---
_id: '8469'
abstract:
- lang: eng
text: The accurate experimental determination of dipolar-coupling constants for
one-bond heteronuclear dipolar couplings in solids is a key for the quantification
of the amplitudes of motional processes. Averaging of the dipolar coupling reports
on motions on time scales up to the inverse of the coupling constant, in our case
tens of microseconds. Combining dipolar-coupling derived order parameters that
characterize the amplitudes of the motion with relaxation data leads to a more
precise characterization of the dynamical parameters and helps to disentangle
the amplitudes and the time scales of the motional processes, which impact relaxation
rates in a highly correlated way. Here. we describe and characterize an improved
experimental protocol – based on REDOR – to measure these couplings in perdeuterated
proteins with a reduced sensitivity to experimental missettings. Because such
effects are presently the dominant source of systematic errors in experimental
dipolar-coupling measurements, these compensated experiments should help to significantly
improve the precision of such data. A detailed comparison with other commonly
used pulse sequences (T-MREV, phase-inverted CP,R18 5/2, and R18 7/1) is provided.
article_processing_charge: No
article_type: original
author:
- first_name: Paul
full_name: Schanda, Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
- first_name: Beat H.
full_name: Meier, Beat H.
last_name: Meier
- first_name: Matthias
full_name: Ernst, Matthias
last_name: Ernst
citation:
ama: Schanda P, Meier BH, Ernst M. Accurate measurement of one-bond H–X heteronuclear
dipolar couplings in MAS solid-state NMR. Journal of Magnetic Resonance.
2011;210(2):246-259. doi:10.1016/j.jmr.2011.03.015
apa: Schanda, P., Meier, B. H., & Ernst, M. (2011). Accurate measurement of
one-bond H–X heteronuclear dipolar couplings in MAS solid-state NMR. Journal
of Magnetic Resonance. Elsevier. https://doi.org/10.1016/j.jmr.2011.03.015
chicago: Schanda, Paul, Beat H. Meier, and Matthias Ernst. “Accurate Measurement
of One-Bond H–X Heteronuclear Dipolar Couplings in MAS Solid-State NMR.” Journal
of Magnetic Resonance. Elsevier, 2011. https://doi.org/10.1016/j.jmr.2011.03.015.
ieee: P. Schanda, B. H. Meier, and M. Ernst, “Accurate measurement of one-bond H–X
heteronuclear dipolar couplings in MAS solid-state NMR,” Journal of Magnetic
Resonance, vol. 210, no. 2. Elsevier, pp. 246–259, 2011.
ista: Schanda P, Meier BH, Ernst M. 2011. Accurate measurement of one-bond H–X heteronuclear
dipolar couplings in MAS solid-state NMR. Journal of Magnetic Resonance. 210(2),
246–259.
mla: Schanda, Paul, et al. “Accurate Measurement of One-Bond H–X Heteronuclear Dipolar
Couplings in MAS Solid-State NMR.” Journal of Magnetic Resonance, vol.
210, no. 2, Elsevier, 2011, pp. 246–59, doi:10.1016/j.jmr.2011.03.015.
short: P. Schanda, B.H. Meier, M. Ernst, Journal of Magnetic Resonance 210 (2011)
246–259.
date_created: 2020-09-18T10:10:50Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2021-01-12T08:19:29Z
day: '01'
doi: 10.1016/j.jmr.2011.03.015
extern: '1'
intvolume: ' 210'
issue: '2'
keyword:
- Nuclear and High Energy Physics
- Biophysics
- Biochemistry
- Condensed Matter Physics
language:
- iso: eng
month: '06'
oa_version: None
page: 246-259
publication: Journal of Magnetic Resonance
publication_identifier:
issn:
- 1090-7807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Accurate measurement of one-bond H–X heteronuclear dipolar couplings in MAS
solid-state NMR
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 210
year: '2011'
...
---
_id: '8470'
abstract:
- lang: eng
text: 'Adding a new dimension: 4D or 3D proton‐detected spectra of perdeuterated
protein samples with 1H labelled amides and methyl groups permit collecting unambiguous
distance restraints with high sensitivity and determining protein structure by
solid‐state NMR (see picture).'
article_processing_charge: No
article_type: original
author:
- first_name: Matthias
full_name: Huber, Matthias
last_name: Huber
- first_name: Sebastian
full_name: Hiller, Sebastian
last_name: Hiller
- first_name: Paul
full_name: Schanda, Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
- first_name: Matthias
full_name: Ernst, Matthias
last_name: Ernst
- first_name: Anja
full_name: Böckmann, Anja
last_name: Böckmann
- first_name: René
full_name: Verel, René
last_name: Verel
- first_name: Beat H.
full_name: Meier, Beat H.
last_name: Meier
citation:
ama: Huber M, Hiller S, Schanda P, et al. A proton-detected 4D solid-state NMR experiment
for protein structure determination. ChemPhysChem. 2011;12(5):915-918.
doi:10.1002/cphc.201100062
apa: Huber, M., Hiller, S., Schanda, P., Ernst, M., Böckmann, A., Verel, R., &
Meier, B. H. (2011). A proton-detected 4D solid-state NMR experiment for protein
structure determination. ChemPhysChem. Wiley. https://doi.org/10.1002/cphc.201100062
chicago: Huber, Matthias, Sebastian Hiller, Paul Schanda, Matthias Ernst, Anja Böckmann,
René Verel, and Beat H. Meier. “A Proton-Detected 4D Solid-State NMR Experiment
for Protein Structure Determination.” ChemPhysChem. Wiley, 2011. https://doi.org/10.1002/cphc.201100062.
ieee: M. Huber et al., “A proton-detected 4D solid-state NMR experiment for
protein structure determination,” ChemPhysChem, vol. 12, no. 5. Wiley,
pp. 915–918, 2011.
ista: Huber M, Hiller S, Schanda P, Ernst M, Böckmann A, Verel R, Meier BH. 2011.
A proton-detected 4D solid-state NMR experiment for protein structure determination.
ChemPhysChem. 12(5), 915–918.
mla: Huber, Matthias, et al. “A Proton-Detected 4D Solid-State NMR Experiment for
Protein Structure Determination.” ChemPhysChem, vol. 12, no. 5, Wiley,
2011, pp. 915–18, doi:10.1002/cphc.201100062.
short: M. Huber, S. Hiller, P. Schanda, M. Ernst, A. Böckmann, R. Verel, B.H. Meier,
ChemPhysChem 12 (2011) 915–918.
date_created: 2020-09-18T10:10:56Z
date_published: 2011-02-15T00:00:00Z
date_updated: 2021-01-12T08:19:30Z
day: '15'
doi: 10.1002/cphc.201100062
extern: '1'
intvolume: ' 12'
issue: '5'
keyword:
- Physical and Theoretical Chemistry
- Atomic and Molecular Physics
- and Optics
language:
- iso: eng
month: '02'
oa_version: None
page: 915-918
publication: ChemPhysChem
publication_identifier:
issn:
- 1439-4235
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: A proton-detected 4D solid-state NMR experiment for protein structure determination
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2011'
...
---
_id: '8471'
abstract:
- lang: eng
text: Despite the importance of protein fibrils in the context of conformational
diseases, information on their structure is still sparse. Hydrogen/deuterium exchange
measurements of backbone amide protons allow the identification hydrogen-bonding
patterns and reveal pertinent information on the amyloid β-sheet architecture.
However, they provide only little information on the identity of residues exposed
to solvent or buried inside the fibril core. NMR spectroscopy is a potent method
for identifying solvent-accessible residues in proteins via observation of polarization
transfer between chemically exchanging side-chain protons and water protons. We
show here that the combined use of highly deuterated samples and fast magic-angle
spinning greatly attenuates unwanted spin diffusion and allows identification
of polarization exchange with the solvent in a site-specific manner. We apply
this measurement protocol to HET-s(218–289) prion fibrils under different conditions
(including physiological pH, where protofibrils assemble together into thicker
fibrils) and demonstrate that each protofibril of HET-s(218–289), is surrounded
by water, thus excluding the existence of extended dry interfibril contacts. We
also show that exchangeable side-chain protons inside the hydrophobic core of
HET-s(218–289) do not exchange over time intervals of weeks to months. The experiments
proposed in this study can provide insight into the detailed structural features
of amyloid fibrils in general.
article_processing_charge: No
article_type: original
author:
- first_name: Hélène
full_name: Van Melckebeke, Hélène
last_name: Van Melckebeke
- first_name: Paul
full_name: Schanda, Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
- first_name: Julia
full_name: Gath, Julia
last_name: Gath
- first_name: Christian
full_name: Wasmer, Christian
last_name: Wasmer
- first_name: René
full_name: Verel, René
last_name: Verel
- first_name: Adam
full_name: Lange, Adam
last_name: Lange
- first_name: Beat H.
full_name: Meier, Beat H.
last_name: Meier
- first_name: Anja
full_name: Böckmann, Anja
last_name: Böckmann
citation:
ama: Van Melckebeke H, Schanda P, Gath J, et al. Probing water accessibility in
HET-s(218–289) amyloid fibrils by solid-state NMR. Journal of Molecular Biology.
2011;405(3):765-772. doi:10.1016/j.jmb.2010.11.004
apa: Van Melckebeke, H., Schanda, P., Gath, J., Wasmer, C., Verel, R., Lange, A.,
… Böckmann, A. (2011). Probing water accessibility in HET-s(218–289) amyloid fibrils
by solid-state NMR. Journal of Molecular Biology. Elsevier. https://doi.org/10.1016/j.jmb.2010.11.004
chicago: Van Melckebeke, Hélène, Paul Schanda, Julia Gath, Christian Wasmer, René
Verel, Adam Lange, Beat H. Meier, and Anja Böckmann. “Probing Water Accessibility
in HET-s(218–289) Amyloid Fibrils by Solid-State NMR.” Journal of Molecular
Biology. Elsevier, 2011. https://doi.org/10.1016/j.jmb.2010.11.004.
ieee: H. Van Melckebeke et al., “Probing water accessibility in HET-s(218–289)
amyloid fibrils by solid-state NMR,” Journal of Molecular Biology, vol.
405, no. 3. Elsevier, pp. 765–772, 2011.
ista: Van Melckebeke H, Schanda P, Gath J, Wasmer C, Verel R, Lange A, Meier BH,
Böckmann A. 2011. Probing water accessibility in HET-s(218–289) amyloid fibrils
by solid-state NMR. Journal of Molecular Biology. 405(3), 765–772.
mla: Van Melckebeke, Hélène, et al. “Probing Water Accessibility in HET-s(218–289)
Amyloid Fibrils by Solid-State NMR.” Journal of Molecular Biology, vol.
405, no. 3, Elsevier, 2011, pp. 765–72, doi:10.1016/j.jmb.2010.11.004.
short: H. Van Melckebeke, P. Schanda, J. Gath, C. Wasmer, R. Verel, A. Lange, B.H.
Meier, A. Böckmann, Journal of Molecular Biology 405 (2011) 765–772.
date_created: 2020-09-18T10:11:03Z
date_published: 2011-01-21T00:00:00Z
date_updated: 2021-01-12T08:19:30Z
day: '21'
doi: 10.1016/j.jmb.2010.11.004
extern: '1'
intvolume: ' 405'
issue: '3'
language:
- iso: eng
month: '01'
oa_version: None
page: 765-772
publication: Journal of Molecular Biology
publication_identifier:
issn:
- 0022-2836
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Probing water accessibility in HET-s(218–289) amyloid fibrils by solid-state
NMR
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 405
year: '2011'
...
---
_id: '8505'
abstract:
- lang: eng
text: The classical principle of least action says that orbits of mechanical systems
extremize action; an important subclass are those orbits that minimize action.
In this paper we utilize this principle along with Aubry-Mather theory to construct
(Birkhoff) regions of instability for a certain three-body problem, given by a
Hamiltonian system of 2 degrees of freedom. We believe that these methods can
be applied to construct instability regions for a variety of Hamiltonian systems
with 2 degrees of freedom. The Hamiltonian model we consider describes dynamics
of a Sun-Jupiter-comet system, and under some simplifying assumptions, we show
the existence of instabilities for the orbit of the comet. In particular, we show
that a comet which starts close to an orbit in the shape of an ellipse of eccentricity
e=0.66 can increase in eccentricity up to e=0.96. In the sequels to this paper,
we extend the result to beyond e=1 and show the existence of ejection orbits.
Such orbits are initially well within the range of our solar system. This might
give an indication of why most objects rotating around the Sun in our solar system
have relatively low eccentricity.
article_processing_charge: No
article_type: original
author:
- first_name: Joseph
full_name: Galante, Joseph
last_name: Galante
- first_name: Vadim
full_name: Kaloshin, Vadim
id: FE553552-CDE8-11E9-B324-C0EBE5697425
last_name: Kaloshin
orcid: 0000-0002-6051-2628
citation:
ama: Galante J, Kaloshin V. Destruction of invariant curves in the restricted circular
planar three-body problem by using comparison of action. Duke Mathematical
Journal. 2011;159(2):275-327. doi:10.1215/00127094-1415878
apa: Galante, J., & Kaloshin, V. (2011). Destruction of invariant curves in
the restricted circular planar three-body problem by using comparison of action.
Duke Mathematical Journal. Duke University Press. https://doi.org/10.1215/00127094-1415878
chicago: Galante, Joseph, and Vadim Kaloshin. “Destruction of Invariant Curves in
the Restricted Circular Planar Three-Body Problem by Using Comparison of Action.”
Duke Mathematical Journal. Duke University Press, 2011. https://doi.org/10.1215/00127094-1415878.
ieee: J. Galante and V. Kaloshin, “Destruction of invariant curves in the restricted
circular planar three-body problem by using comparison of action,” Duke Mathematical
Journal, vol. 159, no. 2. Duke University Press, pp. 275–327, 2011.
ista: Galante J, Kaloshin V. 2011. Destruction of invariant curves in the restricted
circular planar three-body problem by using comparison of action. Duke Mathematical
Journal. 159(2), 275–327.
mla: Galante, Joseph, and Vadim Kaloshin. “Destruction of Invariant Curves in the
Restricted Circular Planar Three-Body Problem by Using Comparison of Action.”
Duke Mathematical Journal, vol. 159, no. 2, Duke University Press, 2011,
pp. 275–327, doi:10.1215/00127094-1415878.
short: J. Galante, V. Kaloshin, Duke Mathematical Journal 159 (2011) 275–327.
date_created: 2020-09-18T10:47:41Z
date_published: 2011-08-04T00:00:00Z
date_updated: 2021-01-12T08:19:45Z
day: '04'
doi: 10.1215/00127094-1415878
extern: '1'
intvolume: ' 159'
issue: '2'
keyword:
- General Mathematics
language:
- iso: eng
month: '08'
oa_version: None
page: 275-327
publication: Duke Mathematical Journal
publication_identifier:
issn:
- 0012-7094
publication_status: published
publisher: Duke University Press
quality_controlled: '1'
status: public
title: Destruction of invariant curves in the restricted circular planar three-body
problem by using comparison of action
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 159
year: '2011'
...
---
_id: '881'
author:
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: 'Kondrashov F. Gene Dosage and Duplication. In: Evolution after Gene Duplication.
Wiley-Blackwell; 2011:57-76. doi:10.1002/9780470619902.ch4'
apa: Kondrashov, F. (2011). Gene Dosage and Duplication. In Evolution after Gene
Duplication (pp. 57–76). Wiley-Blackwell. https://doi.org/10.1002/9780470619902.ch4
chicago: Kondrashov, Fyodor. “Gene Dosage and Duplication.” In Evolution after
Gene Duplication, 57–76. Wiley-Blackwell, 2011. https://doi.org/10.1002/9780470619902.ch4.
ieee: F. Kondrashov, “Gene Dosage and Duplication,” in Evolution after Gene Duplication,
Wiley-Blackwell, 2011, pp. 57–76.
ista: 'Kondrashov F. 2011.Gene Dosage and Duplication. In: Evolution after Gene
Duplication. , 57–76.'
mla: Kondrashov, Fyodor. “Gene Dosage and Duplication.” Evolution after Gene
Duplication, Wiley-Blackwell, 2011, pp. 57–76, doi:10.1002/9780470619902.ch4.
short: F. Kondrashov, in:, Evolution after Gene Duplication, Wiley-Blackwell, 2011,
pp. 57–76.
date_created: 2018-12-11T11:49:00Z
date_published: 2011-03-14T00:00:00Z
date_updated: 2021-01-12T08:21:08Z
day: '14'
doi: 10.1002/9780470619902.ch4
extern: 1
month: '03'
page: 57 - 76
publication: Evolution after Gene Duplication
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6766'
quality_controlled: 0
status: public
title: Gene Dosage and Duplication
type: book_chapter
year: '2011'
...
---
_id: '890'
abstract:
- lang: eng
text: Recent discovery of the Large-billed Reed Warbler (Acrocephalus orinus) in
museums and in the wild significantly expanded our knowledge of its morphological
traits and genetic variability, and revealed new data on geographical distribution
of the breeding grounds, migration routes and wintering locations of this species.
It is now certain that A. orinus is breeding in Central Asia; however, the precise
area of distribution remains unclear. The difficulty in the further study of this
species lies in the small number of known specimens, with only 13 currently available
in museums, and in the relative uncertainty of the breeding area and habitat of
this species. Following morphological and genetic analyses from Svensson, et al,
we describe 14 new A. orinus specimens from collections of Zoological Museums
of the former USSR from the territory of Central Asian states. All of these specimens
were erroneously labeled as Blyth's Reed Warbler (A. dumetorum), which is thought
to be a breeding species in these areas. The 14 new A. orinus specimens were collected
during breeding season while most of the 85 A. dumetorum specimens from the same
area were collected during the migration period. Our data indicate that the Central
Asian territory previously attributed as breeding grounds of A. dumetorum is likely
to constitute the breeding territory of A. orinus. This rare case of a re-description
of the breeding territory of a lost species emphasizes the importance of maintenance
of museum collections around the world. If the present data on the breeding grounds
of A. orinus are confirmed with field observations and collections, the literature
on the biology of A. dumetorum from the southern part of its range may have to
be reconsidered.
acknowledgement: |
The work was supported by the Plan Nacional grant number BFU2009-09271 from the Spanish Ministry of Science and Innovation.
We extend our thanks to A.M. Peklo and I.V. Fadeev for granting us access to ornithological collections, to V.S. Shishkin, M.V. Kalyakin, R.D. Kashkarov, O.V. Belyalov and V.M. Loskot for valuable insights and to L. Svensson for extensive feedback on the manuscript. We thank E.I. Rogaev for access to ancient DNA facility.
author:
- first_name: Evgeniy
full_name: Koblik, Evgeniy A
last_name: Koblik
- first_name: Yaroslav
full_name: Red'Kin, Yaroslav A
last_name: Red'Kin
- first_name: Margarita
full_name: Meer, Margarita S
last_name: Meer
- first_name: Romain
full_name: Derelle, Romain
last_name: Derelle
- first_name: Sofia
full_name: Golenkina, Sofia A
last_name: Golenkina
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
- first_name: Vladimir
full_name: Arkhipov, Vladimir Y
last_name: Arkhipov
citation:
ama: 'Koblik E, Red’Kin Y, Meer M, et al. Acrocephalus orinus: A case of Mistaken
identity. PLoS One. 2011;6(4). doi:10.1371/journal.pone.0017716'
apa: 'Koblik, E., Red’Kin, Y., Meer, M., Derelle, R., Golenkina, S., Kondrashov,
F., & Arkhipov, V. (2011). Acrocephalus orinus: A case of Mistaken identity.
PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0017716'
chicago: 'Koblik, Evgeniy, Yaroslav Red’Kin, Margarita Meer, Romain Derelle, Sofia
Golenkina, Fyodor Kondrashov, and Vladimir Arkhipov. “Acrocephalus Orinus: A Case
of Mistaken Identity.” PLoS One. Public Library of Science, 2011. https://doi.org/10.1371/journal.pone.0017716.'
ieee: 'E. Koblik et al., “Acrocephalus orinus: A case of Mistaken identity,”
PLoS One, vol. 6, no. 4. Public Library of Science, 2011.'
ista: 'Koblik E, Red’Kin Y, Meer M, Derelle R, Golenkina S, Kondrashov F, Arkhipov
V. 2011. Acrocephalus orinus: A case of Mistaken identity. PLoS One. 6(4).'
mla: 'Koblik, Evgeniy, et al. “Acrocephalus Orinus: A Case of Mistaken Identity.”
PLoS One, vol. 6, no. 4, Public Library of Science, 2011, doi:10.1371/journal.pone.0017716.'
short: E. Koblik, Y. Red’Kin, M. Meer, R. Derelle, S. Golenkina, F. Kondrashov,
V. Arkhipov, PLoS One 6 (2011).
date_created: 2018-12-11T11:49:02Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T08:21:18Z
day: '01'
doi: 10.1371/journal.pone.0017716
extern: 1
intvolume: ' 6'
issue: '4'
month: '01'
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '6760'
quality_controlled: 0
status: public
title: 'Acrocephalus orinus: A case of Mistaken identity'
type: journal_article
volume: 6
year: '2011'
...
---
_id: '90'
abstract:
- lang: eng
text: A popular method for generating micron-sized aerosols is to submerge ultrasonic
(ω ∼ MHz) piezoelectric oscillators in a water bath. The submerged oscillator
atomizes the fluid, creating droplets with radii proportional to the wavelength
of the standing wave at the fluid surface. Classical theory for the Faraday instability
predicts a parametric instability driving a capillary wave at the subharmonic
(ω / 2) frequency. For many applications it is desirable to reduce the size of
the droplets; however, using higher frequency oscillators becomes impractical
beyond a few MHz. Observations are presented that demonstrate that smaller droplets
may also be created by increasing the driving amplitude of the oscillator, and
that this effect becomes more pronounced for large driving frequencies. It is
shown that these observations are consistent with a transition from droplets associated
with subharmonic (ω/2) capillary waves to harmonic (ω) capillary waves induced
by larger driving frequencies and amplitudes, as predicted by a stability analysis
of the capillary waves.
author:
- first_name: Andrew P
full_name: Higginbotham, Andrew P
id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
last_name: Higginbotham
orcid: 0000-0003-2607-2363
- first_name: A
full_name: Guillen, A
last_name: Guillen
- first_name: Nick
full_name: Jones, Nick
last_name: Jones
- first_name: Tom
full_name: Donnelly, Tom
last_name: Donnelly
- first_name: Andrew
full_name: Bernoff, Andrew
last_name: Bernoff
citation:
ama: Higginbotham AP, Guillen A, Jones N, Donnelly T, Bernoff A. Evidence of the
harmonic Faraday instability in ultrasonic atomization experiments with a deep,
inviscid fluid. Journal of the Acoustical Society of America. 2011;130(5):2694-2699.
doi:10.1121/1.3643816
apa: Higginbotham, A. P., Guillen, A., Jones, N., Donnelly, T., & Bernoff, A.
(2011). Evidence of the harmonic Faraday instability in ultrasonic atomization
experiments with a deep, inviscid fluid. Journal of the Acoustical Society
of America. Acoustical Society of America. https://doi.org/10.1121/1.3643816
chicago: Higginbotham, Andrew P, A Guillen, Nick Jones, Tom Donnelly, and Andrew
Bernoff. “Evidence of the Harmonic Faraday Instability in Ultrasonic Atomization
Experiments with a Deep, Inviscid Fluid.” Journal of the Acoustical Society
of America. Acoustical Society of America, 2011. https://doi.org/10.1121/1.3643816.
ieee: A. P. Higginbotham, A. Guillen, N. Jones, T. Donnelly, and A. Bernoff, “Evidence
of the harmonic Faraday instability in ultrasonic atomization experiments with
a deep, inviscid fluid,” Journal of the Acoustical Society of America,
vol. 130, no. 5. Acoustical Society of America, pp. 2694–2699, 2011.
ista: Higginbotham AP, Guillen A, Jones N, Donnelly T, Bernoff A. 2011. Evidence
of the harmonic Faraday instability in ultrasonic atomization experiments with
a deep, inviscid fluid. Journal of the Acoustical Society of America. 130(5),
2694–2699.
mla: Higginbotham, Andrew P., et al. “Evidence of the Harmonic Faraday Instability
in Ultrasonic Atomization Experiments with a Deep, Inviscid Fluid.” Journal
of the Acoustical Society of America, vol. 130, no. 5, Acoustical Society
of America, 2011, pp. 2694–99, doi:10.1121/1.3643816.
short: A.P. Higginbotham, A. Guillen, N. Jones, T. Donnelly, A. Bernoff, Journal
of the Acoustical Society of America 130 (2011) 2694–2699.
date_created: 2018-12-11T11:44:34Z
date_published: 2011-11-16T00:00:00Z
date_updated: 2021-01-12T08:21:44Z
day: '16'
doi: 10.1121/1.3643816
extern: '1'
external_id:
pmid:
- ' 22087897'
intvolume: ' 130'
issue: '5'
language:
- iso: eng
month: '11'
oa_version: None
page: 2694 - 2699
pmid: 1
publication: Journal of the Acoustical Society of America
publication_status: published
publisher: Acoustical Society of America
publist_id: '7964'
quality_controlled: '1'
status: public
title: Evidence of the harmonic Faraday instability in ultrasonic atomization experiments
with a deep, inviscid fluid
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 130
year: '2011'
...
---
_id: '9143'
abstract:
- lang: eng
text: Understanding and predicting the response of the hydrological cycle to climate
change is a major challenge with important societal implications. Much progress
has been made in understanding the response of global average precipitation by
considering the energy balances of the atmosphere and the surface1,2,3,4,5,6.
This energetic perspective reveals that changes in temperature, greenhouse gases,
aerosols, solar forcing and cloud feedbacks can all affect the global average
rate of precipitation5,7,8,9,10,11. Local precipitation changes have conventionally
been analysed using the water vapour budget, but here we show that the energetic
approach can be extended to local changes in precipitation by including changes
in horizontal energy transport. In simulations of twenty-first century climate
change, this energy transport accounts for much of the spatial variability in
precipitation change. We show that changes in radiative and surface sensible heat
fluxes are a guide to the local precipitation response over land and at large
scales, but not at small scales over the ocean, where cloud and water vapour radiative
feedbacks dampen the response. The energetic approach described here helps bridge
the gap between our understanding of global and regional precipitation changes.
It could be applied to better understand the response of regional precipitation
to different radiative forcings, including geo-engineering schemes, as well as
to understand the differences between the fast and slow responses of regional
precipitation to such forcings.
article_processing_charge: No
article_type: original
author:
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: P. A.
full_name: O’Gorman, P. A.
last_name: O’Gorman
citation:
ama: Muller CJ, O’Gorman PA. An energetic perspective on the regional response of
precipitation to climate change. Nature Climate Change. 2011;1(5):266-271.
doi:10.1038/nclimate1169
apa: Muller, C. J., & O’Gorman, P. A. (2011). An energetic perspective on the
regional response of precipitation to climate change. Nature Climate Change.
Springer Nature. https://doi.org/10.1038/nclimate1169
chicago: Muller, Caroline J, and P. A. O’Gorman. “An Energetic Perspective on the
Regional Response of Precipitation to Climate Change.” Nature Climate Change.
Springer Nature, 2011. https://doi.org/10.1038/nclimate1169.
ieee: C. J. Muller and P. A. O’Gorman, “An energetic perspective on the regional
response of precipitation to climate change,” Nature Climate Change, vol.
1, no. 5. Springer Nature, pp. 266–271, 2011.
ista: Muller CJ, O’Gorman PA. 2011. An energetic perspective on the regional response
of precipitation to climate change. Nature Climate Change. 1(5), 266–271.
mla: Muller, Caroline J., and P. A. O’Gorman. “An Energetic Perspective on the Regional
Response of Precipitation to Climate Change.” Nature Climate Change, vol.
1, no. 5, Springer Nature, 2011, pp. 266–71, doi:10.1038/nclimate1169.
short: C.J. Muller, P.A. O’Gorman, Nature Climate Change 1 (2011) 266–271.
date_created: 2021-02-15T14:39:29Z
date_published: 2011-07-24T00:00:00Z
date_updated: 2022-01-24T13:52:11Z
day: '24'
doi: 10.1038/nclimate1169
extern: '1'
intvolume: ' 1'
issue: '5'
language:
- iso: eng
month: '07'
oa_version: None
page: 266-271
publication: Nature Climate Change
publication_identifier:
issn:
- 1758-678X
- 1758-6798
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: An energetic perspective on the regional response of precipitation to climate
change
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 1
year: '2011'
...
---
_id: '9144'
abstract:
- lang: eng
text: "A cloud-resolving model is used to investigate the effect of warming on high
percentiles of precipitation (precipitation extremes) in the idealized setting
of radiative-convective equilibrium. While this idealized setting does not allow
for several factors that influence precipitation in the tropics, it does allow
for an evaluation of the response of precipitation extremes to warming in simulations
with resolved rather than parameterized convection. The methodology developed
should also be applicable to less idealized simulations.\r\n\r\nModeled precipitation
extremes are found to increase in magnitude in response to an increase in sea
surface temperature. A dry static energy budget is used to relate the changes
in precipitation extremes to changes in atmospheric temperature, vertical velocity,
and precipitation efficiency. To first order, the changes in precipitation extremes
are captured by changes in the mean temperature structure of the atmosphere. Changes
in vertical velocities play a secondary role and tend to weaken the strength of
precipitation extremes, despite an intensification of updraft velocities in the
upper troposphere. The influence of changes in condensate transports on precipitation
extremes is quantified in terms of a precipitation efficiency; it does not change
greatly with warming.\r\n\r\nTropical precipitation extremes have previously been
found to increase at a greater fractional rate than the amount of atmospheric
water vapor in observations of present-day variability and in some climate model
simulations with parameterized convection. But the fractional increases in precipitation
extremes in the cloud-resolving simulations are comparable in magnitude to those
in surface water vapor concentrations (owing to a partial cancellation between
dynamical and thermodynamical changes), and are substantially less than the fractional
increases in column water vapor."
article_processing_charge: No
article_type: original
author:
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: Paul A.
full_name: O’Gorman, Paul A.
last_name: O’Gorman
- first_name: Larissa E.
full_name: Back, Larissa E.
last_name: Back
citation:
ama: Muller CJ, O’Gorman PA, Back LE. Intensification of precipitation extremes
with warming in a cloud-resolving model. Journal of Climate. 2011;24(11):2784-2800.
doi:10.1175/2011jcli3876.1
apa: Muller, C. J., O’Gorman, P. A., & Back, L. E. (2011). Intensification of
precipitation extremes with warming in a cloud-resolving model. Journal of
Climate. American Meteorological Society. https://doi.org/10.1175/2011jcli3876.1
chicago: Muller, Caroline J, Paul A. O’Gorman, and Larissa E. Back. “Intensification
of Precipitation Extremes with Warming in a Cloud-Resolving Model.” Journal
of Climate. American Meteorological Society, 2011. https://doi.org/10.1175/2011jcli3876.1.
ieee: C. J. Muller, P. A. O’Gorman, and L. E. Back, “Intensification of precipitation
extremes with warming in a cloud-resolving model,” Journal of Climate,
vol. 24, no. 11. American Meteorological Society, pp. 2784–2800, 2011.
ista: Muller CJ, O’Gorman PA, Back LE. 2011. Intensification of precipitation extremes
with warming in a cloud-resolving model. Journal of Climate. 24(11), 2784–2800.
mla: Muller, Caroline J., et al. “Intensification of Precipitation Extremes with
Warming in a Cloud-Resolving Model.” Journal of Climate, vol. 24, no. 11,
American Meteorological Society, 2011, pp. 2784–800, doi:10.1175/2011jcli3876.1.
short: C.J. Muller, P.A. O’Gorman, L.E. Back, Journal of Climate 24 (2011) 2784–2800.
date_created: 2021-02-15T14:39:57Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2022-01-24T13:52:46Z
day: '01'
doi: 10.1175/2011jcli3876.1
extern: '1'
intvolume: ' 24'
issue: '11'
keyword:
- Atmospheric Science
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1175/2011JCLI3876.1
month: '06'
oa: 1
oa_version: Published Version
page: 2784-2800
publication: Journal of Climate
publication_identifier:
eissn:
- 1520-0442
issn:
- 0894-8755
publication_status: published
publisher: American Meteorological Society
quality_controlled: '1'
status: public
title: Intensification of precipitation extremes with warming in a cloud-resolving
model
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 24
year: '2011'
...
---
_id: '918'
abstract:
- lang: eng
text: We study theoretically the shapes of a dividing epithelial monolayer of cells
lying on top of an elastic stroma. The negative tension created by cell division
provokes a buckling instability at a finite wave vector leading to the formation
of periodic arrays of villi and crypts. The instability is similar to the buckling
of a metallic plate under compression. We use the results to rationalize the various
structures of the intestinal lining observed in vivo. Taking into account the
coupling between cell division and local curvature, we obtain different patterns
of villi and crypts, which could explain the different morphologies of the small
intestine and the colon.
acknowledgement: We thank S. Fre and M. Huygue for discussion and for showing us in
vivo samples and A. Bergès for help with the manuscript.
article_processing_charge: No
author:
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Jacques
full_name: Prost, Jacques
last_name: Prost
- first_name: Jean
full_name: Joanny, Jean
last_name: Joanny
citation:
ama: Hannezo EB, Prost J, Joanny J. Instabilities of monolayered epithelia Shape
and structure of villi and crypts. Physical Review Letters. 2011;107(7).
doi:10.1103/PhysRevLett.107.078104
apa: Hannezo, E. B., Prost, J., & Joanny, J. (2011). Instabilities of monolayered
epithelia Shape and structure of villi and crypts. Physical Review Letters.
American Physical Society. https://doi.org/10.1103/PhysRevLett.107.078104
chicago: Hannezo, Edouard B, Jacques Prost, and Jean Joanny. “Instabilities of Monolayered
Epithelia Shape and Structure of Villi and Crypts.” Physical Review Letters.
American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.107.078104.
ieee: E. B. Hannezo, J. Prost, and J. Joanny, “Instabilities of monolayered epithelia
Shape and structure of villi and crypts,” Physical Review Letters, vol.
107, no. 7. American Physical Society, 2011.
ista: Hannezo EB, Prost J, Joanny J. 2011. Instabilities of monolayered epithelia
Shape and structure of villi and crypts. Physical Review Letters. 107(7).
mla: Hannezo, Edouard B., et al. “Instabilities of Monolayered Epithelia Shape and
Structure of Villi and Crypts.” Physical Review Letters, vol. 107, no.
7, American Physical Society, 2011, doi:10.1103/PhysRevLett.107.078104.
short: E.B. Hannezo, J. Prost, J. Joanny, Physical Review Letters 107 (2011).
date_created: 2018-12-11T11:49:11Z
date_published: 2011-08-11T00:00:00Z
date_updated: 2021-01-12T08:21:54Z
day: '11'
doi: 10.1103/PhysRevLett.107.078104
extern: '1'
intvolume: ' 107'
issue: '7'
language:
- iso: eng
month: '08'
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6521'
status: public
title: Instabilities of monolayered epithelia Shape and structure of villi and crypts
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2011'
...
---
_id: '919'
abstract:
- lang: eng
text: Collective cell migration in tissues occurs throughout embryonic development,
during wound healing, and in cancerous tumor invasion, yet most detailed knowledge
of cell migration comes from single-cell studies. As single cells migrate, the
shape of the cell body fluctuates dramatically through cyclic processes of extension,
adhesion, and retraction, accompanied by erratic changes in migration direction.
Within confluent cell layers, such subcellular motions must be coupled between
neighbors, yet the influence of these subcellular motions on collective migration
is not known. Here we study motion within a confluent epithelial cell sheet, simultaneously
measuring collective migration and subcellular motions, covering a broad range
of length scales, time scales, and cell densities. At large length scales and
time scales collective migration slows as cell density rises, yet the fastest
cells move in large, multicell groups whose scale grows with increasing cell density.
This behavior has an intriguing analogy to dynamic heterogeneities found in particulate
systems as they become more crowded and approach a glass transition. In addition
we find a diminishing self-diffusivity of short-wavelength motions within the
cell layer, and growing peaks in the vibrational density of states associated
with cooperative cell-shape fluctuations. Both of these observations are also
intriguingly reminiscent of a glass transition. Thus, these results provide a
broad and suggestive analogy between cell motion within a confluent layer and
the dynamics of supercooled colloidal and molecular fluids approaching a glass
transition.
author:
- first_name: Thomas
full_name: Angelini, Thomas
last_name: Angelini
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Xavier
full_name: Trepatc, Xavier
last_name: Trepatc
- first_name: Manuel
full_name: Marquez, Manuel
last_name: Marquez
- first_name: Jeffrey
full_name: Fredberg, Jeffrey
last_name: Fredberg
- first_name: David
full_name: Weitz, David
last_name: Weitz
citation:
ama: Angelini T, Hannezo EB, Trepatc X, Marquez M, Fredberg J, Weitz D. Glass-like
dynamics of collective cell migration. Proceedings of the National Academy
of Sciences of the United States of America. 2011;108(12):4714-4719. doi:10.1073/pnas.1010059108
apa: Angelini, T., Hannezo, E. B., Trepatc, X., Marquez, M., Fredberg, J., &
Weitz, D. (2011). Glass-like dynamics of collective cell migration. Proceedings
of the National Academy of Sciences of the United States of America. PNAS.
https://doi.org/10.1073/pnas.1010059108
chicago: Angelini, Thomas, Edouard B Hannezo, Xavier Trepatc, Manuel Marquez, Jeffrey
Fredberg, and David Weitz. “Glass-like Dynamics of Collective Cell Migration.”
Proceedings of the National Academy of Sciences of the United States of America.
PNAS, 2011. https://doi.org/10.1073/pnas.1010059108.
ieee: T. Angelini, E. B. Hannezo, X. Trepatc, M. Marquez, J. Fredberg, and D. Weitz,
“Glass-like dynamics of collective cell migration,” Proceedings of the National
Academy of Sciences of the United States of America, vol. 108, no. 12. PNAS,
pp. 4714–4719, 2011.
ista: Angelini T, Hannezo EB, Trepatc X, Marquez M, Fredberg J, Weitz D. 2011. Glass-like
dynamics of collective cell migration. Proceedings of the National Academy of
Sciences of the United States of America. 108(12), 4714–4719.
mla: Angelini, Thomas, et al. “Glass-like Dynamics of Collective Cell Migration.”
Proceedings of the National Academy of Sciences of the United States of America,
vol. 108, no. 12, PNAS, 2011, pp. 4714–19, doi:10.1073/pnas.1010059108.
short: T. Angelini, E.B. Hannezo, X. Trepatc, M. Marquez, J. Fredberg, D. Weitz,
Proceedings of the National Academy of Sciences of the United States of America
108 (2011) 4714–4719.
date_created: 2018-12-11T11:49:12Z
date_published: 2011-03-22T00:00:00Z
date_updated: 2021-01-12T08:21:54Z
day: '22'
doi: 10.1073/pnas.1010059108
extern: '1'
intvolume: ' 108'
issue: '12'
language:
- iso: eng
month: '03'
oa_version: None
page: 4714 - 4719
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_status: published
publisher: PNAS
publist_id: '6522'
quality_controlled: '1'
status: public
title: Glass-like dynamics of collective cell migration
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2011'
...
---
_id: '923'
abstract:
- lang: eng
text: The conserved role of Notch signaling in controlling intestinal cell fate
specification and homeostasis has been extensively studied. Nevertheless, the
precise identity of the cells in which Notch signaling is active and the role
of different Notch receptor paralogues in the intestine remain ambiguous, due
to the lack of reliable tools to investigate Notch expression and function in
vivo. We generated a new series of transgenic mice that allowed us, by lineage
analysis, to formally prove that Notch1 and Notch2 are specifically expressed
in crypt stem cells. In addition, a novel Notch reporter mouse, Hes1-EmGFP SAT,
demonstrated exclusive Notch activity in crypt stem cells and absorptive progenitors.
This roster of knock-in and reporter mice represents a valuable resource to functionally
explore the Notch pathway in vivo in virtually all tissues.
article_number: e25785
author:
- first_name: Silvia
full_name: Fré, Silvia
last_name: Fré
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Sanja
full_name: Šale, Sanja
last_name: Šale
- first_name: Mathilde
full_name: Huyghe, Mathilde
last_name: Huyghe
- first_name: Daniel
full_name: Lafkas, Daniel
last_name: Lafkas
- first_name: Holger
full_name: Kissel, Holger
last_name: Kissel
- first_name: Angeliki
full_name: Louvi, Angeliki
last_name: Louvi
- first_name: Jeffrey
full_name: Greve, Jeffrey
last_name: Greve
- first_name: Daniel
full_name: Louvard, Daniel
last_name: Louvard
- first_name: Spyros
full_name: Artavanis Tsakonas, Spyros
last_name: Artavanis Tsakonas
citation:
ama: Fré S, Hannezo EB, Šale S, et al. Notch lineages and activity in intestinal
stem cells determined by a new set of knock in mice. PLoS One. 2011;6(10).
doi:10.1371/journal.pone.0025785
apa: Fré, S., Hannezo, E. B., Šale, S., Huyghe, M., Lafkas, D., Kissel, H., … Artavanis
Tsakonas, S. (2011). Notch lineages and activity in intestinal stem cells determined
by a new set of knock in mice. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0025785
chicago: Fré, Silvia, Edouard B Hannezo, Sanja Šale, Mathilde Huyghe, Daniel Lafkas,
Holger Kissel, Angeliki Louvi, Jeffrey Greve, Daniel Louvard, and Spyros Artavanis
Tsakonas. “Notch Lineages and Activity in Intestinal Stem Cells Determined by
a New Set of Knock in Mice.” PLoS One. Public Library of Science, 2011.
https://doi.org/10.1371/journal.pone.0025785.
ieee: S. Fré et al., “Notch lineages and activity in intestinal stem cells
determined by a new set of knock in mice,” PLoS One, vol. 6, no. 10. Public
Library of Science, 2011.
ista: Fré S, Hannezo EB, Šale S, Huyghe M, Lafkas D, Kissel H, Louvi A, Greve J,
Louvard D, Artavanis Tsakonas S. 2011. Notch lineages and activity in intestinal
stem cells determined by a new set of knock in mice. PLoS One. 6(10), e25785.
mla: Fré, Silvia, et al. “Notch Lineages and Activity in Intestinal Stem Cells Determined
by a New Set of Knock in Mice.” PLoS One, vol. 6, no. 10, e25785, Public
Library of Science, 2011, doi:10.1371/journal.pone.0025785.
short: S. Fré, E.B. Hannezo, S. Šale, M. Huyghe, D. Lafkas, H. Kissel, A. Louvi,
J. Greve, D. Louvard, S. Artavanis Tsakonas, PLoS One 6 (2011).
date_created: 2018-12-11T11:49:13Z
date_published: 2011-10-03T00:00:00Z
date_updated: 2021-01-12T08:21:56Z
day: '03'
ddc:
- '570'
doi: 10.1371/journal.pone.0025785
extern: '1'
file:
- access_level: open_access
checksum: b4e864125dfcb9fa57a9e01688838081
content_type: application/pdf
creator: dernst
date_created: 2019-05-10T11:20:26Z
date_updated: 2020-07-14T12:48:15Z
file_id: '6401'
file_name: 2011_PLOS1_Fre.PDF
file_size: 2860615
relation: main_file
file_date_updated: 2020-07-14T12:48:15Z
has_accepted_license: '1'
intvolume: ' 6'
issue: '10'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '10'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '6520'
quality_controlled: '1'
status: public
title: Notch lineages and activity in intestinal stem cells determined by a new set
of knock in mice
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2011'
...
---
_id: '9483'
abstract:
- lang: eng
text: Imprinted genes are expressed primarily or exclusively from either the maternal
or paternal allele, a phenomenon that occurs in flowering plants and mammals.
Flowering plant imprinted gene expression has been described primarily in endosperm,
a terminal nutritive tissue consumed by the embryo during seed development or
after germination. Imprinted expression in Arabidopsis thaliana endosperm is orchestrated
by differences in cytosine DNA methylation between the paternal and maternal genomes
as well as by Polycomb group proteins. Currently, only 11 imprinted A. thaliana
genes are known. Here, we use extensive sequencing of cDNA libraries to identify
9 paternally expressed and 34 maternally expressed imprinted genes in A. thaliana
endosperm that are regulated by the DNA-demethylating glycosylase DEMETER, the
DNA methyltransferase MET1, and/or the core Polycomb group protein FIE. These
genes encode transcription factors, proteins involved in hormone signaling, components
of the ubiquitin protein degradation pathway, regulators of histone and DNA methylation,
and small RNA pathway proteins. We also identify maternally expressed genes that
may be regulated by unknown mechanisms or deposited from maternal tissues. We
did not detect any imprinted genes in the embryo. Our results show that imprinted
gene expression is an extensive mechanistically complex phenomenon that likely
affects multiple aspects of seed development.
article_processing_charge: No
article_type: original
author:
- first_name: Tzung-Fu
full_name: Hsieh, Tzung-Fu
last_name: Hsieh
- first_name: Juhyun
full_name: Shin, Juhyun
last_name: Shin
- first_name: Rie
full_name: Uzawa, Rie
last_name: Uzawa
- first_name: Pedro
full_name: Silva, Pedro
last_name: Silva
- first_name: Stephanie
full_name: Cohen, Stephanie
last_name: Cohen
- first_name: Matthew J.
full_name: Bauer, Matthew J.
last_name: Bauer
- first_name: Meryl
full_name: Hashimoto, Meryl
last_name: Hashimoto
- first_name: Ryan C.
full_name: Kirkbride, Ryan C.
last_name: Kirkbride
- first_name: John J.
full_name: Harada, John J.
last_name: Harada
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Robert L.
full_name: Fischer, Robert L.
last_name: Fischer
citation:
ama: Hsieh T-F, Shin J, Uzawa R, et al. Regulation of imprinted gene expression
in Arabidopsis endosperm. Proceedings of the National Academy of Sciences.
2011;108(5):1755-1762. doi:10.1073/pnas.1019273108
apa: Hsieh, T.-F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M. J., … Fischer,
R. L. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm.
Proceedings of the National Academy of Sciences. National Academy of Sciences.
https://doi.org/10.1073/pnas.1019273108
chicago: Hsieh, Tzung-Fu, Juhyun Shin, Rie Uzawa, Pedro Silva, Stephanie Cohen,
Matthew J. Bauer, Meryl Hashimoto, et al. “Regulation of Imprinted Gene Expression
in Arabidopsis Endosperm.” Proceedings of the National Academy of Sciences.
National Academy of Sciences, 2011. https://doi.org/10.1073/pnas.1019273108.
ieee: T.-F. Hsieh et al., “Regulation of imprinted gene expression in Arabidopsis
endosperm,” Proceedings of the National Academy of Sciences, vol. 108,
no. 5. National Academy of Sciences, pp. 1755–1762, 2011.
ista: Hsieh T-F, Shin J, Uzawa R, Silva P, Cohen S, Bauer MJ, Hashimoto M, Kirkbride
RC, Harada JJ, Zilberman D, Fischer RL. 2011. Regulation of imprinted gene expression
in Arabidopsis endosperm. Proceedings of the National Academy of Sciences. 108(5),
1755–1762.
mla: Hsieh, Tzung-Fu, et al. “Regulation of Imprinted Gene Expression in Arabidopsis
Endosperm.” Proceedings of the National Academy of Sciences, vol. 108,
no. 5, National Academy of Sciences, 2011, pp. 1755–62, doi:10.1073/pnas.1019273108.
short: T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto,
R.C. Kirkbride, J.J. Harada, D. Zilberman, R.L. Fischer, Proceedings of the National
Academy of Sciences 108 (2011) 1755–1762.
date_created: 2021-06-07T07:40:38Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2021-12-14T08:33:49Z
day: '01'
department:
- _id: DaZi
doi: 10.1073/pnas.1019273108
extern: '1'
external_id:
pmid:
- '21257907'
intvolume: ' 108'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.1019273108
month: '02'
oa: 1
oa_version: Published Version
page: 1755-1762
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Regulation of imprinted gene expression in Arabidopsis endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 108
year: '2011'
...
---
_id: '9522'
abstract:
- lang: eng
text: Little is known about chromatin remodeling events immediately after fertilization.
A recent report by Autran et al. (2011) in Cell now shows that chromatin regulatory
pathways that silence transposable elements are responsible for global delayed
activation of gene expression in the early Arabidopsis embryo.
article_processing_charge: No
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zilberman D. Balancing Parental Contributions in Plant Embryonic Gene Activation.
Vol 20. Elsevier; 2011:735-736. doi:10.1016/j.devcel.2011.05.018
apa: Zilberman, D. (2011). Balancing parental contributions in plant embryonic
gene activation. Developmental Cell (Vol. 20, pp. 735–736). Elsevier.
https://doi.org/10.1016/j.devcel.2011.05.018
chicago: Zilberman, Daniel. Balancing Parental Contributions in Plant Embryonic
Gene Activation. Developmental Cell. Vol. 20. Elsevier, 2011. https://doi.org/10.1016/j.devcel.2011.05.018.
ieee: D. Zilberman, Balancing parental contributions in plant embryonic gene
activation, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.
ista: Zilberman D. 2011. Balancing parental contributions in plant embryonic gene
activation, Elsevier,p.
mla: Zilberman, Daniel. “Balancing Parental Contributions in Plant Embryonic Gene
Activation.” Developmental Cell, vol. 20, no. 6, Elsevier, 2011, pp. 735–36,
doi:10.1016/j.devcel.2011.05.018.
short: D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation,
Elsevier, 2011.
date_created: 2021-06-08T06:23:39Z
date_published: 2011-06-14T00:00:00Z
date_updated: 2021-12-14T08:34:37Z
day: '14'
department:
- _id: DaZi
doi: 10.1016/j.devcel.2011.05.018
extern: '1'
external_id:
pmid:
- '21664571'
intvolume: ' 20'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.devcel.2011.05.018
month: '06'
oa: 1
oa_version: Published Version
page: 735-736
pmid: 1
publication: Developmental Cell
publication_identifier:
eissn:
- 1878-1551
issn:
- 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Balancing parental contributions in plant embryonic gene activation
type: other_academic_publication
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2011'
...
---
_id: '9648'
abstract:
- lang: eng
text: In this paper, we establish a correspondence between the incremental algorithm
for computing AT-models [8,9] and the one for computing persistent homology [6,14,15].
We also present a decremental algorithm for computing AT-models that allows to
extend the persistence computation to a wider setting. Finally, we show how to
combine incremental and decremental techniques for persistent homology computation.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Rocio
full_name: Gonzalez-Diaz, Rocio
last_name: Gonzalez-Diaz
- first_name: Adrian
full_name: Ion, Adrian
id: 29F89302-F248-11E8-B48F-1D18A9856A87
last_name: Ion
- first_name: Maria Jose
full_name: Jimenez, Maria Jose
last_name: Jimenez
- first_name: Regina
full_name: Poyatos, Regina
last_name: Poyatos
citation:
ama: 'Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. Incremental-decremental algorithm
for computing AT-models and persistent homology. In: Computer Analysis of Images
and Patterns. Vol 6854. Springer Nature; 2011:286-293. doi:10.1007/978-3-642-23672-3_35'
apa: 'Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., & Poyatos, R. (2011). Incremental-decremental
algorithm for computing AT-models and persistent homology. In Computer Analysis
of Images and Patterns (Vol. 6854, pp. 286–293). Seville, Spain: Springer
Nature. https://doi.org/10.1007/978-3-642-23672-3_35'
chicago: Gonzalez-Diaz, Rocio, Adrian Ion, Maria Jose Jimenez, and Regina Poyatos.
“Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.”
In Computer Analysis of Images and Patterns, 6854:286–93. Springer Nature,
2011. https://doi.org/10.1007/978-3-642-23672-3_35.
ieee: R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental
algorithm for computing AT-models and persistent homology,” in Computer Analysis
of Images and Patterns, Seville, Spain, 2011, vol. 6854, pp. 286–293.
ista: 'Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental
algorithm for computing AT-models and persistent homology. Computer Analysis of
Images and Patterns. CAIP: International Conference on Computer Analysis of Images
and Patterns, LNCS, vol. 6854, 286–293.'
mla: Gonzalez-Diaz, Rocio, et al. “Incremental-Decremental Algorithm for Computing
AT-Models and Persistent Homology.” Computer Analysis of Images and Patterns,
vol. 6854, Springer Nature, 2011, pp. 286–93, doi:10.1007/978-3-642-23672-3_35.
short: R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis
of Images and Patterns, Springer Nature, 2011, pp. 286–293.
conference:
end_date: 2011-08-31
location: Seville, Spain
name: 'CAIP: International Conference on Computer Analysis of Images and Patterns'
start_date: 2011-08-29
date_created: 2021-07-11T22:01:19Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2026-06-18T19:56:17Z
day: '01'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.1007/978-3-642-23672-3_35
intvolume: ' 6854'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://hdl.handle.net/11441/30766
month: '08'
oa: 1
oa_version: Published Version
page: 286-293
publication: Computer Analysis of Images and Patterns
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783642236716'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Incremental-decremental algorithm for computing AT-models and persistent homology
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6854
year: '2011'
...
---
_id: '967'
abstract:
- lang: eng
text: Motivated by recent experiments on the material Ba3NiSb 2O9, we consider a
spin-one quantum antiferromagnet on a triangular lattice with the Heisenberg bilinear
and biquadratic exchange interactions and a single-ion anisotropy. Using a fermionic
"triplon" representation for spins, we study the phase diagram within
mean-field theory. In addition to a fully gapped spin-liquid ground state, we
find a state where one gapless triplon mode with a Fermi surface coexists with
d+id topological pairing of the other triplons. Despite the existence of a Fermi
surface, this ground state has fully gapped bulk spin excitations. Such a state
has linear in-temperature specific heat and constant in-plane spin susceptibility,
with an unusually high Wilson ratio.
author:
- first_name: Maksym
full_name: Maksym Serbyn
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
- first_name: Todadri
full_name: Senthil, Todadri S
last_name: Senthil
- first_name: Patrick
full_name: Lee, Patrick
last_name: Lee
citation:
ama: Serbyn M, Senthil T, Lee P. Exotic S=1 spin-liquid state with fermionic excitations
on the triangular lattice. Physical Review B - Condensed Matter and Materials
Physics. 2011;84(18). doi:10.1103/PhysRevB.84.180403
apa: Serbyn, M., Senthil, T., & Lee, P. (2011). Exotic S=1 spin-liquid state
with fermionic excitations on the triangular lattice. Physical Review B - Condensed
Matter and Materials Physics. American Physical Society. https://doi.org/10.1103/PhysRevB.84.180403
chicago: Serbyn, Maksym, Todadri Senthil, and Patrick Lee. “Exotic S=1 Spin-Liquid
State with Fermionic Excitations on the Triangular Lattice.” Physical Review
B - Condensed Matter and Materials Physics. American Physical Society, 2011.
https://doi.org/10.1103/PhysRevB.84.180403.
ieee: M. Serbyn, T. Senthil, and P. Lee, “Exotic S=1 spin-liquid state with fermionic
excitations on the triangular lattice,” Physical Review B - Condensed Matter
and Materials Physics, vol. 84, no. 18. American Physical Society, 2011.
ista: Serbyn M, Senthil T, Lee P. 2011. Exotic S=1 spin-liquid state with fermionic
excitations on the triangular lattice. Physical Review B - Condensed Matter and
Materials Physics. 84(18).
mla: Serbyn, Maksym, et al. “Exotic S=1 Spin-Liquid State with Fermionic Excitations
on the Triangular Lattice.” Physical Review B - Condensed Matter and Materials
Physics, vol. 84, no. 18, American Physical Society, 2011, doi:10.1103/PhysRevB.84.180403.
short: M. Serbyn, T. Senthil, P. Lee, Physical Review B - Condensed Matter and Materials
Physics 84 (2011).
date_created: 2018-12-11T11:49:27Z
date_published: 2011-11-03T00:00:00Z
date_updated: 2021-01-12T08:22:18Z
day: '03'
doi: 10.1103/PhysRevB.84.180403
extern: 1
intvolume: ' 84'
issue: '18'
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1108.3070
month: '11'
oa: 1
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '6432'
quality_controlled: 0
status: public
title: Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice
type: journal_article
volume: 84
year: '2011'
...
---
_id: '968'
abstract:
- lang: eng
text: A Reply to the Comment by Andrei Sergeev, M. Reizer, and V. Mitin.
author:
- first_name: Maksym
full_name: Maksym Serbyn
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
- first_name: Mikhail
full_name: Skvortsov, Mikhail A
last_name: Skvortsov
- first_name: Andrei
full_name: Varlamov, Andrei A
last_name: Varlamov
- first_name: Victor
full_name: Galitski, Victor M
last_name: Galitski
citation:
ama: 'Serbyn M, Skvortsov M, Varlamov A, Galitski V. Serbyn et al. Reply: Physical
Review Letters. 2011;106(13). doi:10.1103/PhysRevLett.106.139702'
apa: 'Serbyn, M., Skvortsov, M., Varlamov, A., & Galitski, V. (2011). Serbyn
et al. Reply: Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.106.139702'
chicago: Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski.
“Serbyn et Al. Reply:” Physical Review Letters. American Physical Society,
2011. https://doi.org/10.1103/PhysRevLett.106.139702.
ieee: M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Serbyn et al. Reply:,”
Physical Review Letters, vol. 106, no. 13. American Physical Society, 2011.
ista: 'Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2011. Serbyn et al. Reply:
Physical Review Letters. 106(13).'
mla: Serbyn, Maksym, et al. “Serbyn et Al. Reply:” Physical Review Letters,
vol. 106, no. 13, American Physical Society, 2011, doi:10.1103/PhysRevLett.106.139702.
short: M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, Physical Review Letters
106 (2011).
date_created: 2018-12-11T11:49:27Z
date_published: 2011-04-01T00:00:00Z
date_updated: 2021-01-12T08:22:19Z
day: '01'
doi: 10.1103/PhysRevLett.106.139702
extern: 1
intvolume: ' 106'
issue: '13'
month: '04'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6433'
quality_controlled: 0
status: public
title: 'Serbyn et al. Reply:'
type: journal_article
volume: 106
year: '2011'
...
---
_id: '969'
abstract:
- lang: eng
text: We investigate the isotope effect on the London penetration depth of a superconductor
which measures n S/m*, the ratio of superfluid density to effective mass. We use
a simplified model of electrons weakly coupled to a single phonon frequency ω
E, but assume that the energy gap Δ does not have any isotope effect. Nevertheless,
we find an isotope effect for n S/m* which is significant if Δ is sufficiently
large that it becomes comparable to ω E, a regime of interest to high-T c cuprate
superconductors and possibly other families of unconventional superconductors
with relatively high T c. Our model is too simple to describe the cuprates and
it gives the wrong sign of the isotope effect when compared with experiment, but
it is a proof of principle that the isotope effect exists for n S/m* in materials
where the pairing gap and T c are not of phonon origin and have no isotope effect.
author:
- first_name: Maksym
full_name: Maksym Serbyn
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
- first_name: Patrick
full_name: Lee, Patrick
last_name: Lee
citation:
ama: Serbyn M, Lee P. Isotope effect on the superfluid density in conventional and
high-temperature superconductors. Physical Review B - Condensed Matter and
Materials Physics. 2011;83(2). doi:10.1103/PhysRevB.83.024506
apa: Serbyn, M., & Lee, P. (2011). Isotope effect on the superfluid density
in conventional and high-temperature superconductors. Physical Review B - Condensed
Matter and Materials Physics. American Physical Society. https://doi.org/10.1103/PhysRevB.83.024506
chicago: Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density
in Conventional and High-Temperature Superconductors.” Physical Review B -
Condensed Matter and Materials Physics. American Physical Society, 2011. https://doi.org/10.1103/PhysRevB.83.024506.
ieee: M. Serbyn and P. Lee, “Isotope effect on the superfluid density in conventional
and high-temperature superconductors,” Physical Review B - Condensed Matter
and Materials Physics, vol. 83, no. 2. American Physical Society, 2011.
ista: Serbyn M, Lee P. 2011. Isotope effect on the superfluid density in conventional
and high-temperature superconductors. Physical Review B - Condensed Matter and
Materials Physics. 83(2).
mla: Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density
in Conventional and High-Temperature Superconductors.” Physical Review B -
Condensed Matter and Materials Physics, vol. 83, no. 2, American Physical
Society, 2011, doi:10.1103/PhysRevB.83.024506.
short: M. Serbyn, P. Lee, Physical Review B - Condensed Matter and Materials Physics
83 (2011).
date_created: 2018-12-11T11:49:28Z
date_published: 2011-01-19T00:00:00Z
date_updated: 2021-01-12T08:22:19Z
day: '19'
doi: 10.1103/PhysRevB.83.024506
extern: 1
intvolume: ' 83'
issue: '2'
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1009.2429
month: '01'
oa: 1
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '6434'
quality_controlled: 0
status: public
title: Isotope effect on the superfluid density in conventional and high-temperature
superconductors
type: journal_article
volume: 83
year: '2011'
...
---
_id: '9762'
abstract:
- lang: eng
text: Defining population structure and genetic diversity levels is of the utmost
importance for developing efficient conservation strategies. Overfishing has caused
mean annual catches of the European spiny lobster (Palinurus elephas) to decrease
alarmingly along its distribution area. In this context, there is a need for comprehensive
studies to evaluate the genetic health of the exploited populations. The present
work is based on a set of 10 nuclear markers amplified in 331 individuals from
10 different localities covering most of P. elephas distribution area. Samples
from Atlantic and Mediterranean basins showed small but significant differences,
indicating that P. elephas populations do not behave as a single panmictic unit
but form two partially-overlapping groups. Despite intense overfishing, our dataset
did not recover a recent bottleneck signal, and showed a large and stable historical
effective size instead. This result could be accounted for by specific life history
traits (reproduction and longevity) and the limitations of molecular markers in
covering very recent timescales for non temporal samples. Our study emphasizes
the necessity of integrating information on effective population sizes and life
history parameters when evaluating population connectivity levels from genetic
data.
article_processing_charge: No
author:
- first_name: Ferran
full_name: Palero, Ferran
id: 3F0E2A22-F248-11E8-B48F-1D18A9856A87
last_name: Palero
orcid: 0000-0002-0343-8329
- first_name: Pere
full_name: Abello, Pere
last_name: Abello
- first_name: Enrique
full_name: Macpherson, Enrique
last_name: Macpherson
- first_name: Mark
full_name: Beaumont, Mark
last_name: Beaumont
- first_name: Marta
full_name: Pascual, Marta
last_name: Pascual
citation:
ama: 'Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. Data from: Effect
of oceanographic barriers and overfishing on the population genetic structure
of the European spiny lobster (Palinurus elephas). 2011. doi:10.5061/dryad.299h8'
apa: 'Palero, F., Abello, P., Macpherson, E., Beaumont, M., & Pascual, M. (2011).
Data from: Effect of oceanographic barriers and overfishing on the population
genetic structure of the European spiny lobster (Palinurus elephas). IST Austria.
https://doi.org/10.5061/dryad.299h8'
chicago: 'Palero, Ferran, Pere Abello, Enrique Macpherson, Mark Beaumont, and Marta
Pascual. “Data from: Effect of Oceanographic Barriers and Overfishing on the Population
Genetic Structure of the European Spiny Lobster (Palinurus Elephas).” IST Austria,
2011. https://doi.org/10.5061/dryad.299h8.'
ieee: 'F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Data from:
Effect of oceanographic barriers and overfishing on the population genetic structure
of the European spiny lobster (Palinurus elephas).” IST Austria, 2011.'
ista: 'Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Data from:
Effect of oceanographic barriers and overfishing on the population genetic structure
of the European spiny lobster (Palinurus elephas), IST Austria, 10.5061/dryad.299h8.'
mla: 'Palero, Ferran, et al. Data from: Effect of Oceanographic Barriers and
Overfishing on the Population Genetic Structure of the European Spiny Lobster
(Palinurus Elephas). IST Austria, 2011, doi:10.5061/dryad.299h8.'
short: F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011).
date_created: 2021-08-02T07:11:19Z
date_published: 2011-05-12T00:00:00Z
date_updated: 2025-09-30T08:42:31Z
day: '12'
department:
- _id: NiBa
doi: 10.5061/dryad.299h8
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.299h8
month: '05'
oa: 1
oa_version: Published Version
publisher: IST Austria
related_material:
record:
- id: '3395'
relation: used_in_publication
status: public
status: public
title: 'Data from: Effect of oceanographic barriers and overfishing on the population
genetic structure of the European spiny lobster (Palinurus elephas)'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2011'
...
---
_id: '6496'
abstract:
- lang: eng
text: We report the switching behavior of the full bacterial flagellum system that
includes the filament and the motor in wild-type Escherichia coli cells. In sorting
the motor behavior by the clockwise bias, we find that the distributions of the
clockwise (CW) and counterclockwise (CCW) intervals are either exponential or
nonexponential with long tails. At low bias, CW intervals are exponentially distributed
and CCW intervals exhibit long tails. At intermediate CW bias (0.5) both CW and
CCW intervals are mainly exponentially distributed. A simple model suggests that
these two distinct switching behaviors are governed by the presence of signaling
noise within the chemotaxis network. Low noise yields exponentially distributed
intervals, whereas large noise yields nonexponential behavior with long tails.
These drastically different motor statistics may play a role in optimizing bacterial
behavior for a wide range of environmental conditions.
article_processing_charge: No
author:
- first_name: Heungwon
full_name: Park, Heungwon
last_name: Park
- first_name: Panos
full_name: Oikonomou, Panos
last_name: Oikonomou
- first_name: Calin C
full_name: Guet, Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
- first_name: Philippe
full_name: Cluzel, Philippe
last_name: Cluzel
citation:
ama: Park H, Oikonomou P, Guet CC, Cluzel P. Noise underlies switching behavior
of the bacterial flagellum. Biophysical Journal. 2011;101(10):2336-2340.
doi:10.1016/j.bpj.2011.09.040
apa: Park, H., Oikonomou, P., Guet, C. C., & Cluzel, P. (2011). Noise underlies
switching behavior of the bacterial flagellum. Biophysical Journal. Elsevier.
https://doi.org/10.1016/j.bpj.2011.09.040
chicago: Park, Heungwon, Panos Oikonomou, Calin C Guet, and Philippe Cluzel. “Noise
Underlies Switching Behavior of the Bacterial Flagellum.” Biophysical Journal.
Elsevier, 2011. https://doi.org/10.1016/j.bpj.2011.09.040.
ieee: H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching
behavior of the bacterial flagellum,” Biophysical Journal, vol. 101, no.
10. Elsevier, pp. 2336–2340, 2011.
ista: Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior
of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
mla: Park, Heungwon, et al. “Noise Underlies Switching Behavior of the Bacterial
Flagellum.” Biophysical Journal, vol. 101, no. 10, Elsevier, 2011, pp.
2336–40, doi:10.1016/j.bpj.2011.09.040.
short: H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011)
2336–2340.
date_created: 2019-05-28T11:54:29Z
date_published: 2011-11-16T00:00:00Z
date_updated: 2026-06-18T19:06:05Z
day: '16'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1016/j.bpj.2011.09.040
external_id:
isi:
- '000297143500008'
pmid:
- '22098731'
intvolume: ' 101'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218319/
month: '11'
oa: 1
oa_version: Published Version
page: 2336-2340
pmid: 1
publication: Biophysical Journal
publication_identifier:
issn:
- 0006-3495
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Noise underlies switching behavior of the bacterial flagellum
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 101
year: '2011'
...