---
_id: '8025'
abstract:
- lang: eng
  text: Chandelier (axoaxonic) cells (ChCs) are a distinct group of GABAergic interneurons
    that innervate the axon initial segments of pyramidal cells. However, their circuit
    role and the function of their clearly defined anatomical specificity remain unclear.
    Recent work has demonstrated that chandelier cells can produce depolarizing GABAergic
    PSPs, occasionally driving postsynaptic targets to spike. On the other hand, other
    work suggests that ChCs are hyperpolarizing and may have an inhibitory role. These
    disparate functional effects may reflect heterogeneity among ChCs. Here, using
    brain slices from transgenic mouse strains, we first demonstrate that, across
    different neocortical areas and genetic backgrounds, upper Layer 2/3 ChCs belong
    to a single electrophysiologically and morphologically defined population, extensively
    sampling Layer 1 inputs with asymmetric dendrites. Consistent with being a single
    cell type, we find electrical coupling between ChCs. We then investigate the effect
    of chandelier cell activation on pyramidal neuron spiking in several conditions,
    ranging from the resting membrane potential to stimuli designed to approximate
    in vivo membrane potential dynamics. We find that under quiescent conditions,
    chandelier cells are capable of both promoting and inhibiting spike generation,
    depending on the postsynaptic membrane potential. However, during in vivo-like
    membrane potential fluctuations, the dominant postsynaptic effect was a strong
    inhibition. Thus, neocortical chandelier cells, even from within a homogeneous
    population, appear to play a dual role in the circuit, helping to activate quiescent
    pyramidal neurons, while at the same time inhibiting active ones.
article_processing_charge: No
article_type: original
author:
- first_name: A. R.
  full_name: Woodruff, A. R.
  last_name: Woodruff
- first_name: L. M.
  full_name: McGarry, L. M.
  last_name: McGarry
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: M.
  full_name: Inan, M.
  last_name: Inan
- first_name: S. A.
  full_name: Anderson, S. A.
  last_name: Anderson
- first_name: R.
  full_name: Yuste, R.
  last_name: Yuste
citation:
  ama: Woodruff AR, McGarry LM, Vogels TP, Inan M, Anderson SA, Yuste R. State-dependent
    function of neocortical chandelier cells. <i>Journal of Neuroscience</i>. 2011;31(49):17872-17886.
    doi:<a href="https://doi.org/10.1523/jneurosci.3894-11.2011">10.1523/jneurosci.3894-11.2011</a>
  apa: Woodruff, A. R., McGarry, L. M., Vogels, T. P., Inan, M., Anderson, S. A.,
    &#38; Yuste, R. (2011). State-dependent function of neocortical chandelier cells.
    <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href="https://doi.org/10.1523/jneurosci.3894-11.2011">https://doi.org/10.1523/jneurosci.3894-11.2011</a>
  chicago: Woodruff, A. R., L. M. McGarry, Tim P Vogels, M. Inan, S. A. Anderson,
    and R. Yuste. “State-Dependent Function of Neocortical Chandelier Cells.” <i>Journal
    of Neuroscience</i>. Society for Neuroscience, 2011. <a href="https://doi.org/10.1523/jneurosci.3894-11.2011">https://doi.org/10.1523/jneurosci.3894-11.2011</a>.
  ieee: A. R. Woodruff, L. M. McGarry, T. P. Vogels, M. Inan, S. A. Anderson, and
    R. Yuste, “State-dependent function of neocortical chandelier cells,” <i>Journal
    of Neuroscience</i>, vol. 31, no. 49. Society for Neuroscience, pp. 17872–17886,
    2011.
  ista: Woodruff AR, McGarry LM, Vogels TP, Inan M, Anderson SA, Yuste R. 2011. State-dependent
    function of neocortical chandelier cells. Journal of Neuroscience. 31(49), 17872–17886.
  mla: Woodruff, A. R., et al. “State-Dependent Function of Neocortical Chandelier
    Cells.” <i>Journal of Neuroscience</i>, vol. 31, no. 49, Society for Neuroscience,
    2011, pp. 17872–86, doi:<a href="https://doi.org/10.1523/jneurosci.3894-11.2011">10.1523/jneurosci.3894-11.2011</a>.
  short: A.R. Woodruff, L.M. McGarry, T.P. Vogels, M. Inan, S.A. Anderson, R. Yuste,
    Journal of Neuroscience 31 (2011) 17872–17886.
date_created: 2020-06-25T13:09:49Z
date_published: 2011-12-07T00:00:00Z
date_updated: 2021-01-12T08:16:36Z
day: '7'
doi: 10.1523/jneurosci.3894-11.2011
extern: '1'
external_id:
  pmid:
  - '22159102'
intvolume: '        31'
issue: '49'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071969/
month: '12'
oa: 1
oa_version: Published Version
page: 17872-17886
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  issn:
  - 0270-6474
  - 1529-2401
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
status: public
title: State-dependent function of neocortical chandelier cells
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 31
year: '2011'
...
---
_id: '8074'
abstract:
- lang: eng
  text: Cortical neurons receive balanced excitatory and inhibitory synaptic currents.
    Such a balance could be established and maintained in an experience-dependent
    manner by synaptic plasticity at inhibitory synapses. We show that this mechanism
    provides an explanation for the sparse firing patterns observed in response to
    natural stimuli and fits well with a recently observed interaction of excitatory
    and inhibitory receptive field plasticity. The introduction of inhibitory plasticity
    in suitable recurrent networks provides a homeostatic mechanism that leads to
    asynchronous irregular network states. Further, it can accommodate synaptic memories
    with activity patterns that become indiscernible from the background state but
    can be reactivated by external stimuli. Our results suggest an essential role
    of inhibitory plasticity in the formation and maintenance of functional cortical
    circuitry.
article_processing_charge: No
article_type: original
author:
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: H.
  full_name: Sprekeler, H.
  last_name: Sprekeler
- first_name: F.
  full_name: Zenke, F.
  last_name: Zenke
- first_name: C.
  full_name: Clopath, C.
  last_name: Clopath
- first_name: W.
  full_name: Gerstner, W.
  last_name: Gerstner
citation:
  ama: Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. Inhibitory plasticity
    balances excitation and inhibition in sensory pathways and memory networks. <i>Science</i>.
    2011;334(6062):1569-1573. doi:<a href="https://doi.org/10.1126/science.1211095">10.1126/science.1211095</a>
  apa: Vogels, T. P., Sprekeler, H., Zenke, F., Clopath, C., &#38; Gerstner, W. (2011).
    Inhibitory plasticity balances excitation and inhibition in sensory pathways and
    memory networks. <i>Science</i>. American Association for the Advancement of Science.
    <a href="https://doi.org/10.1126/science.1211095">https://doi.org/10.1126/science.1211095</a>
  chicago: Vogels, Tim P, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner. “Inhibitory
    Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks.”
    <i>Science</i>. American Association for the Advancement of Science, 2011. <a
    href="https://doi.org/10.1126/science.1211095">https://doi.org/10.1126/science.1211095</a>.
  ieee: T. P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner, “Inhibitory
    plasticity balances excitation and inhibition in sensory pathways and memory networks,”
    <i>Science</i>, vol. 334, no. 6062. American Association for the Advancement of
    Science, pp. 1569–1573, 2011.
  ista: Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. 2011. Inhibitory plasticity
    balances excitation and inhibition in sensory pathways and memory networks. Science.
    334(6062), 1569–1573.
  mla: Vogels, Tim P., et al. “Inhibitory Plasticity Balances Excitation and Inhibition
    in Sensory Pathways and Memory Networks.” <i>Science</i>, vol. 334, no. 6062,
    American Association for the Advancement of Science, 2011, pp. 1569–73, doi:<a
    href="https://doi.org/10.1126/science.1211095">10.1126/science.1211095</a>.
  short: T.P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, W. Gerstner, Science 334
    (2011) 1569–1573.
date_created: 2020-06-30T13:26:17Z
date_published: 2011-12-16T00:00:00Z
date_updated: 2021-06-02T14:57:22Z
day: '16'
doi: 10.1126/science.1211095
extern: '1'
external_id:
  pmid:
  - '22075724'
intvolume: '       334'
issue: '6062'
language:
- iso: eng
month: '12'
oa_version: None
page: 1569-1573
pmid: 1
publication: Science
publication_identifier:
  issn:
  - 0036-8075
  - 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1126/science.336.6083.802-c
scopus_import: '1'
status: public
title: Inhibitory plasticity balances excitation and inhibition in sensory pathways
  and memory networks
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 334
year: '2011'
...
---
_id: '8464'
abstract:
- lang: eng
  text: 'Nonsymmetric motion: Solid‐state NMR measurements of dipolar coupling tensors
    provide insight into protein dynamics. The hitherto ignored asymmetry of the dipolar
    coupling tensor contains valuable information about motional asymmetry, which
    was used in the first direct site‐resolved measurement of such tensors. Important
    motions such as rotamer jumps can now be directly detected in the solid state.'
article_processing_charge: No
article_type: original
author:
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
- first_name: Matthias
  full_name: Huber, Matthias
  last_name: Huber
- first_name: Jérôme
  full_name: Boisbouvier, Jérôme
  last_name: Boisbouvier
- first_name: Beat H.
  full_name: Meier, Beat H.
  last_name: Meier
- first_name: Matthias
  full_name: Ernst, Matthias
  last_name: Ernst
citation:
  ama: Schanda P, Huber M, Boisbouvier J, Meier BH, Ernst M. Solid-state NMR measurements
    of asymmetric dipolar couplings provide insight into protein side-chain motion.
    <i>Angewandte Chemie International Edition</i>. 2011;50(46):11005-11009. doi:<a
    href="https://doi.org/10.1002/anie.201103944">10.1002/anie.201103944</a>
  apa: Schanda, P., Huber, M., Boisbouvier, J., Meier, B. H., &#38; Ernst, M. (2011).
    Solid-state NMR measurements of asymmetric dipolar couplings provide insight into
    protein side-chain motion. <i>Angewandte Chemie International Edition</i>. Wiley.
    <a href="https://doi.org/10.1002/anie.201103944">https://doi.org/10.1002/anie.201103944</a>
  chicago: Schanda, Paul, Matthias Huber, Jérôme Boisbouvier, Beat H. Meier, and Matthias
    Ernst. “Solid-State NMR Measurements of Asymmetric Dipolar Couplings Provide Insight
    into Protein Side-Chain Motion.” <i>Angewandte Chemie International Edition</i>.
    Wiley, 2011. <a href="https://doi.org/10.1002/anie.201103944">https://doi.org/10.1002/anie.201103944</a>.
  ieee: P. Schanda, M. Huber, J. Boisbouvier, B. H. Meier, and M. Ernst, “Solid-state
    NMR measurements of asymmetric dipolar couplings provide insight into protein
    side-chain motion,” <i>Angewandte Chemie International Edition</i>, vol. 50, no.
    46. Wiley, pp. 11005–11009, 2011.
  ista: Schanda P, Huber M, Boisbouvier J, Meier BH, Ernst M. 2011. Solid-state NMR
    measurements of asymmetric dipolar couplings provide insight into protein side-chain
    motion. Angewandte Chemie International Edition. 50(46), 11005–11009.
  mla: Schanda, Paul, et al. “Solid-State NMR Measurements of Asymmetric Dipolar Couplings
    Provide Insight into Protein Side-Chain Motion.” <i>Angewandte Chemie International
    Edition</i>, vol. 50, no. 46, Wiley, 2011, pp. 11005–09, doi:<a href="https://doi.org/10.1002/anie.201103944">10.1002/anie.201103944</a>.
  short: P. Schanda, M. Huber, J. Boisbouvier, B.H. Meier, M. Ernst, Angewandte Chemie
    International Edition 50 (2011) 11005–11009.
date_created: 2020-09-18T10:09:40Z
date_published: 2011-09-14T00:00:00Z
date_updated: 2021-01-12T08:19:27Z
day: '14'
doi: 10.1002/anie.201103944
extern: '1'
intvolume: '        50'
issue: '46'
language:
- iso: eng
month: '09'
oa_version: None
page: 11005-11009
publication: Angewandte Chemie International Edition
publication_identifier:
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1002/anie.201206663
status: public
title: Solid-state NMR measurements of asymmetric dipolar couplings provide insight
  into protein side-chain motion
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2011'
...
---
_id: '8468'
article_processing_charge: No
article_type: original
author:
- first_name: Daniela
  full_name: Lalli, Daniela
  last_name: Lalli
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
- first_name: Anup
  full_name: Chowdhury, Anup
  last_name: Chowdhury
- first_name: Joren
  full_name: Retel, Joren
  last_name: Retel
- first_name: Matthias
  full_name: Hiller, Matthias
  last_name: Hiller
- first_name: Victoria A.
  full_name: Higman, Victoria A.
  last_name: Higman
- first_name: Lieselotte
  full_name: Handel, Lieselotte
  last_name: Handel
- first_name: Vipin
  full_name: Agarwal, Vipin
  last_name: Agarwal
- first_name: Bernd
  full_name: Reif, Bernd
  last_name: Reif
- first_name: Barth
  full_name: van Rossum, Barth
  last_name: van Rossum
- first_name: Ümit
  full_name: Akbey, Ümit
  last_name: Akbey
- first_name: Hartmut
  full_name: Oschkinat, Hartmut
  last_name: Oschkinat
citation:
  ama: Lalli D, Schanda P, Chowdhury A, et al. Three-dimensional deuterium-carbon
    correlation experiments for high-resolution solid-state MAS NMR spectroscopy of
    large proteins. <i>Journal of Biomolecular NMR</i>. 2011;51(4):477-485. doi:<a
    href="https://doi.org/10.1007/s10858-011-9578-1">10.1007/s10858-011-9578-1</a>
  apa: Lalli, D., Schanda, P., Chowdhury, A., Retel, J., Hiller, M., Higman, V. A.,
    … Oschkinat, H. (2011). Three-dimensional deuterium-carbon correlation experiments
    for high-resolution solid-state MAS NMR spectroscopy of large proteins. <i>Journal
    of Biomolecular NMR</i>. Springer Nature. <a href="https://doi.org/10.1007/s10858-011-9578-1">https://doi.org/10.1007/s10858-011-9578-1</a>
  chicago: Lalli, Daniela, Paul Schanda, Anup Chowdhury, Joren Retel, Matthias Hiller,
    Victoria A. Higman, Lieselotte Handel, et al. “Three-Dimensional Deuterium-Carbon
    Correlation Experiments for High-Resolution Solid-State MAS NMR Spectroscopy of
    Large Proteins.” <i>Journal of Biomolecular NMR</i>. Springer Nature, 2011. <a
    href="https://doi.org/10.1007/s10858-011-9578-1">https://doi.org/10.1007/s10858-011-9578-1</a>.
  ieee: D. Lalli <i>et al.</i>, “Three-dimensional deuterium-carbon correlation experiments
    for high-resolution solid-state MAS NMR spectroscopy of large proteins,” <i>Journal
    of Biomolecular NMR</i>, vol. 51, no. 4. Springer Nature, pp. 477–485, 2011.
  ista: Lalli D, Schanda P, Chowdhury A, Retel J, Hiller M, Higman VA, Handel L, Agarwal
    V, Reif B, van Rossum B, Akbey Ü, Oschkinat H. 2011. Three-dimensional deuterium-carbon
    correlation experiments for high-resolution solid-state MAS NMR spectroscopy of
    large proteins. Journal of Biomolecular NMR. 51(4), 477–485.
  mla: Lalli, Daniela, et al. “Three-Dimensional Deuterium-Carbon Correlation Experiments
    for High-Resolution Solid-State MAS NMR Spectroscopy of Large Proteins.” <i>Journal
    of Biomolecular NMR</i>, vol. 51, no. 4, Springer Nature, 2011, pp. 477–85, doi:<a
    href="https://doi.org/10.1007/s10858-011-9578-1">10.1007/s10858-011-9578-1</a>.
  short: D. Lalli, P. Schanda, A. Chowdhury, J. Retel, M. Hiller, V.A. Higman, L.
    Handel, V. Agarwal, B. Reif, B. van Rossum, Ü. Akbey, H. Oschkinat, Journal of
    Biomolecular NMR 51 (2011) 477–485.
date_created: 2020-09-18T10:10:43Z
date_published: 2011-10-25T00:00:00Z
date_updated: 2021-01-12T08:19:29Z
day: '25'
doi: 10.1007/s10858-011-9578-1
extern: '1'
intvolume: '        51'
issue: '4'
language:
- iso: eng
month: '10'
oa_version: None
page: 477-485
publication: Journal of Biomolecular NMR
publication_identifier:
  issn:
  - 0925-2738
  - 1573-5001
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Three-dimensional deuterium-carbon correlation experiments for high-resolution
  solid-state MAS NMR spectroscopy of large proteins
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 51
year: '2011'
...
---
_id: '8469'
abstract:
- lang: eng
  text: The accurate experimental determination of dipolar-coupling constants for
    one-bond heteronuclear dipolar couplings in solids is a key for the quantification
    of the amplitudes of motional processes. Averaging of the dipolar coupling reports
    on motions on time scales up to the inverse of the coupling constant, in our case
    tens of microseconds. Combining dipolar-coupling derived order parameters that
    characterize the amplitudes of the motion with relaxation data leads to a more
    precise characterization of the dynamical parameters and helps to disentangle
    the amplitudes and the time scales of the motional processes, which impact relaxation
    rates in a highly correlated way. Here. we describe and characterize an improved
    experimental protocol – based on REDOR – to measure these couplings in perdeuterated
    proteins with a reduced sensitivity to experimental missettings. Because such
    effects are presently the dominant source of systematic errors in experimental
    dipolar-coupling measurements, these compensated experiments should help to significantly
    improve the precision of such data. A detailed comparison with other commonly
    used pulse sequences (T-MREV, phase-inverted CP,R18 5/2, and R18 7/1) is provided.
article_processing_charge: No
article_type: original
author:
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
- first_name: Beat H.
  full_name: Meier, Beat H.
  last_name: Meier
- first_name: Matthias
  full_name: Ernst, Matthias
  last_name: Ernst
citation:
  ama: Schanda P, Meier BH, Ernst M. Accurate measurement of one-bond H–X heteronuclear
    dipolar couplings in MAS solid-state NMR. <i>Journal of Magnetic Resonance</i>.
    2011;210(2):246-259. doi:<a href="https://doi.org/10.1016/j.jmr.2011.03.015">10.1016/j.jmr.2011.03.015</a>
  apa: Schanda, P., Meier, B. H., &#38; Ernst, M. (2011). Accurate measurement of
    one-bond H–X heteronuclear dipolar couplings in MAS solid-state NMR. <i>Journal
    of Magnetic Resonance</i>. Elsevier. <a href="https://doi.org/10.1016/j.jmr.2011.03.015">https://doi.org/10.1016/j.jmr.2011.03.015</a>
  chicago: Schanda, Paul, Beat H. Meier, and Matthias Ernst. “Accurate Measurement
    of One-Bond H–X Heteronuclear Dipolar Couplings in MAS Solid-State NMR.” <i>Journal
    of Magnetic Resonance</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.jmr.2011.03.015">https://doi.org/10.1016/j.jmr.2011.03.015</a>.
  ieee: P. Schanda, B. H. Meier, and M. Ernst, “Accurate measurement of one-bond H–X
    heteronuclear dipolar couplings in MAS solid-state NMR,” <i>Journal of Magnetic
    Resonance</i>, vol. 210, no. 2. Elsevier, pp. 246–259, 2011.
  ista: Schanda P, Meier BH, Ernst M. 2011. Accurate measurement of one-bond H–X heteronuclear
    dipolar couplings in MAS solid-state NMR. Journal of Magnetic Resonance. 210(2),
    246–259.
  mla: Schanda, Paul, et al. “Accurate Measurement of One-Bond H–X Heteronuclear Dipolar
    Couplings in MAS Solid-State NMR.” <i>Journal of Magnetic Resonance</i>, vol.
    210, no. 2, Elsevier, 2011, pp. 246–59, doi:<a href="https://doi.org/10.1016/j.jmr.2011.03.015">10.1016/j.jmr.2011.03.015</a>.
  short: P. Schanda, B.H. Meier, M. Ernst, Journal of Magnetic Resonance 210 (2011)
    246–259.
date_created: 2020-09-18T10:10:50Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2021-01-12T08:19:29Z
day: '01'
doi: 10.1016/j.jmr.2011.03.015
extern: '1'
intvolume: '       210'
issue: '2'
keyword:
- Nuclear and High Energy Physics
- Biophysics
- Biochemistry
- Condensed Matter Physics
language:
- iso: eng
month: '06'
oa_version: None
page: 246-259
publication: Journal of Magnetic Resonance
publication_identifier:
  issn:
  - 1090-7807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Accurate measurement of one-bond H–X heteronuclear dipolar couplings in MAS
  solid-state NMR
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 210
year: '2011'
...
---
_id: '8470'
abstract:
- lang: eng
  text: 'Adding a new dimension: 4D or 3D proton‐detected spectra of perdeuterated
    protein samples with 1H labelled amides and methyl groups permit collecting unambiguous
    distance restraints with high sensitivity and determining protein structure by
    solid‐state NMR (see picture).'
article_processing_charge: No
article_type: original
author:
- first_name: Matthias
  full_name: Huber, Matthias
  last_name: Huber
- first_name: Sebastian
  full_name: Hiller, Sebastian
  last_name: Hiller
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
- first_name: Matthias
  full_name: Ernst, Matthias
  last_name: Ernst
- first_name: Anja
  full_name: Böckmann, Anja
  last_name: Böckmann
- first_name: René
  full_name: Verel, René
  last_name: Verel
- first_name: Beat H.
  full_name: Meier, Beat H.
  last_name: Meier
citation:
  ama: Huber M, Hiller S, Schanda P, et al. A proton-detected 4D solid-state NMR experiment
    for protein structure determination. <i>ChemPhysChem</i>. 2011;12(5):915-918.
    doi:<a href="https://doi.org/10.1002/cphc.201100062">10.1002/cphc.201100062</a>
  apa: Huber, M., Hiller, S., Schanda, P., Ernst, M., Böckmann, A., Verel, R., &#38;
    Meier, B. H. (2011). A proton-detected 4D solid-state NMR experiment for protein
    structure determination. <i>ChemPhysChem</i>. Wiley. <a href="https://doi.org/10.1002/cphc.201100062">https://doi.org/10.1002/cphc.201100062</a>
  chicago: Huber, Matthias, Sebastian Hiller, Paul Schanda, Matthias Ernst, Anja Böckmann,
    René Verel, and Beat H. Meier. “A Proton-Detected 4D Solid-State NMR Experiment
    for Protein Structure Determination.” <i>ChemPhysChem</i>. Wiley, 2011. <a href="https://doi.org/10.1002/cphc.201100062">https://doi.org/10.1002/cphc.201100062</a>.
  ieee: M. Huber <i>et al.</i>, “A proton-detected 4D solid-state NMR experiment for
    protein structure determination,” <i>ChemPhysChem</i>, vol. 12, no. 5. Wiley,
    pp. 915–918, 2011.
  ista: Huber M, Hiller S, Schanda P, Ernst M, Böckmann A, Verel R, Meier BH. 2011.
    A proton-detected 4D solid-state NMR experiment for protein structure determination.
    ChemPhysChem. 12(5), 915–918.
  mla: Huber, Matthias, et al. “A Proton-Detected 4D Solid-State NMR Experiment for
    Protein Structure Determination.” <i>ChemPhysChem</i>, vol. 12, no. 5, Wiley,
    2011, pp. 915–18, doi:<a href="https://doi.org/10.1002/cphc.201100062">10.1002/cphc.201100062</a>.
  short: M. Huber, S. Hiller, P. Schanda, M. Ernst, A. Böckmann, R. Verel, B.H. Meier,
    ChemPhysChem 12 (2011) 915–918.
date_created: 2020-09-18T10:10:56Z
date_published: 2011-02-15T00:00:00Z
date_updated: 2021-01-12T08:19:30Z
day: '15'
doi: 10.1002/cphc.201100062
extern: '1'
intvolume: '        12'
issue: '5'
keyword:
- Physical and Theoretical Chemistry
- Atomic and Molecular Physics
- and Optics
language:
- iso: eng
month: '02'
oa_version: None
page: 915-918
publication: ChemPhysChem
publication_identifier:
  issn:
  - 1439-4235
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: A proton-detected 4D solid-state NMR experiment for protein structure determination
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2011'
...
---
_id: '8471'
abstract:
- lang: eng
  text: Despite the importance of protein fibrils in the context of conformational
    diseases, information on their structure is still sparse. Hydrogen/deuterium exchange
    measurements of backbone amide protons allow the identification hydrogen-bonding
    patterns and reveal pertinent information on the amyloid β-sheet architecture.
    However, they provide only little information on the identity of residues exposed
    to solvent or buried inside the fibril core. NMR spectroscopy is a potent method
    for identifying solvent-accessible residues in proteins via observation of polarization
    transfer between chemically exchanging side-chain protons and water protons. We
    show here that the combined use of highly deuterated samples and fast magic-angle
    spinning greatly attenuates unwanted spin diffusion and allows identification
    of polarization exchange with the solvent in a site-specific manner. We apply
    this measurement protocol to HET-s(218–289) prion fibrils under different conditions
    (including physiological pH, where protofibrils assemble together into thicker
    fibrils) and demonstrate that each protofibril of HET-s(218–289), is surrounded
    by water, thus excluding the existence of extended dry interfibril contacts. We
    also show that exchangeable side-chain protons inside the hydrophobic core of
    HET-s(218–289) do not exchange over time intervals of weeks to months. The experiments
    proposed in this study can provide insight into the detailed structural features
    of amyloid fibrils in general.
article_processing_charge: No
article_type: original
author:
- first_name: Hélène
  full_name: Van Melckebeke, Hélène
  last_name: Van Melckebeke
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
- first_name: Julia
  full_name: Gath, Julia
  last_name: Gath
- first_name: Christian
  full_name: Wasmer, Christian
  last_name: Wasmer
- first_name: René
  full_name: Verel, René
  last_name: Verel
- first_name: Adam
  full_name: Lange, Adam
  last_name: Lange
- first_name: Beat H.
  full_name: Meier, Beat H.
  last_name: Meier
- first_name: Anja
  full_name: Böckmann, Anja
  last_name: Böckmann
citation:
  ama: Van Melckebeke H, Schanda P, Gath J, et al. Probing water accessibility in
    HET-s(218–289) amyloid fibrils by solid-state NMR. <i>Journal of Molecular Biology</i>.
    2011;405(3):765-772. doi:<a href="https://doi.org/10.1016/j.jmb.2010.11.004">10.1016/j.jmb.2010.11.004</a>
  apa: Van Melckebeke, H., Schanda, P., Gath, J., Wasmer, C., Verel, R., Lange, A.,
    … Böckmann, A. (2011). Probing water accessibility in HET-s(218–289) amyloid fibrils
    by solid-state NMR. <i>Journal of Molecular Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.jmb.2010.11.004">https://doi.org/10.1016/j.jmb.2010.11.004</a>
  chicago: Van Melckebeke, Hélène, Paul Schanda, Julia Gath, Christian Wasmer, René
    Verel, Adam Lange, Beat H. Meier, and Anja Böckmann. “Probing Water Accessibility
    in HET-s(218–289) Amyloid Fibrils by Solid-State NMR.” <i>Journal of Molecular
    Biology</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.jmb.2010.11.004">https://doi.org/10.1016/j.jmb.2010.11.004</a>.
  ieee: H. Van Melckebeke <i>et al.</i>, “Probing water accessibility in HET-s(218–289)
    amyloid fibrils by solid-state NMR,” <i>Journal of Molecular Biology</i>, vol.
    405, no. 3. Elsevier, pp. 765–772, 2011.
  ista: Van Melckebeke H, Schanda P, Gath J, Wasmer C, Verel R, Lange A, Meier BH,
    Böckmann A. 2011. Probing water accessibility in HET-s(218–289) amyloid fibrils
    by solid-state NMR. Journal of Molecular Biology. 405(3), 765–772.
  mla: Van Melckebeke, Hélène, et al. “Probing Water Accessibility in HET-s(218–289)
    Amyloid Fibrils by Solid-State NMR.” <i>Journal of Molecular Biology</i>, vol.
    405, no. 3, Elsevier, 2011, pp. 765–72, doi:<a href="https://doi.org/10.1016/j.jmb.2010.11.004">10.1016/j.jmb.2010.11.004</a>.
  short: H. Van Melckebeke, P. Schanda, J. Gath, C. Wasmer, R. Verel, A. Lange, B.H.
    Meier, A. Böckmann, Journal of Molecular Biology 405 (2011) 765–772.
date_created: 2020-09-18T10:11:03Z
date_published: 2011-01-21T00:00:00Z
date_updated: 2021-01-12T08:19:30Z
day: '21'
doi: 10.1016/j.jmb.2010.11.004
extern: '1'
intvolume: '       405'
issue: '3'
language:
- iso: eng
month: '01'
oa_version: None
page: 765-772
publication: Journal of Molecular Biology
publication_identifier:
  issn:
  - 0022-2836
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Probing water accessibility in HET-s(218–289) amyloid fibrils by solid-state
  NMR
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 405
year: '2011'
...
---
_id: '8505'
abstract:
- lang: eng
  text: The classical principle of least action says that orbits of mechanical systems
    extremize action; an important subclass are those orbits that minimize action.
    In this paper we utilize this principle along with Aubry-Mather theory to construct
    (Birkhoff) regions of instability for a certain three-body problem, given by a
    Hamiltonian system of 2 degrees of freedom. We believe that these methods can
    be applied to construct instability regions for a variety of Hamiltonian systems
    with 2 degrees of freedom. The Hamiltonian model we consider describes dynamics
    of a Sun-Jupiter-comet system, and under some simplifying assumptions, we show
    the existence of instabilities for the orbit of the comet. In particular, we show
    that a comet which starts close to an orbit in the shape of an ellipse of eccentricity
    e=0.66 can increase in eccentricity up to e=0.96. In the sequels to this paper,
    we extend the result to beyond e=1 and show the existence of ejection orbits.
    Such orbits are initially well within the range of our solar system. This might
    give an indication of why most objects rotating around the Sun in our solar system
    have relatively low eccentricity.
article_processing_charge: No
article_type: original
author:
- first_name: Joseph
  full_name: Galante, Joseph
  last_name: Galante
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
citation:
  ama: Galante J, Kaloshin V. Destruction of invariant curves in the restricted circular
    planar three-body problem by using comparison of action. <i>Duke Mathematical
    Journal</i>. 2011;159(2):275-327. doi:<a href="https://doi.org/10.1215/00127094-1415878">10.1215/00127094-1415878</a>
  apa: Galante, J., &#38; Kaloshin, V. (2011). Destruction of invariant curves in
    the restricted circular planar three-body problem by using comparison of action.
    <i>Duke Mathematical Journal</i>. Duke University Press. <a href="https://doi.org/10.1215/00127094-1415878">https://doi.org/10.1215/00127094-1415878</a>
  chicago: Galante, Joseph, and Vadim Kaloshin. “Destruction of Invariant Curves in
    the Restricted Circular Planar Three-Body Problem by Using Comparison of Action.”
    <i>Duke Mathematical Journal</i>. Duke University Press, 2011. <a href="https://doi.org/10.1215/00127094-1415878">https://doi.org/10.1215/00127094-1415878</a>.
  ieee: J. Galante and V. Kaloshin, “Destruction of invariant curves in the restricted
    circular planar three-body problem by using comparison of action,” <i>Duke Mathematical
    Journal</i>, vol. 159, no. 2. Duke University Press, pp. 275–327, 2011.
  ista: Galante J, Kaloshin V. 2011. Destruction of invariant curves in the restricted
    circular planar three-body problem by using comparison of action. Duke Mathematical
    Journal. 159(2), 275–327.
  mla: Galante, Joseph, and Vadim Kaloshin. “Destruction of Invariant Curves in the
    Restricted Circular Planar Three-Body Problem by Using Comparison of Action.”
    <i>Duke Mathematical Journal</i>, vol. 159, no. 2, Duke University Press, 2011,
    pp. 275–327, doi:<a href="https://doi.org/10.1215/00127094-1415878">10.1215/00127094-1415878</a>.
  short: J. Galante, V. Kaloshin, Duke Mathematical Journal 159 (2011) 275–327.
date_created: 2020-09-18T10:47:41Z
date_published: 2011-08-04T00:00:00Z
date_updated: 2021-01-12T08:19:45Z
day: '04'
doi: 10.1215/00127094-1415878
extern: '1'
intvolume: '       159'
issue: '2'
keyword:
- General Mathematics
language:
- iso: eng
month: '08'
oa_version: None
page: 275-327
publication: Duke Mathematical Journal
publication_identifier:
  issn:
  - 0012-7094
publication_status: published
publisher: Duke University Press
quality_controlled: '1'
status: public
title: Destruction of invariant curves in the restricted circular planar three-body
  problem by using comparison of action
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 159
year: '2011'
...
---
_id: '881'
author:
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: 'Kondrashov F. Gene Dosage and Duplication. In: <i>Evolution after Gene Duplication</i>.
    Wiley-Blackwell; 2011:57-76. doi:<a href="https://doi.org/10.1002/9780470619902.ch4">10.1002/9780470619902.ch4</a>'
  apa: Kondrashov, F. (2011). Gene Dosage and Duplication. In <i>Evolution after Gene
    Duplication</i> (pp. 57–76). Wiley-Blackwell. <a href="https://doi.org/10.1002/9780470619902.ch4">https://doi.org/10.1002/9780470619902.ch4</a>
  chicago: Kondrashov, Fyodor. “Gene Dosage and Duplication.” In <i>Evolution after
    Gene Duplication</i>, 57–76. Wiley-Blackwell, 2011. <a href="https://doi.org/10.1002/9780470619902.ch4">https://doi.org/10.1002/9780470619902.ch4</a>.
  ieee: F. Kondrashov, “Gene Dosage and Duplication,” in <i>Evolution after Gene Duplication</i>,
    Wiley-Blackwell, 2011, pp. 57–76.
  ista: 'Kondrashov F. 2011.Gene Dosage and Duplication. In: Evolution after Gene
    Duplication. , 57–76.'
  mla: Kondrashov, Fyodor. “Gene Dosage and Duplication.” <i>Evolution after Gene
    Duplication</i>, Wiley-Blackwell, 2011, pp. 57–76, doi:<a href="https://doi.org/10.1002/9780470619902.ch4">10.1002/9780470619902.ch4</a>.
  short: F. Kondrashov, in:, Evolution after Gene Duplication, Wiley-Blackwell, 2011,
    pp. 57–76.
date_created: 2018-12-11T11:49:00Z
date_published: 2011-03-14T00:00:00Z
date_updated: 2021-01-12T08:21:08Z
day: '14'
doi: 10.1002/9780470619902.ch4
extern: 1
month: '03'
page: 57 - 76
publication: Evolution after Gene Duplication
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6766'
quality_controlled: 0
status: public
title: Gene Dosage and Duplication
type: book_chapter
year: '2011'
...
---
_id: '890'
abstract:
- lang: eng
  text: Recent discovery of the Large-billed Reed Warbler (Acrocephalus orinus) in
    museums and in the wild significantly expanded our knowledge of its morphological
    traits and genetic variability, and revealed new data on geographical distribution
    of the breeding grounds, migration routes and wintering locations of this species.
    It is now certain that A. orinus is breeding in Central Asia; however, the precise
    area of distribution remains unclear. The difficulty in the further study of this
    species lies in the small number of known specimens, with only 13 currently available
    in museums, and in the relative uncertainty of the breeding area and habitat of
    this species. Following morphological and genetic analyses from Svensson, et al,
    we describe 14 new A. orinus specimens from collections of Zoological Museums
    of the former USSR from the territory of Central Asian states. All of these specimens
    were erroneously labeled as Blyth's Reed Warbler (A. dumetorum), which is thought
    to be a breeding species in these areas. The 14 new A. orinus specimens were collected
    during breeding season while most of the 85 A. dumetorum specimens from the same
    area were collected during the migration period. Our data indicate that the Central
    Asian territory previously attributed as breeding grounds of A. dumetorum is likely
    to constitute the breeding territory of A. orinus. This rare case of a re-description
    of the breeding territory of a lost species emphasizes the importance of maintenance
    of museum collections around the world. If the present data on the breeding grounds
    of A. orinus are confirmed with field observations and collections, the literature
    on the biology of A. dumetorum from the southern part of its range may have to
    be reconsidered.
acknowledgement: |
  The work was supported by the Plan Nacional grant number BFU2009-09271 from the Spanish Ministry of Science and Innovation.
  We extend our thanks to A.M. Peklo and I.V. Fadeev for granting us access to ornithological collections, to V.S. Shishkin, M.V. Kalyakin, R.D. Kashkarov, O.V. Belyalov and V.M. Loskot for valuable insights and to L. Svensson for extensive feedback on the manuscript. We thank E.I. Rogaev for access to ancient DNA facility.
author:
- first_name: Evgeniy
  full_name: Koblik, Evgeniy A
  last_name: Koblik
- first_name: Yaroslav
  full_name: Red'Kin, Yaroslav A
  last_name: Red'Kin
- first_name: Margarita
  full_name: Meer, Margarita S
  last_name: Meer
- first_name: Romain
  full_name: Derelle, Romain
  last_name: Derelle
- first_name: Sofia
  full_name: Golenkina, Sofia A
  last_name: Golenkina
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
- first_name: Vladimir
  full_name: Arkhipov, Vladimir Y
  last_name: Arkhipov
citation:
  ama: 'Koblik E, Red’Kin Y, Meer M, et al. Acrocephalus orinus: A case of Mistaken
    identity. <i>PLoS One</i>. 2011;6(4). doi:<a href="https://doi.org/10.1371/journal.pone.0017716">10.1371/journal.pone.0017716</a>'
  apa: 'Koblik, E., Red’Kin, Y., Meer, M., Derelle, R., Golenkina, S., Kondrashov,
    F., &#38; Arkhipov, V. (2011). Acrocephalus orinus: A case of Mistaken identity.
    <i>PLoS One</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0017716">https://doi.org/10.1371/journal.pone.0017716</a>'
  chicago: 'Koblik, Evgeniy, Yaroslav Red’Kin, Margarita Meer, Romain Derelle, Sofia
    Golenkina, Fyodor Kondrashov, and Vladimir Arkhipov. “Acrocephalus Orinus: A Case
    of Mistaken Identity.” <i>PLoS One</i>. Public Library of Science, 2011. <a href="https://doi.org/10.1371/journal.pone.0017716">https://doi.org/10.1371/journal.pone.0017716</a>.'
  ieee: 'E. Koblik <i>et al.</i>, “Acrocephalus orinus: A case of Mistaken identity,”
    <i>PLoS One</i>, vol. 6, no. 4. Public Library of Science, 2011.'
  ista: 'Koblik E, Red’Kin Y, Meer M, Derelle R, Golenkina S, Kondrashov F, Arkhipov
    V. 2011. Acrocephalus orinus: A case of Mistaken identity. PLoS One. 6(4).'
  mla: 'Koblik, Evgeniy, et al. “Acrocephalus Orinus: A Case of Mistaken Identity.”
    <i>PLoS One</i>, vol. 6, no. 4, Public Library of Science, 2011, doi:<a href="https://doi.org/10.1371/journal.pone.0017716">10.1371/journal.pone.0017716</a>.'
  short: E. Koblik, Y. Red’Kin, M. Meer, R. Derelle, S. Golenkina, F. Kondrashov,
    V. Arkhipov, PLoS One 6 (2011).
date_created: 2018-12-11T11:49:02Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T08:21:18Z
day: '01'
doi: 10.1371/journal.pone.0017716
extern: 1
intvolume: '         6'
issue: '4'
month: '01'
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '6760'
quality_controlled: 0
status: public
title: 'Acrocephalus orinus: A case of Mistaken identity'
type: journal_article
volume: 6
year: '2011'
...
---
_id: '90'
abstract:
- lang: eng
  text: A popular method for generating micron-sized aerosols is to submerge ultrasonic
    (ω ∼ MHz) piezoelectric oscillators in a water bath. The submerged oscillator
    atomizes the fluid, creating droplets with radii proportional to the wavelength
    of the standing wave at the fluid surface. Classical theory for the Faraday instability
    predicts a parametric instability driving a capillary wave at the subharmonic
    (ω / 2) frequency. For many applications it is desirable to reduce the size of
    the droplets; however, using higher frequency oscillators becomes impractical
    beyond a few MHz. Observations are presented that demonstrate that smaller droplets
    may also be created by increasing the driving amplitude of the oscillator, and
    that this effect becomes more pronounced for large driving frequencies. It is
    shown that these observations are consistent with a transition from droplets associated
    with subharmonic (ω/2) capillary waves to harmonic (ω) capillary waves induced
    by larger driving frequencies and amplitudes, as predicted by a stability analysis
    of the capillary waves.
author:
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: A
  full_name: Guillen, A
  last_name: Guillen
- first_name: Nick
  full_name: Jones, Nick
  last_name: Jones
- first_name: Tom
  full_name: Donnelly, Tom
  last_name: Donnelly
- first_name: Andrew
  full_name: Bernoff, Andrew
  last_name: Bernoff
citation:
  ama: Higginbotham AP, Guillen A, Jones N, Donnelly T, Bernoff A. Evidence of the
    harmonic Faraday instability in ultrasonic atomization experiments with a deep,
    inviscid fluid. <i>Journal of the Acoustical Society of America</i>. 2011;130(5):2694-2699.
    doi:<a href="https://doi.org/10.1121/1.3643816">10.1121/1.3643816</a>
  apa: Higginbotham, A. P., Guillen, A., Jones, N., Donnelly, T., &#38; Bernoff, A.
    (2011). Evidence of the harmonic Faraday instability in ultrasonic atomization
    experiments with a deep, inviscid fluid. <i>Journal of the Acoustical Society
    of America</i>. Acoustical Society of America. <a href="https://doi.org/10.1121/1.3643816">https://doi.org/10.1121/1.3643816</a>
  chicago: Higginbotham, Andrew P, A Guillen, Nick Jones, Tom Donnelly, and Andrew
    Bernoff. “Evidence of the Harmonic Faraday Instability in Ultrasonic Atomization
    Experiments with a Deep, Inviscid Fluid.” <i>Journal of the Acoustical Society
    of America</i>. Acoustical Society of America, 2011. <a href="https://doi.org/10.1121/1.3643816">https://doi.org/10.1121/1.3643816</a>.
  ieee: A. P. Higginbotham, A. Guillen, N. Jones, T. Donnelly, and A. Bernoff, “Evidence
    of the harmonic Faraday instability in ultrasonic atomization experiments with
    a deep, inviscid fluid,” <i>Journal of the Acoustical Society of America</i>,
    vol. 130, no. 5. Acoustical Society of America, pp. 2694–2699, 2011.
  ista: Higginbotham AP, Guillen A, Jones N, Donnelly T, Bernoff A. 2011. Evidence
    of the harmonic Faraday instability in ultrasonic atomization experiments with
    a deep, inviscid fluid. Journal of the Acoustical Society of America. 130(5),
    2694–2699.
  mla: Higginbotham, Andrew P., et al. “Evidence of the Harmonic Faraday Instability
    in Ultrasonic Atomization Experiments with a Deep, Inviscid Fluid.” <i>Journal
    of the Acoustical Society of America</i>, vol. 130, no. 5, Acoustical Society
    of America, 2011, pp. 2694–99, doi:<a href="https://doi.org/10.1121/1.3643816">10.1121/1.3643816</a>.
  short: A.P. Higginbotham, A. Guillen, N. Jones, T. Donnelly, A. Bernoff, Journal
    of the Acoustical Society of America 130 (2011) 2694–2699.
date_created: 2018-12-11T11:44:34Z
date_published: 2011-11-16T00:00:00Z
date_updated: 2021-01-12T08:21:44Z
day: '16'
doi: 10.1121/1.3643816
extern: '1'
external_id:
  pmid:
  - '    22087897'
intvolume: '       130'
issue: '5'
language:
- iso: eng
month: '11'
oa_version: None
page: 2694 - 2699
pmid: 1
publication: Journal of the Acoustical Society of America
publication_status: published
publisher: Acoustical Society of America
publist_id: '7964'
quality_controlled: '1'
status: public
title: Evidence of the harmonic Faraday instability in ultrasonic atomization experiments
  with a deep, inviscid fluid
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 130
year: '2011'
...
---
_id: '9143'
abstract:
- lang: eng
  text: Understanding and predicting the response of the hydrological cycle to climate
    change is a major challenge with important societal implications. Much progress
    has been made in understanding the response of global average precipitation by
    considering the energy balances of the atmosphere and the surface1,2,3,4,5,6.
    This energetic perspective reveals that changes in temperature, greenhouse gases,
    aerosols, solar forcing and cloud feedbacks can all affect the global average
    rate of precipitation5,7,8,9,10,11. Local precipitation changes have conventionally
    been analysed using the water vapour budget, but here we show that the energetic
    approach can be extended to local changes in precipitation by including changes
    in horizontal energy transport. In simulations of twenty-first century climate
    change, this energy transport accounts for much of the spatial variability in
    precipitation change. We show that changes in radiative and surface sensible heat
    fluxes are a guide to the local precipitation response over land and at large
    scales, but not at small scales over the ocean, where cloud and water vapour radiative
    feedbacks dampen the response. The energetic approach described here helps bridge
    the gap between our understanding of global and regional precipitation changes.
    It could be applied to better understand the response of regional precipitation
    to different radiative forcings, including geo-engineering schemes, as well as
    to understand the differences between the fast and slow responses of regional
    precipitation to such forcings.
article_processing_charge: No
article_type: original
author:
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: P. A.
  full_name: O’Gorman, P. A.
  last_name: O’Gorman
citation:
  ama: Muller CJ, O’Gorman PA. An energetic perspective on the regional response of
    precipitation to climate change. <i>Nature Climate Change</i>. 2011;1(5):266-271.
    doi:<a href="https://doi.org/10.1038/nclimate1169">10.1038/nclimate1169</a>
  apa: Muller, C. J., &#38; O’Gorman, P. A. (2011). An energetic perspective on the
    regional response of precipitation to climate change. <i>Nature Climate Change</i>.
    Springer Nature. <a href="https://doi.org/10.1038/nclimate1169">https://doi.org/10.1038/nclimate1169</a>
  chicago: Muller, Caroline J, and P. A. O’Gorman. “An Energetic Perspective on the
    Regional Response of Precipitation to Climate Change.” <i>Nature Climate Change</i>.
    Springer Nature, 2011. <a href="https://doi.org/10.1038/nclimate1169">https://doi.org/10.1038/nclimate1169</a>.
  ieee: C. J. Muller and P. A. O’Gorman, “An energetic perspective on the regional
    response of precipitation to climate change,” <i>Nature Climate Change</i>, vol.
    1, no. 5. Springer Nature, pp. 266–271, 2011.
  ista: Muller CJ, O’Gorman PA. 2011. An energetic perspective on the regional response
    of precipitation to climate change. Nature Climate Change. 1(5), 266–271.
  mla: Muller, Caroline J., and P. A. O’Gorman. “An Energetic Perspective on the Regional
    Response of Precipitation to Climate Change.” <i>Nature Climate Change</i>, vol.
    1, no. 5, Springer Nature, 2011, pp. 266–71, doi:<a href="https://doi.org/10.1038/nclimate1169">10.1038/nclimate1169</a>.
  short: C.J. Muller, P.A. O’Gorman, Nature Climate Change 1 (2011) 266–271.
date_created: 2021-02-15T14:39:29Z
date_published: 2011-07-24T00:00:00Z
date_updated: 2022-01-24T13:52:11Z
day: '24'
doi: 10.1038/nclimate1169
extern: '1'
intvolume: '         1'
issue: '5'
language:
- iso: eng
month: '07'
oa_version: None
page: 266-271
publication: Nature Climate Change
publication_identifier:
  issn:
  - 1758-678X
  - 1758-6798
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: An energetic perspective on the regional response of precipitation to climate
  change
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 1
year: '2011'
...
---
_id: '9144'
abstract:
- lang: eng
  text: "A cloud-resolving model is used to investigate the effect of warming on high
    percentiles of precipitation (precipitation extremes) in the idealized setting
    of radiative-convective equilibrium. While this idealized setting does not allow
    for several factors that influence precipitation in the tropics, it does allow
    for an evaluation of the response of precipitation extremes to warming in simulations
    with resolved rather than parameterized convection. The methodology developed
    should also be applicable to less idealized simulations.\r\n\r\nModeled precipitation
    extremes are found to increase in magnitude in response to an increase in sea
    surface temperature. A dry static energy budget is used to relate the changes
    in precipitation extremes to changes in atmospheric temperature, vertical velocity,
    and precipitation efficiency. To first order, the changes in precipitation extremes
    are captured by changes in the mean temperature structure of the atmosphere. Changes
    in vertical velocities play a secondary role and tend to weaken the strength of
    precipitation extremes, despite an intensification of updraft velocities in the
    upper troposphere. The influence of changes in condensate transports on precipitation
    extremes is quantified in terms of a precipitation efficiency; it does not change
    greatly with warming.\r\n\r\nTropical precipitation extremes have previously been
    found to increase at a greater fractional rate than the amount of atmospheric
    water vapor in observations of present-day variability and in some climate model
    simulations with parameterized convection. But the fractional increases in precipitation
    extremes in the cloud-resolving simulations are comparable in magnitude to those
    in surface water vapor concentrations (owing to a partial cancellation between
    dynamical and thermodynamical changes), and are substantially less than the fractional
    increases in column water vapor."
article_processing_charge: No
article_type: original
author:
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: Paul A.
  full_name: O’Gorman, Paul A.
  last_name: O’Gorman
- first_name: Larissa E.
  full_name: Back, Larissa E.
  last_name: Back
citation:
  ama: Muller CJ, O’Gorman PA, Back LE. Intensification of precipitation extremes
    with warming in a cloud-resolving model. <i>Journal of Climate</i>. 2011;24(11):2784-2800.
    doi:<a href="https://doi.org/10.1175/2011jcli3876.1">10.1175/2011jcli3876.1</a>
  apa: Muller, C. J., O’Gorman, P. A., &#38; Back, L. E. (2011). Intensification of
    precipitation extremes with warming in a cloud-resolving model. <i>Journal of
    Climate</i>. American Meteorological Society. <a href="https://doi.org/10.1175/2011jcli3876.1">https://doi.org/10.1175/2011jcli3876.1</a>
  chicago: Muller, Caroline J, Paul A. O’Gorman, and Larissa E. Back. “Intensification
    of Precipitation Extremes with Warming in a Cloud-Resolving Model.” <i>Journal
    of Climate</i>. American Meteorological Society, 2011. <a href="https://doi.org/10.1175/2011jcli3876.1">https://doi.org/10.1175/2011jcli3876.1</a>.
  ieee: C. J. Muller, P. A. O’Gorman, and L. E. Back, “Intensification of precipitation
    extremes with warming in a cloud-resolving model,” <i>Journal of Climate</i>,
    vol. 24, no. 11. American Meteorological Society, pp. 2784–2800, 2011.
  ista: Muller CJ, O’Gorman PA, Back LE. 2011. Intensification of precipitation extremes
    with warming in a cloud-resolving model. Journal of Climate. 24(11), 2784–2800.
  mla: Muller, Caroline J., et al. “Intensification of Precipitation Extremes with
    Warming in a Cloud-Resolving Model.” <i>Journal of Climate</i>, vol. 24, no. 11,
    American Meteorological Society, 2011, pp. 2784–800, doi:<a href="https://doi.org/10.1175/2011jcli3876.1">10.1175/2011jcli3876.1</a>.
  short: C.J. Muller, P.A. O’Gorman, L.E. Back, Journal of Climate 24 (2011) 2784–2800.
date_created: 2021-02-15T14:39:57Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2022-01-24T13:52:46Z
day: '01'
doi: 10.1175/2011jcli3876.1
extern: '1'
intvolume: '        24'
issue: '11'
keyword:
- Atmospheric Science
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1175/2011JCLI3876.1
month: '06'
oa: 1
oa_version: Published Version
page: 2784-2800
publication: Journal of Climate
publication_identifier:
  eissn:
  - 1520-0442
  issn:
  - 0894-8755
publication_status: published
publisher: American Meteorological Society
quality_controlled: '1'
status: public
title: Intensification of precipitation extremes with warming in a cloud-resolving
  model
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 24
year: '2011'
...
---
_id: '918'
abstract:
- lang: eng
  text: We study theoretically the shapes of a dividing epithelial monolayer of cells
    lying on top of an elastic stroma. The negative tension created by cell division
    provokes a buckling instability at a finite wave vector leading to the formation
    of periodic arrays of villi and crypts. The instability is similar to the buckling
    of a metallic plate under compression. We use the results to rationalize the various
    structures of the intestinal lining observed in vivo. Taking into account the
    coupling between cell division and local curvature, we obtain different patterns
    of villi and crypts, which could explain the different morphologies of the small
    intestine and the colon.
acknowledgement: We thank S. Fre and M. Huygue for discussion and for showing us in
  vivo samples and A. Bergès for help with the manuscript.
article_processing_charge: No
author:
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Jacques
  full_name: Prost, Jacques
  last_name: Prost
- first_name: Jean
  full_name: Joanny, Jean
  last_name: Joanny
citation:
  ama: Hannezo EB, Prost J, Joanny J. Instabilities of monolayered epithelia Shape
    and structure of villi and crypts. <i>Physical Review Letters</i>. 2011;107(7).
    doi:<a href="https://doi.org/10.1103/PhysRevLett.107.078104">10.1103/PhysRevLett.107.078104</a>
  apa: Hannezo, E. B., Prost, J., &#38; Joanny, J. (2011). Instabilities of monolayered
    epithelia Shape and structure of villi and crypts. <i>Physical Review Letters</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.107.078104">https://doi.org/10.1103/PhysRevLett.107.078104</a>
  chicago: Hannezo, Edouard B, Jacques Prost, and Jean Joanny. “Instabilities of Monolayered
    Epithelia Shape and Structure of Villi and Crypts.” <i>Physical Review Letters</i>.
    American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevLett.107.078104">https://doi.org/10.1103/PhysRevLett.107.078104</a>.
  ieee: E. B. Hannezo, J. Prost, and J. Joanny, “Instabilities of monolayered epithelia
    Shape and structure of villi and crypts,” <i>Physical Review Letters</i>, vol.
    107, no. 7. American Physical Society, 2011.
  ista: Hannezo EB, Prost J, Joanny J. 2011. Instabilities of monolayered epithelia
    Shape and structure of villi and crypts. Physical Review Letters. 107(7).
  mla: Hannezo, Edouard B., et al. “Instabilities of Monolayered Epithelia Shape and
    Structure of Villi and Crypts.” <i>Physical Review Letters</i>, vol. 107, no.
    7, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.107.078104">10.1103/PhysRevLett.107.078104</a>.
  short: E.B. Hannezo, J. Prost, J. Joanny, Physical Review Letters 107 (2011).
date_created: 2018-12-11T11:49:11Z
date_published: 2011-08-11T00:00:00Z
date_updated: 2021-01-12T08:21:54Z
day: '11'
doi: 10.1103/PhysRevLett.107.078104
extern: '1'
intvolume: '       107'
issue: '7'
language:
- iso: eng
month: '08'
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6521'
status: public
title: Instabilities of monolayered epithelia Shape and structure of villi and crypts
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2011'
...
---
_id: '919'
abstract:
- lang: eng
  text: Collective cell migration in tissues occurs throughout embryonic development,
    during wound healing, and in cancerous tumor invasion, yet most detailed knowledge
    of cell migration comes from single-cell studies. As single cells migrate, the
    shape of the cell body fluctuates dramatically through cyclic processes of extension,
    adhesion, and retraction, accompanied by erratic changes in migration direction.
    Within confluent cell layers, such subcellular motions must be coupled between
    neighbors, yet the influence of these subcellular motions on collective migration
    is not known. Here we study motion within a confluent epithelial cell sheet, simultaneously
    measuring collective migration and subcellular motions, covering a broad range
    of length scales, time scales, and cell densities. At large length scales and
    time scales collective migration slows as cell density rises, yet the fastest
    cells move in large, multicell groups whose scale grows with increasing cell density.
    This behavior has an intriguing analogy to dynamic heterogeneities found in particulate
    systems as they become more crowded and approach a glass transition. In addition
    we find a diminishing self-diffusivity of short-wavelength motions within the
    cell layer, and growing peaks in the vibrational density of states associated
    with cooperative cell-shape fluctuations. Both of these observations are also
    intriguingly reminiscent of a glass transition. Thus, these results provide a
    broad and suggestive analogy between cell motion within a confluent layer and
    the dynamics of supercooled colloidal and molecular fluids approaching a glass
    transition.
author:
- first_name: Thomas
  full_name: Angelini, Thomas
  last_name: Angelini
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Xavier
  full_name: Trepatc, Xavier
  last_name: Trepatc
- first_name: Manuel
  full_name: Marquez, Manuel
  last_name: Marquez
- first_name: Jeffrey
  full_name: Fredberg, Jeffrey
  last_name: Fredberg
- first_name: David
  full_name: Weitz, David
  last_name: Weitz
citation:
  ama: Angelini T, Hannezo EB, Trepatc X, Marquez M, Fredberg J, Weitz D. Glass-like
    dynamics of collective cell migration. <i>Proceedings of the National Academy
    of Sciences of the United States of America</i>. 2011;108(12):4714-4719. doi:<a
    href="https://doi.org/10.1073/pnas.1010059108">10.1073/pnas.1010059108</a>
  apa: Angelini, T., Hannezo, E. B., Trepatc, X., Marquez, M., Fredberg, J., &#38;
    Weitz, D. (2011). Glass-like dynamics of collective cell migration. <i>Proceedings
    of the National Academy of Sciences of the United States of America</i>. PNAS.
    <a href="https://doi.org/10.1073/pnas.1010059108">https://doi.org/10.1073/pnas.1010059108</a>
  chicago: Angelini, Thomas, Edouard B Hannezo, Xavier Trepatc, Manuel Marquez, Jeffrey
    Fredberg, and David Weitz. “Glass-like Dynamics of Collective Cell Migration.”
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>.
    PNAS, 2011. <a href="https://doi.org/10.1073/pnas.1010059108">https://doi.org/10.1073/pnas.1010059108</a>.
  ieee: T. Angelini, E. B. Hannezo, X. Trepatc, M. Marquez, J. Fredberg, and D. Weitz,
    “Glass-like dynamics of collective cell migration,” <i>Proceedings of the National
    Academy of Sciences of the United States of America</i>, vol. 108, no. 12. PNAS,
    pp. 4714–4719, 2011.
  ista: Angelini T, Hannezo EB, Trepatc X, Marquez M, Fredberg J, Weitz D. 2011. Glass-like
    dynamics of collective cell migration. Proceedings of the National Academy of
    Sciences of the United States of America. 108(12), 4714–4719.
  mla: Angelini, Thomas, et al. “Glass-like Dynamics of Collective Cell Migration.”
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>,
    vol. 108, no. 12, PNAS, 2011, pp. 4714–19, doi:<a href="https://doi.org/10.1073/pnas.1010059108">10.1073/pnas.1010059108</a>.
  short: T. Angelini, E.B. Hannezo, X. Trepatc, M. Marquez, J. Fredberg, D. Weitz,
    Proceedings of the National Academy of Sciences of the United States of America
    108 (2011) 4714–4719.
date_created: 2018-12-11T11:49:12Z
date_published: 2011-03-22T00:00:00Z
date_updated: 2021-01-12T08:21:54Z
day: '22'
doi: 10.1073/pnas.1010059108
extern: '1'
intvolume: '       108'
issue: '12'
language:
- iso: eng
month: '03'
oa_version: None
page: 4714 - 4719
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_status: published
publisher: PNAS
publist_id: '6522'
quality_controlled: '1'
status: public
title: Glass-like dynamics of collective cell migration
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2011'
...
---
_id: '923'
abstract:
- lang: eng
  text: The conserved role of Notch signaling in controlling intestinal cell fate
    specification and homeostasis has been extensively studied. Nevertheless, the
    precise identity of the cells in which Notch signaling is active and the role
    of different Notch receptor paralogues in the intestine remain ambiguous, due
    to the lack of reliable tools to investigate Notch expression and function in
    vivo. We generated a new series of transgenic mice that allowed us, by lineage
    analysis, to formally prove that Notch1 and Notch2 are specifically expressed
    in crypt stem cells. In addition, a novel Notch reporter mouse, Hes1-EmGFP SAT,
    demonstrated exclusive Notch activity in crypt stem cells and absorptive progenitors.
    This roster of knock-in and reporter mice represents a valuable resource to functionally
    explore the Notch pathway in vivo in virtually all tissues.
article_number: e25785
author:
- first_name: Silvia
  full_name: Fré, Silvia
  last_name: Fré
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Sanja
  full_name: Šale, Sanja
  last_name: Šale
- first_name: Mathilde
  full_name: Huyghe, Mathilde
  last_name: Huyghe
- first_name: Daniel
  full_name: Lafkas, Daniel
  last_name: Lafkas
- first_name: Holger
  full_name: Kissel, Holger
  last_name: Kissel
- first_name: Angeliki
  full_name: Louvi, Angeliki
  last_name: Louvi
- first_name: Jeffrey
  full_name: Greve, Jeffrey
  last_name: Greve
- first_name: Daniel
  full_name: Louvard, Daniel
  last_name: Louvard
- first_name: Spyros
  full_name: Artavanis Tsakonas, Spyros
  last_name: Artavanis Tsakonas
citation:
  ama: Fré S, Hannezo EB, Šale S, et al. Notch lineages and activity in intestinal
    stem cells determined by a new set of knock in mice. <i>PLoS One</i>. 2011;6(10).
    doi:<a href="https://doi.org/10.1371/journal.pone.0025785">10.1371/journal.pone.0025785</a>
  apa: Fré, S., Hannezo, E. B., Šale, S., Huyghe, M., Lafkas, D., Kissel, H., … Artavanis
    Tsakonas, S. (2011). Notch lineages and activity in intestinal stem cells determined
    by a new set of knock in mice. <i>PLoS One</i>. Public Library of Science. <a
    href="https://doi.org/10.1371/journal.pone.0025785">https://doi.org/10.1371/journal.pone.0025785</a>
  chicago: Fré, Silvia, Edouard B Hannezo, Sanja Šale, Mathilde Huyghe, Daniel Lafkas,
    Holger Kissel, Angeliki Louvi, Jeffrey Greve, Daniel Louvard, and Spyros Artavanis
    Tsakonas. “Notch Lineages and Activity in Intestinal Stem Cells Determined by
    a New Set of Knock in Mice.” <i>PLoS One</i>. Public Library of Science, 2011.
    <a href="https://doi.org/10.1371/journal.pone.0025785">https://doi.org/10.1371/journal.pone.0025785</a>.
  ieee: S. Fré <i>et al.</i>, “Notch lineages and activity in intestinal stem cells
    determined by a new set of knock in mice,” <i>PLoS One</i>, vol. 6, no. 10. Public
    Library of Science, 2011.
  ista: Fré S, Hannezo EB, Šale S, Huyghe M, Lafkas D, Kissel H, Louvi A, Greve J,
    Louvard D, Artavanis Tsakonas S. 2011. Notch lineages and activity in intestinal
    stem cells determined by a new set of knock in mice. PLoS One. 6(10), e25785.
  mla: Fré, Silvia, et al. “Notch Lineages and Activity in Intestinal Stem Cells Determined
    by a New Set of Knock in Mice.” <i>PLoS One</i>, vol. 6, no. 10, e25785, Public
    Library of Science, 2011, doi:<a href="https://doi.org/10.1371/journal.pone.0025785">10.1371/journal.pone.0025785</a>.
  short: S. Fré, E.B. Hannezo, S. Šale, M. Huyghe, D. Lafkas, H. Kissel, A. Louvi,
    J. Greve, D. Louvard, S. Artavanis Tsakonas, PLoS One 6 (2011).
date_created: 2018-12-11T11:49:13Z
date_published: 2011-10-03T00:00:00Z
date_updated: 2021-01-12T08:21:56Z
day: '03'
ddc:
- '570'
doi: 10.1371/journal.pone.0025785
extern: '1'
file:
- access_level: open_access
  checksum: b4e864125dfcb9fa57a9e01688838081
  content_type: application/pdf
  creator: dernst
  date_created: 2019-05-10T11:20:26Z
  date_updated: 2020-07-14T12:48:15Z
  file_id: '6401'
  file_name: 2011_PLOS1_Fre.PDF
  file_size: 2860615
  relation: main_file
file_date_updated: 2020-07-14T12:48:15Z
has_accepted_license: '1'
intvolume: '         6'
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '6520'
quality_controlled: '1'
status: public
title: Notch lineages and activity in intestinal stem cells determined by a new set
  of knock in mice
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2011'
...
---
_id: '9483'
abstract:
- lang: eng
  text: Imprinted genes are expressed primarily or exclusively from either the maternal
    or paternal allele, a phenomenon that occurs in flowering plants and mammals.
    Flowering plant imprinted gene expression has been described primarily in endosperm,
    a terminal nutritive tissue consumed by the embryo during seed development or
    after germination. Imprinted expression in Arabidopsis thaliana endosperm is orchestrated
    by differences in cytosine DNA methylation between the paternal and maternal genomes
    as well as by Polycomb group proteins. Currently, only 11 imprinted A. thaliana
    genes are known. Here, we use extensive sequencing of cDNA libraries to identify
    9 paternally expressed and 34 maternally expressed imprinted genes in A. thaliana
    endosperm that are regulated by the DNA-demethylating glycosylase DEMETER, the
    DNA methyltransferase MET1, and/or the core Polycomb group protein FIE. These
    genes encode transcription factors, proteins involved in hormone signaling, components
    of the ubiquitin protein degradation pathway, regulators of histone and DNA methylation,
    and small RNA pathway proteins. We also identify maternally expressed genes that
    may be regulated by unknown mechanisms or deposited from maternal tissues. We
    did not detect any imprinted genes in the embryo. Our results show that imprinted
    gene expression is an extensive mechanistically complex phenomenon that likely
    affects multiple aspects of seed development.
article_processing_charge: No
article_type: original
author:
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Juhyun
  full_name: Shin, Juhyun
  last_name: Shin
- first_name: Rie
  full_name: Uzawa, Rie
  last_name: Uzawa
- first_name: Pedro
  full_name: Silva, Pedro
  last_name: Silva
- first_name: Stephanie
  full_name: Cohen, Stephanie
  last_name: Cohen
- first_name: Matthew J.
  full_name: Bauer, Matthew J.
  last_name: Bauer
- first_name: Meryl
  full_name: Hashimoto, Meryl
  last_name: Hashimoto
- first_name: Ryan C.
  full_name: Kirkbride, Ryan C.
  last_name: Kirkbride
- first_name: John J.
  full_name: Harada, John J.
  last_name: Harada
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
citation:
  ama: Hsieh T-F, Shin J, Uzawa R, et al. Regulation of imprinted gene expression
    in Arabidopsis endosperm. <i>Proceedings of the National Academy of Sciences</i>.
    2011;108(5):1755-1762. doi:<a href="https://doi.org/10.1073/pnas.1019273108">10.1073/pnas.1019273108</a>
  apa: Hsieh, T.-F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M. J., … Fischer,
    R. L. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm.
    <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.1019273108">https://doi.org/10.1073/pnas.1019273108</a>
  chicago: Hsieh, Tzung-Fu, Juhyun Shin, Rie Uzawa, Pedro Silva, Stephanie Cohen,
    Matthew J. Bauer, Meryl Hashimoto, et al. “Regulation of Imprinted Gene Expression
    in Arabidopsis Endosperm.” <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences, 2011. <a href="https://doi.org/10.1073/pnas.1019273108">https://doi.org/10.1073/pnas.1019273108</a>.
  ieee: T.-F. Hsieh <i>et al.</i>, “Regulation of imprinted gene expression in Arabidopsis
    endosperm,” <i>Proceedings of the National Academy of Sciences</i>, vol. 108,
    no. 5. National Academy of Sciences, pp. 1755–1762, 2011.
  ista: Hsieh T-F, Shin J, Uzawa R, Silva P, Cohen S, Bauer MJ, Hashimoto M, Kirkbride
    RC, Harada JJ, Zilberman D, Fischer RL. 2011. Regulation of imprinted gene expression
    in Arabidopsis endosperm. Proceedings of the National Academy of Sciences. 108(5),
    1755–1762.
  mla: Hsieh, Tzung-Fu, et al. “Regulation of Imprinted Gene Expression in Arabidopsis
    Endosperm.” <i>Proceedings of the National Academy of Sciences</i>, vol. 108,
    no. 5, National Academy of Sciences, 2011, pp. 1755–62, doi:<a href="https://doi.org/10.1073/pnas.1019273108">10.1073/pnas.1019273108</a>.
  short: T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto,
    R.C. Kirkbride, J.J. Harada, D. Zilberman, R.L. Fischer, Proceedings of the National
    Academy of Sciences 108 (2011) 1755–1762.
date_created: 2021-06-07T07:40:38Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2021-12-14T08:33:49Z
day: '01'
department:
- _id: DaZi
doi: 10.1073/pnas.1019273108
extern: '1'
external_id:
  pmid:
  - '21257907'
intvolume: '       108'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1073/pnas.1019273108
month: '02'
oa: 1
oa_version: Published Version
page: 1755-1762
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Regulation of imprinted gene expression in Arabidopsis endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 108
year: '2011'
...
---
_id: '9522'
abstract:
- lang: eng
  text: Little is known about chromatin remodeling events immediately after fertilization.
    A recent report by Autran et al. (2011) in Cell now shows that chromatin regulatory
    pathways that silence transposable elements are responsible for global delayed
    activation of gene expression in the early Arabidopsis embryo.
article_processing_charge: No
author:
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Zilberman D. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>.
    Vol 20. Elsevier; 2011:735-736. doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.018">10.1016/j.devcel.2011.05.018</a>
  apa: Zilberman, D. (2011). <i>Balancing parental contributions in plant embryonic
    gene activation</i>. <i>Developmental Cell</i> (Vol. 20, pp. 735–736). Elsevier.
    <a href="https://doi.org/10.1016/j.devcel.2011.05.018">https://doi.org/10.1016/j.devcel.2011.05.018</a>
  chicago: Zilberman, Daniel. <i>Balancing Parental Contributions in Plant Embryonic
    Gene Activation</i>. <i>Developmental Cell</i>. Vol. 20. Elsevier, 2011. <a href="https://doi.org/10.1016/j.devcel.2011.05.018">https://doi.org/10.1016/j.devcel.2011.05.018</a>.
  ieee: D. Zilberman, <i>Balancing parental contributions in plant embryonic gene
    activation</i>, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.
  ista: Zilberman D. 2011. Balancing parental contributions in plant embryonic gene
    activation, Elsevier,p.
  mla: Zilberman, Daniel. “Balancing Parental Contributions in Plant Embryonic Gene
    Activation.” <i>Developmental Cell</i>, vol. 20, no. 6, Elsevier, 2011, pp. 735–36,
    doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.018">10.1016/j.devcel.2011.05.018</a>.
  short: D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation,
    Elsevier, 2011.
date_created: 2021-06-08T06:23:39Z
date_published: 2011-06-14T00:00:00Z
date_updated: 2021-12-14T08:34:37Z
day: '14'
department:
- _id: DaZi
doi: 10.1016/j.devcel.2011.05.018
extern: '1'
external_id:
  pmid:
  - '21664571'
intvolume: '        20'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.devcel.2011.05.018
month: '06'
oa: 1
oa_version: Published Version
page: 735-736
pmid: 1
publication: Developmental Cell
publication_identifier:
  eissn:
  - 1878-1551
  issn:
  - 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Balancing parental contributions in plant embryonic gene activation
type: other_academic_publication
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2011'
...
---
_id: '967'
abstract:
- lang: eng
  text: Motivated by recent experiments on the material Ba3NiSb 2O9, we consider a
    spin-one quantum antiferromagnet on a triangular lattice with the Heisenberg bilinear
    and biquadratic exchange interactions and a single-ion anisotropy. Using a fermionic
    &quot;triplon&quot; representation for spins, we study the phase diagram within
    mean-field theory. In addition to a fully gapped spin-liquid ground state, we
    find a state where one gapless triplon mode with a Fermi surface coexists with
    d+id topological pairing of the other triplons. Despite the existence of a Fermi
    surface, this ground state has fully gapped bulk spin excitations. Such a state
    has linear in-temperature specific heat and constant in-plane spin susceptibility,
    with an unusually high Wilson ratio.
author:
- first_name: Maksym
  full_name: Maksym Serbyn
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Todadri
  full_name: Senthil, Todadri S
  last_name: Senthil
- first_name: Patrick
  full_name: Lee, Patrick
  last_name: Lee
citation:
  ama: Serbyn M, Senthil T, Lee P. Exotic S=1 spin-liquid state with fermionic excitations
    on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials
    Physics</i>. 2011;84(18). doi:<a href="https://doi.org/10.1103/PhysRevB.84.180403">10.1103/PhysRevB.84.180403</a>
  apa: Serbyn, M., Senthil, T., &#38; Lee, P. (2011). Exotic S=1 spin-liquid state
    with fermionic excitations on the triangular lattice. <i>Physical Review B - Condensed
    Matter and Materials Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.84.180403">https://doi.org/10.1103/PhysRevB.84.180403</a>
  chicago: Serbyn, Maksym, Todadri Senthil, and Patrick Lee. “Exotic S=1 Spin-Liquid
    State with Fermionic Excitations on the Triangular Lattice.” <i>Physical Review
    B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011.
    <a href="https://doi.org/10.1103/PhysRevB.84.180403">https://doi.org/10.1103/PhysRevB.84.180403</a>.
  ieee: M. Serbyn, T. Senthil, and P. Lee, “Exotic S=1 spin-liquid state with fermionic
    excitations on the triangular lattice,” <i>Physical Review B - Condensed Matter
    and Materials Physics</i>, vol. 84, no. 18. American Physical Society, 2011.
  ista: Serbyn M, Senthil T, Lee P. 2011. Exotic S=1 spin-liquid state with fermionic
    excitations on the triangular lattice. Physical Review B - Condensed Matter and
    Materials Physics. 84(18).
  mla: Serbyn, Maksym, et al. “Exotic S=1 Spin-Liquid State with Fermionic Excitations
    on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials
    Physics</i>, vol. 84, no. 18, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevB.84.180403">10.1103/PhysRevB.84.180403</a>.
  short: M. Serbyn, T. Senthil, P. Lee, Physical Review B - Condensed Matter and Materials
    Physics 84 (2011).
date_created: 2018-12-11T11:49:27Z
date_published: 2011-11-03T00:00:00Z
date_updated: 2021-01-12T08:22:18Z
day: '03'
doi: 10.1103/PhysRevB.84.180403
extern: 1
intvolume: '        84'
issue: '18'
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1108.3070
month: '11'
oa: 1
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '6432'
quality_controlled: 0
status: public
title: Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice
type: journal_article
volume: 84
year: '2011'
...
---
_id: '968'
abstract:
- lang: eng
  text: A Reply to the Comment by Andrei Sergeev, M. Reizer, and V. Mitin.
author:
- first_name: Maksym
  full_name: Maksym Serbyn
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Mikhail
  full_name: Skvortsov, Mikhail A
  last_name: Skvortsov
- first_name: Andrei
  full_name: Varlamov, Andrei A
  last_name: Varlamov
- first_name: Victor
  full_name: Galitski, Victor M
  last_name: Galitski
citation:
  ama: 'Serbyn M, Skvortsov M, Varlamov A, Galitski V. Serbyn et al. Reply: <i>Physical
    Review Letters</i>. 2011;106(13). doi:<a href="https://doi.org/10.1103/PhysRevLett.106.139702">10.1103/PhysRevLett.106.139702</a>'
  apa: 'Serbyn, M., Skvortsov, M., Varlamov, A., &#38; Galitski, V. (2011). Serbyn
    et al. Reply: <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.106.139702">https://doi.org/10.1103/PhysRevLett.106.139702</a>'
  chicago: Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski.
    “Serbyn et Al. Reply:” <i>Physical Review Letters</i>. American Physical Society,
    2011. <a href="https://doi.org/10.1103/PhysRevLett.106.139702">https://doi.org/10.1103/PhysRevLett.106.139702</a>.
  ieee: M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Serbyn et al. Reply:,”
    <i>Physical Review Letters</i>, vol. 106, no. 13. American Physical Society, 2011.
  ista: 'Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2011. Serbyn et al. Reply:
    Physical Review Letters. 106(13).'
  mla: Serbyn, Maksym, et al. “Serbyn et Al. Reply:” <i>Physical Review Letters</i>,
    vol. 106, no. 13, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.106.139702">10.1103/PhysRevLett.106.139702</a>.
  short: M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, Physical Review Letters
    106 (2011).
date_created: 2018-12-11T11:49:27Z
date_published: 2011-04-01T00:00:00Z
date_updated: 2021-01-12T08:22:19Z
day: '01'
doi: 10.1103/PhysRevLett.106.139702
extern: 1
intvolume: '       106'
issue: '13'
month: '04'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6433'
quality_controlled: 0
status: public
title: 'Serbyn et al. Reply:'
type: journal_article
volume: 106
year: '2011'
...
