[{"author":[{"last_name":"Alistarh","orcid":"0000-0003-3650-940X","full_name":"Alistarh, Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","first_name":"Dan-Adrian"},{"full_name":"Aspnes, James","first_name":"James","last_name":"Aspnes"},{"first_name":"Seth","full_name":"Gilbert, Seth","last_name":"Gilbert"},{"last_name":"Guerraoui","first_name":"Rachid","full_name":"Guerraoui, Rachid"}],"publist_id":"6895","date_published":"2011-01-01T00:00:00Z","date_created":"2018-12-11T11:48:21Z","article_processing_charge":"No","abstract":[{"text":"We study the complexity of renaming, a fundamental problem in distributed computing in which a set of processes need to pick distinct names from a given namespace. We prove an individual lower bound of Ω(k) process steps for deterministic renaming into any namespace of size sub-exponential in k, where k is the number of participants. This bound is tight: it draws an exponential separation between deterministic and randomized solutions, and implies new tight bounds for deterministic fetch-and-increment registers, queues and stacks. The proof of the bound is interesting in its own right, for it relies on the first reduction from renaming to another fundamental problem in distributed computing: mutual exclusion. We complement our individual bound with a global lower bound of Ω(k log (k/c)) on the total step complexity of renaming into a namespace of size ck, for any c ≥ 1. This applies to randomized algorithms against a strong adversary, and helps derive new global lower bounds for randomized approximate counter and fetch-and-increment implementations, all tight within logarithmic factors.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","fulldoi":"https://doi.org/10.1109/FOCS.2011.66","conference":{"name":"FOCS: Foundations of Computer Science"},"publication_status":"published","day":"01","title":"The complexity of renaming","acknowledgement":"The authors would like to thank Hagit Attiya and Keren\r\nCensor-Hillel  for  discussions  and  feedback  on  earlier  versions  of  this  paper,  and  the  anonymous  reviewers  for  their\r\nvery useful suggestions.","oa_version":"None","type":"conference","page":"718 - 727","year":"2011","status":"public","citation":{"chicago":"Alistarh, Dan-Adrian, James Aspnes, Seth Gilbert, and Rachid Guerraoui. “The Complexity of Renaming,” 718–27. IEEE, 2011. <a href=\"https://doi.org/10.1109/FOCS.2011.66\">https://doi.org/10.1109/FOCS.2011.66</a>.","ista":"Alistarh D-A, Aspnes J, Gilbert S, Guerraoui R. 2011. The complexity of renaming. FOCS: Foundations of Computer Science, 718–727.","short":"D.-A. Alistarh, J. Aspnes, S. Gilbert, R. Guerraoui, in:, IEEE, 2011, pp. 718–727.","ama":"Alistarh D-A, Aspnes J, Gilbert S, Guerraoui R. The complexity of renaming. In: IEEE; 2011:718-727. doi:<a href=\"https://doi.org/10.1109/FOCS.2011.66\">10.1109/FOCS.2011.66</a>","mla":"Alistarh, Dan-Adrian, et al. <i>The Complexity of Renaming</i>. IEEE, 2011, pp. 718–27, doi:<a href=\"https://doi.org/10.1109/FOCS.2011.66\">10.1109/FOCS.2011.66</a>.","ieee":"D.-A. Alistarh, J. Aspnes, S. Gilbert, and R. Guerraoui, “The complexity of renaming,” presented at the FOCS: Foundations of Computer Science, 2011, pp. 718–727.","apa":"Alistarh, D.-A., Aspnes, J., Gilbert, S., &#38; Guerraoui, R. (2011). The complexity of renaming (pp. 718–727). Presented at the FOCS: Foundations of Computer Science, IEEE. <a href=\"https://doi.org/10.1109/FOCS.2011.66\">https://doi.org/10.1109/FOCS.2011.66</a>"},"_id":"759","doi":"10.1109/FOCS.2011.66","extern":"1","date_updated":"2023-02-23T13:11:40Z","month":"01","publisher":"IEEE","language":[{"iso":"eng"}]},{"type":"conference","volume":"6950 LNCS","page":"97 - 109","citation":{"chicago":"Alistarh, Dan-Adrian, and James Aspnes. “Sub-Logarithmic Test-and-Set against a Weak Adversary,” 6950 LNCS:97–109. Springer, 2011. <a href=\"https://doi.org/10.1007/978-3-642-24100-0_7\">https://doi.org/10.1007/978-3-642-24100-0_7</a>.","ista":"Alistarh D-A, Aspnes J. 2011. Sub-logarithmic test-and-set against a weak adversary. DISC: Distributed Computing, LNCS, vol. 6950 LNCS, 97–109.","short":"D.-A. Alistarh, J. Aspnes, in:, Springer, 2011, pp. 97–109.","mla":"Alistarh, Dan-Adrian, and James Aspnes. <i>Sub-Logarithmic Test-and-Set against a Weak Adversary</i>. Vol. 6950 LNCS, Springer, 2011, pp. 97–109, doi:<a href=\"https://doi.org/10.1007/978-3-642-24100-0_7\">10.1007/978-3-642-24100-0_7</a>.","ama":"Alistarh D-A, Aspnes J. Sub-logarithmic test-and-set against a weak adversary. In: Vol 6950 LNCS. Springer; 2011:97-109. doi:<a href=\"https://doi.org/10.1007/978-3-642-24100-0_7\">10.1007/978-3-642-24100-0_7</a>","ieee":"D.-A. Alistarh and J. Aspnes, “Sub-logarithmic test-and-set against a weak adversary,” presented at the DISC: Distributed Computing, 2011, vol. 6950 LNCS, pp. 97–109.","apa":"Alistarh, D.-A., &#38; Aspnes, J. (2011). Sub-logarithmic test-and-set against a weak adversary (Vol. 6950 LNCS, pp. 97–109). Presented at the DISC: Distributed Computing, Springer. <a href=\"https://doi.org/10.1007/978-3-642-24100-0_7\">https://doi.org/10.1007/978-3-642-24100-0_7</a>"},"alternative_title":["LNCS"],"year":"2011","status":"public","date_updated":"2023-02-23T13:12:01Z","_id":"760","doi":"10.1007/978-3-642-24100-0_7","extern":"1","publisher":"Springer","language":[{"iso":"eng"}],"month":"01","publist_id":"6896","author":[{"orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","first_name":"Dan-Adrian","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh"},{"full_name":"Aspnes, James","first_name":"James","last_name":"Aspnes"}],"date_created":"2018-12-11T11:48:21Z","date_published":"2011-01-01T00:00:00Z","fulldoi":"https://doi.org/10.1007/978-3-642-24100-0_7","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","abstract":[{"text":"A randomized implementation is given of a test-and-set register with O(log log n) individual step complexity and O(n) total step complexity against an oblivious adversary. The implementation is linearizable and multi-shot, and shows an exponential complexity improvement over previous solutions designed to work against a strong adversary.","lang":"eng"}],"acknowledgement":"The work of Dan Alistarh was supported by the NCCR MICS Project. The work of James Aspnes was supported in part by NSF grant CCF-0916389.","title":"Sub-logarithmic test-and-set against a weak adversary","oa_version":"None","conference":{"name":"DISC: Distributed Computing"},"day":"01","publication_status":"published"},{"type":"conference","page":"239 - 248","year":"2011","status":"public","citation":{"apa":"Alistarh, D.-A., Aspnes, J., Censor Hillel, K., Gilbert, S., &#38; Zadimoghaddam, M. (2011). Optimal-time adaptive strong renaming, with applications to counting (pp. 239–248). Presented at the PODC: Principles of Distributed Computing, ACM. <a href=\"https://doi.org/10.1145/1993806.1993850\">https://doi.org/10.1145/1993806.1993850</a>","ieee":"D.-A. Alistarh, J. Aspnes, K. Censor Hillel, S. Gilbert, and M. Zadimoghaddam, “Optimal-time adaptive strong renaming, with applications to counting,” presented at the PODC: Principles of Distributed Computing, 2011, pp. 239–248.","ama":"Alistarh D-A, Aspnes J, Censor Hillel K, Gilbert S, Zadimoghaddam M. Optimal-time adaptive strong renaming, with applications to counting. In: ACM; 2011:239-248. doi:<a href=\"https://doi.org/10.1145/1993806.1993850\">10.1145/1993806.1993850</a>","mla":"Alistarh, Dan-Adrian, et al. <i>Optimal-Time Adaptive Strong Renaming, with Applications to Counting</i>. ACM, 2011, pp. 239–48, doi:<a href=\"https://doi.org/10.1145/1993806.1993850\">10.1145/1993806.1993850</a>.","ista":"Alistarh D-A, Aspnes J, Censor Hillel K, Gilbert S, Zadimoghaddam M. 2011. Optimal-time adaptive strong renaming, with applications to counting. PODC: Principles of Distributed Computing, 239–248.","short":"D.-A. Alistarh, J. Aspnes, K. Censor Hillel, S. Gilbert, M. Zadimoghaddam, in:, ACM, 2011, pp. 239–248.","chicago":"Alistarh, Dan-Adrian, James Aspnes, Keren Censor Hillel, Seth Gilbert, and Morteza Zadimoghaddam. “Optimal-Time Adaptive Strong Renaming, with Applications to Counting,” 239–48. ACM, 2011. <a href=\"https://doi.org/10.1145/1993806.1993850\">https://doi.org/10.1145/1993806.1993850</a>."},"_id":"761","extern":"1","doi":"10.1145/1993806.1993850","date_updated":"2023-02-23T13:12:17Z","month":"01","publisher":"ACM","language":[{"iso":"eng"}],"author":[{"orcid":"0000-0003-3650-940X","first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh"},{"last_name":"Aspnes","full_name":"Aspnes, James","first_name":"James"},{"last_name":"Censor Hillel","full_name":"Censor Hillel, Keren","first_name":"Keren"},{"last_name":"Gilbert","first_name":"Seth","full_name":"Gilbert, Seth"},{"last_name":"Zadimoghaddam","first_name":"Morteza","full_name":"Zadimoghaddam, Morteza"}],"publist_id":"6897","date_published":"2011-01-01T00:00:00Z","date_created":"2018-12-11T11:48:22Z","article_processing_charge":"No","abstract":[{"lang":"eng","text":"We give two new randomized algorithms for strong renaming, both of which work against an adaptive adversary in asynchronous shared memory. The first uses repeated sampling over a sequence of arrays of decreasing size to assign unique names to each of n processes with step complexity O(log3 n). The second transforms any sorting network into a strong adaptive renaming protocol, with an expected cost equal to the depth of the sorting network. Using an AKS sorting network, this gives a strong adaptive renaming algorithm with step complexity O(log k), where k is the contention in the current execution. We show this to be optimal based on a classic lower bound of Jayanti. We also show that any such strong renaming protocol can be used to build a monotone-consistent counter with logarithmic step complexity (at the cost of adding a max register) or a linearizable fetch-and-increment register (at the cost of increasing the step complexity by a logarithmic factor)."}],"fulldoi":"https://doi.org/10.1145/1993806.1993850","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","conference":{"name":"PODC: Principles of Distributed Computing"},"day":"01","title":"Optimal-time adaptive strong renaming, with applications to counting","acknowledgement":"We would like to thank Hagit Attiya, Rachid Guerraoui\r\nand Prasad Jayanti for useful discussions and support.  We\r\nwould also like to thank the anonymous reviewers for many\r\nuseful comments.","oa_version":"None"},{"date_published":"2011-12-08T00:00:00Z","article_type":"original","date_created":"2020-04-30T10:36:12Z","author":[{"id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","full_name":"Sweeney, Lora Beatrice Jaeger","first_name":"Lora Beatrice Jaeger","orcid":"0000-0001-9242-5601","last_name":"Sweeney"},{"last_name":"Chou","first_name":"Ya-Hui","full_name":"Chou, Ya-Hui"},{"first_name":"Zhuhao","full_name":"Wu, Zhuhao","last_name":"Wu"},{"last_name":"Joo","first_name":"William","full_name":"Joo, William"},{"full_name":"Komiyama, Takaki","first_name":"Takaki","last_name":"Komiyama"},{"last_name":"Potter","full_name":"Potter, Christopher J.","first_name":"Christopher J."},{"first_name":"Alex L.","full_name":"Kolodkin, Alex L.","last_name":"Kolodkin"},{"first_name":"K. Christopher","full_name":"Garcia, K. Christopher","last_name":"Garcia"},{"first_name":"Liqun","full_name":"Luo, Liqun","last_name":"Luo"}],"day":"08","publication_status":"published","oa_version":"None","title":"Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting","abstract":[{"lang":"eng","text":"During assembly of the Drosophila olfactory circuit, projection neuron (PN) dendrites prepattern the developing antennal lobe before the arrival of axons from their presynaptic partners, the adult olfactory receptor neurons (ORNs). We previously found that levels of transmembrane Semaphorin-1a, which acts as a receptor, instruct PN dendrite targeting along the dorsolateral-ventromedial axis. Here we show that two secreted semaphorins, Sema-2a and Sema-2b, provide spatial cues for PN dendrite targeting. Sema-2a and Sema-2b proteins are distributed in gradients opposing the Sema-1a protein gradient, and Sema-1a binds to Sema-2a-expressing cells. In Sema-2a and Sema-2b double mutants, PN dendrites that normally target dorsolaterally in the antennal lobe mistarget ventromedially, phenocopying cell-autonomous Sema-1a removal from these PNs. Cell ablation, cell-specific knockdown, and rescue experiments indicate that secreted semaphorins from degenerating larval ORN axons direct dendrite targeting. Thus, a degenerating brain structure instructs the wiring of a developing circuit through the repulsive action of secreted semaphorins."}],"article_processing_charge":"No","fulldoi":"https://doi.org/10.1016/j.neuron.2011.09.026","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","status":"public","quality_controlled":"1","citation":{"ama":"Sweeney LB, Chou Y-H, Wu Z, et al. Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting. <i>Neuron</i>. 2011;72(5):734-747. doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.09.026\">10.1016/j.neuron.2011.09.026</a>","mla":"Sweeney, Lora B., et al. “Secreted Semaphorins from Degenerating Larval ORN Axons Direct Adult Projection Neuron Dendrite Targeting.” <i>Neuron</i>, vol. 72, no. 5, Elsevier, 2011, pp. 734–47, doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.09.026\">10.1016/j.neuron.2011.09.026</a>.","ista":"Sweeney LB, Chou Y-H, Wu Z, Joo W, Komiyama T, Potter CJ, Kolodkin AL, Garcia KC, Luo L. 2011. Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting. Neuron. 72(5), 734–747.","short":"L.B. Sweeney, Y.-H. Chou, Z. Wu, W. Joo, T. Komiyama, C.J. Potter, A.L. Kolodkin, K.C. Garcia, L. Luo, Neuron 72 (2011) 734–747.","chicago":"Sweeney, Lora B., Ya-Hui Chou, Zhuhao Wu, William Joo, Takaki Komiyama, Christopher J. Potter, Alex L. Kolodkin, K. Christopher Garcia, and Liqun Luo. “Secreted Semaphorins from Degenerating Larval ORN Axons Direct Adult Projection Neuron Dendrite Targeting.” <i>Neuron</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.neuron.2011.09.026\">https://doi.org/10.1016/j.neuron.2011.09.026</a>.","apa":"Sweeney, L. B., Chou, Y.-H., Wu, Z., Joo, W., Komiyama, T., Potter, C. J., … Luo, L. (2011). Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2011.09.026\">https://doi.org/10.1016/j.neuron.2011.09.026</a>","ieee":"L. B. Sweeney <i>et al.</i>, “Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting,” <i>Neuron</i>, vol. 72, no. 5. Elsevier, pp. 734–747, 2011."},"issue":"5","volume":72,"page":"734-747","publication":"Neuron","type":"journal_article","month":"12","publication_identifier":{"issn":["0896-6273"]},"language":[{"iso":"eng"}],"publisher":"Elsevier","extern":"1","doi":"10.1016/j.neuron.2011.09.026","_id":"7701","date_updated":"2024-01-31T10:13:39Z","intvolume":"        72"},{"month":"04","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0896-6273"]},"publisher":"Elsevier","doi":"10.1016/j.neuron.2011.02.050","extern":"1","_id":"7702","intvolume":"        70","date_updated":"2024-01-31T10:14:29Z","quality_controlled":"1","year":"2011","status":"public","citation":{"ieee":"Z. Wu <i>et al.</i>, “A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS,” <i>Neuron</i>, vol. 70, no. 2. Elsevier, pp. 281–298, 2011.","apa":"Wu, Z., Sweeney, L. B., Ayoob, J. C., Chak, K., Andreone, B. J., Ohyama, T., … Kolodkin, A. L. (2011). A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2011.02.050\">https://doi.org/10.1016/j.neuron.2011.02.050</a>","chicago":"Wu, Zhuhao, Lora B. Sweeney, Joseph C. Ayoob, Kayam Chak, Benjamin J. Andreone, Tomoko Ohyama, Rex Kerr, Liqun Luo, Marta Zlatic, and Alex L. Kolodkin. “A Combinatorial Semaphorin Code Instructs the Initial Steps of Sensory Circuit Assembly in the Drosophila CNS.” <i>Neuron</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.neuron.2011.02.050\">https://doi.org/10.1016/j.neuron.2011.02.050</a>.","ama":"Wu Z, Sweeney LB, Ayoob JC, et al. A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS. <i>Neuron</i>. 2011;70(2):281-298. doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.02.050\">10.1016/j.neuron.2011.02.050</a>","mla":"Wu, Zhuhao, et al. “A Combinatorial Semaphorin Code Instructs the Initial Steps of Sensory Circuit Assembly in the Drosophila CNS.” <i>Neuron</i>, vol. 70, no. 2, Elsevier, 2011, pp. 281–98, doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.02.050\">10.1016/j.neuron.2011.02.050</a>.","short":"Z. Wu, L.B. Sweeney, J.C. Ayoob, K. Chak, B.J. Andreone, T. Ohyama, R. Kerr, L. Luo, M. Zlatic, A.L. Kolodkin, Neuron 70 (2011) 281–298.","ista":"Wu Z, Sweeney LB, Ayoob JC, Chak K, Andreone BJ, Ohyama T, Kerr R, Luo L, Zlatic M, Kolodkin AL. 2011. A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS. Neuron. 70(2), 281–298."},"issue":"2","page":"281-298","volume":70,"publication":"Neuron","type":"journal_article","day":"28","publication_status":"published","oa_version":"None","title":"A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS","abstract":[{"text":"Longitudinal axon fascicles within the Drosophila embryonic CNS provide connections between body segments and are required for coordinated neural signaling along the anterior-posterior axis. We show here that establishment of select CNS longitudinal tracts and formation of precise mechanosensory afferent innervation to the same CNS region are coordinately regulated by the secreted semaphorins Sema-2a and Sema-2b. Both Sema-2a and Sema-2b utilize the same neuronal receptor, plexin B (PlexB), but serve distinct guidance functions. Localized Sema-2b attraction promotes the initial assembly of a subset of CNS longitudinal projections and subsequent targeting of chordotonal sensory afferent axons to these same longitudinal connectives, whereas broader Sema-2a repulsion serves to prevent aberrant innervation. In the absence of Sema-2b or PlexB, chordotonal afferent connectivity within the CNS is severely disrupted, resulting in specific larval behavioral deficits. These results reveal that distinct semaphorin-mediated guidance functions converge at PlexB and are critical for functional neural circuit assembly.","lang":"eng"}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","fulldoi":"https://doi.org/10.1016/j.neuron.2011.02.050","date_published":"2011-04-28T00:00:00Z","article_type":"original","date_created":"2020-04-30T10:36:30Z","author":[{"full_name":"Wu, Zhuhao","first_name":"Zhuhao","last_name":"Wu"},{"last_name":"Sweeney","orcid":"0000-0001-9242-5601","full_name":"Sweeney, Lora Beatrice Jaeger","id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","first_name":"Lora Beatrice Jaeger"},{"last_name":"Ayoob","full_name":"Ayoob, Joseph C.","first_name":"Joseph C."},{"last_name":"Chak","full_name":"Chak, Kayam","first_name":"Kayam"},{"last_name":"Andreone","first_name":"Benjamin J.","full_name":"Andreone, Benjamin J."},{"first_name":"Tomoko","full_name":"Ohyama, Tomoko","last_name":"Ohyama"},{"first_name":"Rex","full_name":"Kerr, Rex","last_name":"Kerr"},{"last_name":"Luo","first_name":"Liqun","full_name":"Luo, Liqun"},{"full_name":"Zlatic, Marta","first_name":"Marta","last_name":"Zlatic"},{"last_name":"Kolodkin","first_name":"Alex L.","full_name":"Kolodkin, Alex L."}]},{"day":"01","publication_status":"published","title":"Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework","oa_version":"None","article_processing_charge":"No","fulldoi":"https://doi.org/10.1093/beheco/arr110","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","date_published":"2011-11-01T00:00:00Z","date_created":"2020-04-30T11:01:43Z","author":[{"last_name":"Robinson","orcid":"0000-0001-8982-8813","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","full_name":"Robinson, Matthew Richard","first_name":"Matthew Richard"}],"month":"11","publisher":"Oxford University Press","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1465-7279","1045-2249"]},"_id":"7750","extern":"1","doi":"10.1093/beheco/arr110","intvolume":"        22","date_updated":"2021-01-12T08:15:16Z","quality_controlled":"1","status":"public","year":"2011","citation":{"ieee":"M. R. Robinson, “Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework,” <i>Behavioral Ecology</i>, vol. 22, no. 6. Oxford University Press, pp. 1143–1144, 2011.","apa":"Robinson, M. R. (2011). Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework. <i>Behavioral Ecology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/beheco/arr110\">https://doi.org/10.1093/beheco/arr110</a>","chicago":"Robinson, Matthew Richard. “Understanding Intrasexual Competition and Sexual Selection Requires an Evolutionary Ecology Framework.” <i>Behavioral Ecology</i>. Oxford University Press, 2011. <a href=\"https://doi.org/10.1093/beheco/arr110\">https://doi.org/10.1093/beheco/arr110</a>.","short":"M.R. Robinson, Behavioral Ecology 22 (2011) 1143–1144.","ista":"Robinson MR. 2011. Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework. Behavioral Ecology. 22(6), 1143–1144.","ama":"Robinson MR. Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework. <i>Behavioral Ecology</i>. 2011;22(6):1143-1144. doi:<a href=\"https://doi.org/10.1093/beheco/arr110\">10.1093/beheco/arr110</a>","mla":"Robinson, Matthew Richard. “Understanding Intrasexual Competition and Sexual Selection Requires an Evolutionary Ecology Framework.” <i>Behavioral Ecology</i>, vol. 22, no. 6, Oxford University Press, 2011, pp. 1143–44, doi:<a href=\"https://doi.org/10.1093/beheco/arr110\">10.1093/beheco/arr110</a>."},"issue":"6","type":"journal_article","page":"1143-1144","volume":22,"publication":"Behavioral Ecology"},{"page":"17872-17886","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071969/","open_access":"1"}],"quality_controlled":"1","status":"public","year":"2011","extern":"1","_id":"8025","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0270-6474","1529-2401"]},"month":"12","date_created":"2020-06-25T13:09:49Z","date_published":"2011-12-07T00:00:00Z","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","article_processing_charge":"No","oa_version":"Published Version","title":"State-dependent function of neocortical chandelier cells","external_id":{"pmid":["22159102"]},"publication":"Journal of Neuroscience","volume":31,"type":"journal_article","issue":"49","citation":{"ama":"Woodruff AR, McGarry LM, Vogels TP, Inan M, Anderson SA, Yuste R. State-dependent function of neocortical chandelier cells. <i>Journal of Neuroscience</i>. 2011;31(49):17872-17886. doi:<a href=\"https://doi.org/10.1523/jneurosci.3894-11.2011\">10.1523/jneurosci.3894-11.2011</a>","mla":"Woodruff, A. R., et al. “State-Dependent Function of Neocortical Chandelier Cells.” <i>Journal of Neuroscience</i>, vol. 31, no. 49, Society for Neuroscience, 2011, pp. 17872–86, doi:<a href=\"https://doi.org/10.1523/jneurosci.3894-11.2011\">10.1523/jneurosci.3894-11.2011</a>.","ista":"Woodruff AR, McGarry LM, Vogels TP, Inan M, Anderson SA, Yuste R. 2011. State-dependent function of neocortical chandelier cells. Journal of Neuroscience. 31(49), 17872–17886.","short":"A.R. Woodruff, L.M. McGarry, T.P. Vogels, M. Inan, S.A. Anderson, R. Yuste, Journal of Neuroscience 31 (2011) 17872–17886.","chicago":"Woodruff, A. R., L. M. McGarry, Tim P Vogels, M. Inan, S. A. Anderson, and R. Yuste. “State-Dependent Function of Neocortical Chandelier Cells.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2011. <a href=\"https://doi.org/10.1523/jneurosci.3894-11.2011\">https://doi.org/10.1523/jneurosci.3894-11.2011</a>.","apa":"Woodruff, A. R., McGarry, L. M., Vogels, T. P., Inan, M., Anderson, S. A., &#38; Yuste, R. (2011). State-dependent function of neocortical chandelier cells. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href=\"https://doi.org/10.1523/jneurosci.3894-11.2011\">https://doi.org/10.1523/jneurosci.3894-11.2011</a>","ieee":"A. R. Woodruff, L. M. McGarry, T. P. Vogels, M. Inan, S. A. Anderson, and R. Yuste, “State-dependent function of neocortical chandelier cells,” <i>Journal of Neuroscience</i>, vol. 31, no. 49. Society for Neuroscience, pp. 17872–17886, 2011."},"intvolume":"        31","date_updated":"2021-01-12T08:16:36Z","doi":"10.1523/jneurosci.3894-11.2011","publisher":"Society for Neuroscience","oa":1,"pmid":1,"author":[{"first_name":"A. R.","full_name":"Woodruff, A. R.","last_name":"Woodruff"},{"last_name":"McGarry","full_name":"McGarry, L. M.","first_name":"L. M."},{"orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","first_name":"Tim P","full_name":"Vogels, Tim P","last_name":"Vogels"},{"full_name":"Inan, M.","first_name":"M.","last_name":"Inan"},{"full_name":"Anderson, S. A.","first_name":"S. A.","last_name":"Anderson"},{"last_name":"Yuste","full_name":"Yuste, R.","first_name":"R."}],"article_type":"original","fulldoi":"https://doi.org/10.1523/jneurosci.3894-11.2011","abstract":[{"text":"Chandelier (axoaxonic) cells (ChCs) are a distinct group of GABAergic interneurons that innervate the axon initial segments of pyramidal cells. However, their circuit role and the function of their clearly defined anatomical specificity remain unclear. Recent work has demonstrated that chandelier cells can produce depolarizing GABAergic PSPs, occasionally driving postsynaptic targets to spike. On the other hand, other work suggests that ChCs are hyperpolarizing and may have an inhibitory role. These disparate functional effects may reflect heterogeneity among ChCs. Here, using brain slices from transgenic mouse strains, we first demonstrate that, across different neocortical areas and genetic backgrounds, upper Layer 2/3 ChCs belong to a single electrophysiologically and morphologically defined population, extensively sampling Layer 1 inputs with asymmetric dendrites. Consistent with being a single cell type, we find electrical coupling between ChCs. We then investigate the effect of chandelier cell activation on pyramidal neuron spiking in several conditions, ranging from the resting membrane potential to stimuli designed to approximate in vivo membrane potential dynamics. We find that under quiescent conditions, chandelier cells are capable of both promoting and inhibiting spike generation, depending on the postsynaptic membrane potential. However, during in vivo-like membrane potential fluctuations, the dominant postsynaptic effect was a strong inhibition. Thus, neocortical chandelier cells, even from within a homogeneous population, appear to play a dual role in the circuit, helping to activate quiescent pyramidal neurons, while at the same time inhibiting active ones.","lang":"eng"}],"publication_status":"published","day":"7"},{"article_processing_charge":"No","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","external_id":{"pmid":["22075724"]},"title":"Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1126/science.336.6083.802-c"}]},"oa_version":"None","date_published":"2011-12-16T00:00:00Z","date_created":"2020-06-30T13:26:17Z","_id":"8074","extern":"1","month":"12","publication_identifier":{"issn":["0036-8075","1095-9203"]},"language":[{"iso":"eng"}],"page":"1569-1573","quality_controlled":"1","year":"2011","status":"public","abstract":[{"text":"Cortical neurons receive balanced excitatory and inhibitory synaptic currents. Such a balance could be established and maintained in an experience-dependent manner by synaptic plasticity at inhibitory synapses. We show that this mechanism provides an explanation for the sparse firing patterns observed in response to natural stimuli and fits well with a recently observed interaction of excitatory and inhibitory receptive field plasticity. The introduction of inhibitory plasticity in suitable recurrent networks provides a homeostatic mechanism that leads to asynchronous irregular network states. Further, it can accommodate synaptic memories with activity patterns that become indiscernible from the background state but can be reactivated by external stimuli. Our results suggest an essential role of inhibitory plasticity in the formation and maintenance of functional cortical circuitry.","lang":"eng"}],"fulldoi":"https://doi.org/10.1126/science.1211095","publication_status":"published","day":"16","author":[{"last_name":"Vogels","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","full_name":"Vogels, Tim P","first_name":"Tim P","orcid":"0000-0003-3295-6181"},{"last_name":"Sprekeler","first_name":"H.","full_name":"Sprekeler, H."},{"last_name":"Zenke","full_name":"Zenke, F.","first_name":"F."},{"first_name":"C.","full_name":"Clopath, C.","last_name":"Clopath"},{"full_name":"Gerstner, W.","first_name":"W.","last_name":"Gerstner"}],"article_type":"original","doi":"10.1126/science.1211095","intvolume":"       334","date_updated":"2021-06-02T14:57:22Z","pmid":1,"scopus_import":"1","publisher":"American Association for the Advancement of Science","issue":"6062","type":"journal_article","volume":334,"publication":"Science","citation":{"apa":"Vogels, T. P., Sprekeler, H., Zenke, F., Clopath, C., &#38; Gerstner, W. (2011). Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1211095\">https://doi.org/10.1126/science.1211095</a>","ieee":"T. P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner, “Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks,” <i>Science</i>, vol. 334, no. 6062. American Association for the Advancement of Science, pp. 1569–1573, 2011.","mla":"Vogels, Tim P., et al. “Inhibitory Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks.” <i>Science</i>, vol. 334, no. 6062, American Association for the Advancement of Science, 2011, pp. 1569–73, doi:<a href=\"https://doi.org/10.1126/science.1211095\">10.1126/science.1211095</a>.","ama":"Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks. <i>Science</i>. 2011;334(6062):1569-1573. doi:<a href=\"https://doi.org/10.1126/science.1211095\">10.1126/science.1211095</a>","short":"T.P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, W. Gerstner, Science 334 (2011) 1569–1573.","ista":"Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. 2011. Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks. Science. 334(6062), 1569–1573.","chicago":"Vogels, Tim P, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner. “Inhibitory Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks.” <i>Science</i>. American Association for the Advancement of Science, 2011. <a href=\"https://doi.org/10.1126/science.1211095\">https://doi.org/10.1126/science.1211095</a>."}},{"article_type":"original","author":[{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","full_name":"Schanda, Paul","first_name":"Paul","orcid":"0000-0002-9350-7606","last_name":"Schanda"},{"full_name":"Huber, Matthias","first_name":"Matthias","last_name":"Huber"},{"first_name":"Jérôme","full_name":"Boisbouvier, Jérôme","last_name":"Boisbouvier"},{"full_name":"Meier, Beat H.","first_name":"Beat H.","last_name":"Meier"},{"first_name":"Matthias","full_name":"Ernst, Matthias","last_name":"Ernst"}],"day":"14","publication_status":"published","abstract":[{"text":"Nonsymmetric motion: Solid‐state NMR measurements of dipolar coupling tensors provide insight into protein dynamics. The hitherto ignored asymmetry of the dipolar coupling tensor contains valuable information about motional asymmetry, which was used in the first direct site‐resolved measurement of such tensors. Important motions such as rotamer jumps can now be directly detected in the solid state.","lang":"eng"}],"fulldoi":"https://doi.org/10.1002/anie.201103944","citation":{"chicago":"Schanda, Paul, Matthias Huber, Jérôme Boisbouvier, Beat H. Meier, and Matthias Ernst. “Solid-State NMR Measurements of Asymmetric Dipolar Couplings Provide Insight into Protein Side-Chain Motion.” <i>Angewandte Chemie International Edition</i>. Wiley, 2011. <a href=\"https://doi.org/10.1002/anie.201103944\">https://doi.org/10.1002/anie.201103944</a>.","ama":"Schanda P, Huber M, Boisbouvier J, Meier BH, Ernst M. Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion. <i>Angewandte Chemie International Edition</i>. 2011;50(46):11005-11009. doi:<a href=\"https://doi.org/10.1002/anie.201103944\">10.1002/anie.201103944</a>","mla":"Schanda, Paul, et al. “Solid-State NMR Measurements of Asymmetric Dipolar Couplings Provide Insight into Protein Side-Chain Motion.” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 46, Wiley, 2011, pp. 11005–09, doi:<a href=\"https://doi.org/10.1002/anie.201103944\">10.1002/anie.201103944</a>.","short":"P. Schanda, M. Huber, J. Boisbouvier, B.H. Meier, M. Ernst, Angewandte Chemie International Edition 50 (2011) 11005–11009.","ista":"Schanda P, Huber M, Boisbouvier J, Meier BH, Ernst M. 2011. Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion. Angewandte Chemie International Edition. 50(46), 11005–11009.","ieee":"P. Schanda, M. Huber, J. Boisbouvier, B. H. Meier, and M. Ernst, “Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion,” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 46. Wiley, pp. 11005–11009, 2011.","apa":"Schanda, P., Huber, M., Boisbouvier, J., Meier, B. H., &#38; Ernst, M. (2011). Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.201103944\">https://doi.org/10.1002/anie.201103944</a>"},"issue":"46","publication":"Angewandte Chemie International Edition","volume":50,"type":"journal_article","publisher":"Wiley","doi":"10.1002/anie.201103944","intvolume":"        50","date_updated":"2021-01-12T08:19:27Z","date_published":"2011-09-14T00:00:00Z","date_created":"2020-09-18T10:09:40Z","related_material":{"link":[{"url":"https://doi.org/10.1002/anie.201206663","relation":"erratum"}]},"oa_version":"None","title":"Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","year":"2011","quality_controlled":"1","page":"11005-11009","month":"09","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1433-7851"]},"extern":"1","_id":"8464"},{"date_published":"2011-10-25T00:00:00Z","article_type":"original","date_created":"2020-09-18T10:10:43Z","author":[{"full_name":"Lalli, Daniela","first_name":"Daniela","last_name":"Lalli"},{"last_name":"Schanda","orcid":"0000-0002-9350-7606","first_name":"Paul","full_name":"Schanda, Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425"},{"last_name":"Chowdhury","first_name":"Anup","full_name":"Chowdhury, Anup"},{"last_name":"Retel","first_name":"Joren","full_name":"Retel, Joren"},{"last_name":"Hiller","full_name":"Hiller, Matthias","first_name":"Matthias"},{"last_name":"Higman","first_name":"Victoria A.","full_name":"Higman, Victoria A."},{"first_name":"Lieselotte","full_name":"Handel, Lieselotte","last_name":"Handel"},{"full_name":"Agarwal, Vipin","first_name":"Vipin","last_name":"Agarwal"},{"first_name":"Bernd","full_name":"Reif, Bernd","last_name":"Reif"},{"first_name":"Barth","full_name":"van Rossum, Barth","last_name":"van Rossum"},{"first_name":"Ümit","full_name":"Akbey, Ümit","last_name":"Akbey"},{"last_name":"Oschkinat","first_name":"Hartmut","full_name":"Oschkinat, Hartmut"}],"day":"25","publication_status":"published","oa_version":"None","title":"Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins","article_processing_charge":"No","fulldoi":"https://doi.org/10.1007/s10858-011-9578-1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","status":"public","year":"2011","citation":{"apa":"Lalli, D., Schanda, P., Chowdhury, A., Retel, J., Hiller, M., Higman, V. A., … Oschkinat, H. (2011). Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins. <i>Journal of Biomolecular NMR</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10858-011-9578-1\">https://doi.org/10.1007/s10858-011-9578-1</a>","ieee":"D. Lalli <i>et al.</i>, “Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins,” <i>Journal of Biomolecular NMR</i>, vol. 51, no. 4. Springer Nature, pp. 477–485, 2011.","mla":"Lalli, Daniela, et al. “Three-Dimensional Deuterium-Carbon Correlation Experiments for High-Resolution Solid-State MAS NMR Spectroscopy of Large Proteins.” <i>Journal of Biomolecular NMR</i>, vol. 51, no. 4, Springer Nature, 2011, pp. 477–85, doi:<a href=\"https://doi.org/10.1007/s10858-011-9578-1\">10.1007/s10858-011-9578-1</a>.","ama":"Lalli D, Schanda P, Chowdhury A, et al. Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins. <i>Journal of Biomolecular NMR</i>. 2011;51(4):477-485. doi:<a href=\"https://doi.org/10.1007/s10858-011-9578-1\">10.1007/s10858-011-9578-1</a>","ista":"Lalli D, Schanda P, Chowdhury A, Retel J, Hiller M, Higman VA, Handel L, Agarwal V, Reif B, van Rossum B, Akbey Ü, Oschkinat H. 2011. Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins. Journal of Biomolecular NMR. 51(4), 477–485.","short":"D. Lalli, P. Schanda, A. Chowdhury, J. Retel, M. Hiller, V.A. Higman, L. Handel, V. Agarwal, B. Reif, B. van Rossum, Ü. Akbey, H. Oschkinat, Journal of Biomolecular NMR 51 (2011) 477–485.","chicago":"Lalli, Daniela, Paul Schanda, Anup Chowdhury, Joren Retel, Matthias Hiller, Victoria A. Higman, Lieselotte Handel, et al. “Three-Dimensional Deuterium-Carbon Correlation Experiments for High-Resolution Solid-State MAS NMR Spectroscopy of Large Proteins.” <i>Journal of Biomolecular NMR</i>. Springer Nature, 2011. <a href=\"https://doi.org/10.1007/s10858-011-9578-1\">https://doi.org/10.1007/s10858-011-9578-1</a>."},"issue":"4","publication":"Journal of Biomolecular NMR","page":"477-485","volume":51,"type":"journal_article","month":"10","publication_identifier":{"issn":["0925-2738","1573-5001"]},"language":[{"iso":"eng"}],"publisher":"Springer Nature","doi":"10.1007/s10858-011-9578-1","extern":"1","_id":"8468","intvolume":"        51","date_updated":"2021-01-12T08:19:29Z"},{"article_type":"original","author":[{"orcid":"0000-0002-9350-7606","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","first_name":"Paul","full_name":"Schanda, Paul","last_name":"Schanda"},{"last_name":"Meier","full_name":"Meier, Beat H.","first_name":"Beat H."},{"first_name":"Matthias","full_name":"Ernst, Matthias","last_name":"Ernst"}],"publication_status":"published","day":"01","keyword":["Nuclear and High Energy Physics","Biophysics","Biochemistry","Condensed Matter Physics"],"fulldoi":"https://doi.org/10.1016/j.jmr.2011.03.015","abstract":[{"text":"The accurate experimental determination of dipolar-coupling constants for one-bond heteronuclear dipolar couplings in solids is a key for the quantification of the amplitudes of motional processes. Averaging of the dipolar coupling reports on motions on time scales up to the inverse of the coupling constant, in our case tens of microseconds. Combining dipolar-coupling derived order parameters that characterize the amplitudes of the motion with relaxation data leads to a more precise characterization of the dynamical parameters and helps to disentangle the amplitudes and the time scales of the motional processes, which impact relaxation rates in a highly correlated way. Here. we describe and characterize an improved experimental protocol – based on REDOR – to measure these couplings in perdeuterated proteins with a reduced sensitivity to experimental missettings. Because such effects are presently the dominant source of systematic errors in experimental dipolar-coupling measurements, these compensated experiments should help to significantly improve the precision of such data. A detailed comparison with other commonly used pulse sequences (T-MREV, phase-inverted CP,R18 5/2, and R18 7/1) is provided.","lang":"eng"}],"citation":{"chicago":"Schanda, Paul, Beat H. Meier, and Matthias Ernst. “Accurate Measurement of One-Bond H–X Heteronuclear Dipolar Couplings in MAS Solid-State NMR.” <i>Journal of Magnetic Resonance</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.jmr.2011.03.015\">https://doi.org/10.1016/j.jmr.2011.03.015</a>.","ista":"Schanda P, Meier BH, Ernst M. 2011. Accurate measurement of one-bond H–X heteronuclear dipolar couplings in MAS solid-state NMR. Journal of Magnetic Resonance. 210(2), 246–259.","short":"P. Schanda, B.H. Meier, M. Ernst, Journal of Magnetic Resonance 210 (2011) 246–259.","ama":"Schanda P, Meier BH, Ernst M. Accurate measurement of one-bond H–X heteronuclear dipolar couplings in MAS solid-state NMR. <i>Journal of Magnetic Resonance</i>. 2011;210(2):246-259. doi:<a href=\"https://doi.org/10.1016/j.jmr.2011.03.015\">10.1016/j.jmr.2011.03.015</a>","mla":"Schanda, Paul, et al. “Accurate Measurement of One-Bond H–X Heteronuclear Dipolar Couplings in MAS Solid-State NMR.” <i>Journal of Magnetic Resonance</i>, vol. 210, no. 2, Elsevier, 2011, pp. 246–59, doi:<a href=\"https://doi.org/10.1016/j.jmr.2011.03.015\">10.1016/j.jmr.2011.03.015</a>.","ieee":"P. Schanda, B. H. Meier, and M. Ernst, “Accurate measurement of one-bond H–X heteronuclear dipolar couplings in MAS solid-state NMR,” <i>Journal of Magnetic Resonance</i>, vol. 210, no. 2. Elsevier, pp. 246–259, 2011.","apa":"Schanda, P., Meier, B. H., &#38; Ernst, M. (2011). Accurate measurement of one-bond H–X heteronuclear dipolar couplings in MAS solid-state NMR. <i>Journal of Magnetic Resonance</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jmr.2011.03.015\">https://doi.org/10.1016/j.jmr.2011.03.015</a>"},"type":"journal_article","volume":210,"publication":"Journal of Magnetic Resonance","issue":"2","publisher":"Elsevier","date_updated":"2021-01-12T08:19:29Z","intvolume":"       210","doi":"10.1016/j.jmr.2011.03.015","date_created":"2020-09-18T10:10:50Z","date_published":"2011-06-01T00:00:00Z","title":"Accurate measurement of one-bond H–X heteronuclear dipolar couplings in MAS solid-state NMR","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","quality_controlled":"1","status":"public","year":"2011","page":"246-259","publication_identifier":{"issn":["1090-7807"]},"language":[{"iso":"eng"}],"month":"06","_id":"8469","extern":"1"},{"doi":"10.1002/cphc.201100062","intvolume":"        12","date_updated":"2021-01-12T08:19:30Z","publisher":"Wiley","issue":"5","type":"journal_article","volume":12,"publication":"ChemPhysChem","citation":{"chicago":"Huber, Matthias, Sebastian Hiller, Paul Schanda, Matthias Ernst, Anja Böckmann, René Verel, and Beat H. Meier. “A Proton-Detected 4D Solid-State NMR Experiment for Protein Structure Determination.” <i>ChemPhysChem</i>. Wiley, 2011. <a href=\"https://doi.org/10.1002/cphc.201100062\">https://doi.org/10.1002/cphc.201100062</a>.","mla":"Huber, Matthias, et al. “A Proton-Detected 4D Solid-State NMR Experiment for Protein Structure Determination.” <i>ChemPhysChem</i>, vol. 12, no. 5, Wiley, 2011, pp. 915–18, doi:<a href=\"https://doi.org/10.1002/cphc.201100062\">10.1002/cphc.201100062</a>.","ama":"Huber M, Hiller S, Schanda P, et al. A proton-detected 4D solid-state NMR experiment for protein structure determination. <i>ChemPhysChem</i>. 2011;12(5):915-918. doi:<a href=\"https://doi.org/10.1002/cphc.201100062\">10.1002/cphc.201100062</a>","short":"M. Huber, S. Hiller, P. Schanda, M. Ernst, A. Böckmann, R. Verel, B.H. Meier, ChemPhysChem 12 (2011) 915–918.","ista":"Huber M, Hiller S, Schanda P, Ernst M, Böckmann A, Verel R, Meier BH. 2011. A proton-detected 4D solid-state NMR experiment for protein structure determination. ChemPhysChem. 12(5), 915–918.","ieee":"M. Huber <i>et al.</i>, “A proton-detected 4D solid-state NMR experiment for protein structure determination,” <i>ChemPhysChem</i>, vol. 12, no. 5. Wiley, pp. 915–918, 2011.","apa":"Huber, M., Hiller, S., Schanda, P., Ernst, M., Böckmann, A., Verel, R., &#38; Meier, B. H. (2011). A proton-detected 4D solid-state NMR experiment for protein structure determination. <i>ChemPhysChem</i>. Wiley. <a href=\"https://doi.org/10.1002/cphc.201100062\">https://doi.org/10.1002/cphc.201100062</a>"},"abstract":[{"text":"Adding a new dimension: 4D or 3D proton‐detected spectra of perdeuterated protein samples with 1H labelled amides and methyl groups permit collecting unambiguous distance restraints with high sensitivity and determining protein structure by solid‐state NMR (see picture).","lang":"eng"}],"fulldoi":"https://doi.org/10.1002/cphc.201100062","day":"15","publication_status":"published","keyword":["Physical and Theoretical Chemistry","Atomic and Molecular Physics","and Optics"],"author":[{"last_name":"Huber","full_name":"Huber, Matthias","first_name":"Matthias"},{"last_name":"Hiller","full_name":"Hiller, Sebastian","first_name":"Sebastian"},{"orcid":"0000-0002-9350-7606","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","full_name":"Schanda, Paul","first_name":"Paul","last_name":"Schanda"},{"last_name":"Ernst","first_name":"Matthias","full_name":"Ernst, Matthias"},{"last_name":"Böckmann","first_name":"Anja","full_name":"Böckmann, Anja"},{"full_name":"Verel, René","first_name":"René","last_name":"Verel"},{"full_name":"Meier, Beat H.","first_name":"Beat H.","last_name":"Meier"}],"article_type":"original","_id":"8470","extern":"1","month":"02","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1439-4235"]},"page":"915-918","status":"public","year":"2011","quality_controlled":"1","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"A proton-detected 4D solid-state NMR experiment for protein structure determination","oa_version":"None","date_published":"2011-02-15T00:00:00Z","date_created":"2020-09-18T10:10:56Z"},{"publication_status":"published","day":"21","title":"Probing water accessibility in HET-s(218–289) amyloid fibrils by solid-state NMR","oa_version":"None","article_processing_charge":"No","abstract":[{"lang":"eng","text":"Despite the importance of protein fibrils in the context of conformational diseases, information on their structure is still sparse. Hydrogen/deuterium exchange measurements of backbone amide protons allow the identification hydrogen-bonding patterns and reveal pertinent information on the amyloid β-sheet architecture. However, they provide only little information on the identity of residues exposed to solvent or buried inside the fibril core. NMR spectroscopy is a potent method for identifying solvent-accessible residues in proteins via observation of polarization transfer between chemically exchanging side-chain protons and water protons. We show here that the combined use of highly deuterated samples and fast magic-angle spinning greatly attenuates unwanted spin diffusion and allows identification of polarization exchange with the solvent in a site-specific manner. We apply this measurement protocol to HET-s(218–289) prion fibrils under different conditions (including physiological pH, where protofibrils assemble together into thicker fibrils) and demonstrate that each protofibril of HET-s(218–289), is surrounded by water, thus excluding the existence of extended dry interfibril contacts. We also show that exchangeable side-chain protons inside the hydrophobic core of HET-s(218–289) do not exchange over time intervals of weeks to months. The experiments proposed in this study can provide insight into the detailed structural features of amyloid fibrils in general."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","fulldoi":"https://doi.org/10.1016/j.jmb.2010.11.004","article_type":"original","date_published":"2011-01-21T00:00:00Z","date_created":"2020-09-18T10:11:03Z","author":[{"full_name":"Van Melckebeke, Hélène","first_name":"Hélène","last_name":"Van Melckebeke"},{"last_name":"Schanda","full_name":"Schanda, Paul","first_name":"Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","orcid":"0000-0002-9350-7606"},{"first_name":"Julia","full_name":"Gath, Julia","last_name":"Gath"},{"last_name":"Wasmer","full_name":"Wasmer, Christian","first_name":"Christian"},{"last_name":"Verel","first_name":"René","full_name":"Verel, René"},{"last_name":"Lange","full_name":"Lange, Adam","first_name":"Adam"},{"full_name":"Meier, Beat H.","first_name":"Beat H.","last_name":"Meier"},{"last_name":"Böckmann","first_name":"Anja","full_name":"Böckmann, Anja"}],"month":"01","publisher":"Elsevier","publication_identifier":{"issn":["0022-2836"]},"language":[{"iso":"eng"}],"_id":"8471","extern":"1","doi":"10.1016/j.jmb.2010.11.004","date_updated":"2021-01-12T08:19:30Z","intvolume":"       405","quality_controlled":"1","status":"public","year":"2011","citation":{"chicago":"Van Melckebeke, Hélène, Paul Schanda, Julia Gath, Christian Wasmer, René Verel, Adam Lange, Beat H. Meier, and Anja Böckmann. “Probing Water Accessibility in HET-s(218–289) Amyloid Fibrils by Solid-State NMR.” <i>Journal of Molecular Biology</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.jmb.2010.11.004\">https://doi.org/10.1016/j.jmb.2010.11.004</a>.","ama":"Van Melckebeke H, Schanda P, Gath J, et al. Probing water accessibility in HET-s(218–289) amyloid fibrils by solid-state NMR. <i>Journal of Molecular Biology</i>. 2011;405(3):765-772. doi:<a href=\"https://doi.org/10.1016/j.jmb.2010.11.004\">10.1016/j.jmb.2010.11.004</a>","mla":"Van Melckebeke, Hélène, et al. “Probing Water Accessibility in HET-s(218–289) Amyloid Fibrils by Solid-State NMR.” <i>Journal of Molecular Biology</i>, vol. 405, no. 3, Elsevier, 2011, pp. 765–72, doi:<a href=\"https://doi.org/10.1016/j.jmb.2010.11.004\">10.1016/j.jmb.2010.11.004</a>.","short":"H. Van Melckebeke, P. Schanda, J. Gath, C. Wasmer, R. Verel, A. Lange, B.H. Meier, A. Böckmann, Journal of Molecular Biology 405 (2011) 765–772.","ista":"Van Melckebeke H, Schanda P, Gath J, Wasmer C, Verel R, Lange A, Meier BH, Böckmann A. 2011. Probing water accessibility in HET-s(218–289) amyloid fibrils by solid-state NMR. Journal of Molecular Biology. 405(3), 765–772.","ieee":"H. Van Melckebeke <i>et al.</i>, “Probing water accessibility in HET-s(218–289) amyloid fibrils by solid-state NMR,” <i>Journal of Molecular Biology</i>, vol. 405, no. 3. Elsevier, pp. 765–772, 2011.","apa":"Van Melckebeke, H., Schanda, P., Gath, J., Wasmer, C., Verel, R., Lange, A., … Böckmann, A. (2011). Probing water accessibility in HET-s(218–289) amyloid fibrils by solid-state NMR. <i>Journal of Molecular Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jmb.2010.11.004\">https://doi.org/10.1016/j.jmb.2010.11.004</a>"},"issue":"3","type":"journal_article","volume":405,"page":"765-772","publication":"Journal of Molecular Biology"},{"date_published":"2011-08-04T00:00:00Z","date_created":"2020-09-18T10:47:41Z","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Destruction of invariant curves in the restricted circular planar three-body problem by using comparison of action","oa_version":"None","page":"275-327","quality_controlled":"1","status":"public","year":"2011","_id":"8505","extern":"1","month":"08","publication_identifier":{"issn":["0012-7094"]},"language":[{"iso":"eng"}],"author":[{"last_name":"Galante","first_name":"Joseph","full_name":"Galante, Joseph"},{"last_name":"Kaloshin","id":"FE553552-CDE8-11E9-B324-C0EBE5697425","first_name":"Vadim","full_name":"Kaloshin, Vadim","orcid":"0000-0002-6051-2628"}],"article_type":"original","abstract":[{"text":"The classical principle of least action says that orbits of mechanical systems extremize action; an important subclass are those orbits that minimize action. In this paper we utilize this principle along with Aubry-Mather theory to construct (Birkhoff) regions of instability for a certain three-body problem, given by a Hamiltonian system of 2 degrees of freedom. We believe that these methods can be applied to construct instability regions for a variety of Hamiltonian systems with 2 degrees of freedom. The Hamiltonian model we consider describes dynamics of a Sun-Jupiter-comet system, and under some simplifying assumptions, we show the existence of instabilities for the orbit of the comet. In particular, we show that a comet which starts close to an orbit in the shape of an ellipse of eccentricity e=0.66 can increase in eccentricity up to e=0.96. In the sequels to this paper, we extend the result to beyond e=1 and show the existence of ejection orbits. Such orbits are initially well within the range of our solar system. This might give an indication of why most objects rotating around the Sun in our solar system have relatively low eccentricity.","lang":"eng"}],"fulldoi":"https://doi.org/10.1215/00127094-1415878","publication_status":"published","keyword":["General Mathematics"],"day":"04","issue":"2","type":"journal_article","volume":159,"publication":"Duke Mathematical Journal","citation":{"apa":"Galante, J., &#38; Kaloshin, V. (2011). Destruction of invariant curves in the restricted circular planar three-body problem by using comparison of action. <i>Duke Mathematical Journal</i>. Duke University Press. <a href=\"https://doi.org/10.1215/00127094-1415878\">https://doi.org/10.1215/00127094-1415878</a>","ieee":"J. Galante and V. Kaloshin, “Destruction of invariant curves in the restricted circular planar three-body problem by using comparison of action,” <i>Duke Mathematical Journal</i>, vol. 159, no. 2. Duke University Press, pp. 275–327, 2011.","ama":"Galante J, Kaloshin V. Destruction of invariant curves in the restricted circular planar three-body problem by using comparison of action. <i>Duke Mathematical Journal</i>. 2011;159(2):275-327. doi:<a href=\"https://doi.org/10.1215/00127094-1415878\">10.1215/00127094-1415878</a>","mla":"Galante, Joseph, and Vadim Kaloshin. “Destruction of Invariant Curves in the Restricted Circular Planar Three-Body Problem by Using Comparison of Action.” <i>Duke Mathematical Journal</i>, vol. 159, no. 2, Duke University Press, 2011, pp. 275–327, doi:<a href=\"https://doi.org/10.1215/00127094-1415878\">10.1215/00127094-1415878</a>.","ista":"Galante J, Kaloshin V. 2011. Destruction of invariant curves in the restricted circular planar three-body problem by using comparison of action. Duke Mathematical Journal. 159(2), 275–327.","short":"J. Galante, V. Kaloshin, Duke Mathematical Journal 159 (2011) 275–327.","chicago":"Galante, Joseph, and Vadim Kaloshin. “Destruction of Invariant Curves in the Restricted Circular Planar Three-Body Problem by Using Comparison of Action.” <i>Duke Mathematical Journal</i>. Duke University Press, 2011. <a href=\"https://doi.org/10.1215/00127094-1415878\">https://doi.org/10.1215/00127094-1415878</a>."},"doi":"10.1215/00127094-1415878","intvolume":"       159","date_updated":"2021-01-12T08:19:45Z","publisher":"Duke University Press"},{"citation":{"mla":"Kondrashov, Fyodor. “Gene Dosage and Duplication.” <i>Evolution after Gene Duplication</i>, Wiley-Blackwell, 2011, pp. 57–76, doi:<a href=\"https://doi.org/10.1002/9780470619902.ch4\">10.1002/9780470619902.ch4</a>.","ama":"Kondrashov F. Gene Dosage and Duplication. In: <i>Evolution after Gene Duplication</i>. Wiley-Blackwell; 2011:57-76. doi:<a href=\"https://doi.org/10.1002/9780470619902.ch4\">10.1002/9780470619902.ch4</a>","short":"F. Kondrashov, in:, Evolution after Gene Duplication, Wiley-Blackwell, 2011, pp. 57–76.","ista":"Kondrashov F. 2011.Gene Dosage and Duplication. In: Evolution after Gene Duplication. , 57–76.","chicago":"Kondrashov, Fyodor. “Gene Dosage and Duplication.” In <i>Evolution after Gene Duplication</i>, 57–76. Wiley-Blackwell, 2011. <a href=\"https://doi.org/10.1002/9780470619902.ch4\">https://doi.org/10.1002/9780470619902.ch4</a>.","apa":"Kondrashov, F. (2011). Gene Dosage and Duplication. In <i>Evolution after Gene Duplication</i> (pp. 57–76). Wiley-Blackwell. <a href=\"https://doi.org/10.1002/9780470619902.ch4\">https://doi.org/10.1002/9780470619902.ch4</a>","ieee":"F. Kondrashov, “Gene Dosage and Duplication,” in <i>Evolution after Gene Duplication</i>, Wiley-Blackwell, 2011, pp. 57–76."},"status":"public","quality_controlled":0,"year":"2011","type":"book_chapter","page":"57 - 76","publication":"Evolution after Gene Duplication","publisher":"Wiley-Blackwell","month":"03","date_updated":"2021-01-12T08:21:08Z","_id":"881","doi":"10.1002/9780470619902.ch4","extern":1,"date_created":"2018-12-11T11:49:00Z","date_published":"2011-03-14T00:00:00Z","publist_id":"6766","author":[{"first_name":"Fyodor","full_name":"Fyodor Kondrashov","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","last_name":"Kondrashov"}],"title":"Gene Dosage and Duplication","day":"14","publication_status":"published","fulldoi":"https://doi.org/10.1002/9780470619902.ch4"},{"fulldoi":"https://doi.org/10.1371/journal.pone.0017716","abstract":[{"lang":"eng","text":"Recent discovery of the Large-billed Reed Warbler (Acrocephalus orinus) in museums and in the wild significantly expanded our knowledge of its morphological traits and genetic variability, and revealed new data on geographical distribution of the breeding grounds, migration routes and wintering locations of this species. It is now certain that A. orinus is breeding in Central Asia; however, the precise area of distribution remains unclear. The difficulty in the further study of this species lies in the small number of known specimens, with only 13 currently available in museums, and in the relative uncertainty of the breeding area and habitat of this species. Following morphological and genetic analyses from Svensson, et al, we describe 14 new A. orinus specimens from collections of Zoological Museums of the former USSR from the territory of Central Asian states. All of these specimens were erroneously labeled as Blyth's Reed Warbler (A. dumetorum), which is thought to be a breeding species in these areas. The 14 new A. orinus specimens were collected during breeding season while most of the 85 A. dumetorum specimens from the same area were collected during the migration period. Our data indicate that the Central Asian territory previously attributed as breeding grounds of A. dumetorum is likely to constitute the breeding territory of A. orinus. This rare case of a re-description of the breeding territory of a lost species emphasizes the importance of maintenance of museum collections around the world. If the present data on the breeding grounds of A. orinus are confirmed with field observations and collections, the literature on the biology of A. dumetorum from the southern part of its range may have to be reconsidered."}],"title":"Acrocephalus orinus: A case of Mistaken identity","acknowledgement":"The work was supported by the Plan Nacional grant number BFU2009-09271 from the Spanish Ministry of Science and Innovation.\nWe extend our thanks to A.M. Peklo and I.V. Fadeev for granting us access to ornithological collections, to V.S. Shishkin, M.V. Kalyakin, R.D. Kashkarov, O.V. Belyalov and V.M. Loskot for valuable insights and to L. Svensson for extensive feedback on the manuscript. We thank E.I. Rogaev for access to ancient DNA facility.\n","day":"01","publication_status":"published","publist_id":"6760","author":[{"last_name":"Koblik","first_name":"Evgeniy","full_name":"Koblik, Evgeniy A"},{"last_name":"Red'Kin","full_name":"Red'Kin, Yaroslav A","first_name":"Yaroslav"},{"last_name":"Meer","first_name":"Margarita","full_name":"Meer, Margarita S"},{"first_name":"Romain","full_name":"Derelle, Romain","last_name":"Derelle"},{"full_name":"Golenkina, Sofia A","first_name":"Sofia","last_name":"Golenkina"},{"last_name":"Kondrashov","full_name":"Fyodor Kondrashov","first_name":"Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694"},{"last_name":"Arkhipov","first_name":"Vladimir","full_name":"Arkhipov, Vladimir Y"}],"date_created":"2018-12-11T11:49:02Z","date_published":"2011-01-01T00:00:00Z","date_updated":"2021-01-12T08:21:18Z","intvolume":"         6","_id":"890","extern":1,"doi":"10.1371/journal.pone.0017716","publisher":"Public Library of Science","month":"01","type":"journal_article","volume":6,"publication":"PLoS One","issue":"4","citation":{"short":"E. Koblik, Y. Red’Kin, M. Meer, R. Derelle, S. Golenkina, F. Kondrashov, V. Arkhipov, PLoS One 6 (2011).","ista":"Koblik E, Red’Kin Y, Meer M, Derelle R, Golenkina S, Kondrashov F, Arkhipov V. 2011. Acrocephalus orinus: A case of Mistaken identity. PLoS One. 6(4).","ama":"Koblik E, Red’Kin Y, Meer M, et al. Acrocephalus orinus: A case of Mistaken identity. <i>PLoS One</i>. 2011;6(4). doi:<a href=\"https://doi.org/10.1371/journal.pone.0017716\">10.1371/journal.pone.0017716</a>","mla":"Koblik, Evgeniy, et al. “Acrocephalus Orinus: A Case of Mistaken Identity.” <i>PLoS One</i>, vol. 6, no. 4, Public Library of Science, 2011, doi:<a href=\"https://doi.org/10.1371/journal.pone.0017716\">10.1371/journal.pone.0017716</a>.","chicago":"Koblik, Evgeniy, Yaroslav Red’Kin, Margarita Meer, Romain Derelle, Sofia Golenkina, Fyodor Kondrashov, and Vladimir Arkhipov. “Acrocephalus Orinus: A Case of Mistaken Identity.” <i>PLoS One</i>. Public Library of Science, 2011. <a href=\"https://doi.org/10.1371/journal.pone.0017716\">https://doi.org/10.1371/journal.pone.0017716</a>.","apa":"Koblik, E., Red’Kin, Y., Meer, M., Derelle, R., Golenkina, S., Kondrashov, F., &#38; Arkhipov, V. (2011). Acrocephalus orinus: A case of Mistaken identity. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0017716\">https://doi.org/10.1371/journal.pone.0017716</a>","ieee":"E. Koblik <i>et al.</i>, “Acrocephalus orinus: A case of Mistaken identity,” <i>PLoS One</i>, vol. 6, no. 4. Public Library of Science, 2011."},"status":"public","year":"2011","quality_controlled":0},{"publisher":"Acoustical Society of America","language":[{"iso":"eng"}],"pmid":1,"month":"11","date_updated":"2021-01-12T08:21:44Z","intvolume":"       130","_id":"90","extern":"1","doi":"10.1121/1.3643816","citation":{"chicago":"Higginbotham, Andrew P, A Guillen, Nick Jones, Tom Donnelly, and Andrew Bernoff. “Evidence of the Harmonic Faraday Instability in Ultrasonic Atomization Experiments with a Deep, Inviscid Fluid.” <i>Journal of the Acoustical Society of America</i>. Acoustical Society of America, 2011. <a href=\"https://doi.org/10.1121/1.3643816\">https://doi.org/10.1121/1.3643816</a>.","ista":"Higginbotham AP, Guillen A, Jones N, Donnelly T, Bernoff A. 2011. Evidence of the harmonic Faraday instability in ultrasonic atomization experiments with a deep, inviscid fluid. Journal of the Acoustical Society of America. 130(5), 2694–2699.","short":"A.P. Higginbotham, A. Guillen, N. Jones, T. Donnelly, A. Bernoff, Journal of the Acoustical Society of America 130 (2011) 2694–2699.","mla":"Higginbotham, Andrew P., et al. “Evidence of the Harmonic Faraday Instability in Ultrasonic Atomization Experiments with a Deep, Inviscid Fluid.” <i>Journal of the Acoustical Society of America</i>, vol. 130, no. 5, Acoustical Society of America, 2011, pp. 2694–99, doi:<a href=\"https://doi.org/10.1121/1.3643816\">10.1121/1.3643816</a>.","ama":"Higginbotham AP, Guillen A, Jones N, Donnelly T, Bernoff A. Evidence of the harmonic Faraday instability in ultrasonic atomization experiments with a deep, inviscid fluid. <i>Journal of the Acoustical Society of America</i>. 2011;130(5):2694-2699. doi:<a href=\"https://doi.org/10.1121/1.3643816\">10.1121/1.3643816</a>","ieee":"A. P. Higginbotham, A. Guillen, N. Jones, T. Donnelly, and A. Bernoff, “Evidence of the harmonic Faraday instability in ultrasonic atomization experiments with a deep, inviscid fluid,” <i>Journal of the Acoustical Society of America</i>, vol. 130, no. 5. Acoustical Society of America, pp. 2694–2699, 2011.","apa":"Higginbotham, A. P., Guillen, A., Jones, N., Donnelly, T., &#38; Bernoff, A. (2011). Evidence of the harmonic Faraday instability in ultrasonic atomization experiments with a deep, inviscid fluid. <i>Journal of the Acoustical Society of America</i>. Acoustical Society of America. <a href=\"https://doi.org/10.1121/1.3643816\">https://doi.org/10.1121/1.3643816</a>"},"status":"public","year":"2011","quality_controlled":"1","type":"journal_article","page":"2694 - 2699","publication":"Journal of the Acoustical Society of America","volume":130,"issue":"5","title":"Evidence of the harmonic Faraday instability in ultrasonic atomization experiments with a deep, inviscid fluid","oa_version":"None","external_id":{"pmid":["    22087897"]},"publication_status":"published","day":"16","fulldoi":"https://doi.org/10.1121/1.3643816","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"A popular method for generating micron-sized aerosols is to submerge ultrasonic (ω ∼ MHz) piezoelectric oscillators in a water bath. The submerged oscillator atomizes the fluid, creating droplets with radii proportional to the wavelength of the standing wave at the fluid surface. Classical theory for the Faraday instability predicts a parametric instability driving a capillary wave at the subharmonic (ω / 2) frequency. For many applications it is desirable to reduce the size of the droplets; however, using higher frequency oscillators becomes impractical beyond a few MHz. Observations are presented that demonstrate that smaller droplets may also be created by increasing the driving amplitude of the oscillator, and that this effect becomes more pronounced for large driving frequencies. It is shown that these observations are consistent with a transition from droplets associated with subharmonic (ω/2) capillary waves to harmonic (ω) capillary waves induced by larger driving frequencies and amplitudes, as predicted by a stability analysis of the capillary waves."}],"date_created":"2018-12-11T11:44:34Z","date_published":"2011-11-16T00:00:00Z","publist_id":"7964","author":[{"last_name":"Higginbotham","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","full_name":"Higginbotham, Andrew P","first_name":"Andrew P","orcid":"0000-0003-2607-2363"},{"full_name":"Guillen, A","first_name":"A","last_name":"Guillen"},{"first_name":"Nick","full_name":"Jones, Nick","last_name":"Jones"},{"full_name":"Donnelly, Tom","first_name":"Tom","last_name":"Donnelly"},{"first_name":"Andrew","full_name":"Bernoff, Andrew","last_name":"Bernoff"}]},{"fulldoi":"https://doi.org/10.1038/nclimate1169","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_processing_charge":"No","abstract":[{"lang":"eng","text":"Understanding and predicting the response of the hydrological cycle to climate change is a major challenge with important societal implications. Much progress has been made in understanding the response of global average precipitation by considering the energy balances of the atmosphere and the surface1,2,3,4,5,6. This energetic perspective reveals that changes in temperature, greenhouse gases, aerosols, solar forcing and cloud feedbacks can all affect the global average rate of precipitation5,7,8,9,10,11. Local precipitation changes have conventionally been analysed using the water vapour budget, but here we show that the energetic approach can be extended to local changes in precipitation by including changes in horizontal energy transport. In simulations of twenty-first century climate change, this energy transport accounts for much of the spatial variability in precipitation change. We show that changes in radiative and surface sensible heat fluxes are a guide to the local precipitation response over land and at large scales, but not at small scales over the ocean, where cloud and water vapour radiative feedbacks dampen the response. The energetic approach described here helps bridge the gap between our understanding of global and regional precipitation changes. It could be applied to better understand the response of regional precipitation to different radiative forcings, including geo-engineering schemes, as well as to understand the differences between the fast and slow responses of regional precipitation to such forcings."}],"title":"An energetic perspective on the regional response of precipitation to climate change","oa_version":"None","day":"24","publication_status":"published","author":[{"first_name":"Caroline J","full_name":"Muller, Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","orcid":"0000-0001-5836-5350","last_name":"Muller"},{"first_name":"P. A.","full_name":"O’Gorman, P. A.","last_name":"O’Gorman"}],"date_created":"2021-02-15T14:39:29Z","article_type":"original","date_published":"2011-07-24T00:00:00Z","intvolume":"         1","date_updated":"2022-01-24T13:52:11Z","_id":"9143","doi":"10.1038/nclimate1169","extern":"1","publisher":"Springer Nature","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1758-678X","1758-6798"]},"month":"07","type":"journal_article","page":"266-271","publication":"Nature Climate Change","volume":1,"issue":"5","citation":{"ieee":"C. J. Muller and P. A. O’Gorman, “An energetic perspective on the regional response of precipitation to climate change,” <i>Nature Climate Change</i>, vol. 1, no. 5. Springer Nature, pp. 266–271, 2011.","apa":"Muller, C. J., &#38; O’Gorman, P. A. (2011). An energetic perspective on the regional response of precipitation to climate change. <i>Nature Climate Change</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nclimate1169\">https://doi.org/10.1038/nclimate1169</a>","chicago":"Muller, Caroline J, and P. A. O’Gorman. “An Energetic Perspective on the Regional Response of Precipitation to Climate Change.” <i>Nature Climate Change</i>. Springer Nature, 2011. <a href=\"https://doi.org/10.1038/nclimate1169\">https://doi.org/10.1038/nclimate1169</a>.","ista":"Muller CJ, O’Gorman PA. 2011. An energetic perspective on the regional response of precipitation to climate change. Nature Climate Change. 1(5), 266–271.","short":"C.J. Muller, P.A. O’Gorman, Nature Climate Change 1 (2011) 266–271.","ama":"Muller CJ, O’Gorman PA. An energetic perspective on the regional response of precipitation to climate change. <i>Nature Climate Change</i>. 2011;1(5):266-271. doi:<a href=\"https://doi.org/10.1038/nclimate1169\">10.1038/nclimate1169</a>","mla":"Muller, Caroline J., and P. A. O’Gorman. “An Energetic Perspective on the Regional Response of Precipitation to Climate Change.” <i>Nature Climate Change</i>, vol. 1, no. 5, Springer Nature, 2011, pp. 266–71, doi:<a href=\"https://doi.org/10.1038/nclimate1169\">10.1038/nclimate1169</a>."},"status":"public","year":"2011","quality_controlled":"1"},{"abstract":[{"lang":"eng","text":"A cloud-resolving model is used to investigate the effect of warming on high percentiles of precipitation (precipitation extremes) in the idealized setting of radiative-convective equilibrium. While this idealized setting does not allow for several factors that influence precipitation in the tropics, it does allow for an evaluation of the response of precipitation extremes to warming in simulations with resolved rather than parameterized convection. The methodology developed should also be applicable to less idealized simulations.\r\n\r\nModeled precipitation extremes are found to increase in magnitude in response to an increase in sea surface temperature. A dry static energy budget is used to relate the changes in precipitation extremes to changes in atmospheric temperature, vertical velocity, and precipitation efficiency. To first order, the changes in precipitation extremes are captured by changes in the mean temperature structure of the atmosphere. Changes in vertical velocities play a secondary role and tend to weaken the strength of precipitation extremes, despite an intensification of updraft velocities in the upper troposphere. The influence of changes in condensate transports on precipitation extremes is quantified in terms of a precipitation efficiency; it does not change greatly with warming.\r\n\r\nTropical precipitation extremes have previously been found to increase at a greater fractional rate than the amount of atmospheric water vapor in observations of present-day variability and in some climate model simulations with parameterized convection. But the fractional increases in precipitation extremes in the cloud-resolving simulations are comparable in magnitude to those in surface water vapor concentrations (owing to a partial cancellation between dynamical and thermodynamical changes), and are substantially less than the fractional increases in column water vapor."}],"fulldoi":"https://doi.org/10.1175/2011jcli3876.1","publication_status":"published","day":"01","keyword":["Atmospheric Science"],"author":[{"orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","first_name":"Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller"},{"last_name":"O’Gorman","full_name":"O’Gorman, Paul A.","first_name":"Paul A."},{"last_name":"Back","full_name":"Back, Larissa E.","first_name":"Larissa E."}],"article_type":"original","doi":"10.1175/2011jcli3876.1","intvolume":"        24","date_updated":"2022-01-24T13:52:46Z","oa":1,"publisher":"American Meteorological Society","issue":"11","volume":24,"publication":"Journal of Climate","type":"journal_article","citation":{"short":"C.J. Muller, P.A. O’Gorman, L.E. Back, Journal of Climate 24 (2011) 2784–2800.","ista":"Muller CJ, O’Gorman PA, Back LE. 2011. Intensification of precipitation extremes with warming in a cloud-resolving model. Journal of Climate. 24(11), 2784–2800.","mla":"Muller, Caroline J., et al. “Intensification of Precipitation Extremes with Warming in a Cloud-Resolving Model.” <i>Journal of Climate</i>, vol. 24, no. 11, American Meteorological Society, 2011, pp. 2784–800, doi:<a href=\"https://doi.org/10.1175/2011jcli3876.1\">10.1175/2011jcli3876.1</a>.","ama":"Muller CJ, O’Gorman PA, Back LE. Intensification of precipitation extremes with warming in a cloud-resolving model. <i>Journal of Climate</i>. 2011;24(11):2784-2800. doi:<a href=\"https://doi.org/10.1175/2011jcli3876.1\">10.1175/2011jcli3876.1</a>","chicago":"Muller, Caroline J, Paul A. O’Gorman, and Larissa E. Back. “Intensification of Precipitation Extremes with Warming in a Cloud-Resolving Model.” <i>Journal of Climate</i>. American Meteorological Society, 2011. <a href=\"https://doi.org/10.1175/2011jcli3876.1\">https://doi.org/10.1175/2011jcli3876.1</a>.","apa":"Muller, C. J., O’Gorman, P. A., &#38; Back, L. E. (2011). Intensification of precipitation extremes with warming in a cloud-resolving model. <i>Journal of Climate</i>. American Meteorological Society. <a href=\"https://doi.org/10.1175/2011jcli3876.1\">https://doi.org/10.1175/2011jcli3876.1</a>","ieee":"C. J. Muller, P. A. O’Gorman, and L. E. Back, “Intensification of precipitation extremes with warming in a cloud-resolving model,” <i>Journal of Climate</i>, vol. 24, no. 11. American Meteorological Society, pp. 2784–2800, 2011."},"article_processing_charge":"No","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","oa_version":"Published Version","title":"Intensification of precipitation extremes with warming in a cloud-resolving model","date_published":"2011-06-01T00:00:00Z","date_created":"2021-02-15T14:39:57Z","extern":"1","_id":"9144","month":"06","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0894-8755"],"eissn":["1520-0442"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1175/2011JCLI3876.1"}],"page":"2784-2800","year":"2011","status":"public","quality_controlled":"1"},{"month":"08","language":[{"iso":"eng"}],"publisher":"American Physical Society","doi":"10.1103/PhysRevLett.107.078104","extern":"1","_id":"918","date_updated":"2021-01-12T08:21:54Z","intvolume":"       107","status":"public","year":"2011","citation":{"ieee":"E. B. Hannezo, J. Prost, and J. Joanny, “Instabilities of monolayered epithelia Shape and structure of villi and crypts,” <i>Physical Review Letters</i>, vol. 107, no. 7. American Physical Society, 2011.","apa":"Hannezo, E. B., Prost, J., &#38; Joanny, J. (2011). Instabilities of monolayered epithelia Shape and structure of villi and crypts. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.107.078104\">https://doi.org/10.1103/PhysRevLett.107.078104</a>","chicago":"Hannezo, Edouard B, Jacques Prost, and Jean Joanny. “Instabilities of Monolayered Epithelia Shape and Structure of Villi and Crypts.” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevLett.107.078104\">https://doi.org/10.1103/PhysRevLett.107.078104</a>.","mla":"Hannezo, Edouard B., et al. “Instabilities of Monolayered Epithelia Shape and Structure of Villi and Crypts.” <i>Physical Review Letters</i>, vol. 107, no. 7, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.078104\">10.1103/PhysRevLett.107.078104</a>.","ama":"Hannezo EB, Prost J, Joanny J. Instabilities of monolayered epithelia Shape and structure of villi and crypts. <i>Physical Review Letters</i>. 2011;107(7). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.078104\">10.1103/PhysRevLett.107.078104</a>","short":"E.B. Hannezo, J. Prost, J. Joanny, Physical Review Letters 107 (2011).","ista":"Hannezo EB, Prost J, Joanny J. 2011. Instabilities of monolayered epithelia Shape and structure of villi and crypts. Physical Review Letters. 107(7)."},"issue":"7","publication":"Physical Review Letters","volume":107,"type":"journal_article","publication_status":"published","day":"11","oa_version":"None","title":"Instabilities of monolayered epithelia Shape and structure of villi and crypts","acknowledgement":"We thank S. Fre and M. Huygue for discussion and for showing us in vivo samples and A. Bergès for help with the manuscript.","abstract":[{"text":"We study theoretically the shapes of a dividing epithelial monolayer of cells lying on top of an elastic stroma. The negative tension created by cell division provokes a buckling instability at a finite wave vector leading to the formation of periodic arrays of villi and crypts. The instability is similar to the buckling of a metallic plate under compression. We use the results to rationalize the various structures of the intestinal lining observed in vivo. Taking into account the coupling between cell division and local curvature, we obtain different patterns of villi and crypts, which could explain the different morphologies of the small intestine and the colon.","lang":"eng"}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","fulldoi":"https://doi.org/10.1103/PhysRevLett.107.078104","date_published":"2011-08-11T00:00:00Z","date_created":"2018-12-11T11:49:11Z","author":[{"orcid":"0000-0001-6005-1561","first_name":"Edouard B","full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo"},{"last_name":"Prost","full_name":"Prost, Jacques","first_name":"Jacques"},{"full_name":"Joanny, Jean","first_name":"Jean","last_name":"Joanny"}],"publist_id":"6521"}]