[{"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publisher":"IEEE","publication_identifier":{"isbn":["9781457713507"],"eissn":["2379-2140"]},"scopus_import":"1","oa_version":"None","doi":"10.1109/icdar.2011.23","citation":{"short":"R. Saabni, A.M. Bronstein, in:, 2011 International Conference on Document Analysis and Recognition, IEEE, 2011.","ista":"Saabni R, Bronstein AM. 2011. Fast key-word searching via embedding and active-DTW. 2011 International Conference on Document Analysis and Recognition. 11th International Conference on Document Analysis and Recognition, 6065278.","ama":"Saabni R, Bronstein AM. Fast key-word searching via embedding and active-DTW. In: <i>2011 International Conference on Document Analysis and Recognition</i>. IEEE; 2011. doi:<a href=\"https://doi.org/10.1109/icdar.2011.23\">10.1109/icdar.2011.23</a>","apa":"Saabni, R., &#38; Bronstein, A. M. (2011). Fast key-word searching via embedding and active-DTW. In <i>2011 International Conference on Document Analysis and Recognition</i>. Beijing, China: IEEE. <a href=\"https://doi.org/10.1109/icdar.2011.23\">https://doi.org/10.1109/icdar.2011.23</a>","chicago":"Saabni, Raid, and Alex M. Bronstein. “Fast Key-Word Searching via Embedding and Active-DTW.” In <i>2011 International Conference on Document Analysis and Recognition</i>. IEEE, 2011. <a href=\"https://doi.org/10.1109/icdar.2011.23\">https://doi.org/10.1109/icdar.2011.23</a>.","mla":"Saabni, Raid, and Alex M. Bronstein. “Fast Key-Word Searching via Embedding and Active-DTW.” <i>2011 International Conference on Document Analysis and Recognition</i>, 6065278, IEEE, 2011, doi:<a href=\"https://doi.org/10.1109/icdar.2011.23\">10.1109/icdar.2011.23</a>.","ieee":"R. Saabni and A. M. Bronstein, “Fast key-word searching via embedding and active-DTW,” in <i>2011 International Conference on Document Analysis and Recognition</i>, Beijing, China, 2011."},"date_updated":"2024-12-04T12:08:48Z","abstract":[{"lang":"eng","text":"In this paper we present a novel approach for fast search of handwritten Arabic word-parts within large lexicons. The algorithm runs through three steps to achieve the required results. First it warps multiple appearances of each word-part in the lexicon for embedding into the same euclidean space. The embedding is done based on the warping path produced by the Dynamic Time Warping (DTW) process while calculating the similarity distance. In the next step, all samples of different word-parts are resampled uniformly to the same size. The kd-tree structure is used to store all shapes representing word parts in the lexicon. Fast approximation of k-nearest neighbors generates a short list of candidates to be presented to the next step. In the third step, the Active-DTW [15] algorithm is used to examine each sample in the short list and give final accurate results. We demonstrate our method on a database of 23,500 images of word-parts extracted from the IFN/ENIT database [6] and 22,000 images collected from 93 writers. Our method achieves a speedup of 5 orders of magnitude over the exact method, at the cost of only a 3.8% reduction in accuracy."}],"date_created":"2024-10-15T11:20:54Z","year":"2011","title":"Fast key-word searching via embedding and active-DTW","type":"conference","article_processing_charge":"No","article_number":"6065278","conference":{"end_date":"2011-09-21","location":"Beijing, China","start_date":"2011-09-18","name":"11th International Conference on Document Analysis and Recognition"},"extern":"1","_id":"18394","day":"03","quality_controlled":"1","publication_status":"published","publication":"2011 International Conference on Document Analysis and Recognition","author":[{"last_name":"Saabni","full_name":"Saabni, Raid","first_name":"Raid"},{"id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander","first_name":"Alexander","last_name":"Bronstein","orcid":"0000-0001-9699-8730"}],"date_published":"2011-11-03T00:00:00Z","language":[{"iso":"eng"}],"month":"11","status":"public"},{"date_created":"2024-10-15T11:20:54Z","abstract":[{"text":"Defining a suitable metric is one of the biggest challenges in deformable image fusion from different modalities. In this paper, we propose a novel approach for multi-modal metric learning in the deformable registration framework that consists of embedding data from both modalities into a common metric space whose metric is used to parametrize the similarity. Specifically, we use image representation in the Fourier/Gabor space which introduces invariance to the local pose parameters, and the Hamming metric as the target embedding space, which allows constructing the embedding using boosted learning algorithms. The resulting metric is incorporated into a discrete optimization framework. Very promising results demonstrate the potential of the proposed method.","lang":"eng"}],"title":"Boosted metric learning for 3D multi-modal deformable registration","type":"conference","year":"2011","citation":{"ista":"Michel F, Bronstein M, Bronstein AM, Paragios N. 2011. Boosted metric learning for 3D multi-modal deformable registration. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 5872619.","short":"F. Michel, M. Bronstein, A.M. Bronstein, N. Paragios, in:, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, IEEE, 2011.","ama":"Michel F, Bronstein M, Bronstein AM, Paragios N. Boosted metric learning for 3D multi-modal deformable registration. In: <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro</i>. IEEE; 2011. doi:<a href=\"https://doi.org/10.1109/isbi.2011.5872619\">10.1109/isbi.2011.5872619</a>","mla":"Michel, Fabrice, et al. “Boosted Metric Learning for 3D Multi-Modal Deformable Registration.” <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro</i>, 5872619, IEEE, 2011, doi:<a href=\"https://doi.org/10.1109/isbi.2011.5872619\">10.1109/isbi.2011.5872619</a>.","ieee":"F. Michel, M. Bronstein, A. M. Bronstein, and N. Paragios, “Boosted metric learning for 3D multi-modal deformable registration,” in <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro</i>,  Chicago, IL, United States, 2011.","apa":"Michel, F., Bronstein, M., Bronstein, A. M., &#38; Paragios, N. (2011). Boosted metric learning for 3D multi-modal deformable registration. In <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro</i>.  Chicago, IL, United States: IEEE. <a href=\"https://doi.org/10.1109/isbi.2011.5872619\">https://doi.org/10.1109/isbi.2011.5872619</a>","chicago":"Michel, Fabrice, Michael Bronstein, Alex M. Bronstein, and Nikos Paragios. “Boosted Metric Learning for 3D Multi-Modal Deformable Registration.” In <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro</i>. IEEE, 2011. <a href=\"https://doi.org/10.1109/isbi.2011.5872619\">https://doi.org/10.1109/isbi.2011.5872619</a>."},"date_updated":"2024-12-04T11:55:42Z","article_number":"5872619","conference":{"name":"8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","location":" Chicago, IL, United States","start_date":"2011-03-30","end_date":"2011-04-02"},"extern":"1","article_processing_charge":"No","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","oa_version":"None","scopus_import":"1","doi":"10.1109/isbi.2011.5872619","publication_identifier":{"eissn":["1945-8452"],"isbn":["9781424441280"]},"publisher":"IEEE","author":[{"first_name":"Fabrice","full_name":"Michel, Fabrice","last_name":"Michel"},{"full_name":"Bronstein, Michael","first_name":"Michael","last_name":"Bronstein"},{"orcid":"0000-0001-9699-8730","last_name":"Bronstein","first_name":"Alexander","full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6"},{"last_name":"Paragios","first_name":"Nikos","full_name":"Paragios, Nikos"}],"date_published":"2011-06-09T00:00:00Z","month":"06","status":"public","language":[{"iso":"eng"}],"day":"09","_id":"18406","publication":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","publication_status":"published","quality_controlled":"1"},{"article_processing_charge":"No","citation":{"short":"M.M. Bronstein, A.M. Bronstein, IEEE Transactions on Pattern Analysis and Machine Intelligence 33 (2011) 1065–1071.","ista":"Bronstein MM, Bronstein AM. 2011. Shape recognition with spectral distances. IEEE Transactions on Pattern Analysis and Machine Intelligence. 33(5), 1065–1071.","ama":"Bronstein MM, Bronstein AM. Shape recognition with spectral distances. <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>. 2011;33(5):1065-1071. doi:<a href=\"https://doi.org/10.1109/tpami.2010.210\">10.1109/tpami.2010.210</a>","apa":"Bronstein, M. M., &#38; Bronstein, A. M. (2011). Shape recognition with spectral distances. <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>. Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/tpami.2010.210\">https://doi.org/10.1109/tpami.2010.210</a>","chicago":"Bronstein, Michael M, and Alex M. Bronstein. “Shape Recognition with Spectral Distances.” <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>. Institute of Electrical and Electronics Engineers, 2011. <a href=\"https://doi.org/10.1109/tpami.2010.210\">https://doi.org/10.1109/tpami.2010.210</a>.","mla":"Bronstein, Michael M., and Alex M. Bronstein. “Shape Recognition with Spectral Distances.” <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>, vol. 33, no. 5, Institute of Electrical and Electronics Engineers, 2011, pp. 1065–71, doi:<a href=\"https://doi.org/10.1109/tpami.2010.210\">10.1109/tpami.2010.210</a>.","ieee":"M. M. Bronstein and A. M. Bronstein, “Shape recognition with spectral distances,” <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>, vol. 33, no. 5. Institute of Electrical and Electronics Engineers, pp. 1065–1071, 2011."},"date_updated":"2024-10-22T08:02:31Z","date_created":"2024-10-15T11:20:54Z","abstract":[{"text":"Recent works have shown the use of diffusion geometry for various pattern recognition applications, including nonrigid shape analysis. In this paper, we introduce spectral shape distance as a general framework for distribution-based shape similarity and show that two recent methods for shape similarity due to Rustamov and Mahmoudi and Sapiro are particular cases thereof.","lang":"eng"}],"type":"journal_article","publication_identifier":{"issn":["0162-8828"]},"scopus_import":"1","oa_version":"None","pmid":1,"language":[{"iso":"eng"}],"volume":33,"date_published":"2011-05-01T00:00:00Z","external_id":{"pmid":["21135442"]},"OA_type":"closed access","publication":"IEEE Transactions on Pattern Analysis and Machine Intelligence","intvolume":"        33","day":"01","page":"1065-1071","extern":"1","title":"Shape recognition with spectral distances","year":"2011","publisher":"Institute of Electrical and Electronics Engineers","doi":"10.1109/tpami.2010.210","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"05","status":"public","author":[{"last_name":"Bronstein","full_name":"Bronstein, Michael M","first_name":"Michael M"},{"orcid":"0000-0001-9699-8730","last_name":"Bronstein","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander","first_name":"Alexander"}],"publication_status":"published","quality_controlled":"1","_id":"18411","article_type":"original","issue":"5"},{"quality_controlled":"1","publication_status":"published","publication":"ACM Transactions on Graphics","_id":"18433","intvolume":"        30","day":"01","issue":"1","volume":30,"language":[{"iso":"eng"}],"month":"01","status":"public","author":[{"orcid":"0000-0001-9699-8730","last_name":"Bronstein","first_name":"Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander"},{"first_name":"Michael M.","full_name":"Bronstein, Michael M.","last_name":"Bronstein"},{"full_name":"Guibas, Leonidas J.","first_name":"Leonidas J.","last_name":"Guibas"},{"last_name":"Ovsjanikov","full_name":"Ovsjanikov, Maks","first_name":"Maks"}],"date_published":"2011-01-01T00:00:00Z","publisher":"Association for Computing Machinery","publication_identifier":{"eissn":["1557-7368"],"issn":["0730-0301"]},"scopus_import":"1","oa_version":"None","doi":"10.1145/1899404.1899405","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","page":"1-20","article_processing_charge":"No","extern":"1","citation":{"ista":"Bronstein AM, Bronstein MM, Guibas LJ, Ovsjanikov M. 2011. Shape google: Geometric words and expressions for invariant shape retrieval. ACM Transactions on Graphics. 30(1), 1–20.","short":"A.M. Bronstein, M.M. Bronstein, L.J. Guibas, M. Ovsjanikov, ACM Transactions on Graphics 30 (2011) 1–20.","ama":"Bronstein AM, Bronstein MM, Guibas LJ, Ovsjanikov M. Shape google: Geometric words and expressions for invariant shape retrieval. <i>ACM Transactions on Graphics</i>. 2011;30(1):1-20. doi:<a href=\"https://doi.org/10.1145/1899404.1899405\">10.1145/1899404.1899405</a>","ieee":"A. M. Bronstein, M. M. Bronstein, L. J. Guibas, and M. Ovsjanikov, “Shape google: Geometric words and expressions for invariant shape retrieval,” <i>ACM Transactions on Graphics</i>, vol. 30, no. 1. Association for Computing Machinery, pp. 1–20, 2011.","mla":"Bronstein, Alex M., et al. “Shape Google: Geometric Words and Expressions for Invariant Shape Retrieval.” <i>ACM Transactions on Graphics</i>, vol. 30, no. 1, Association for Computing Machinery, 2011, pp. 1–20, doi:<a href=\"https://doi.org/10.1145/1899404.1899405\">10.1145/1899404.1899405</a>.","chicago":"Bronstein, Alex M., Michael M. Bronstein, Leonidas J. Guibas, and Maks Ovsjanikov. “Shape Google: Geometric Words and Expressions for Invariant Shape Retrieval.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2011. <a href=\"https://doi.org/10.1145/1899404.1899405\">https://doi.org/10.1145/1899404.1899405</a>.","apa":"Bronstein, A. M., Bronstein, M. M., Guibas, L. J., &#38; Ovsjanikov, M. (2011). Shape google: Geometric words and expressions for invariant shape retrieval. <i>ACM Transactions on Graphics</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/1899404.1899405\">https://doi.org/10.1145/1899404.1899405</a>"},"date_updated":"2024-12-18T14:59:43Z","abstract":[{"text":"The computer vision and pattern recognition communities have recently witnessed a surge of feature-based methods in object recognition and image retrieval applications. These methods allow representing images as collections of “visual words” and treat them using text search approaches following the “bag of features” paradigm. In this article, we explore analogous approaches in the 3D world applied to the problem of nonrigid shape retrieval in large databases. Using multiscale diffusion heat kernels as “geometric words,” we construct compact and informative shape descriptors by means of the “bag of features” approach. We also show that considering pairs of “geometric words” (“geometric expressions”) allows creating spatially sensitive bags of features with better discriminative power. Finally, adopting metric learning approaches, we show that shapes can be efficiently represented as binary codes. Our approach achieves state-of-the-art results on the SHREC 2010 large-scale shape retrieval benchmark.","lang":"eng"}],"date_created":"2024-10-15T11:20:55Z","title":"Shape google: Geometric words and expressions for invariant shape retrieval","year":"2011","type":"journal_article"},{"month":"05","status":"public","volume":79,"author":[{"last_name":"Novak","first_name":"Sebastian","id":"461468AE-F248-11E8-B48F-1D18A9856A87","full_name":"Sebastian Novak"}],"date_published":"2011-05-01T00:00:00Z","publication":"Theoretical Population Biology","publication_status":"published","quality_controlled":0,"intvolume":"        79","issue":"3","day":"01","_id":"1863","acknowledgement":"FWF 21305","extern":1,"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","page":"97 - 101","date_created":"2018-12-11T11:54:25Z","abstract":[{"lang":"eng","text":"The Levene model is the simplest mathematical model to describe the evolution of gene frequencies in spatially subdivided populations. It provides insight into how locally varying selection promotes a population’s genetic diversity. Despite its simplicity, interesting problems have remained unsolved even in the diallelic case. In this paper we answer an open problem by establishing that for two alleles at one locus and J demes, up to 2J−1 polymorphic equilibria may coexist. We first present a proof for the case of stable monomorphisms and then show that the result also holds for protected alleles. These findings allow us to prove that any odd number (up to 2J−1) of equilibria is possible, before we extend the proof to even numbers. We conclude with some numerical results and show that for J&gt;2, the proportion of parameter space affording this maximum is extremely small."}],"year":"2011","title":"The number of equilibria in the diallelic Levene model with multiple demes","type":"journal_article","publist_id":"5236","citation":{"ista":"Novak S. 2011. The number of equilibria in the diallelic Levene model with multiple demes. Theoretical Population Biology. 79(3), 97–101.","short":"S. Novak, Theoretical Population Biology 79 (2011) 97–101.","ama":"Novak S. The number of equilibria in the diallelic Levene model with multiple demes. <i>Theoretical Population Biology</i>. 2011;79(3):97-101. doi:<a href=\"https://doi.org/10.1016/j.tpb.2010.12.002\">10.1016/j.tpb.2010.12.002</a>","ieee":"S. Novak, “The number of equilibria in the diallelic Levene model with multiple demes,” <i>Theoretical Population Biology</i>, vol. 79, no. 3. Academic Press, pp. 97–101, 2011.","mla":"Novak, Sebastian. “The Number of Equilibria in the Diallelic Levene Model with Multiple Demes.” <i>Theoretical Population Biology</i>, vol. 79, no. 3, Academic Press, 2011, pp. 97–101, doi:<a href=\"https://doi.org/10.1016/j.tpb.2010.12.002\">10.1016/j.tpb.2010.12.002</a>.","apa":"Novak, S. (2011). The number of equilibria in the diallelic Levene model with multiple demes. <i>Theoretical Population Biology</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.tpb.2010.12.002\">https://doi.org/10.1016/j.tpb.2010.12.002</a>","chicago":"Novak, Sebastian. “The Number of Equilibria in the Diallelic Levene Model with Multiple Demes.” <i>Theoretical Population Biology</i>. Academic Press, 2011. <a href=\"https://doi.org/10.1016/j.tpb.2010.12.002\">https://doi.org/10.1016/j.tpb.2010.12.002</a>."},"date_updated":"2021-01-12T06:53:42Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"doi":"10.1016/j.tpb.2010.12.002","publisher":"Academic Press"},{"publication":"Water Resources Research","intvolume":"        47","day":"01","volume":47,"language":[{"iso":"eng"}],"date_published":"2011-07-01T00:00:00Z","publication_identifier":{"issn":["0043-1397"]},"oa_version":"Published Version","scopus_import":"1","article_processing_charge":"No","article_number":"W07519","citation":{"ama":"Finger D, Pellicciotti F, Konz M, Rimkus S, Burlando P. The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model. <i>Water Resources Research</i>. 2011;47(7). doi:<a href=\"https://doi.org/10.1029/2010wr009824\">10.1029/2010wr009824</a>","ista":"Finger D, Pellicciotti F, Konz M, Rimkus S, Burlando P. 2011. The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model. Water Resources Research. 47(7), W07519.","short":"D. Finger, F. Pellicciotti, M. Konz, S. Rimkus, P. Burlando, Water Resources Research 47 (2011).","ieee":"D. Finger, F. Pellicciotti, M. Konz, S. Rimkus, and P. Burlando, “The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model,” <i>Water Resources Research</i>, vol. 47, no. 7. American Geophysical Union, 2011.","mla":"Finger, David, et al. “The Value of Glacier Mass Balance, Satellite Snow Cover Images, and Hourly Discharge for Improving the Performance of a Physically Based Distributed Hydrological Model.” <i>Water Resources Research</i>, vol. 47, no. 7, W07519, American Geophysical Union, 2011, doi:<a href=\"https://doi.org/10.1029/2010wr009824\">10.1029/2010wr009824</a>.","apa":"Finger, D., Pellicciotti, F., Konz, M., Rimkus, S., &#38; Burlando, P. (2011). The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model. <i>Water Resources Research</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2010wr009824\">https://doi.org/10.1029/2010wr009824</a>","chicago":"Finger, David, Francesca Pellicciotti, Markus Konz, Stefan Rimkus, and Paolo Burlando. “The Value of Glacier Mass Balance, Satellite Snow Cover Images, and Hourly Discharge for Improving the Performance of a Physically Based Distributed Hydrological Model.” <i>Water Resources Research</i>. American Geophysical Union, 2011. <a href=\"https://doi.org/10.1029/2010wr009824\">https://doi.org/10.1029/2010wr009824</a>."},"oa":1,"date_updated":"2024-10-14T12:01:21Z","abstract":[{"lang":"eng","text":"Physically based hydrological models describe natural processes more accurately than conceptual models but require extensive data sets to produce accurate results. To identify the value of different data sets for improving the performance of the distributed hydrological model TOPKAPI we combine a multivariable validation technique with Monte Carlo simulations. The study is carried out in the snow and ice-dominated Rhonegletscher basin, as these types of mountainous basins are generally the most critical with respect to data availability and sensitivity to climate fluctuations. Each observational data set is used individually and in combination with the other data sets to determine a subset of best parameter combinations out of 10,000 Monte Carlos runs performed with randomly generated parameter sets. We validate model results against discharge, glacier mass balance, and satellite snow cover images for a 14 year time period (1994–2007). While the use of all data sets combined provides the best overall model performance (defined by the concurrent best agreement of simulated discharge, snow cover and mass balance with their respective measurements), the use of one or two variables for constraining the model results in poorer performance. Using only one data set for constraining the model glacier mass balance proved to be the most efficient observation leading to the best overall model performance. Our main result is that a combination of discharge and satellite snow cover images is best for improving model performance, since the volumetric information of discharge data and the spatial information of snow cover images are complementary."}],"date_created":"2023-02-20T08:18:03Z","type":"journal_article","quality_controlled":"1","publication_status":"published","_id":"12649","article_type":"original","issue":"7","month":"07","main_file_link":[{"url":"https://doi.org/10.1029/2010WR009824","open_access":"1"}],"status":"public","author":[{"last_name":"Finger","full_name":"Finger, David","first_name":"David"},{"orcid":"0000-0002-5554-8087","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","last_name":"Pellicciotti"},{"last_name":"Konz","full_name":"Konz, Markus","first_name":"Markus"},{"first_name":"Stefan","full_name":"Rimkus, Stefan","last_name":"Rimkus"},{"full_name":"Burlando, Paolo","first_name":"Paolo","last_name":"Burlando"}],"publisher":"American Geophysical Union","doi":"10.1029/2010wr009824","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","title":"The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model","year":"2011"},{"month":"07","status":"public","language":[{"iso":"eng"}],"edition":"1","author":[{"first_name":"Peter","full_name":"Molnar, Peter","last_name":"Molnar"},{"full_name":"Burlando, Paolo","first_name":"Paolo","last_name":"Burlando"},{"last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","first_name":"Francesca"}],"date_published":"2011-07-01T00:00:00Z","alternative_title":["Encyclopedia of Earth Sciences Series"],"publication":"Encyclopedia of Snow, Ice and Glaciers","quality_controlled":"1","publication_status":"published","day":"01","_id":"12650","extern":"1","page":"1084-1089","article_processing_charge":"No","date_created":"2023-02-20T08:18:07Z","abstract":[{"lang":"eng","text":"Streamflow is a hydrological variable measured at a defined river cross-section; it spatially integrates the runoff generating processes in the contributing watershed, including precipitation and air temperature. Trends in streamflow are progressive changes in the time series of streamflow that can be detected with statistical methods and their statistical significance can be assessed. Mountainous regions are particularly vulnerable to streamflow change because of their high specific runoff and the sensitivity to the distribution of precipitation and air temperature, and the processes of snow accumulation and melt."}],"type":"book_chapter","year":"2011","title":"Streamflow Trends in Mountainous Regions","editor":[{"last_name":"Singh","first_name":"Vijay","full_name":"Singh, Vijay"},{"last_name":"Singh","first_name":"Pratap","full_name":"Singh, Pratap"},{"first_name":"Umesh","full_name":"Haritashya, Umesh","last_name":"Haritashya"}],"citation":{"apa":"Molnar, P., Burlando, P., &#38; Pellicciotti, F. (2011). Streamflow Trends in Mountainous Regions. In V. Singh, P. Singh, &#38; U. Haritashya (Eds.), <i>Encyclopedia of Snow, Ice and Glaciers</i> (1st ed., pp. 1084–1089). Dordrecht: Springer Nature. <a href=\"https://doi.org/10.1007/978-90-481-2642-2_543\">https://doi.org/10.1007/978-90-481-2642-2_543</a>","chicago":"Molnar, Peter, Paolo Burlando, and Francesca Pellicciotti. “Streamflow Trends in Mountainous Regions.” In <i>Encyclopedia of Snow, Ice and Glaciers</i>, edited by Vijay Singh, Pratap Singh, and Umesh Haritashya, 1st ed., 1084–89. Dordrecht: Springer Nature, 2011. <a href=\"https://doi.org/10.1007/978-90-481-2642-2_543\">https://doi.org/10.1007/978-90-481-2642-2_543</a>.","mla":"Molnar, Peter, et al. “Streamflow Trends in Mountainous Regions.” <i>Encyclopedia of Snow, Ice and Glaciers</i>, edited by Vijay Singh et al., 1st ed., Springer Nature, 2011, pp. 1084–89, doi:<a href=\"https://doi.org/10.1007/978-90-481-2642-2_543\">10.1007/978-90-481-2642-2_543</a>.","ieee":"P. Molnar, P. Burlando, and F. Pellicciotti, “Streamflow Trends in Mountainous Regions,” in <i>Encyclopedia of Snow, Ice and Glaciers</i>, 1st ed., V. Singh, P. Singh, and U. Haritashya, Eds. Dordrecht: Springer Nature, 2011, pp. 1084–1089.","short":"P. Molnar, P. Burlando, F. Pellicciotti, in:, V. Singh, P. Singh, U. Haritashya (Eds.), Encyclopedia of Snow, Ice and Glaciers, 1st ed., Springer Nature, Dordrecht, 2011, pp. 1084–1089.","ista":"Molnar P, Burlando P, Pellicciotti F. 2011.Streamflow Trends in Mountainous Regions. In: Encyclopedia of Snow, Ice and Glaciers. Encyclopedia of Earth Sciences Series, , 1084–1089.","ama":"Molnar P, Burlando P, Pellicciotti F. Streamflow Trends in Mountainous Regions. In: Singh V, Singh P, Haritashya U, eds. <i>Encyclopedia of Snow, Ice and Glaciers</i>. 1st ed. Dordrecht: Springer Nature; 2011:1084-1089. doi:<a href=\"https://doi.org/10.1007/978-90-481-2642-2_543\">10.1007/978-90-481-2642-2_543</a>"},"date_updated":"2023-02-20T10:35:28Z","oa_version":"None","scopus_import":"1","doi":"10.1007/978-90-481-2642-2_543","place":"Dordrecht","publisher":"Springer Nature","publication_identifier":{"eisbn":["978-90-481-2642-2"],"eissn":["1871-756X"],"issn":["1388-4360"],"isbn":["978-90-481-2641-5"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"date_published":"2011-12-16T00:00:00Z","keyword":["Paleontology","Space and Planetary Science","Earth and Planetary Sciences (miscellaneous)","Atmospheric Science","Earth-Surface Processes","Geochemistry and Petrology","Soil Science","Water Science and Technology","Ecology","Aquatic Science","Forestry","Oceanography","Geophysics"],"volume":116,"language":[{"iso":"eng"}],"intvolume":"       116","day":"16","publication":"Journal of Geophysical Research: Atmospheres","abstract":[{"lang":"eng","text":"Temperature data from three Automatic Weather Stations and twelve Temperature Loggers are used to investigate the spatiotemporal variability of temperature over a glacier, its main atmospheric controls, the suitability of extrapolation techniques and their effect on melt modeling. We use data collected on Juncal Norte Glacier, central Chile, during one ablation season. We examine temporal and spatial variability in lapse rates (LRs), together with alternative statistical interpolation methods. The main control over the glacier thermal regime is the development of a katabatic boundary layer (KBL). Katabatic wind occurs at night and in the morning and is eroded in the afternoon. LRs reveal strong diurnal variability, with steeper LRs during the day when the katabatic wind weakens and shallower LRs during the night and morning. We suggest that temporally variable LRs should be used to account for the observed change. They tend to be steeper than equivalent constant LRs, and therefore result in a reduction in simulated melt compared to use of constant LRs when extrapolating from lower to higher elevations. In addition to the temporal variability, the temperature-elevation relationship varies also in space. Differences are evident between local LRs and including such variability in melt modeling affects melt simulations. Extrapolation methods based on the spatial variability of the observations after removal of the elevation trend, such as Inverse Distance Weighting or Kriging, do not seem necessary for simulations of gridded temperature data over a glacier."}],"date_created":"2023-02-20T08:18:14Z","type":"journal_article","citation":{"ama":"Petersen L, Pellicciotti F. Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile. <i>Journal of Geophysical Research: Atmospheres</i>. 2011;116(D23). doi:<a href=\"https://doi.org/10.1029/2011jd015842\">10.1029/2011jd015842</a>","ista":"Petersen L, Pellicciotti F. 2011. Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile. Journal of Geophysical Research: Atmospheres. 116(D23), D23109.","short":"L. Petersen, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 116 (2011).","mla":"Petersen, L., and Francesca Pellicciotti. “Spatial and Temporal Variability of Air Temperature on a Melting Glacier: Atmospheric Controls, Extrapolation Methods and Their Effect on Melt Modeling, Juncal Norte Glacier, Chile.” <i>Journal of Geophysical Research: Atmospheres</i>, vol. 116, no. D23, D23109, American Geophysical Union, 2011, doi:<a href=\"https://doi.org/10.1029/2011jd015842\">10.1029/2011jd015842</a>.","ieee":"L. Petersen and F. Pellicciotti, “Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile,” <i>Journal of Geophysical Research: Atmospheres</i>, vol. 116, no. D23. American Geophysical Union, 2011.","chicago":"Petersen, L., and Francesca Pellicciotti. “Spatial and Temporal Variability of Air Temperature on a Melting Glacier: Atmospheric Controls, Extrapolation Methods and Their Effect on Melt Modeling, Juncal Norte Glacier, Chile.” <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union, 2011. <a href=\"https://doi.org/10.1029/2011jd015842\">https://doi.org/10.1029/2011jd015842</a>.","apa":"Petersen, L., &#38; Pellicciotti, F. (2011). Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile. <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2011jd015842\">https://doi.org/10.1029/2011jd015842</a>"},"oa":1,"date_updated":"2024-10-14T12:01:08Z","article_number":"D23109","article_processing_charge":"No","oa_version":"Published Version","scopus_import":"1","publication_identifier":{"issn":["0148-0227"]},"author":[{"last_name":"Petersen","full_name":"Petersen, L.","first_name":"L."},{"orcid":"0000-0002-5554-8087","last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"}],"month":"12","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2011JD01584"}],"article_type":"original","issue":"D23","_id":"12651","publication_status":"published","quality_controlled":"1","year":"2011","title":"Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1029/2011jd015842","publisher":"American Geophysical Union"},{"year":"2011","title":"Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling","extern":"1","page":"367-381","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.3189/002214311796406013","publisher":"Cambridge University Press","author":[{"orcid":"0000-0002-5554-8087","last_name":"Pellicciotti","first_name":"Francesca","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"first_name":"Thomas","full_name":"Raschle, Thomas","last_name":"Raschle"},{"full_name":"Huerlimann, Thomas","first_name":"Thomas","last_name":"Huerlimann"},{"first_name":"Marco","full_name":"Carenzo, Marco","last_name":"Carenzo"},{"first_name":"Paolo","full_name":"Burlando, Paolo","last_name":"Burlando"}],"month":"03","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/002214311796406013"}],"article_type":"original","issue":"202","_id":"12652","publication_status":"published","quality_controlled":"1","abstract":[{"text":"We explore the robustness and transferability of parameterizations of cloud radiative forcing used in glacier melt models at two sites in the Swiss Alps. We also look at the rationale behind some of the most commonly used approaches, and explore the relationship between cloud transmittance and several standard meteorological variables. The 2 m air-temperature diurnal range is the best predictor of variations in cloud transmittance. However, linear and exponential parameterizations can only explain 30–50% of the observed variance in computed cloud transmittance factors. We examine the impact of modelled cloud transmittance factors on both solar radiation and ablation rates computed with an enhanced temperature-index model. The melt model performance decreases when modelled radiation is used, the reduction being due to an underestimation of incoming solar radiation on clear-sky days. The model works well under overcast conditions. We also seek alternatives to the use of in situ ground data. However, outputs from an atmospheric model (2.2 km horizontal resolution) do not seem to provide an alternative to the parameterizations of cloud radiative forcing based on observations of air temperature at glacier automatic weather stations. Conversely, the correct definition of overcast conditions is important.","lang":"eng"}],"date_created":"2023-02-20T08:18:21Z","type":"journal_article","citation":{"ista":"Pellicciotti F, Raschle T, Huerlimann T, Carenzo M, Burlando P. 2011. Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling. Journal of Glaciology. 57(202), 367–381.","short":"F. Pellicciotti, T. Raschle, T. Huerlimann, M. Carenzo, P. Burlando, Journal of Glaciology 57 (2011) 367–381.","ama":"Pellicciotti F, Raschle T, Huerlimann T, Carenzo M, Burlando P. Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling. <i>Journal of Glaciology</i>. 2011;57(202):367-381. doi:<a href=\"https://doi.org/10.3189/002214311796406013\">10.3189/002214311796406013</a>","apa":"Pellicciotti, F., Raschle, T., Huerlimann, T., Carenzo, M., &#38; Burlando, P. (2011). Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling. <i>Journal of Glaciology</i>. Cambridge University Press. <a href=\"https://doi.org/10.3189/002214311796406013\">https://doi.org/10.3189/002214311796406013</a>","chicago":"Pellicciotti, Francesca, Thomas Raschle, Thomas Huerlimann, Marco Carenzo, and Paolo Burlando. “Transmission of Solar Radiation through Clouds on Melting Glaciers: A Comparison of Parameterizations and Their Impact on Melt Modelling.” <i>Journal of Glaciology</i>. Cambridge University Press, 2011. <a href=\"https://doi.org/10.3189/002214311796406013\">https://doi.org/10.3189/002214311796406013</a>.","mla":"Pellicciotti, Francesca, et al. “Transmission of Solar Radiation through Clouds on Melting Glaciers: A Comparison of Parameterizations and Their Impact on Melt Modelling.” <i>Journal of Glaciology</i>, vol. 57, no. 202, Cambridge University Press, 2011, pp. 367–81, doi:<a href=\"https://doi.org/10.3189/002214311796406013\">10.3189/002214311796406013</a>.","ieee":"F. Pellicciotti, T. Raschle, T. Huerlimann, M. Carenzo, and P. Burlando, “Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling,” <i>Journal of Glaciology</i>, vol. 57, no. 202. Cambridge University Press, pp. 367–381, 2011."},"oa":1,"date_updated":"2024-10-14T12:00:58Z","article_processing_charge":"No","oa_version":"Published Version","scopus_import":"1","publication_identifier":{"eissn":["1727-5652"],"issn":["0022-1430"]},"date_published":"2011-03-01T00:00:00Z","volume":57,"language":[{"iso":"eng"}],"intvolume":"        57","day":"01","publication":"Journal of Glaciology"},{"doi":"10.1016/j.neuron.2011.03.028","publisher":"Elsevier","date_created":"2018-12-11T11:51:14Z","abstract":[{"lang":"eng","text":"Recent experiments have shown that motion detection in Drosophila starts with splitting the visual input into two parallel channels encoding brightness increments (ON) or decrements (OFF). This suggests the existence of either two (ON-ON, OFF-OFF) or four (for all pairwise interactions) separate motion detectors. To decide between these possibilities, we stimulated flies using sequences of ON and OFF brightness pulses while recording from motion-sensitive tangential cells. We found direction-selective responses to sequences of same sign (ON-ON, OFF-OFF), but not of opposite sign (ON-OFF, OFF-ON), refuting the existence of four separate detectors. Based on further measurements, we propose a model that reproduces a variety of additional experimental data sets, including ones that were previously interpreted as support for four separate detectors. Our experiments and the derived model mark an important step in guiding further dissection of the fly motion detection circuit."}],"title":"Internal structure of the fly elementary motion detector","year":"2011","type":"journal_article","citation":{"short":"H. Eichner, M.A. Jösch, B. Schnell, D. Reiff, A. Borst, Neuron 70 (2011) 1155–1164.","ista":"Eichner H, Jösch MA, Schnell B, Reiff D, Borst A. 2011. Internal structure of the fly elementary motion detector. Neuron. 70(6), 1155–1164.","ama":"Eichner H, Jösch MA, Schnell B, Reiff D, Borst A. Internal structure of the fly elementary motion detector. <i>Neuron</i>. 2011;70(6):1155-1164. doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.03.028\">10.1016/j.neuron.2011.03.028</a>","mla":"Eichner, Hubert, et al. “Internal Structure of the Fly Elementary Motion Detector.” <i>Neuron</i>, vol. 70, no. 6, Elsevier, 2011, pp. 1155–64, doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.03.028\">10.1016/j.neuron.2011.03.028</a>.","ieee":"H. Eichner, M. A. Jösch, B. Schnell, D. Reiff, and A. Borst, “Internal structure of the fly elementary motion detector,” <i>Neuron</i>, vol. 70, no. 6. Elsevier, pp. 1155–1164, 2011.","chicago":"Eichner, Hubert, Maximilian A Jösch, Bettina Schnell, Dierk Reiff, and Alexander Borst. “Internal Structure of the Fly Elementary Motion Detector.” <i>Neuron</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.neuron.2011.03.028\">https://doi.org/10.1016/j.neuron.2011.03.028</a>.","apa":"Eichner, H., Jösch, M. A., Schnell, B., Reiff, D., &#38; Borst, A. (2011). Internal structure of the fly elementary motion detector. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2011.03.028\">https://doi.org/10.1016/j.neuron.2011.03.028</a>"},"publist_id":"5969","date_updated":"2021-01-12T06:49:43Z","extern":1,"page":"1155 - 1164","intvolume":"        70","day":"23","issue":"6","_id":"1299","publication":"Neuron","publication_status":"published","quality_controlled":0,"author":[{"last_name":"Eichner","full_name":"Eichner, Hubert","first_name":"Hubert"},{"orcid":"0000-0002-3937-1330","first_name":"Maximilian A","full_name":"Maximilian Jösch","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","last_name":"Jösch"},{"first_name":"Bettina","full_name":"Schnell, Bettina","last_name":"Schnell"},{"last_name":"Reiff","full_name":"Reiff, Dierk F","first_name":"Dierk"},{"first_name":"Alexander","full_name":"Borst, Alexander","last_name":"Borst"}],"date_published":"2011-06-23T00:00:00Z","month":"06","status":"public","volume":70},{"publication_status":"published","quality_controlled":0,"publication":"Nature Structural and Molecular Biology","_id":"1985","intvolume":"        18","day":"01","issue":"5","volume":18,"month":"05","status":"public","author":[{"orcid":"0000-0001-7309-9724","last_name":"Loose","full_name":"Martin Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87","first_name":"Martin"},{"first_name":"Elisabeth","full_name":"Fischer-Friedrich, Elisabeth","last_name":"Fischer Friedrich"},{"last_name":"Herold","first_name":"Christoph","full_name":"Herold, Christoph"},{"last_name":"Kruse","first_name":"Karsten","full_name":"Kruse, Karsten"},{"last_name":"Schwille","first_name":"Petra","full_name":"Schwille, Petra "}],"date_published":"2011-05-01T00:00:00Z","publisher":"Nature Publishing Group","doi":"10.1038/nsmb.2037","page":"577 - 583","acknowledgement":"This work was also supported by the Max Planck Society (M.L., E.F.-F., P.S.).","extern":1,"publist_id":"5098","citation":{"ama":"Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. <i>Nature Structural and Molecular Biology</i>. 2011;18(5):577-583. doi:<a href=\"https://doi.org/10.1038/nsmb.2037\">10.1038/nsmb.2037</a>","short":"M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, P. Schwille, Nature Structural and Molecular Biology 18 (2011) 577–583.","ista":"Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. 2011. Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nature Structural and Molecular Biology. 18(5), 577–583.","chicago":"Loose, Martin, Elisabeth Fischer Friedrich, Christoph Herold, Karsten Kruse, and Petra Schwille. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane Interaction of MinE.” <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group, 2011. <a href=\"https://doi.org/10.1038/nsmb.2037\">https://doi.org/10.1038/nsmb.2037</a>.","apa":"Loose, M., Fischer Friedrich, E., Herold, C., Kruse, K., &#38; Schwille, P. (2011). Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nsmb.2037\">https://doi.org/10.1038/nsmb.2037</a>","ieee":"M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, and P. Schwille, “Min protein patterns emerge from rapid rebinding and membrane interaction of MinE,” <i>Nature Structural and Molecular Biology</i>, vol. 18, no. 5. Nature Publishing Group, pp. 577–583, 2011.","mla":"Loose, Martin, et al. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane Interaction of MinE.” <i>Nature Structural and Molecular Biology</i>, vol. 18, no. 5, Nature Publishing Group, 2011, pp. 577–83, doi:<a href=\"https://doi.org/10.1038/nsmb.2037\">10.1038/nsmb.2037</a>."},"date_updated":"2021-01-12T06:54:31Z","date_created":"2018-12-11T11:55:03Z","abstract":[{"lang":"eng","text":"\n\nIn Escherichia coli, the pole-to-pole oscillation of the Min proteins directs septum formation to midcell, which is required for symmetric cell division. In vitro, protein waves emerge from the self-organization of MinD, a membrane-binding ATPase, and its activator MinE. For wave propagation, the proteins need to cycle through states of collective membrane binding and unbinding. Although MinD presumably undergoes cooperative membrane attachment, it is unclear how synchronous detachment is coordinated. We used confocal and single-molecule microscopy to elucidate the order of events during Min wave propagation. We propose that protein detachment at the rear of the wave, and the formation of the E-ring, are accomplished by two complementary processes: first, local accumulation of MinE due to rapid rebinding, leading to dynamic instability; and second, a structural change induced by membrane-interaction of MinE in an equimolar MinD-MinE (MinDE) complex, which supports the robustness of pattern formation."}],"title":"Min protein patterns emerge from rapid rebinding and membrane interaction of MinE","type":"journal_article","year":"2011"},{"volume":40,"status":"public","month":"06","date_published":"2011-06-09T00:00:00Z","author":[{"orcid":"0000-0001-7309-9724","last_name":"Loose","first_name":"Martin","full_name":"Martin Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kruse, Karsten","first_name":"Karsten","last_name":"Kruse"},{"first_name":"Petra","full_name":"Schwille, Petra ","last_name":"Schwille"}],"publication_status":"published","quality_controlled":0,"publication":"Annual Review of Biophysics","_id":"1986","issue":"1","day":"09","intvolume":"        40","page":"315 - 336","extern":1,"date_updated":"2021-01-12T06:54:31Z","citation":{"ista":"Loose M, Kruse K, Schwille P. 2011. Protein self-organization: Lessons from the min system. Annual Review of Biophysics. 40(1), 315–336.","short":"M. Loose, K. Kruse, P. Schwille, Annual Review of Biophysics 40 (2011) 315–336.","ama":"Loose M, Kruse K, Schwille P. Protein self-organization: Lessons from the min system. <i>Annual Review of Biophysics</i>. 2011;40(1):315-336. doi:<a href=\"https://doi.org/10.1146/annurev-biophys-042910-155332\">10.1146/annurev-biophys-042910-155332</a>","mla":"Loose, Martin, et al. “Protein Self-Organization: Lessons from the Min System.” <i>Annual Review of Biophysics</i>, vol. 40, no. 1, Annual Reviews, 2011, pp. 315–36, doi:<a href=\"https://doi.org/10.1146/annurev-biophys-042910-155332\">10.1146/annurev-biophys-042910-155332</a>.","ieee":"M. Loose, K. Kruse, and P. Schwille, “Protein self-organization: Lessons from the min system,” <i>Annual Review of Biophysics</i>, vol. 40, no. 1. Annual Reviews, pp. 315–336, 2011.","chicago":"Loose, Martin, Karsten Kruse, and Petra Schwille. “Protein Self-Organization: Lessons from the Min System.” <i>Annual Review of Biophysics</i>. Annual Reviews, 2011. <a href=\"https://doi.org/10.1146/annurev-biophys-042910-155332\">https://doi.org/10.1146/annurev-biophys-042910-155332</a>.","apa":"Loose, M., Kruse, K., &#38; Schwille, P. (2011). Protein self-organization: Lessons from the min system. <i>Annual Review of Biophysics</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev-biophys-042910-155332\">https://doi.org/10.1146/annurev-biophys-042910-155332</a>"},"publist_id":"5097","title":"Protein self-organization: Lessons from the min system","type":"journal_article","year":"2011","abstract":[{"lang":"eng","text":"One of the most fundamental features of biological systems is probably their ability to self-organize in space and time on different scales. Despite many elaborate theoretical models of how molecular self-organization can come about, only a few experimental systems of biological origin have so far been rigorously described, due mostly to their inherent complexity. The most promising strategy of modern biophysics is thus to identify minimal biological systems showing self-organized emergent behavior. One of the best-understood examples of protein self-organization, which has recently been successfully reconstituted in vitro, is represented by the oscillations of the Min proteins in Escherichia coli. In this review, we summarize the current understanding of the mechanism of Min protein self-organization in vivo and in vitro. We discuss the potential of the Min oscillations to sense the geometry of the cell and suggest that spontaneous protein waves could be a general means of intracellular organization. We hypothesize that cooperative membrane binding and unbinding, e.g., as an energy-dependent switch, may act as an important regulatory mechanism for protein oscillations and pattern formation in the cell."}],"date_created":"2018-12-11T11:55:04Z","publisher":"Annual Reviews","doi":"10.1146/annurev-biophys-042910-155332"},{"_id":"2072","issue":"1","file_date_updated":"2020-07-14T12:45:27Z","publication_status":"published","quality_controlled":"1","author":[{"orcid":"0000-0002-4579-8306","last_name":"Vicoso","full_name":"Vicoso, Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","first_name":"Beatriz"},{"first_name":"Doris","full_name":"Bachtrog, Doris","last_name":"Bachtrog"}],"status":"public","month":"02","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Oxford University Press","doi":"10.1093/gbe/evr010","title":"Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite","year":"2011","file":[{"file_size":212547,"date_created":"2019-05-10T07:41:28Z","file_name":"2011_GBE_Vicoso.pdf","file_id":"6395","date_updated":"2020-07-14T12:45:27Z","relation":"main_file","content_type":"application/pdf","checksum":"7855c134436e4f6a13d63b6606d7e8dd","creator":"dernst","access_level":"open_access"}],"page":"230 - 235","license":"https://creativecommons.org/licenses/by-nc/4.0/","extern":"1","day":"11","intvolume":"         3","has_accepted_license":"1","publication":"Genome Biology and Evolution","date_published":"2011-02-11T00:00:00Z","language":[{"iso":"eng"}],"volume":3,"ddc":["570"],"oa_version":"Published Version","date_updated":"2021-01-12T06:55:08Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"publist_id":"4966","citation":{"ama":"Vicoso B, Bachtrog D. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. <i>Genome Biology and Evolution</i>. 2011;3(1):230-235. doi:<a href=\"https://doi.org/10.1093/gbe/evr010\">10.1093/gbe/evr010</a>","short":"B. Vicoso, D. Bachtrog, Genome Biology and Evolution 3 (2011) 230–235.","ista":"Vicoso B, Bachtrog D. 2011. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 3(1), 230–235.","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” <i>Genome Biology and Evolution</i>, vol. 3, no. 1, Oxford University Press, 2011, pp. 230–35, doi:<a href=\"https://doi.org/10.1093/gbe/evr010\">10.1093/gbe/evr010</a>.","ieee":"B. Vicoso and D. Bachtrog, “Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite,” <i>Genome Biology and Evolution</i>, vol. 3, no. 1. Oxford University Press, pp. 230–235, 2011.","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” <i>Genome Biology and Evolution</i>. Oxford University Press, 2011. <a href=\"https://doi.org/10.1093/gbe/evr010\">https://doi.org/10.1093/gbe/evr010</a>.","apa":"Vicoso, B., &#38; Bachtrog, D. (2011). Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. <i>Genome Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/gbe/evr010\">https://doi.org/10.1093/gbe/evr010</a>"},"oa":1,"type":"journal_article","date_created":"2018-12-11T11:55:33Z","abstract":[{"lang":"eng","text":"Many species have morphologically and genetically differentiated sex chromosomes, such as the XY pair of mammals. Y chromosomes are often highly degenerated and carry few functional genes, so that XY males have only one copy of most Xlinked genes (whereas females have two). As a result, chromosome-wide mechanisms of dosage compensation, such as the mammalian X-inactivation, often evolve to reestablish expression balance. A similar phenomenon is expected in femaleheterogametic species, where ZW females should suffer from imbalances due to W-chromosome degeneration. However, no global dosage compensation mechanisms have been detected in the two independent ZW systems that have been studied systematically (birds and silkworm), leading to the suggestion that lack of global dosage compensation may be a general feature of female-heterogametic species. However, analyses of other independently evolved ZW systems are required to test if this is the case. In this study, we use published genomic and expression data to test for the presence of global dosage compensation in Schistosoma mansoni, a trematode parasite that causes schistosomiasis in humans. We find that Z-linked expression is reduced relative to autosomal expression in females but not males, consistent with incomplete or localized dosage compensation. This gives further support to the theory that female-heterogametic species may not require global mechanisms of dosage compensation."}]},{"publication":"Nature","quality_controlled":0,"publication_status":"published","intvolume":"       476","issue":"7361","day":"25","_id":"1973","month":"08","status":"public","volume":476,"author":[{"last_name":"Efremov","first_name":"Rouslan","full_name":"Efremov, Rouslan G"},{"full_name":"Leonid Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","first_name":"Leonid A","last_name":"Sazanov","orcid":"0000-0002-0977-7989"}],"date_published":"2011-08-25T00:00:00Z","doi":"10.1038/nature10330","publisher":"Nature Publishing Group","acknowledgement":"This work was funded by the Medical Research Council.","extern":1,"page":"414 - 421","date_created":"2018-12-11T11:54:59Z","abstract":[{"text":"Complex I is the first and largest enzyme of the respiratory chain, coupling electron transfer between NADH and ubiquinone to the translocation of four protons across the membrane. It has a central role in cellular energy production and has been implicated in many human neurodegenerative diseases. The L-shaped enzyme consists of hydrophilic and membrane domains. Previously, we determined the structure of the hydrophilic domain. Here we report the crystal structure of the Esherichia coli complex I membrane domain at 3.0 Ã. resolution. It includes six subunits, NuoL, NuoM, NuoN, NuoA, NuoJ and NuoK, with 55 transmembrane helices. The fold of the homologous antiporter-like subunits L, M and N is novel, with two inverted structural repeats of five transmembrane helices arranged, unusually, face-to-back. Each repeat includes a discontinuous transmembrane helix and forms half of a channel across the membrane. A network of conserved polar residues connects the two half-channels, completing the proton translocation pathway. Unexpectedly, lysines rather than carboxylate residues act as the main elements of the proton pump in these subunits. The fourth probable proton-translocation channel is at the interface of subunits N, K, J and A. The structure indicates that proton translocation in complex I, uniquely, involves coordinated conformational changes in six symmetrical structural elements.","lang":"eng"}],"year":"2011","type":"journal_article","title":"Structure of the membrane domain of respiratory complex i","citation":{"apa":"Efremov, R., &#38; Sazanov, L. A. (2011). Structure of the membrane domain of respiratory complex i. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature10330\">https://doi.org/10.1038/nature10330</a>","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “Structure of the Membrane Domain of Respiratory Complex I.” <i>Nature</i>. Nature Publishing Group, 2011. <a href=\"https://doi.org/10.1038/nature10330\">https://doi.org/10.1038/nature10330</a>.","ieee":"R. Efremov and L. A. Sazanov, “Structure of the membrane domain of respiratory complex i,” <i>Nature</i>, vol. 476, no. 7361. Nature Publishing Group, pp. 414–421, 2011.","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “Structure of the Membrane Domain of Respiratory Complex I.” <i>Nature</i>, vol. 476, no. 7361, Nature Publishing Group, 2011, pp. 414–21, doi:<a href=\"https://doi.org/10.1038/nature10330\">10.1038/nature10330</a>.","ama":"Efremov R, Sazanov LA. Structure of the membrane domain of respiratory complex i. <i>Nature</i>. 2011;476(7361):414-421. doi:<a href=\"https://doi.org/10.1038/nature10330\">10.1038/nature10330</a>","ista":"Efremov R, Sazanov LA. 2011. Structure of the membrane domain of respiratory complex i. Nature. 476(7361), 414–421.","short":"R. Efremov, L.A. Sazanov, Nature 476 (2011) 414–421."},"publist_id":"5110","date_updated":"2021-01-12T06:54:26Z"},{"volume":21,"month":"08","status":"public","author":[{"last_name":"Efremov","first_name":"Rouslan","full_name":"Efremov, Rouslan G"},{"orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","full_name":"Leonid Sazanov","first_name":"Leonid A","last_name":"Sazanov"}],"date_published":"2011-08-01T00:00:00Z","quality_controlled":0,"publication_status":"published","publication":"Current Opinion in Structural Biology","_id":"1974","intvolume":"        21","issue":"4","day":"01","page":"532 - 540","acknowledgement":"The work in authors’ laboratory was funded by the Medical Research Council.","extern":1,"publist_id":"5111","citation":{"apa":"Efremov, R., &#38; Sazanov, L. A. (2011). Respiratory complex I: “steam engine” of the cell? <i>Current Opinion in Structural Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.sbi.2011.07.002\">https://doi.org/10.1016/j.sbi.2011.07.002</a>","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “Respiratory Complex I: ‘steam Engine’ of the Cell?” <i>Current Opinion in Structural Biology</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.sbi.2011.07.002\">https://doi.org/10.1016/j.sbi.2011.07.002</a>.","ieee":"R. Efremov and L. A. Sazanov, “Respiratory complex I: ‘steam engine’ of the cell?,” <i>Current Opinion in Structural Biology</i>, vol. 21, no. 4. Elsevier, pp. 532–540, 2011.","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “Respiratory Complex I: ‘steam Engine’ of the Cell?” <i>Current Opinion in Structural Biology</i>, vol. 21, no. 4, Elsevier, 2011, pp. 532–40, doi:<a href=\"https://doi.org/10.1016/j.sbi.2011.07.002\">10.1016/j.sbi.2011.07.002</a>.","short":"R. Efremov, L.A. Sazanov, Current Opinion in Structural Biology 21 (2011) 532–540.","ista":"Efremov R, Sazanov LA. 2011. Respiratory complex I: ‘steam engine’ of the cell? Current Opinion in Structural Biology. 21(4), 532–540.","ama":"Efremov R, Sazanov LA. Respiratory complex I: “steam engine” of the cell? <i>Current Opinion in Structural Biology</i>. 2011;21(4):532-540. doi:<a href=\"https://doi.org/10.1016/j.sbi.2011.07.002\">10.1016/j.sbi.2011.07.002</a>"},"date_updated":"2021-01-12T06:54:27Z","date_created":"2018-12-11T11:54:59Z","abstract":[{"lang":"eng","text":"Complex I is the first enzyme of the respiratory chain and plays a central role in cellular energy production. It has been implicated in many human neurodegenerative diseases, as well as in ageing. One of the biggest membrane protein complexes, it is an L-shaped assembly consisting of hydrophilic and membrane domains. Previously, we have determined structures of the hydrophilic domain in several redox states. Last year was marked by fascinating breakthroughs in the understanding of the complete structure. We described the architecture of the membrane domain and of the entire bacterial complex I. X-ray analysis of the larger mitochondrial enzyme has also been published. The core subunits of the bacterial and mitochondrial enzymes have remarkably similar structures. The proposed mechanism of coupling between electron transfer and proton translocation involves long-range conformational changes, coordinated in part by a long α-helix, akin to the coupling rod of a steam engine."}],"type":"journal_article","title":"Respiratory complex I: 'steam engine' of the cell?","year":"2011","publisher":"Elsevier","doi":"10.1016/j.sbi.2011.07.002"},{"citation":{"apa":"Yip, C., Harbour, M., Jayawardena, K., Fearnley, I., &#38; Sazanov, L. A. (2011). Evolution of respiratory complex I &#38;quot;Supernumerary&#38;quot; subunits are present in the α-proteobacterial enzyme. <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology. <a href=\"https://doi.org/10.1074/jbc.M110.194993\">https://doi.org/10.1074/jbc.M110.194993</a>","chicago":"Yip, Chui, Michael Harbour, Kamburapola Jayawardena, Ian Fearnley, and Leonid A Sazanov. “Evolution of Respiratory Complex I &#38;quot;Supernumerary&#38;quot; Subunits Are Present in the α-Proteobacterial Enzyme.” <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology, 2011. <a href=\"https://doi.org/10.1074/jbc.M110.194993\">https://doi.org/10.1074/jbc.M110.194993</a>.","mla":"Yip, Chui, et al. “Evolution of Respiratory Complex I &#38;quot;Supernumerary&#38;quot; Subunits Are Present in the α-Proteobacterial Enzyme.” <i>Journal of Biological Chemistry</i>, vol. 286, no. 7, American Society for Biochemistry and Molecular Biology, 2011, pp. 5023–33, doi:<a href=\"https://doi.org/10.1074/jbc.M110.194993\">10.1074/jbc.M110.194993</a>.","ieee":"C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, and L. A. Sazanov, “Evolution of respiratory complex I &#38;quot;Supernumerary&#38;quot; subunits are present in the α-proteobacterial enzyme,” <i>Journal of Biological Chemistry</i>, vol. 286, no. 7. American Society for Biochemistry and Molecular Biology, pp. 5023–5033, 2011.","ama":"Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. Evolution of respiratory complex I &#38;quot;Supernumerary&#38;quot; subunits are present in the α-proteobacterial enzyme. <i>Journal of Biological Chemistry</i>. 2011;286(7):5023-5033. doi:<a href=\"https://doi.org/10.1074/jbc.M110.194993\">10.1074/jbc.M110.194993</a>","short":"C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, L.A. Sazanov, Journal of Biological Chemistry 286 (2011) 5023–5033.","ista":"Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. 2011. Evolution of respiratory complex I &#38;quot;Supernumerary&#38;quot; subunits are present in the α-proteobacterial enzyme. Journal of Biological Chemistry. 286(7), 5023–5033."},"publist_id":"5112","date_updated":"2021-01-12T06:54:27Z","date_created":"2018-12-11T11:55:00Z","abstract":[{"text":"Modern α-proteobacteria are thought to be closely related to the ancient symbiont of eukaryotes, an ancestor of mitochondria. Respiratory complex I from α-proteobacteria and mitochondria is well conserved at the level of the 14 &quot;core&quot; subunits, consistent with that notion. Mitochondrial complex I contains the core subunits, present in all species, and up to 31 &quot;supernumerary&quot; subunits, generally thought to have originated only within eukaryotic lineages. However, the full protein composition of an α-proteobacterial complex I has not been established previously. Here, we report the first purification and characterization of complex I from the α-proteobacterium Paracoccus denitrificans. Single particle electron microscopy shows that the complex has a well defined L-shape. Unexpectedly, in addition to the 14 core subunits, the enzyme also contains homologues of three supernumerary mitochondrial subunits as follows: B17.2, AQDQ/18, and 13 kDa (bovine nomenclature). This finding suggests that evolution of complex I via addition of supernumerary or &quot;accessory&quot; subunits started before the original endosymbiotic event that led to the creation of the eukaryotic cell. It also provides further confirmation that α-proteobacteria are the closest extant relatives of mitochondria.","lang":"eng"}],"type":"journal_article","year":"2011","title":"Evolution of respiratory complex I &quot;Supernumerary&quot; subunits are present in the α-proteobacterial enzyme","page":"5023 - 5033","acknowledgement":"This work was supported by the Medical Research Council. ","extern":1,"publisher":"American Society for Biochemistry and Molecular Biology","doi":"10.1074/jbc.M110.194993","author":[{"first_name":"Chui","full_name":"Yip, Chui Y","last_name":"Yip"},{"last_name":"Harbour","full_name":"Harbour, Michael E","first_name":"Michael"},{"full_name":"Jayawardena, Kamburapola G","first_name":"Kamburapola","last_name":"Jayawardena"},{"full_name":"Fearnley, Ian M","first_name":"Ian","last_name":"Fearnley"},{"orcid":"0000-0002-0977-7989","first_name":"Leonid A","full_name":"Leonid Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov"}],"date_published":"2011-02-18T00:00:00Z","volume":286,"month":"02","status":"public","_id":"1975","intvolume":"       286","day":"18","issue":"7","quality_controlled":0,"publication_status":"published","publication":"Journal of Biological Chemistry"},{"date_published":"2011-06-01T00:00:00Z","department":[{"_id":"HeEd"}],"language":[{"iso":"eng"}],"volume":6658,"day":"01","intvolume":"      6658","alternative_title":["LNCS"],"publication":"Graph-Based Representations in Pattern Recognition","type":"conference","editor":[{"last_name":"Jiang","first_name":"Xiaoyi","full_name":"Jiang, Xiaoyi"},{"first_name":"Miquel","full_name":"Ferrer, Miquel","last_name":"Ferrer"},{"full_name":"Torsello, Andrea","first_name":"Andrea","last_name":"Torsello"}],"abstract":[{"lang":"eng","text":"This paper presents a method to create a model of an articulated object using the planar motion in an initialization video. The model consists of rigid parts connected by points of articulation. The rigid parts are described by the positions of salient feature-points tracked throughout the video. Following a filtering step that identifies points that belong to different objects, rigid parts are found by a grouping process in a graph pyramid. Valid articulation points are selected by verifying multiple hypotheses for each pair of parts."}],"date_created":"2022-03-21T08:08:35Z","date_updated":"2024-10-09T21:02:32Z","citation":{"apa":"Artner, N. M., Ion, A., &#38; Kropatsch, W. G. (2011). Spatio-temporal extraction of articulated models in a graph pyramid. In X. Jiang, M. Ferrer, &#38; A. Torsello (Eds.), <i>Graph-Based Representations in Pattern Recognition</i> (Vol. 6658, pp. 215–224). Berlin, Heidelberg: Springer. <a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">https://doi.org/10.1007/978-3-642-20844-7_22</a>","chicago":"Artner, Nicole M., Adrian Ion, and Walter G. Kropatsch. “Spatio-Temporal Extraction of Articulated Models in a Graph Pyramid.” In <i>Graph-Based Representations in Pattern Recognition</i>, edited by Xiaoyi Jiang, Miquel Ferrer, and Andrea Torsello, 6658:215–24. LNIP. Berlin, Heidelberg: Springer, 2011. <a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">https://doi.org/10.1007/978-3-642-20844-7_22</a>.","ieee":"N. M. Artner, A. Ion, and W. G. Kropatsch, “Spatio-temporal extraction of articulated models in a graph pyramid,” in <i>Graph-Based Representations in Pattern Recognition</i>, Münster, Germany, 2011, vol. 6658, pp. 215–224.","mla":"Artner, Nicole M., et al. “Spatio-Temporal Extraction of Articulated Models in a Graph Pyramid.” <i>Graph-Based Representations in Pattern Recognition</i>, edited by Xiaoyi Jiang et al., vol. 6658, Springer, 2011, pp. 215–24, doi:<a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">10.1007/978-3-642-20844-7_22</a>.","ama":"Artner NM, Ion A, Kropatsch WG. Spatio-temporal extraction of articulated models in a graph pyramid. In: Jiang X, Ferrer M, Torsello A, eds. <i>Graph-Based Representations in Pattern Recognition</i>. Vol 6658. LNIP. Berlin, Heidelberg: Springer; 2011:215-224. doi:<a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">10.1007/978-3-642-20844-7_22</a>","short":"N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello (Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin, Heidelberg, 2011, pp. 215–224.","ista":"Artner NM, Ion A, Kropatsch WG. 2011. Spatio-temporal extraction of articulated models in a graph pyramid. Graph-Based Representations in Pattern Recognition. GbRPR: Graph-based Representations in Pattern RecognitionLNIP, LNCS, vol. 6658, 215–224."},"conference":{"start_date":"2011-05-18","location":"Münster, Germany","end_date":"2011-05-20","name":"GbRPR: Graph-based Representations in Pattern Recognition"},"acknowledgement":"This work has been partially supported by the Austrian Science Fund under grants S9103-N13 and P18716-N13.","article_processing_charge":"No","scopus_import":"1","series_title":"LNIP","oa_version":"None","publication_identifier":{"isbn":["9783642208430"],"eisbn":["9783642208447"],"eissn":["1611-3349"],"issn":["0302-9743"]},"place":"Berlin, Heidelberg","author":[{"last_name":"Artner","full_name":"Artner, Nicole M.","first_name":"Nicole M."},{"full_name":"Ion, Adrian","id":"29F89302-F248-11E8-B48F-1D18A9856A87","first_name":"Adrian","last_name":"Ion"},{"first_name":"Walter G.","full_name":"Kropatsch, Walter G.","last_name":"Kropatsch"}],"status":"public","month":"06","_id":"10907","publication_status":"published","quality_controlled":"1","year":"2011","corr_author":"1","title":"Spatio-temporal extraction of articulated models in a graph pyramid","page":"215-224","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","doi":"10.1007/978-3-642-20844-7_22","publisher":"Springer"},{"page":"27-37","extern":"1","title":"POM121 and Sun1 play a role in early steps of interphase NPC assembly","year":"2011","publisher":"Rockefeller University Press","doi":"10.1083/jcb.201012154","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"07","status":"public","main_file_link":[{"url":"https://doi.org/10.1083/jcb.201012154","open_access":"1"}],"author":[{"last_name":"Talamas","first_name":"Jessica A.","full_name":"Talamas, Jessica A."},{"orcid":"0000-0002-2111-992X","first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W","last_name":"HETZER"}],"publication_status":"published","quality_controlled":"1","_id":"11094","article_type":"original","issue":"1","article_processing_charge":"No","oa":1,"citation":{"ama":"Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. 2011;194(1):27-37. doi:<a href=\"https://doi.org/10.1083/jcb.201012154\">10.1083/jcb.201012154</a>","short":"J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.","ista":"Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.","mla":"Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>, vol. 194, no. 1, Rockefeller University Press, 2011, pp. 27–37, doi:<a href=\"https://doi.org/10.1083/jcb.201012154\">10.1083/jcb.201012154</a>.","ieee":"J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of interphase NPC assembly,” <i>Journal of Cell Biology</i>, vol. 194, no. 1. Rockefeller University Press, pp. 27–37, 2011.","apa":"Talamas, J. A., &#38; Hetzer, M. (2011). POM121 and Sun1 play a role in early steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.201012154\">https://doi.org/10.1083/jcb.201012154</a>","chicago":"Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2011. <a href=\"https://doi.org/10.1083/jcb.201012154\">https://doi.org/10.1083/jcb.201012154</a>."},"date_updated":"2024-10-14T11:26:10Z","abstract":[{"lang":"eng","text":"Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear envelope (NE) reformation and into an intact NE as cells progress through interphase. Although recent studies have shown that NPC formation occurs by two different molecular mechanisms at two distinct cell cycle stages, little is known about the molecular players that mediate the fusion of the outer and inner nuclear membranes to form pores. In this paper, we provide evidence that the transmembrane nucleoporin (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the INM and ONM. Additionally, Sun1, an INM protein that is known to interact with the cytoskeleton, was specifically required for interphase assembly and localized with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact transiently to promote early steps of interphase NPC assembly."}],"date_created":"2022-04-07T07:52:18Z","type":"journal_article","publication_identifier":{"issn":["0021-9525"],"eissn":["1540-8140"]},"scopus_import":"1","oa_version":"Published Version","pmid":1,"volume":194,"language":[{"iso":"eng"}],"date_published":"2011-07-04T00:00:00Z","keyword":["Cell Biology"],"external_id":{"pmid":["21727197"]},"publication":"Journal of Cell Biology","intvolume":"       194","day":"04"},{"language":[{"iso":"eng"}],"volume":23,"date_published":"2011-06-01T00:00:00Z","keyword":["Cell Biology"],"external_id":{"pmid":["21592757"]},"publication":"Current Opinion in Cell Biology","day":"01","intvolume":"        23","article_processing_charge":"No","date_updated":"2024-10-14T11:26:20Z","citation":{"apa":"Hetzer, M., &#38; Cavalli, G. (2011). Editorial overview. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">https://doi.org/10.1016/j.ceb.2011.04.013</a>","chicago":"Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">https://doi.org/10.1016/j.ceb.2011.04.013</a>.","ieee":"M. Hetzer and G. Cavalli, “Editorial overview,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.","mla":"Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:<a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">10.1016/j.ceb.2011.04.013</a>.","ama":"Hetzer M, Cavalli G. Editorial overview. <i>Current Opinion in Cell Biology</i>. 2011;23(3):255-257. doi:<a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">10.1016/j.ceb.2011.04.013</a>","short":"M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257.","ista":"Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology. 23(3), 255–257."},"type":"journal_article","date_created":"2022-04-07T07:52:27Z","publication_identifier":{"issn":["0955-0674"]},"scopus_import":"1","oa_version":"None","pmid":1,"status":"public","month":"06","author":[{"orcid":"0000-0002-2111-992X","last_name":"HETZER","first_name":"Martin W","full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"},{"last_name":"Cavalli","full_name":"Cavalli, Giacomo","first_name":"Giacomo"}],"publication_status":"published","quality_controlled":"1","_id":"11095","article_type":"letter_note","issue":"3","page":"255-257","extern":"1","title":"Editorial overview","year":"2011","publisher":"Elsevier","doi":"10.1016/j.ceb.2011.04.013","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"article_processing_charge":"No","type":"journal_article","date_created":"2022-04-07T07:52:37Z","abstract":[{"lang":"eng","text":"As the gatekeepers of the eukaryotic cell nucleus, nuclear pore complexes (NPCs) mediate all molecular trafficking between the nucleoplasm and the cytoplasm. In recent years, transport-independent functions of NPC components, nucleoporins, have been identified including roles in chromatin organization and gene regulation. Here, we summarize our current view of the NPC as a dynamic hub for the integration of chromatin regulation and nuclear trafficking and discuss the functional interplay between nucleoporins and the nuclear genome."}],"date_updated":"2024-10-14T11:26:31Z","citation":{"short":"Y. Liang, M. Hetzer, Current Opinion in Cell Biology 23 (2011) 65–70.","ista":"Liang Y, Hetzer M. 2011. Functional interactions between nucleoporins and chromatin. Current Opinion in Cell Biology. 23(1), 65–70.","ama":"Liang Y, Hetzer M. Functional interactions between nucleoporins and chromatin. <i>Current Opinion in Cell Biology</i>. 2011;23(1):65-70. doi:<a href=\"https://doi.org/10.1016/j.ceb.2010.09.008\">10.1016/j.ceb.2010.09.008</a>","mla":"Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins and Chromatin.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1, Elsevier, 2011, pp. 65–70, doi:<a href=\"https://doi.org/10.1016/j.ceb.2010.09.008\">10.1016/j.ceb.2010.09.008</a>.","ieee":"Y. Liang and M. Hetzer, “Functional interactions between nucleoporins and chromatin,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1. Elsevier, pp. 65–70, 2011.","chicago":"Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins and Chromatin.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.ceb.2010.09.008\">https://doi.org/10.1016/j.ceb.2010.09.008</a>.","apa":"Liang, Y., &#38; Hetzer, M. (2011). Functional interactions between nucleoporins and chromatin. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2010.09.008\">https://doi.org/10.1016/j.ceb.2010.09.008</a>"},"scopus_import":"1","oa_version":"None","publication_identifier":{"issn":["0955-0674"]},"pmid":1,"language":[{"iso":"eng"}],"volume":23,"date_published":"2011-02-01T00:00:00Z","keyword":["Cell Biology"],"publication":"Current Opinion in Cell Biology","external_id":{"pmid":["21030234"]},"day":"01","intvolume":"        23","extern":"1","page":"65-70","title":"Functional interactions between nucleoporins and chromatin","year":"2011","doi":"10.1016/j.ceb.2010.09.008","publisher":"Elsevier","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","month":"02","author":[{"last_name":"Liang","full_name":"Liang, Yun","first_name":"Yun"},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W","first_name":"Martin W","last_name":"HETZER","orcid":"0000-0002-2111-992X"}],"quality_controlled":"1","publication_status":"published","article_type":"original","issue":"1","_id":"11096"}]