). Presented at the EUROCRYPT: Theory and Applications
of Cryptographic Techniques, Springer. https://doi.org/10.1007/11761679_20'
chicago: Pietrzak, Krzysztof Z. “Composition Implies Adaptive Security in Minicrypt,”
4004:328–38. Springer, 2006. https://doi.org/10.1007/11761679_20.
ieee: 'K. Z. Pietrzak, “Composition implies adaptive security in minicrypt,” presented
at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, 2006, vol.
4004, pp. 328–338.'
ista: 'Pietrzak KZ. 2006. Composition implies adaptive security in minicrypt. EUROCRYPT:
Theory and Applications of Cryptographic Techniques, LNCS, vol. 4004, 328–338.'
mla: Pietrzak, Krzysztof Z. Composition Implies Adaptive Security in Minicrypt.
Vol. 4004, Springer, 2006, pp. 328–38, doi:10.1007/11761679_20.
short: K.Z. Pietrzak, in:, Springer, 2006, pp. 328–338.
conference:
name: 'EUROCRYPT: Theory and Applications of Cryptographic Techniques'
date_created: 2018-12-11T12:02:04Z
date_published: 2006-07-11T00:00:00Z
date_updated: 2021-01-12T07:41:52Z
day: '11'
doi: 10.1007/11761679_20
extern: 1
intvolume: ' 4004'
month: '07'
page: 328 - 338
publication_status: published
publisher: Springer
publist_id: '3464'
quality_controlled: 0
status: public
title: Composition implies adaptive security in minicrypt
type: conference
volume: 4004
year: '2006'
...
---
_id: '3216'
abstract:
- lang: eng
text: |-
We prove a new upper bound on the advantage of any adversary for distinguishing the encrypted CBC-MAC (EMAC) based on random permutations from a random function. Our proof uses techniques recently introduced in [BPR05], which again were inspired by [DGH + 04].
The bound we prove is tight — in the sense that it matches the advantage of known attacks up to a constant factor — for a wide range of the parameters: let n denote the block-size, q the number of queries the adversary is allowed to make and ℓ an upper bound on the length (i.e. number of blocks) of the messages, then for ℓ ≤ 2 n/8 and q≥ł2 the advantage is in the order of q 2/2 n (and in particular independent of ℓ). This improves on the previous bound of q 2ℓΘ(1/ln ln ℓ)/2 n from [BPR05] and matches the trivial attack (which thus is basically optimal) where one simply asks random queries until a collision is found.
acknowledgement: Part of this work is supported by the Commission of the European
Communities through the IST program under contract IST-2002-507932 ECRYPT.
alternative_title:
- LNCS
author:
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Pietrzak KZ. A tight bound for EMAC. In: Vol 4052. Springer; 2006:168-179.
doi:10.1007/11787006_15'
apa: 'Pietrzak, K. Z. (2006). A tight bound for EMAC (Vol. 4052, pp. 168–179). Presented
at the ICALP: Automata, Languages and Programming, Springer. https://doi.org/10.1007/11787006_15'
chicago: Pietrzak, Krzysztof Z. “A Tight Bound for EMAC,” 4052:168–79. Springer,
2006. https://doi.org/10.1007/11787006_15.
ieee: 'K. Z. Pietrzak, “A tight bound for EMAC,” presented at the ICALP: Automata,
Languages and Programming, 2006, vol. 4052, pp. 168–179.'
ista: 'Pietrzak KZ. 2006. A tight bound for EMAC. ICALP: Automata, Languages and
Programming, LNCS, vol. 4052, 168–179.'
mla: Pietrzak, Krzysztof Z. A Tight Bound for EMAC. Vol. 4052, Springer,
2006, pp. 168–79, doi:10.1007/11787006_15.
short: K.Z. Pietrzak, in:, Springer, 2006, pp. 168–179.
conference:
name: 'ICALP: Automata, Languages and Programming'
date_created: 2018-12-11T12:02:04Z
date_published: 2006-07-28T00:00:00Z
date_updated: 2021-01-12T07:41:52Z
day: '28'
doi: 10.1007/11787006_15
extern: 1
intvolume: ' 4052'
month: '07'
page: 168 - 179
publication_status: published
publisher: Springer
publist_id: '3463'
quality_controlled: 0
status: public
title: A tight bound for EMAC
type: conference
volume: 4052
year: '2006'
...
---
_id: '3522'
abstract:
- lang: eng
text: We observed sharp wave/ripples (SWR) during exploration within brief (<
2.4 s) interruptions of or during theta oscillations. CA1 network responses of
SWRs occurring during exploration (eSWR) and SWRs detected in waking immobility
or sleep were similar. However, neuronal activity during eSWR was location dependent,
and eSWR-related firing was stronger inside the place field than outside. The
eSPW-related firing increase was stronger than the baseline increase inside compared
to outside, suggesting a “supralinear” summation of eSWR and place-selective inputs.
Pairs of cells with similar place fields and/or correlated firing during exploration
showed stronger coactivation during eSWRs and subsequent sleep-SWRs. Sequential
activation of place cells was not required for the reactivation of waking co-firing
patterns; cell pairs with symmetrical cross-correlations still showed reactivated
waking co-firing patterns during sleep-SWRs. We suggest that place-selective firing
during eSWRs facilitates initial associations between cells with similar place
fields that enable place-related ensemble patterns to recur during subsequent
sleep-SWRs.
author:
- first_name: Joseph
full_name: Joseph O'Neill
id: 426376DC-F248-11E8-B48F-1D18A9856A87
last_name: O'Neill
- first_name: Timothy
full_name: Senior,Timothy
last_name: Senior
- first_name: Jozsef L
full_name: Jozsef Csicsvari
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
citation:
ama: O’Neill J, Senior T, Csicsvari JL. Place-selective firing of CA1 pyramidal
cells during sharp wave/ripple network patterns in exploratory behavior. Neuron.
2006;49(1):143-155. doi:10.1016/j.neuron.2005.10.037
apa: O’Neill, J., Senior, T., & Csicsvari, J. L. (2006). Place-selective firing
of CA1 pyramidal cells during sharp wave/ripple network patterns in exploratory
behavior. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2005.10.037
chicago: O’Neill, Joseph, Timothy Senior, and Jozsef L Csicsvari. “Place-Selective
Firing of CA1 Pyramidal Cells during Sharp Wave/Ripple Network Patterns in Exploratory
Behavior.” Neuron. Elsevier, 2006. https://doi.org/10.1016/j.neuron.2005.10.037.
ieee: J. O’Neill, T. Senior, and J. L. Csicsvari, “Place-selective firing of CA1
pyramidal cells during sharp wave/ripple network patterns in exploratory behavior,”
Neuron, vol. 49, no. 1. Elsevier, pp. 143–155, 2006.
ista: O’Neill J, Senior T, Csicsvari JL. 2006. Place-selective firing of CA1 pyramidal
cells during sharp wave/ripple network patterns in exploratory behavior. Neuron.
49(1), 143–155.
mla: O’Neill, Joseph, et al. “Place-Selective Firing of CA1 Pyramidal Cells during
Sharp Wave/Ripple Network Patterns in Exploratory Behavior.” Neuron, vol.
49, no. 1, Elsevier, 2006, pp. 143–55, doi:10.1016/j.neuron.2005.10.037.
short: J. O’Neill, T. Senior, J.L. Csicsvari, Neuron 49 (2006) 143–155.
date_created: 2018-12-11T12:03:46Z
date_published: 2006-01-05T00:00:00Z
date_updated: 2021-01-12T07:44:03Z
day: '05'
doi: 10.1016/j.neuron.2005.10.037
extern: 1
intvolume: ' 49'
issue: '1'
month: '01'
page: 143 - 155
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '2863'
quality_controlled: 0
status: public
title: Place-selective firing of CA1 pyramidal cells during sharp wave/ripple network
patterns in exploratory behavior
type: journal_article
volume: 49
year: '2006'
...
---
_id: '3607'
abstract:
- lang: eng
text: We apply new analytical methods to understand the consequences of population
bottlenecks for expected additive genetic variance. We analyze essentially all
models for multilocus epistasis that have been numerically simulated to demonstrate
increased additive variance. We conclude that for biologically plausible models,
large increases in expected additive variance–attributable to epistasis rather
than dominance–are unlikely. Naciri-Graven and Goudet (2003) found that as the
number of epistatically interacting loci increases, additive variance tends to
be inflated more after a bottleneck. We argue that this result reflects biologically
unrealistic aspects of their models. Specifically, as the number of loci increases,
higher-order epistatic interactions become increasingly important in these models,
with an increasing fraction of the genetic variance becoming nonadditive, contrary
to empirical observations. As shown by Barton and Turelli (2004), without dominance,
conversion of nonadditive to additive variance depends only on the variance components
and not on the number of loci per se. Numerical results indicating that more inbreeding
is needed to produce maximal release of additive variance with more loci follow
directly from our analytical results, which show that high levels of inbreeding
(F > 0.5) are needed for significant conversion of higher-order components.
We discuss alternative approaches to modeling multilocus epistasis and understanding
its consequences.
author:
- first_name: Michael
full_name: Turelli, Michael
last_name: Turelli
- first_name: Nicholas H
full_name: Nicholas Barton
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: Turelli M, Barton NH. Will population bottlenecks and multilocus epistasis
increase additive genetic variance? Evolution; International Journal of Organic
Evolution. 2006;60(9):1763-1776. doi:10.1111/j.0014-3820.2006.tb00521.x
apa: Turelli, M., & Barton, N. H. (2006). Will population bottlenecks and multilocus
epistasis increase additive genetic variance? Evolution; International Journal
of Organic Evolution. Wiley-Blackwell. https://doi.org/10.1111/j.0014-3820.2006.tb00521.x
chicago: Turelli, Michael, and Nicholas H Barton. “Will Population Bottlenecks and
Multilocus Epistasis Increase Additive Genetic Variance?” Evolution; International
Journal of Organic Evolution. Wiley-Blackwell, 2006. https://doi.org/10.1111/j.0014-3820.2006.tb00521.x.
ieee: M. Turelli and N. H. Barton, “Will population bottlenecks and multilocus epistasis
increase additive genetic variance?,” Evolution; International Journal of Organic
Evolution, vol. 60, no. 9. Wiley-Blackwell, pp. 1763–1776, 2006.
ista: Turelli M, Barton NH. 2006. Will population bottlenecks and multilocus epistasis
increase additive genetic variance? Evolution; International Journal of Organic
Evolution. 60(9), 1763–1776.
mla: Turelli, Michael, and Nicholas H. Barton. “Will Population Bottlenecks and
Multilocus Epistasis Increase Additive Genetic Variance?” Evolution; International
Journal of Organic Evolution, vol. 60, no. 9, Wiley-Blackwell, 2006, pp. 1763–76,
doi:10.1111/j.0014-3820.2006.tb00521.x.
short: M. Turelli, N.H. Barton, Evolution; International Journal of Organic Evolution
60 (2006) 1763–1776.
date_created: 2018-12-11T12:04:13Z
date_published: 2006-09-01T00:00:00Z
date_updated: 2021-01-12T07:44:37Z
day: '01'
doi: 10.1111/j.0014-3820.2006.tb00521.x
extern: 1
intvolume: ' 60'
issue: '9'
month: '09'
page: 1763 - 1776
publication: Evolution; International Journal of Organic Evolution
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2776'
quality_controlled: 0
status: public
title: Will population bottlenecks and multilocus epistasis increase additive genetic
variance?
type: journal_article
volume: 60
year: '2006'
...
---
_id: '3683'
abstract:
- lang: eng
text: Many algorithms to remove distortion from document images have be proposed
in recent years, but so far there is no reliable method for comparing their performance.
In this paper we propose a collection of methods to measure the quality of such
restoration algorithms for document image which show a non-linear distortion due
to perspective or page curl. For the result from these measurement to be meaningful,
a common data set of ground truth is required. We therefore started with the buildup
of a document image database that is meant to serve as a common data basis for
all kinds of restoration from images of 3D-shaped document. The long term goal
would be to establish this database and following extensions in the area of document
image dewarping as an as fruitful and indispensable tool as e.g. the NIST database
is for OCR, or the Caltech database is for object and face recognition.
author:
- first_name: Christoph
full_name: Christoph Lampert
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
- first_name: Thomas
full_name: Breuel,Thomas M
last_name: Breuel
citation:
ama: 'Lampert C, Breuel T. Objective quality measurement for geometric document
image restoration. In: Springer; 2006.'
apa: 'Lampert, C., & Breuel, T. (2006). Objective quality measurement for geometric
document image restoration. Presented at the DAS: Document Analysis Systems, Springer.'
chicago: Lampert, Christoph, and Thomas Breuel. “Objective Quality Measurement for
Geometric Document Image Restoration.” Springer, 2006.
ieee: 'C. Lampert and T. Breuel, “Objective quality measurement for geometric document
image restoration,” presented at the DAS: Document Analysis Systems, 2006.'
ista: 'Lampert C, Breuel T. 2006. Objective quality measurement for geometric document
image restoration. DAS: Document Analysis Systems.'
mla: Lampert, Christoph, and Thomas Breuel. Objective Quality Measurement for
Geometric Document Image Restoration. Springer, 2006.
short: C. Lampert, T. Breuel, in:, Springer, 2006.
conference:
name: 'DAS: Document Analysis Systems'
date_created: 2018-12-11T12:04:36Z
date_published: 2006-03-16T00:00:00Z
date_updated: 2021-01-12T07:45:07Z
day: '16'
extern: 1
main_file_link:
- open_access: '0'
url: http://pub.ist.ac.at/~chl/papers/lampert-das2006.pdf
month: '03'
publication_status: published
publisher: Springer
publist_id: '2692'
quality_controlled: 0
status: public
title: Objective quality measurement for geometric document image restoration
type: conference
year: '2006'
...
---
_id: '3685'
abstract:
- lang: eng
text: 'Video compression currently is dominated by engineering and fine-tuned heuristic
methods. In this paper, we propose to instead apply the well-developed machinery
of machine learning in order to support the optimization of existing video encoders
and the creation of new ones. Exemplarily, we show how by machine learning we
can improve one encoding step that is crucial for the performance of all current
video standards: macroblock mode decision. By formulating the problem in a Bayesian
setup, we show that macroblock mode decision can be reduced to a classification
problem with a cost function for misclassification that is sample dependent. We
demonstrate how to apply different machine learning techniques to obtain suitable
classifiers and we show in detailed experiments that all of these perform better
than the state-of-the-art heuristic method'
author:
- first_name: Christoph
full_name: Christoph Lampert
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Lampert C. Machine learning for video compression: Macroblock mode decision.
In: IEEE; 2006:936-940. doi:10.1109/ICPR.2006.778'
apa: 'Lampert, C. (2006). Machine learning for video compression: Macroblock mode
decision (pp. 936–940). Presented at the ICPR: International Conference on Pattern
Recognition, IEEE. https://doi.org/10.1109/ICPR.2006.778'
chicago: 'Lampert, Christoph. “Machine Learning for Video Compression: Macroblock
Mode Decision,” 936–40. IEEE, 2006. https://doi.org/10.1109/ICPR.2006.778.'
ieee: 'C. Lampert, “Machine learning for video compression: Macroblock mode decision,”
presented at the ICPR: International Conference on Pattern Recognition, 2006,
pp. 936–940.'
ista: 'Lampert C. 2006. Machine learning for video compression: Macroblock mode
decision. ICPR: International Conference on Pattern Recognition, 936–940.'
mla: 'Lampert, Christoph. Machine Learning for Video Compression: Macroblock
Mode Decision. IEEE, 2006, pp. 936–40, doi:10.1109/ICPR.2006.778.'
short: C. Lampert, in:, IEEE, 2006, pp. 936–940.
conference:
name: 'ICPR: International Conference on Pattern Recognition'
date_created: 2018-12-11T12:04:37Z
date_published: 2006-09-18T00:00:00Z
date_updated: 2021-01-12T07:45:08Z
day: '18'
doi: 10.1109/ICPR.2006.778
extern: 1
month: '09'
page: 936 - 940
publication_status: published
publisher: IEEE
publist_id: '2689'
quality_controlled: 0
status: public
title: 'Machine learning for video compression: Macroblock mode decision'
type: conference
year: '2006'
...
---
_id: '3750'
abstract:
- lang: eng
text: We applied a single-cell assay to characterize how transcription dynamics
affects protein expression levels of a tetracycline-inducible gene expression
system. Transcriptional activity of the tetracycline promoter in response to a
steady level of inducer is steady in ΔacrAB efflux mutant but pulsating in wildtype
Escherichia coli cells. We found that the expression level of the green fluorescent
protein is several folds higher in ΔacrAB efflux mutant than in wildtype cells.
author:
- first_name: Thuc
full_name: Le,Thuc T.
last_name: Le
- first_name: Calin C
full_name: Calin Guet
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
- first_name: Philippe
full_name: Cluzel,Philippe
last_name: Cluzel
citation:
ama: Le T, Guet CC, Cluzel P. Protein expression enhancement in efflux-deleted mutant
bacteria. Protein Expression and Purification. 2006;48(1):28-31.
apa: Le, T., Guet, C. C., & Cluzel, P. (2006). Protein expression enhancement
in efflux-deleted mutant bacteria. Protein Expression and Purification.
Elsevier.
chicago: Le, Thuc, Calin C Guet, and Philippe Cluzel. “Protein Expression Enhancement
in Efflux-Deleted Mutant Bacteria.” Protein Expression and Purification.
Elsevier, 2006.
ieee: T. Le, C. C. Guet, and P. Cluzel, “Protein expression enhancement in efflux-deleted
mutant bacteria,” Protein Expression and Purification, vol. 48, no. 1.
Elsevier, pp. 28–31, 2006.
ista: Le T, Guet CC, Cluzel P. 2006. Protein expression enhancement in efflux-deleted
mutant bacteria. Protein Expression and Purification. 48(1), 28–31.
mla: Le, Thuc, et al. “Protein Expression Enhancement in Efflux-Deleted Mutant Bacteria.”
Protein Expression and Purification, vol. 48, no. 1, Elsevier, 2006, pp.
28–31.
short: T. Le, C.C. Guet, P. Cluzel, Protein Expression and Purification 48 (2006)
28–31.
date_created: 2018-12-11T12:04:58Z
date_published: 2006-07-01T00:00:00Z
date_updated: 2021-01-12T07:51:56Z
day: '01'
extern: 1
intvolume: ' 48'
issue: '1'
month: '07'
page: 28 - 31
publication: Protein Expression and Purification
publication_status: published
publisher: Elsevier
publist_id: '2478'
quality_controlled: 0
status: public
title: Protein expression enhancement in efflux-deleted mutant bacteria
type: journal_article
volume: 48
year: '2006'
...
---
_id: '3767'
abstract:
- lang: eng
text: Models of RNA secondary structure folding are widely used to study evolution
in theory and simulation. However, systematic studies of the parameters involved
are rare. In this paper, we study by simulation how RNA evolution is influenced
by three different factors, namely the mutation rate, scaling of the fitness function,
and distance measure. We found that for low mutation rates the qualitative evolutionary
behavior is robust with respect to the scaling of the fitness function. For efficient
mutation rates, which are close to the error threshold, scaling and distance measure
have a strong influence on the evolutionary behavior. A global distance measure
that takes sequence information additively into account lowers the error threshold.
When using a local sequence-structure alignment for the distance, we observed
a smoother evolution of the fitness over time. Finally, in addition to the well
known error threshold, we identify another threshold of the mutation rate, called
divergence threshold, where the qualitative transient behavior changes from a
localized to an exploratory search.
author:
- first_name: Anne
full_name: Anne Kupczok
id: 2BB22BC2-F248-11E8-B48F-1D18A9856A87
last_name: Kupczok
- first_name: Peter
full_name: Dittrich,Peter
last_name: Dittrich
citation:
ama: Kupczok A, Dittrich P. Determinants of simulated RNA evolution. Journal
of Theoretical Biology. 2006;238(3):726-735. doi:10.1016/j.jtbi.2005.06.019
apa: Kupczok, A., & Dittrich, P. (2006). Determinants of simulated RNA evolution.
Journal of Theoretical Biology. Elsevier. https://doi.org/10.1016/j.jtbi.2005.06.019
chicago: Kupczok, Anne, and Peter Dittrich. “Determinants of Simulated RNA Evolution.”
Journal of Theoretical Biology. Elsevier, 2006. https://doi.org/10.1016/j.jtbi.2005.06.019.
ieee: A. Kupczok and P. Dittrich, “Determinants of simulated RNA evolution.,” Journal
of Theoretical Biology, vol. 238, no. 3. Elsevier, pp. 726–35, 2006.
ista: Kupczok A, Dittrich P. 2006. Determinants of simulated RNA evolution. Journal
of Theoretical Biology. 238(3), 726–35.
mla: Kupczok, Anne, and Peter Dittrich. “Determinants of Simulated RNA Evolution.”
Journal of Theoretical Biology, vol. 238, no. 3, Elsevier, 2006, pp. 726–35,
doi:10.1016/j.jtbi.2005.06.019.
short: A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
date_created: 2018-12-11T12:05:03Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:52:03Z
day: '01'
doi: 10.1016/j.jtbi.2005.06.019
extern: 1
intvolume: ' 238'
issue: '3'
month: '01'
page: 726 - 35
publication: Journal of Theoretical Biology
publication_status: published
publisher: Elsevier
publist_id: '2461'
quality_controlled: 0
status: public
title: Determinants of simulated RNA evolution.
type: journal_article
volume: 238
year: '2006'
...
---
_id: '3813'
abstract:
- lang: eng
text: Hyperpolarization-activated channels (Ih or HCN channels) are widely expressed
in principal neurons in the central nervous system. However, Ih in inhibitory
GABAergic interneurons is less well characterized. We examined the functional
properties of Ih in fast-spiking basket cells (BCs) of the dentate gyrus, using
hippocampal slices from 17- to 21-day-old rats. Bath application of the Ih channel
blocker ZD 7288 at a concentration of 30 microm induced a hyperpolarization of
5.7 +/- 1.5 mV, an increase in input resistance and a correlated increase in apparent
membrane time constant. ZD 7288 blocked a hyperpolarization-activated current
in a concentration-dependent manner (IC50, 1.4 microm). The effects of ZD 7288
were mimicked by external Cs+. The reversal potential of Ih was -27.4 mV, corresponding
to a Na+ to K+ permeability ratio (PNa/PK) of 0.36. The midpoint potential of
the activation curve of Ih was -83.9 mV, and the activation time constant at -120
mV was 190 ms. Single-cell expression analysis using reverse transcription followed
by quantitative polymerase chain reaction revealed that BCs coexpress HCN1 and
HCN2 subunit mRNA, suggesting the formation of heteromeric HCN1/2 channels. ZD
7288 increased the current threshold for evoking antidromic action potentials
by extracellular stimulation, consistent with the expression of Ih in BC axons.
Finally, ZD 7288 decreased the frequency of miniature inhibitory postsynaptic
currents (mIPSCs) in hippocampal granule cells, the main target cells of BCs,
to 70 +/- 4% of the control value. In contrast, the amplitude of mIPSCs was unchanged,
consistent with the presence of Ih in inhibitory terminals. In conclusion, our
results suggest that Ih channels are expressed in the somatodendritic region,
axon and presynaptic elements of fast-spiking BCs in the hippocampus.
author:
- first_name: Yexica
full_name: Aponte, Yexica
last_name: Aponte
- first_name: Cheng
full_name: Lien, Cheng-Chang
last_name: Lien
- first_name: Ellen
full_name: Reisinger, Ellen
last_name: Reisinger
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Aponte Y, Lien C, Reisinger E, Jonas PM. Hyperpolarization-activated cation
channels in fast-spiking interneurons of rat hippocampus. Journal of Physiology.
2006;574(Pt 1):229-243. doi:10.1113/jphysiol.2005.104042
apa: Aponte, Y., Lien, C., Reisinger, E., & Jonas, P. M. (2006). Hyperpolarization-activated
cation channels in fast-spiking interneurons of rat hippocampus. Journal of
Physiology. Wiley-Blackwell. https://doi.org/10.1113/jphysiol.2005.104042
chicago: Aponte, Yexica, Cheng Lien, Ellen Reisinger, and Peter M Jonas. “Hyperpolarization-Activated
Cation Channels in Fast-Spiking Interneurons of Rat Hippocampus.” Journal of
Physiology. Wiley-Blackwell, 2006. https://doi.org/10.1113/jphysiol.2005.104042.
ieee: Y. Aponte, C. Lien, E. Reisinger, and P. M. Jonas, “Hyperpolarization-activated
cation channels in fast-spiking interneurons of rat hippocampus,” Journal of
Physiology, vol. 574, no. Pt 1. Wiley-Blackwell, pp. 229–43, 2006.
ista: Aponte Y, Lien C, Reisinger E, Jonas PM. 2006. Hyperpolarization-activated
cation channels in fast-spiking interneurons of rat hippocampus. Journal of Physiology.
574(Pt 1), 229–43.
mla: Aponte, Yexica, et al. “Hyperpolarization-Activated Cation Channels in Fast-Spiking
Interneurons of Rat Hippocampus.” Journal of Physiology, vol. 574, no.
Pt 1, Wiley-Blackwell, 2006, pp. 229–43, doi:10.1113/jphysiol.2005.104042.
short: Y. Aponte, C. Lien, E. Reisinger, P.M. Jonas, Journal of Physiology 574 (2006)
229–43.
date_created: 2018-12-11T12:05:19Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:52:23Z
day: '01'
doi: 10.1113/jphysiol.2005.104042
extern: 1
intvolume: ' 574'
issue: Pt 1
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1817792/
month: '01'
oa: 1
page: 229 - 43
publication: Journal of Physiology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2397'
quality_controlled: 0
status: public
title: Hyperpolarization-activated cation channels in fast-spiking interneurons of
rat hippocampus
type: journal_article
volume: 574
year: '2006'
...
---
_id: '3814'
abstract:
- lang: eng
text: The axon terminals (mossy fibers) of hippocampal dentate granule cells form
characteristic synaptic connections with large spines or excrescences of both
hilar mossy cells and CA3 pyramidal neurons. Interneurons of the hilar region
and area CA3 are also prominent targets of mossy fibers. The tracing of biocytin-filled
mossy fibers and immunolabeling of target cells with interneuron markers has revealed
that the majority of mossy fiber synapses project to gamma aminobutyric acid (GABA)-ergic
inhibitory interneurons rather than to excitatory principal cells, although the
functional implications of these quantitative differences are unclear. Following
a brief description of the "classical" mossy fiber synapse on excrescences
of CA3 pyramidal cells, the present review focuses on the contacts formed between
granule cells and GABAergic interneurons, both normally and after synaptic reorganization.
In response to deafferentation of mossy cell target cells, which include both
granule cells and interneurons, mossy fibers "sprout" new axon collaterals
that form a band of supragranular mossy fibers in the inner molecular layer of
the dentate gyrus. Although most newly formed recurrent mossy fibers establish
synapses with granule cells, there is an apparently convergent input of new mossy
fibers onto GABA-immunoreactive interneuron dendrites that traverse the inner
molecular layer. These mossy fiber-interneuron synapses in the dentate gyrus are
observed in chronically epileptic rats and may be the structural correlate of
the granule cell hyperinhibition observed in these animals in vivo. Together,
the findings reviewed here establish mossy fiber synapses as an important component
of inhibitory circuits in the hippocampus.
author:
- first_name: Michael
full_name: Frotscher, Michael
last_name: Frotscher
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
- first_name: Robert
full_name: Sloviter, Robert S
last_name: Sloviter
citation:
ama: Frotscher M, Jonas PM, Sloviter R. Synapses formed by normal and abnormal hippocampal
mossy fibers (Review). Cell and Tissue Research. 2006;326(2):361-367. doi:10.1007/s00441-006-0269-2
apa: Frotscher, M., Jonas, P. M., & Sloviter, R. (2006). Synapses formed by
normal and abnormal hippocampal mossy fibers (Review). Cell and Tissue Research.
Springer. https://doi.org/10.1007/s00441-006-0269-2
chicago: Frotscher, Michael, Peter M Jonas, and Robert Sloviter. “Synapses Formed
by Normal and Abnormal Hippocampal Mossy Fibers (Review).” Cell and Tissue
Research. Springer, 2006. https://doi.org/10.1007/s00441-006-0269-2.
ieee: M. Frotscher, P. M. Jonas, and R. Sloviter, “Synapses formed by normal and
abnormal hippocampal mossy fibers (Review),” Cell and Tissue Research,
vol. 326, no. 2. Springer, pp. 361–7, 2006.
ista: Frotscher M, Jonas PM, Sloviter R. 2006. Synapses formed by normal and abnormal
hippocampal mossy fibers (Review). Cell and Tissue Research. 326(2), 361–7.
mla: Frotscher, Michael, et al. “Synapses Formed by Normal and Abnormal Hippocampal
Mossy Fibers (Review).” Cell and Tissue Research, vol. 326, no. 2, Springer,
2006, pp. 361–67, doi:10.1007/s00441-006-0269-2.
short: M. Frotscher, P.M. Jonas, R. Sloviter, Cell and Tissue Research 326 (2006)
361–7.
date_created: 2018-12-11T12:05:19Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2019-04-26T07:22:35Z
day: '01'
doi: 10.1007/s00441-006-0269-2
extern: 1
intvolume: ' 326'
issue: '2'
month: '01'
page: 361 - 7
publication: Cell and Tissue Research
publication_status: published
publisher: Springer
publist_id: '2395'
quality_controlled: 0
status: public
title: Synapses formed by normal and abnormal hippocampal mossy fibers (Review)
type: review
volume: 326
year: '2006'
...
---
_id: '3815'
abstract:
- lang: eng
text: It is widely accepted that the hippocampus plays a major role in learning
and memory. The mossy fiber synapse between granule cells in the dentate gyrus
and pyramidal neurons in the CA3 region is a key component of the hippocampal
trisynaptic circuit. Recent work, partially based on direct presynaptic patch-clamp
recordings from hippocampal mossy fiber boutons, sheds light on the mechanisms
of synaptic transmission and plasticity at mossy fiber synapses. A high Na(+)
channel density in mossy fiber boutons leads to a large amplitude of the presynaptic
action potential. Together with the fast gating of presynaptic Ca(2+) channels,
this generates a large and brief presynaptic Ca(2+) influx, which can trigger
transmitter release with high efficiency and temporal precision. The large number
of release sites, the large size of the releasable pool of vesicles, and the huge
extent of presynaptic plasticity confer unique strength to this synapse, suggesting
a large impact onto the CA3 pyramidal cell network under specific behavioral conditions.
The characteristic properties of the hippocampal mossy fiber synapse may be important
for pattern separation and information storage in the dentate gyrus-CA3 cell network.
author:
- first_name: Josef
full_name: Bischofberger, Josef
last_name: Bischofberger
- first_name: Dominique
full_name: Engel, Dominique
last_name: Engel
- first_name: Michael
full_name: Frotscher, Michael
last_name: Frotscher
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: 'Bischofberger J, Engel D, Frotscher M, Jonas PM. Timing and efficacy of transmitter
release at mossy fiber synapses in the hippocampal network. Pflugers Archiv :
European Journal of Physiology. 2006;453(3):361-372. doi:10.1007/s00424-006-0093-2'
apa: 'Bischofberger, J., Engel, D., Frotscher, M., & Jonas, P. M. (2006). Timing
and efficacy of transmitter release at mossy fiber synapses in the hippocampal
network. Pflugers Archiv : European Journal of Physiology. Springer. https://doi.org/10.1007/s00424-006-0093-2'
chicago: 'Bischofberger, Josef, Dominique Engel, Michael Frotscher, and Peter M
Jonas. “Timing and Efficacy of Transmitter Release at Mossy Fiber Synapses in
the Hippocampal Network.” Pflugers Archiv : European Journal of Physiology.
Springer, 2006. https://doi.org/10.1007/s00424-006-0093-2.'
ieee: 'J. Bischofberger, D. Engel, M. Frotscher, and P. M. Jonas, “Timing and efficacy
of transmitter release at mossy fiber synapses in the hippocampal network,” Pflugers
Archiv : European Journal of Physiology, vol. 453, no. 3. Springer, pp. 361–72,
2006.'
ista: 'Bischofberger J, Engel D, Frotscher M, Jonas PM. 2006. Timing and efficacy
of transmitter release at mossy fiber synapses in the hippocampal network. Pflugers
Archiv : European Journal of Physiology. 453(3), 361–72.'
mla: 'Bischofberger, Josef, et al. “Timing and Efficacy of Transmitter Release at
Mossy Fiber Synapses in the Hippocampal Network.” Pflugers Archiv : European
Journal of Physiology, vol. 453, no. 3, Springer, 2006, pp. 361–72, doi:10.1007/s00424-006-0093-2.'
short: 'J. Bischofberger, D. Engel, M. Frotscher, P.M. Jonas, Pflugers Archiv :
European Journal of Physiology 453 (2006) 361–72.'
date_created: 2018-12-11T12:05:19Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:52:24Z
day: '01'
doi: 10.1007/s00424-006-0093-2
extern: 1
intvolume: ' 453'
issue: '3'
month: '01'
page: 361 - 72
publication: 'Pflugers Archiv : European Journal of Physiology'
publication_status: published
publisher: Springer
publist_id: '2396'
quality_controlled: 0
status: public
title: Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal
network
type: journal_article
volume: 453
year: '2006'
...
---
_id: '3811'
abstract:
- lang: eng
text: Networks of GABAergic neurons are key elements in the generation of gamma
oscillations in the brain. Computational studies suggested that the emergence
of coherent oscillations requires hyperpolarizing inhibition. Here, we show that
GABA(A) receptor-mediated inhibition in mature interneurons of the hippocampal
dentate gyrus is shunting rather than hyperpolarizing. Unexpectedly, when shunting
inhibition is incorporated into a structured interneuron network model with fast
and strong synapses, coherent oscillations emerge. In comparison to hyperpolarizing
inhibition, networks with shunting inhibition show several advantages. First,
oscillations are generated with smaller tonic excitatory drive. Second, network
frequencies are tuned to the gamma band. Finally, robustness against heterogeneity
in the excitatory drive is markedly improved. In single interneurons, shunting
inhibition shortens the interspike interval for low levels of drive but prolongs
it for high levels, leading to homogenization of neuronal firing rates. Thus,
shunting inhibition may confer increased robustness to gamma oscillations in the
brain.
author:
- first_name: Imre
full_name: Vida, Imre
last_name: Vida
- first_name: Marlene
full_name: Bartos, Marlene
last_name: Bartos
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Vida I, Bartos M, Jonas PM. Shunting inhibition improves robustness of gamma
oscillations in hippocampal interneuron networks by homogenizing firing rates.
Neuron. 2006;49(1):107-117. doi:10.1016/j.neuron.2005.11.036
apa: Vida, I., Bartos, M., & Jonas, P. M. (2006). Shunting inhibition improves
robustness of gamma oscillations in hippocampal interneuron networks by homogenizing
firing rates. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2005.11.036
chicago: Vida, Imre, Marlene Bartos, and Peter M Jonas. “Shunting Inhibition Improves
Robustness of Gamma Oscillations in Hippocampal Interneuron Networks by Homogenizing
Firing Rates.” Neuron. Elsevier, 2006. https://doi.org/10.1016/j.neuron.2005.11.036.
ieee: I. Vida, M. Bartos, and P. M. Jonas, “Shunting inhibition improves robustness
of gamma oscillations in hippocampal interneuron networks by homogenizing firing
rates,” Neuron, vol. 49, no. 1. Elsevier, pp. 107–17, 2006.
ista: Vida I, Bartos M, Jonas PM. 2006. Shunting inhibition improves robustness
of gamma oscillations in hippocampal interneuron networks by homogenizing firing
rates. Neuron. 49(1), 107–17.
mla: Vida, Imre, et al. “Shunting Inhibition Improves Robustness of Gamma Oscillations
in Hippocampal Interneuron Networks by Homogenizing Firing Rates.” Neuron,
vol. 49, no. 1, Elsevier, 2006, pp. 107–17, doi:10.1016/j.neuron.2005.11.036.
short: I. Vida, M. Bartos, P.M. Jonas, Neuron 49 (2006) 107–17.
date_created: 2018-12-11T12:05:18Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:52:22Z
day: '01'
doi: 10.1016/j.neuron.2005.11.036
extern: 1
intvolume: ' 49'
issue: '1'
month: '01'
page: 107 - 17
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '2398'
quality_controlled: 0
status: public
title: Shunting inhibition improves robustness of gamma oscillations in hippocampal
interneuron networks by homogenizing firing rates
type: journal_article
volume: 49
year: '2006'
...
---
_id: '3817'
author:
- first_name: Michael
full_name: Frotscher, Michael
last_name: Frotscher
- first_name: Eckart
full_name: Gundelfinger, Eckart
last_name: Gundelfinger
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
- first_name: Erwin
full_name: Neher, Erwin
last_name: Neher
- first_name: Peter
full_name: Seeburg, Peter
last_name: Seeburg
citation:
ama: Frotscher M, Gundelfinger E, Jonas PM, Neher E, Seeburg P. The most important
recent advances in synapse research from my point of view--and what remains to
be done. Cell and Tissue Research. 2006;326(2):203-204. doi:10.1007/s00441-006-0325-y
apa: Frotscher, M., Gundelfinger, E., Jonas, P. M., Neher, E., & Seeburg, P.
(2006). The most important recent advances in synapse research from my point of
view--and what remains to be done. Cell and Tissue Research. Springer.
https://doi.org/10.1007/s00441-006-0325-y
chicago: Frotscher, Michael, Eckart Gundelfinger, Peter M Jonas, Erwin Neher, and
Peter Seeburg. “The Most Important Recent Advances in Synapse Research from My
Point of View--and What Remains to Be Done.” Cell and Tissue Research.
Springer, 2006. https://doi.org/10.1007/s00441-006-0325-y.
ieee: M. Frotscher, E. Gundelfinger, P. M. Jonas, E. Neher, and P. Seeburg, “The
most important recent advances in synapse research from my point of view--and
what remains to be done,” Cell and Tissue Research, vol. 326, no. 2. Springer,
pp. 203–4, 2006.
ista: Frotscher M, Gundelfinger E, Jonas PM, Neher E, Seeburg P. 2006. The most
important recent advances in synapse research from my point of view--and what
remains to be done. Cell and Tissue Research. 326(2), 203–4.
mla: Frotscher, Michael, et al. “The Most Important Recent Advances in Synapse Research
from My Point of View--and What Remains to Be Done.” Cell and Tissue Research,
vol. 326, no. 2, Springer, 2006, pp. 203–04, doi:10.1007/s00441-006-0325-y.
short: M. Frotscher, E. Gundelfinger, P.M. Jonas, E. Neher, P. Seeburg, Cell and
Tissue Research 326 (2006) 203–4.
date_created: 2018-12-11T12:05:20Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:52:24Z
day: '01'
doi: 10.1007/s00441-006-0325-y
extern: 1
intvolume: ' 326'
issue: '2'
month: '01'
page: 203 - 4
publication: Cell and Tissue Research
publication_status: published
publisher: Springer
publist_id: '2394'
quality_controlled: 0
status: public
title: The most important recent advances in synapse research from my point of view--and
what remains to be done
type: journal_article
volume: 326
year: '2006'
...
---
_id: '3912'
abstract:
- lang: eng
text: Invasive species often dramatically change native species communities by directly
and indirectly out-competing native species. We studied the direct interference
abilities of the invasive garden ant, Lasius neglectus VAN LOON, BOOMSMA &
ANDRÁSFALVY, 1990, by performing one-to-one aggression tests of L. neglectus workers
towards three native Lasius ant species that occur at the edge of a L. neglectus
supercolony in Seva, Spain. Our results show that L. neglectus is highly aggressive
against all three native Lasius species tested (L. grandis FOREL, 1909, L. emarginatus
(OLIVIER, 1792), and L. cinereus SEIFERT, 1992), expressed as a higher attack
rate of L. neglectus and behavioural dominance throughout the aggressive encounters.
Attacks of L. neglectus were performed fastest and most frequent against L. grandis,
and also the highest antennation frequencies were observed in encounters between
these two species. This could be due to the largest difference in body size, or
due to a greater overlap in ecological niche between L. neglectus and L. grandis
compared to the other two native species. There was only weak support for L. neglectus
workers from the periphery of the supercolony to be more aggressive relative to
workers from the centre, even though the former encounter native ant species on
a daily basis at the edge of the supercolony.
author:
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
- first_name: Line V
full_name: Ugelvig, Line V
id: 3DC97C8E-F248-11E8-B48F-1D18A9856A87
last_name: Ugelvig
orcid: 0000-0003-1832-8883
- first_name: Suzanne
full_name: Lommen, Suzanne
last_name: Lommen
- first_name: Klaus
full_name: Petersen, Klaus
last_name: Petersen
- first_name: Jes
full_name: Pedersen, Jes
last_name: Pedersen
citation:
ama: 'Cremer S, Ugelvig LV, Lommen S, Petersen K, Pedersen J. Attack of the invasive
garden ant: aggression behaviour of Lasius neglectus (Hymenoptera: Formicidae)
against native Lasius species in Spain. Myrmecological News. 2006;9:13-19.'
apa: 'Cremer, S., Ugelvig, L. V., Lommen, S., Petersen, K., & Pedersen, J. (2006).
Attack of the invasive garden ant: aggression behaviour of Lasius neglectus (Hymenoptera:
Formicidae) against native Lasius species in Spain. Myrmecological News.
Österreichische Gesellschaft für Entomofaunistik.'
chicago: 'Cremer, Sylvia, Line V Ugelvig, Suzanne Lommen, Klaus Petersen, and Jes
Pedersen. “Attack of the Invasive Garden Ant: Aggression Behaviour of Lasius Neglectus
(Hymenoptera: Formicidae) against Native Lasius Species in Spain.” Myrmecological
News. Österreichische Gesellschaft für Entomofaunistik, 2006.'
ieee: 'S. Cremer, L. V. Ugelvig, S. Lommen, K. Petersen, and J. Pedersen, “Attack
of the invasive garden ant: aggression behaviour of Lasius neglectus (Hymenoptera:
Formicidae) against native Lasius species in Spain,” Myrmecological News,
vol. 9. Österreichische Gesellschaft für Entomofaunistik, pp. 13–19, 2006.'
ista: 'Cremer S, Ugelvig LV, Lommen S, Petersen K, Pedersen J. 2006. Attack of the
invasive garden ant: aggression behaviour of Lasius neglectus (Hymenoptera: Formicidae)
against native Lasius species in Spain. Myrmecological News. 9, 13–19.'
mla: 'Cremer, Sylvia, et al. “Attack of the Invasive Garden Ant: Aggression Behaviour
of Lasius Neglectus (Hymenoptera: Formicidae) against Native Lasius Species in
Spain.” Myrmecological News, vol. 9, Österreichische Gesellschaft für Entomofaunistik,
2006, pp. 13–19.'
short: S. Cremer, L.V. Ugelvig, S. Lommen, K. Petersen, J. Pedersen, Myrmecological
News 9 (2006) 13–19.
date_created: 2018-12-11T12:05:51Z
date_published: 2006-12-01T00:00:00Z
date_updated: 2021-01-12T07:53:09Z
day: '01'
extern: '1'
intvolume: ' 9'
language:
- iso: eng
month: '12'
oa_version: None
page: 13 - 19
publication: Myrmecological News
publication_status: published
publisher: Österreichische Gesellschaft für Entomofaunistik
publist_id: '2239'
status: public
title: 'Attack of the invasive garden ant: aggression behaviour of Lasius neglectus
(Hymenoptera: Formicidae) against native Lasius species in Spain'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2006'
...
---
_id: '3914'
abstract:
- lang: eng
text: We compare the performances of established means of character selection for
discriminant analysis in species distinction with a combination procedure for
finding the optimal character combination (minimum classification error, minimum
number of required characters), using morphometric data sets from the ant genera
Cardiocondyla, Lasius and Tetramorium. The established methods are empirical character
selection as well as forward selection, backward elimination and stepwise selection
of discriminant analysis. The combination procedure is clearly superior to the
established methods of character selection, and is widely applicable.
author:
- first_name: Karl
full_name: Moder, Karl
last_name: Moder
- first_name: Birgit
full_name: Schlick Steiner, Birgit
last_name: Schlick Steiner
- first_name: Florian
full_name: Steiner, Florian
last_name: Steiner
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
- first_name: Erhard
full_name: Christian, Erhard
last_name: Christian
- first_name: Bernhard
full_name: Seifert, Bernhard
last_name: Seifert
citation:
ama: 'Moder K, Schlick Steiner B, Steiner F, Cremer S, Christian E, Seifert B. Optimal
species distinction by discriminant analysis: comparing established methods of
character selection with a combination procedure using ant morphometrics as a
case study. Journal of Zoological Systematics and Evolutionary Research.
2006;45(1):82-87. doi:10.1111/j.1439-0469.2006.00372.x'
apa: 'Moder, K., Schlick Steiner, B., Steiner, F., Cremer, S., Christian, E., &
Seifert, B. (2006). Optimal species distinction by discriminant analysis: comparing
established methods of character selection with a combination procedure using
ant morphometrics as a case study. Journal of Zoological Systematics and Evolutionary
Research. Wiley-Blackwell. https://doi.org/10.1111/j.1439-0469.2006.00372.x'
chicago: 'Moder, Karl, Birgit Schlick Steiner, Florian Steiner, Sylvia Cremer, Erhard
Christian, and Bernhard Seifert. “Optimal Species Distinction by Discriminant
Analysis: Comparing Established Methods of Character Selection with a Combination
Procedure Using Ant Morphometrics as a Case Study.” Journal of Zoological Systematics
and Evolutionary Research. Wiley-Blackwell, 2006. https://doi.org/10.1111/j.1439-0469.2006.00372.x.'
ieee: 'K. Moder, B. Schlick Steiner, F. Steiner, S. Cremer, E. Christian, and B.
Seifert, “Optimal species distinction by discriminant analysis: comparing established
methods of character selection with a combination procedure using ant morphometrics
as a case study,” Journal of Zoological Systematics and Evolutionary Research,
vol. 45, no. 1. Wiley-Blackwell, pp. 82–87, 2006.'
ista: 'Moder K, Schlick Steiner B, Steiner F, Cremer S, Christian E, Seifert B.
2006. Optimal species distinction by discriminant analysis: comparing established
methods of character selection with a combination procedure using ant morphometrics
as a case study. Journal of Zoological Systematics and Evolutionary Research.
45(1), 82–87.'
mla: 'Moder, Karl, et al. “Optimal Species Distinction by Discriminant Analysis:
Comparing Established Methods of Character Selection with a Combination Procedure
Using Ant Morphometrics as a Case Study.” Journal of Zoological Systematics
and Evolutionary Research, vol. 45, no. 1, Wiley-Blackwell, 2006, pp. 82–87,
doi:10.1111/j.1439-0469.2006.00372.x.'
short: K. Moder, B. Schlick Steiner, F. Steiner, S. Cremer, E. Christian, B. Seifert,
Journal of Zoological Systematics and Evolutionary Research 45 (2006) 82–87.
date_created: 2018-12-11T12:05:52Z
date_published: 2006-08-29T00:00:00Z
date_updated: 2021-01-12T07:53:10Z
day: '29'
doi: 10.1111/j.1439-0469.2006.00372.x
extern: '1'
intvolume: ' 45'
issue: '1'
language:
- iso: eng
month: '08'
oa_version: None
page: 82 - 87
publication: Journal of Zoological Systematics and Evolutionary Research
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2241'
status: public
title: 'Optimal species distinction by discriminant analysis: comparing established
methods of character selection with a combination procedure using ant morphometrics
as a case study'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 45
year: '2006'
...
---
_id: '3913'
abstract:
- lang: eng
text: Many invasive ant species, such as the Argentine ant or the red imported fire
ant, have huge colonies with thousands of mass-foraging workers, which quickly
monopolise resources and therefore represent a considerable threat to the native
ant fauna. Cardiocondyla obscurior and several other species of this myrmicine
genus have similarly been transferred throughout the tropics by human activities.
However, because their colonies are tiny and workers forage solitarily, Cardiocondyla
are often not recognized as successful invaders. Here, we document that the life
history of Cardiocondyla closely resembles that of the more conspicuous tramp
species, with polygyny, intranidal mating, budding, worker sterility, low genetic
variability, and possibly also unicoloniality. Given that introduced Cardiocondyla
may locally reach a very high population density, the effects of these stealthy
invaders on the native arthropod fauna should receive more attention.
author:
- first_name: Jürgen
full_name: Heinze, Jürgen
last_name: Heinze
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
- first_name: Norbert
full_name: Eckl, Norbert
last_name: Eckl
- first_name: Alexandra
full_name: Schrempf, Alexandra
last_name: Schrempf
citation:
ama: 'Heinze J, Cremer S, Eckl N, Schrempf A. Stealthy invaders: the biology of
Cardiocondyla tramp ants. Insectes Sociaux. 2006;53(1):1-7. doi:10.1007/s00040-005-0847-4'
apa: 'Heinze, J., Cremer, S., Eckl, N., & Schrempf, A. (2006). Stealthy invaders:
the biology of Cardiocondyla tramp ants. Insectes Sociaux. Springer. https://doi.org/10.1007/s00040-005-0847-4'
chicago: 'Heinze, Jürgen, Sylvia Cremer, Norbert Eckl, and Alexandra Schrempf. “Stealthy
Invaders: The Biology of Cardiocondyla Tramp Ants.” Insectes Sociaux. Springer,
2006. https://doi.org/10.1007/s00040-005-0847-4.'
ieee: 'J. Heinze, S. Cremer, N. Eckl, and A. Schrempf, “Stealthy invaders: the biology
of Cardiocondyla tramp ants,” Insectes Sociaux, vol. 53, no. 1. Springer,
pp. 1–7, 2006.'
ista: 'Heinze J, Cremer S, Eckl N, Schrempf A. 2006. Stealthy invaders: the biology
of Cardiocondyla tramp ants. Insectes Sociaux. 53(1), 1–7.'
mla: 'Heinze, Jürgen, et al. “Stealthy Invaders: The Biology of Cardiocondyla Tramp
Ants.” Insectes Sociaux, vol. 53, no. 1, Springer, 2006, pp. 1–7, doi:10.1007/s00040-005-0847-4.'
short: J. Heinze, S. Cremer, N. Eckl, A. Schrempf, Insectes Sociaux 53 (2006) 1–7.
date_created: 2018-12-11T12:05:51Z
date_published: 2006-02-01T00:00:00Z
date_updated: 2021-01-12T07:53:09Z
day: '01'
doi: 10.1007/s00040-005-0847-4
extern: '1'
intvolume: ' 53'
issue: '1'
language:
- iso: eng
month: '02'
oa_version: None
page: 1 - 7
publication: Insectes Sociaux
publication_status: published
publisher: Springer
publist_id: '2240'
status: public
title: 'Stealthy invaders: the biology of Cardiocondyla tramp ants'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 53
year: '2006'
...
---
_id: '3932'
abstract:
- lang: eng
text: 'OBJECTIVES: The EGFR is expressed in malignant ovarian tumor tissue, and
tissue content of EGFR has been directly associated with poor prognosis in patients
with ovarian cancer. The uPA system plays a role in pericellular proteolysis,
cell migration, invasion, and is over-expressed in ovarian cancer. This study
explored the effects of EGF on uPAR expression in the ovarian cancer cell line
OVCAR-3. METHODS: We used OVCAR-3 cells and the following methods: cell migration
assay, time-lapse video microscopy, real-time PCR, assays for cellular binding
of 125I-uPA and cellular degradation of 125I-uPA:PAI-1 complex, biosynthetic labeling
using 35S-methionin, Western blot, Northern blot, and ELISAs for uPA, PAI-1, and
uPAR. RESULTS: EGF up-regulates both protein and mRNA not only for uPAR, but also
for the ligand uPA and its inhibitor PAI-1. Cell surface uPAR, in control as well
as EGF-stimulated cells, is present only in the intact, not the cleaved, form.
Ligand binding experiments showed an increase of endogenously occupied uPAR, whereas
non-occupied receptor sites were not increased. In addition, EGF treatment resulted
in decreased degradation of radiolabeled uPA:PAI-1 complex. This suggests decreased
internalization of uPAR, since the complex is internalized together with uPAR.
Like EGF, colchicine, which inhibits endocytosis, increased cell surface expression
of uPAR. In addition, we found an immediate increase of uPAR after exposing the
cells to EGF and this was accompanied by a transient increase of cell migration.
The increase of cell surface uPAR in response to EGF is accompanied by increased
release of the soluble form of uPAR (suPAR) to the medium as well as by increased
cell migration. Both uPAR and suPAR increased in cells treated with the endocytosis
inhibitor colchicine even though cell migration was inhibited, suggesting that
the mechanism of uPAR shedding is not related to cell migration. CONCLUSION: Increased
cell surface uPAR in response to EGF stimulation results from mobilization of
uPAR from detergent-resistant domains, increased expression of uPAR mRNA, and
decreased internalization and degradation of uPAR. Both the anti-uPAR antibody
R3, which inhibits binding of uPA, and the EGFR phosphorylation inhibitor Iressa
inhibited cell migration in response to uPA as well as to EGF, suggesting that
EGFR and uPAR are engaged in the same multiprotein assembly on the cell surface.'
author:
- first_name: Emir
full_name: Henic, Emir
last_name: Henic
- first_name: Michael K
full_name: Michael Sixt
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
- first_name: Stefan
full_name: Hansson, Stefan
last_name: Hansson
- first_name: Gunilla
full_name: Høyer-Hansen, Gunilla
last_name: Høyer Hansen
- first_name: Bertil
full_name: Casslén, Bertil
last_name: Casslén
citation:
ama: Henic E, Sixt MK, Hansson S, Høyer Hansen G, Casslén B. EGF-stimulated migration
in ovarian cancer cells is associated with decreased internalization, increased
surface expression, and increased shedding of the urokinase plasminogen activator
receptor. Gynecologic Oncology. 2006;101(1):28-39. doi:10.1016/j.ygyno.2005.09.038
apa: Henic, E., Sixt, M. K., Hansson, S., Høyer Hansen, G., & Casslén, B. (2006).
EGF-stimulated migration in ovarian cancer cells is associated with decreased
internalization, increased surface expression, and increased shedding of the urokinase
plasminogen activator receptor. Gynecologic Oncology. Elsevier. https://doi.org/10.1016/j.ygyno.2005.09.038
chicago: Henic, Emir, Michael K Sixt, Stefan Hansson, Gunilla Høyer Hansen, and
Bertil Casslén. “EGF-Stimulated Migration in Ovarian Cancer Cells Is Associated
with Decreased Internalization, Increased Surface Expression, and Increased Shedding
of the Urokinase Plasminogen Activator Receptor.” Gynecologic Oncology.
Elsevier, 2006. https://doi.org/10.1016/j.ygyno.2005.09.038.
ieee: E. Henic, M. K. Sixt, S. Hansson, G. Høyer Hansen, and B. Casslén, “EGF-stimulated
migration in ovarian cancer cells is associated with decreased internalization,
increased surface expression, and increased shedding of the urokinase plasminogen
activator receptor,” Gynecologic Oncology, vol. 101, no. 1. Elsevier, pp.
28–39, 2006.
ista: Henic E, Sixt MK, Hansson S, Høyer Hansen G, Casslén B. 2006. EGF-stimulated
migration in ovarian cancer cells is associated with decreased internalization,
increased surface expression, and increased shedding of the urokinase plasminogen
activator receptor. Gynecologic Oncology. 101(1), 28–39.
mla: Henic, Emir, et al. “EGF-Stimulated Migration in Ovarian Cancer Cells Is Associated
with Decreased Internalization, Increased Surface Expression, and Increased Shedding
of the Urokinase Plasminogen Activator Receptor.” Gynecologic Oncology,
vol. 101, no. 1, Elsevier, 2006, pp. 28–39, doi:10.1016/j.ygyno.2005.09.038.
short: E. Henic, M.K. Sixt, S. Hansson, G. Høyer Hansen, B. Casslén, Gynecologic
Oncology 101 (2006) 28–39.
date_created: 2018-12-11T12:05:57Z
date_published: 2006-04-01T00:00:00Z
date_updated: 2021-01-12T07:53:17Z
day: '01'
doi: 10.1016/j.ygyno.2005.09.038
extern: 1
intvolume: ' 101'
issue: '1'
month: '04'
page: 28 - 39
publication: Gynecologic Oncology
publication_status: published
publisher: Elsevier
publist_id: '2194'
quality_controlled: 0
status: public
title: EGF-stimulated migration in ovarian cancer cells is associated with decreased
internalization, increased surface expression, and increased shedding of the urokinase
plasminogen activator receptor
type: journal_article
volume: 101
year: '2006'
...
---
_id: '3978'
abstract:
- lang: eng
text: Evaluating the quality of experimentally determined protein structural models
is an essential step toward identifying potential errors and guiding further structural
refinement. Herein, we report the use of proton local density as a sensitive measure
to assess the quality of nuclear magnetic resonance (NMR) structures. Using 256
high-resolution crystal structures with protons added and optimized, we show that
the local density of different proton types display distinct distributions. These
distributions can be characterized by statistical moments and are used to establish
local density Z-scores for evaluating both global and local packing for individual
protons. Analysis of 546 crystal structures at various resolutions shows that
the local density Z-scores increase as the structural resolution decreases and
correlate well with the ClashScore (Word et al. J Mol Biol 1999;285(4):1711-1733)
generated by all atom contact analysis. Local density Z-scores for NMR structures
exhibit a significantly wider range of values than for X-ray structures and demonstrate
a combination of potentially problematic inflation and compression. Water-refined
NMR structures show improved packing quality. Our analysis of a high-quality structural
ensemble of ubiquitin refined against order parameters shows proton density distributions
that correlate nearly perfectly with our standards derived from crystal structures,
further validating our approach. We present an automated analysis and visualization
tool for proton packing to evaluate the quality of NMR structures.
author:
- first_name: Yih
full_name: Ban, Yih-En Andrew
last_name: Ban
- first_name: Johannes
full_name: Rudolph, Johannes
last_name: Rudolph
- first_name: Pei
full_name: Zhou, Pei
last_name: Zhou
- first_name: Herbert
full_name: Herbert Edelsbrunner
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Ban Y, Rudolph J, Zhou P, Edelsbrunner H. Evaluating the quality of NMR structures
by local density of protons. Proteins: Structure, Function and Bioinformatics.
2006;62(4):852-864. doi:10.1002/prot.20811'
apa: 'Ban, Y., Rudolph, J., Zhou, P., & Edelsbrunner, H. (2006). Evaluating
the quality of NMR structures by local density of protons. Proteins: Structure,
Function and Bioinformatics. Wiley-Blackwell. https://doi.org/10.1002/prot.20811'
chicago: 'Ban, Yih, Johannes Rudolph, Pei Zhou, and Herbert Edelsbrunner. “Evaluating
the Quality of NMR Structures by Local Density of Protons.” Proteins: Structure,
Function and Bioinformatics. Wiley-Blackwell, 2006. https://doi.org/10.1002/prot.20811.'
ieee: 'Y. Ban, J. Rudolph, P. Zhou, and H. Edelsbrunner, “Evaluating the quality
of NMR structures by local density of protons,” Proteins: Structure, Function
and Bioinformatics, vol. 62, no. 4. Wiley-Blackwell, pp. 852–864, 2006.'
ista: 'Ban Y, Rudolph J, Zhou P, Edelsbrunner H. 2006. Evaluating the quality of
NMR structures by local density of protons. Proteins: Structure, Function and
Bioinformatics. 62(4), 852–864.'
mla: 'Ban, Yih, et al. “Evaluating the Quality of NMR Structures by Local Density
of Protons.” Proteins: Structure, Function and Bioinformatics, vol. 62,
no. 4, Wiley-Blackwell, 2006, pp. 852–64, doi:10.1002/prot.20811.'
short: 'Y. Ban, J. Rudolph, P. Zhou, H. Edelsbrunner, Proteins: Structure, Function
and Bioinformatics 62 (2006) 852–864.'
date_created: 2018-12-11T12:06:14Z
date_published: 2006-03-01T00:00:00Z
date_updated: 2021-01-12T07:53:36Z
day: '01'
doi: 10.1002/prot.20811
extern: 1
intvolume: ' 62'
issue: '4'
month: '03'
page: 852 - 864
publication: 'Proteins: Structure, Function and Bioinformatics'
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2146'
quality_controlled: 0
status: public
title: Evaluating the quality of NMR structures by local density of protons
type: journal_article
volume: 62
year: '2006'
...
---
_id: '3979'
abstract:
- lang: eng
text: Protein-protein interactions, which form the basis for most cellular processes,
result in the formation of protein interfaces. Believing that the local shape
of proteins is crucial, we take a geometric approach and present a definition
of an interface surface formed by two or more proteins as a subset of their Voronoi
diagram. The definition deals with the difficult and important problem of specifying
interface boundaries by invoking methods used in the alpha shape representation
of molecules, the discrete flow on Delaunay simplices to define pockets and reconstruct
surfaces, and the assessment of the importance of topological features. We present
an algorithm to construct the surface and define a hierarchy that distinguishes
core and peripheral regions. This hierarchy is shown to have correlation with
hot-spots in protein-protein interactions. Finally, we study the geometric and
topological properties of interface surfaces and show their high degree of contortion.
author:
- first_name: Yih
full_name: Ban, Yih-En Andrew
last_name: Ban
- first_name: Herbert
full_name: Herbert Edelsbrunner
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Johannes
full_name: Rudolph, Johannes
last_name: Rudolph
citation:
ama: Ban Y, Edelsbrunner H, Rudolph J. Interface surfaces for protein-protein complexes.
Journal of the ACM. 2006;53(3):361-378. doi:10.1145/1147954.1147957
apa: Ban, Y., Edelsbrunner, H., & Rudolph, J. (2006). Interface surfaces for
protein-protein complexes. Journal of the ACM. ACM. https://doi.org/10.1145/1147954.1147957
chicago: Ban, Yih, Herbert Edelsbrunner, and Johannes Rudolph. “Interface Surfaces
for Protein-Protein Complexes.” Journal of the ACM. ACM, 2006. https://doi.org/10.1145/1147954.1147957.
ieee: Y. Ban, H. Edelsbrunner, and J. Rudolph, “Interface surfaces for protein-protein
complexes,” Journal of the ACM, vol. 53, no. 3. ACM, pp. 361–378, 2006.
ista: Ban Y, Edelsbrunner H, Rudolph J. 2006. Interface surfaces for protein-protein
complexes. Journal of the ACM. 53(3), 361–378.
mla: Ban, Yih, et al. “Interface Surfaces for Protein-Protein Complexes.” Journal
of the ACM, vol. 53, no. 3, ACM, 2006, pp. 361–78, doi:10.1145/1147954.1147957.
short: Y. Ban, H. Edelsbrunner, J. Rudolph, Journal of the ACM 53 (2006) 361–378.
date_created: 2018-12-11T12:06:14Z
date_published: 2006-05-01T00:00:00Z
date_updated: 2021-01-12T07:53:37Z
day: '01'
doi: 10.1145/1147954.1147957
extern: 1
intvolume: ' 53'
issue: '3'
month: '05'
page: 361 - 378
publication: Journal of the ACM
publication_status: published
publisher: ACM
publist_id: '2147'
quality_controlled: 0
status: public
title: Interface surfaces for protein-protein complexes
type: journal_article
volume: 53
year: '2006'
...
---
_id: '3980'
abstract:
- lang: eng
text: Given a smoothly embedded 2-manifold in R-3, we define the elevation of a
point as the height difference to a canonically defined second point on the same
manifold. Our definition is invariant under rigid motions and can be used to define
features such as lines of discontinuous or continuous but non-smooth elevation.
We give an algorithm for finding points of locally maximum elevation, which we
suggest mark cavities and protrusions and are useful in matching shapes as for
example in protein docking.
author:
- first_name: Pankaj
full_name: Agarwal, Pankaj K
last_name: Agarwal
- first_name: Herbert
full_name: Herbert Edelsbrunner
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: John
full_name: Harer, John
last_name: Harer
- first_name: Yusu
full_name: Wang, Yusu
last_name: Wang
citation:
ama: Agarwal P, Edelsbrunner H, Harer J, Wang Y. Extreme elevation on a 2-manifold.
Discrete & Computational Geometry. 2006;36(4):553-572. doi:10.1007/s00454-006-1265-8
apa: Agarwal, P., Edelsbrunner, H., Harer, J., & Wang, Y. (2006). Extreme elevation
on a 2-manifold. Discrete & Computational Geometry. Springer. https://doi.org/10.1007/s00454-006-1265-8
chicago: Agarwal, Pankaj, Herbert Edelsbrunner, John Harer, and Yusu Wang. “Extreme
Elevation on a 2-Manifold.” Discrete & Computational Geometry. Springer,
2006. https://doi.org/10.1007/s00454-006-1265-8.
ieee: P. Agarwal, H. Edelsbrunner, J. Harer, and Y. Wang, “Extreme elevation on
a 2-manifold,” Discrete & Computational Geometry, vol. 36, no. 4. Springer,
pp. 553–572, 2006.
ista: Agarwal P, Edelsbrunner H, Harer J, Wang Y. 2006. Extreme elevation on a 2-manifold.
Discrete & Computational Geometry. 36(4), 553–572.
mla: Agarwal, Pankaj, et al. “Extreme Elevation on a 2-Manifold.” Discrete &
Computational Geometry, vol. 36, no. 4, Springer, 2006, pp. 553–72, doi:10.1007/s00454-006-1265-8.
short: P. Agarwal, H. Edelsbrunner, J. Harer, Y. Wang, Discrete & Computational
Geometry 36 (2006) 553–572.
date_created: 2018-12-11T12:06:15Z
date_published: 2006-12-01T00:00:00Z
date_updated: 2021-01-12T07:53:38Z
day: '01'
doi: 10.1007/s00454-006-1265-8
extern: 1
intvolume: ' 36'
issue: '4'
month: '12'
page: 553 - 572
publication: Discrete & Computational Geometry
publication_status: published
publisher: Springer
publist_id: '2148'
quality_controlled: 0
status: public
title: Extreme elevation on a 2-manifold
type: journal_article
volume: 36
year: '2006'
...
---
_id: '4345'
abstract:
- lang: eng
text: Der Artikel beschäftigt sich mit dem Konzept der Bibliothek 2.0 (bzw. Library
2.0). Er skizziert anhand einiger Beispiele die Entwicklung zum Web 2.0 und beschreibt,
wie Web 2.0-Technologien und -Anwendungen in Bibliotheken eingesetzt werden. Im
Mittelpunkt stehen Social-Tagging-Systeme, benutzerorientierte Erweiterungen von
Bibliothekskatalogen und Dokumentenservern sowie der Einsatz von Weblogs an Bibliotheken.
Ferner werden neue Anforderungen an Bibliothekare diskutiert.
author:
- first_name: Patrick
full_name: Patrick Danowski
id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
last_name: Danowski
orcid: 0000-0002-6026-4409
- first_name: Lambert
full_name: Heller,Lambert
last_name: Heller
citation:
ama: Danowski P, Heller L. Bibliothek 2.0 - Die Bibliothek der Zukunft? Bibliotheksdienst.
2006;40(11):1250-1271. doi:424
apa: Danowski, P., & Heller, L. (2006). Bibliothek 2.0 - Die Bibliothek der
Zukunft? Bibliotheksdienst. Zentral- und Landesbibliothek Berlin. https://doi.org/424
chicago: Danowski, Patrick, and Lambert Heller. “Bibliothek 2.0 - Die Bibliothek
Der Zukunft?” Bibliotheksdienst. Zentral- und Landesbibliothek Berlin,
2006. https://doi.org/424.
ieee: P. Danowski and L. Heller, “Bibliothek 2.0 - Die Bibliothek der Zukunft?,”
Bibliotheksdienst, vol. 40, no. 11. Zentral- und Landesbibliothek Berlin,
pp. 1250–1271, 2006.
ista: Danowski P, Heller L. 2006. Bibliothek 2.0 - Die Bibliothek der Zukunft? Bibliotheksdienst.
40(11), 1250–1271.
mla: Danowski, Patrick, and Lambert Heller. “Bibliothek 2.0 - Die Bibliothek Der
Zukunft?” Bibliotheksdienst, vol. 40, no. 11, Zentral- und Landesbibliothek
Berlin, 2006, pp. 1250–71, doi:424.
short: P. Danowski, L. Heller, Bibliotheksdienst 40 (2006) 1250–1271.
date_created: 2018-12-11T12:08:23Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:56:17Z
day: '01'
doi: '424'
extern: 1
intvolume: ' 40'
issue: '11'
main_file_link:
- open_access: '0'
url: http://www.zlb.de/aktivitaeten/bd_neu/heftinhalte2006/DigitaleBib011106.pdf
month: '01'
page: 1250 - 1271
publication: Bibliotheksdienst
publication_status: published
publisher: Zentral- und Landesbibliothek Berlin
publist_id: '1229'
quality_controlled: 0
status: public
title: Bibliothek 2.0 - Die Bibliothek der Zukunft?
type: journal_article
volume: 40
year: '2006'
...
---
_id: '4352'
abstract:
- lang: eng
text: 'Anopheles darlingi is the primary malaria vector in Latin America, and is
especially important in Amazonian Brazil. Historically, control efforts have been
focused on indoor house spraying using a variety of insecticides, but since the
mid-1990s there has been a shift to patient treatment and focal insecticide fogging.
Anopheles darlingi was believed to have been significantly reduced in a gold-mining
community, Peixoto de Azevedo (in Mato Grosso State), in the early 1990s by insecticide
use during a severe malaria epidemic. In contrast, although An. darlingi was eradicated
from some districts of the city of Belem (the capital of Para State) in 1968 to
reduce malaria, populations around the water protection area in the eastern district
were treated only briefly. To investigate the population structure of An. darlingi
including evidence for a population bottleneck in Peixoto, we analyzed eight microsatellite
loci of 256 individuals from seven locations in Brazil: three in Amapa State,
three in Para State, and one in Mato Grosso State. Allelic diversity and mean
expected heterozygosity were high for all populations (mean number alleles/locus
and H(E) were 13.5 and 0.834, respectively) and did not differ significantly between
locations. Significant heterozygote deficits were associated with linkage disequilibrium,
most likely due to either the Wahlund effect or selection. We found no evidence
for a population bottleneck in Peixoto, possibly because the reduction was not
extreme enough to be detected. Overall estimates of long-term N(e) varied from
92.4 individuals under the linkage disequilibrium model to infinity under the
heterozygote excess model. Fixation indices and analysis of molecular variance
demonstrated significant differentiation between locations north and south of
the Amazon River, suggesting a degree of genetic isolation between them, attributed
to isolation by distance.'
author:
- first_name: Jan
full_name: Conn, Jan E
last_name: Conn
- first_name: Joseph
full_name: Vineis, Joseph H
last_name: Vineis
- first_name: Jonathan P
full_name: Jonathan Bollback
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
- first_name: David
full_name: Onyabe, David Y
last_name: Onyabe
- first_name: Richard
full_name: Wilkerson, Richard C
last_name: Wilkerson
- first_name: Marinete
full_name: Povoa, Marinete M
last_name: Povoa
citation:
ama: Conn J, Vineis J, Bollback JP, Onyabe D, Wilkerson R, Povoa M. Population structure
of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern
Amazonian Brazil. The American Journal of Tropical Medicine and Hygiene.
2006;74(5):798-806.
apa: Conn, J., Vineis, J., Bollback, J. P., Onyabe, D., Wilkerson, R., & Povoa,
M. (2006). Population structure of the malaria vector Anopheles darlingi in a
malaria-endemic region of eastern Amazonian Brazil. The American Journal of
Tropical Medicine and Hygiene. American Society of Tropical Medicine and Hygiene.
chicago: Conn, Jan, Joseph Vineis, Jonathan P Bollback, David Onyabe, Richard Wilkerson,
and Marinete Povoa. “Population Structure of the Malaria Vector Anopheles Darlingi
in a Malaria-Endemic Region of Eastern Amazonian Brazil.” The American Journal
of Tropical Medicine and Hygiene. American Society of Tropical Medicine and
Hygiene, 2006.
ieee: J. Conn, J. Vineis, J. P. Bollback, D. Onyabe, R. Wilkerson, and M. Povoa,
“Population structure of the malaria vector Anopheles darlingi in a malaria-endemic
region of eastern Amazonian Brazil,” The American Journal of Tropical Medicine
and Hygiene, vol. 74, no. 5. American Society of Tropical Medicine and Hygiene,
pp. 798–806, 2006.
ista: Conn J, Vineis J, Bollback JP, Onyabe D, Wilkerson R, Povoa M. 2006. Population
structure of the malaria vector Anopheles darlingi in a malaria-endemic region
of eastern Amazonian Brazil. The American Journal of Tropical Medicine and Hygiene.
74(5), 798–806.
mla: Conn, Jan, et al. “Population Structure of the Malaria Vector Anopheles Darlingi
in a Malaria-Endemic Region of Eastern Amazonian Brazil.” The American Journal
of Tropical Medicine and Hygiene, vol. 74, no. 5, American Society of Tropical
Medicine and Hygiene, 2006, pp. 798–806.
short: J. Conn, J. Vineis, J.P. Bollback, D. Onyabe, R. Wilkerson, M. Povoa, The
American Journal of Tropical Medicine and Hygiene 74 (2006) 798–806.
date_created: 2018-12-11T12:08:25Z
date_published: 2006-05-01T00:00:00Z
date_updated: 2021-01-12T07:56:20Z
day: '01'
extern: 1
intvolume: ' 74'
issue: '5'
main_file_link:
- open_access: '0'
url: http://www.ajtmh.org/content/74/5/798.full
month: '05'
page: 798 - 806
publication: The American Journal of Tropical Medicine and Hygiene
publication_status: published
publisher: American Society of Tropical Medicine and Hygiene
publist_id: '1108'
quality_controlled: 0
status: public
title: Population structure of the malaria vector Anopheles darlingi in a malaria-endemic
region of eastern Amazonian Brazil
type: journal_article
volume: 74
year: '2006'
...
---
_id: '4351'
abstract:
- lang: eng
text: 'BACKGROUND: Character mapping on phylogenies has played an important, if
not critical role, in our understanding of molecular, morphological, and behavioral
evolution. Until very recently we have relied on parsimony to infer character
changes. Parsimony has a number of serious limitations that are drawbacks to our
understanding. Recent statistical methods have been developed that free us from
these limitations enabling us to overcome the problems of parsimony by accommodating
uncertainty in evolutionary time, ancestral states, and the phylogeny. RESULTS:
SIMMAP has been developed to implement stochastic character mapping that is useful
to both molecular evolutionists, systematists, and bioinformaticians. Researchers
can address questions about positive selection, patterns of amino acid substitution,
character association, and patterns of morphological evolution. CONCLUSION: Stochastic
character mapping, as implemented in the SIMMAP software, enables users to address
questions that require mapping characters onto phylogenies using a probabilistic
approach that does not rely on parsimony. Analyses can be performed using a fully
Bayesian approach that is not reliant on considering a single topology, set of
substitution model parameters, or reconstruction of ancestral states. Uncertainty
in these quantities is accommodated by using MCMC samples from their respective
posterior distributions.'
author:
- first_name: Jonathan P
full_name: Jonathan Bollback
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
citation:
ama: 'Bollback JP. SIMMAP: stochastic character mapping of discrete traits on phylogenies.
BMC Bioinformatics. 2006;7. doi:10.1186/1471-2105-7-88'
apa: 'Bollback, J. P. (2006). SIMMAP: stochastic character mapping of discrete traits
on phylogenies. BMC Bioinformatics. BioMed Central. https://doi.org/10.1186/1471-2105-7-88'
chicago: 'Bollback, Jonathan P. “SIMMAP: Stochastic Character Mapping of Discrete
Traits on Phylogenies.” BMC Bioinformatics. BioMed Central, 2006. https://doi.org/10.1186/1471-2105-7-88.'
ieee: 'J. P. Bollback, “SIMMAP: stochastic character mapping of discrete traits
on phylogenies,” BMC Bioinformatics, vol. 7. BioMed Central, 2006.'
ista: 'Bollback JP. 2006. SIMMAP: stochastic character mapping of discrete traits
on phylogenies. BMC Bioinformatics. 7.'
mla: 'Bollback, Jonathan P. “SIMMAP: Stochastic Character Mapping of Discrete Traits
on Phylogenies.” BMC Bioinformatics, vol. 7, BioMed Central, 2006, doi:10.1186/1471-2105-7-88.'
short: J.P. Bollback, BMC Bioinformatics 7 (2006).
date_created: 2018-12-11T12:08:25Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T07:56:20Z
day: '01'
doi: 10.1186/1471-2105-7-88
extern: 1
intvolume: ' 7'
month: '01'
publication: BMC Bioinformatics
publication_status: published
publisher: BioMed Central
publist_id: '1109'
quality_controlled: 0
status: public
title: 'SIMMAP: stochastic character mapping of discrete traits on phylogenies'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
volume: 7
year: '2006'
...
---
_id: '3180'
abstract:
- lang: eng
text: 'One of the most exciting advances in early vision has been the development
of efficient energy minimization algorithms. Many early vision tasks require labeling
each pixel with some quantity such as depth or texture. While many such problems
can be elegantly expressed in the language of Markov Random Fields (MRF''s), the
resulting energy minimization problems were widely viewed as intractable. Recently,
algorithms such as graph cuts and loopy belief propagation (LBP) have proven to
be very powerful: for example, such methods form the basis for almost all the
top-performing stereo methods. Unfortunately, most papers define their own energy
function, which is minimized with a specific algorithm of their choice. As a result,
the tradeoffs among different energy minimization algorithms are not well understood.
In this paper we describe a set of energy minimization benchmarks, which we use
to compare the solution quality and running time of several common energy minimization
algorithms. We investigate three promising recent methods - graph cuts, LBP, and
tree-reweighted message passing - as well as the well-known older iterated conditional
modes (ICM) algorithm. Our benchmark problems are drawn from published energy
functions used for stereo, image stitching and interactive segmentation. We also
provide a general-purpose software interface that allows vision researchers to
easily switch between optimization methods with minimal overhead. We expect that
the availability of our benchmarks and interface will make it significantly easier
for vision researchers to adopt the best method for their specific problems. Benchmarks,
code, results and images are available at http://vision.middlebury.edu/MRF.'
author:
- first_name: Richard
full_name: Szeliski, Richard S
last_name: Szeliski
- first_name: Ramin
full_name: Zabih, Ramin
last_name: Zabih
- first_name: Daniel
full_name: Scharstein, Daniel
last_name: Scharstein
- first_name: Olga
full_name: Veksler, Olga
last_name: Veksler
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Aseem
full_name: Agarwala, Aseem
last_name: Agarwala
- first_name: Marshall
full_name: Tappen, Marshall F
last_name: Tappen
- first_name: Carsten
full_name: Rother, Carsten
last_name: Rother
citation:
ama: 'Szeliski R, Zabih R, Scharstein D, et al. A comparative study of energy minimization
methods for Markov random fields. In: Vol 3952. Springer; 2006:16-29. doi:10.1007/11744047_2'
apa: 'Szeliski, R., Zabih, R., Scharstein, D., Veksler, O., Kolmogorov, V., Agarwala,
A., … Rother, C. (2006). A comparative study of energy minimization methods for
Markov random fields (Vol. 3952, pp. 16–29). Presented at the ECCV: European Conference
on Computer Vision, Springer. https://doi.org/10.1007/11744047_2'
chicago: Szeliski, Richard, Ramin Zabih, Daniel Scharstein, Olga Veksler, Vladimir
Kolmogorov, Aseem Agarwala, Marshall Tappen, and Carsten Rother. “A Comparative
Study of Energy Minimization Methods for Markov Random Fields,” 3952:16–29. Springer,
2006. https://doi.org/10.1007/11744047_2.
ieee: 'R. Szeliski et al., “A comparative study of energy minimization methods
for Markov random fields,” presented at the ECCV: European Conference on Computer
Vision, 2006, vol. 3952, pp. 16–29.'
ista: 'Szeliski R, Zabih R, Scharstein D, Veksler O, Kolmogorov V, Agarwala A, Tappen
M, Rother C. 2006. A comparative study of energy minimization methods for Markov
random fields. ECCV: European Conference on Computer Vision vol. 3952, 16–29.'
mla: Szeliski, Richard, et al. A Comparative Study of Energy Minimization Methods
for Markov Random Fields. Vol. 3952, Springer, 2006, pp. 16–29, doi:10.1007/11744047_2.
short: R. Szeliski, R. Zabih, D. Scharstein, O. Veksler, V. Kolmogorov, A. Agarwala,
M. Tappen, C. Rother, in:, Springer, 2006, pp. 16–29.
conference:
name: 'ECCV: European Conference on Computer Vision'
date_created: 2018-12-11T12:01:51Z
date_published: 2006-05-03T00:00:00Z
date_updated: 2021-01-12T07:41:37Z
day: '03'
doi: 10.1007/11744047_2
extern: 1
intvolume: ' 3952'
main_file_link:
- open_access: '0'
url: http://research-srv.microsoft.com/pubs/67896/szsvkatr-eccv06.pdf
month: '05'
page: 16 - 29
publication_status: published
publisher: Springer
publist_id: '3499'
quality_controlled: 0
status: public
title: A comparative study of energy minimization methods for Markov random fields
type: conference
volume: 3952
year: '2006'
...