@article{3836,
  abstract     = {Hierarchical Timing Language (HTL) is a coordination language for distributed, hard real-time applications. HTL is a hierarchical extension of Giotto and, like its predecessor, based on the logical execution time (LET) paradigm of real-time programming. Giotto is compiled into code for a virtual machine, called the EmbeddedMachine (or E machine). If HTL is targeted to the E machine, then the hierarchicalprogram structure needs to be flattened; the flattening makes separatecompilation difficult, and may result in E machinecode of exponential size. In this paper, we propose a generalization of the E machine, which supports a hierarchicalprogram structure at runtime through real-time trigger mechanisms that are arranged in a tree. We present the generalized E machine, and a modular compiler for HTL that generates code of linear size. The compiler may generate code for any part of a given HTL program separately in any order.},
  author       = {Ghosal, Arkadeb and Iercan, Daniel and Kirsch, Christoph and Henzinger, Thomas A and Sangiovanni Vincentelli, Alberto},
  journal      = {Science of Computer Programming},
  number       = {2},
  pages        = {96 -- 112},
  publisher    = {Elsevier},
  title        = {{Separate compilation of hierarchical real-time programs into linear-bounded embedded machine code}},
  doi          = {10.1016/j.scico.2010.06.004},
  volume       = {77},
  year         = {2012},
}

@article{3846,
  abstract     = {We summarize classical and recent results about two-player games played on graphs with ω-regular objectives. These games have applications in the verification and synthesis of reactive systems. Important distinctions are whether a graph game is turn-based or concurrent; deterministic or stochastic; zero-sum or not. We cluster known results and open problems according to these classifications.},
  author       = {Chatterjee, Krishnendu and Henzinger, Thomas A},
  journal      = {Journal of Computer and System Sciences},
  number       = {2},
  pages        = {394 -- 413},
  publisher    = {Elsevier},
  title        = {{A survey of stochastic ω regular games}},
  doi          = {10.1016/j.jcss.2011.05.002},
  volume       = {78},
  year         = {2012},
}

@article{387,
  abstract     = {In this Letter we present detailed study of the density of states near defects in Bi 2Se 3. In particular, we present data on the commonly found triangular defects in this system. While we do not find any measurable quasiparticle scattering interference effects, we do find localized resonances, which can be well fitted by theory once the potential is taken to be extended to properly account for the observed defects. The data together with the fits confirm that while the local density of states around the Dirac point of the electronic spectrum at the surface is significantly disrupted near the impurity by the creation of low-energy resonance state, the Dirac point is not locally destroyed. We discuss our results in terms of the expected protected surface state of topological insulators. © 2012 American Physical Society.},
  author       = {Alpichshev, Zhanybek and Biswas, Rudro and Balatsky, Alexander and Analytis, James and Chu, Jiunhaw and Fisher, Ian and Kapitulnik, Aharon},
  journal      = {Physical Review Letters},
  number       = {20},
  publisher    = {American Physical Society},
  title        = {{STM imaging of impurity resonances on Bi 2Se 3}},
  doi          = {10.1103/PhysRevLett.108.206402},
  volume       = {108},
  year         = {2012},
}

@article{1725,
  abstract     = {The spatial organization of cell fates during development involves the interpretation of morphogen gradients by cellular signaling cascades and transcriptional networks. Recent studies use biophysical models, genetics, and quantitative imaging to unravel how tissue-level morphogen behavior arises from subcellular events. Moreover, data from several systems show that morphogen gradients, downstream signaling, and the activity of cell-intrinsic transcriptional networks change dynamically during pattern formation. Studies from Drosophila and now also vertebrates suggest that transcriptional network dynamics are central to the generation of gene expression patterns. Together, this leads to the view that pattern formation is an emergent behavior that results from the coordination of events occurring across molecular, cellular, and tissue scales. The development of novel approaches to study this complex process remains a challenge.},
  author       = {Anna Kicheva and Cohen, Michael H and Briscoe, James},
  journal      = {Science},
  number       = {6104},
  pages        = {210 -- 212},
  publisher    = {American Association for the Advancement of Science},
  title        = {{Developmental pattern formation: Insights from physics and biology}},
  doi          = {10.1126/science.1225182},
  volume       = {338},
  year         = {2012},
}

@article{1756,
  abstract     = {We report on the electronic transport properties of multiple-gate devices fabricated from undoped silicon nanowires. Understanding and control of the relevant transport mechanisms was achieved by means of local electrostatic gating and temperature-dependent measurements. The roles of the source/drain contacts and of the silicon channel could be independently evaluated and tuned. Wrap gates surrounding the silicide-silicon contact interfaces were proved to be effective in inducing a full suppression of the contact Schottky barriers, thereby enabling carrier injection down to liquid helium temperature. By independently tuning the effective Schottky barrier heights, a variety of reconfigurable device functionalities could be obtained. In particular, the same nanowire device could be configured to work as a Schottky barrier transistor, a Schottky diode, or a p-n diode with tunable polarities. This versatility was eventually exploited to realize a NAND logic gate with gain well above one.},
  author       = {Mongillo, Massimo and Spathis, Panayotis N and Georgios Katsaros and Gentile, Pascal and De Franceschi, Silvano},
  journal      = {Nano Letters},
  number       = {6},
  pages        = {3074 -- 3079},
  publisher    = {American Chemical Society},
  title        = {{Multifunctional devices and logic gates with undoped silicon nanowires}},
  doi          = {10.1021/nl300930m},
  volume       = {12},
  year         = {2012},
}

@article{1757,
  abstract     = {Self-assembled Ge wires with a height of only 3 unit cells and a length of up to 2 micrometers were grown on Si(001) by means of a catalyst-free method based on molecular beam epitaxy. The wires grow horizontally along either the [100] or the [010] direction. On atomically flat surfaces, they exhibit a highly uniform, triangular cross section. A simple thermodynamic model accounts for the existence of a preferential base width for longitudinal expansion, in quantitative agreement with the experimental findings. Despite the absence of intentional doping, the first transistor-type devices made from single wires show low-resistive electrical contacts and single-hole transport at sub-Kelvin temperatures. In view of their exceptionally small and self-defined cross section, these Ge wires hold promise for the realization of hole systems with exotic properties and provide a new development route for silicon-based nanoelectronics.},
  author       = {Zhang, Jianjun and Georgios Katsaros and Montalenti, Francesco and Scopece, Daniele and Rezaev, Roman O and Mickel, Christine H and Rellinghaus, Bernd and Miglio, Leo P and De Franceschi, Silvano and Rastelli, Armando and Schmidt, Oliver G},
  journal      = {Physical Review Letters},
  number       = {8},
  publisher    = {American Physical Society},
  title        = {{Monolithic growth of ultrathin Ge nanowires on Si(001) }},
  doi          = {10.1103/PhysRevLett.109.085502},
  volume       = {109},
  year         = {2012},
}

@article{1758,
  abstract     = {We studied the low-energy states of spin-1/2 quantum dots defined in InAs/InP nanowires and coupled to aluminum superconducting leads. By varying the superconducting gap Δ with a magnetic field B we investigated the transition from strong coupling Δ≪T K to weak-coupling Δ≫T K, where T K is the Kondo temperature. Below the critical field, we observe a persisting zero-bias Kondo resonance that vanishes only for low B or higher temperatures, leaving the room to more robust subgap structures at bias voltages between Δ and 2Δ. For strong and approximately symmetric tunnel couplings, a Josephson supercurrent is observed in addition to the Kondo peak. We ascribe the coexistence of a Kondo resonance and a superconducting gap to a significant density of intragap quasiparticle states, and the finite-bias subgap structures to tunneling through Shiba states. Our results, supported by numerical calculations, own relevance also in relation to tunnel-spectroscopy experiments aiming at the observation of Majorana fermions in hybrid nanostructures.},
  author       = {Lee, Eduardo J and Jiang, Xiaocheng and Aguado, Ramón and Georgios Katsaros and Lieber, Charles M and De Franceschi, Silvano},
  journal      = {Physical Review Letters},
  number       = {18},
  publisher    = {American Physical Society},
  title        = {{Zero-bias anomaly in a nanowire quantum dot coupled to superconductors}},
  doi          = {10.1103/PhysRevLett.109.186802},
  volume       = {109},
  year         = {2012},
}

@article{17613,
  abstract     = {We study the interaction of a supermassive black hole (SMBH) binary and a standard radiatively efficient thin accretion disk. We examine steady-state configurations of the disk and migrating SMBH system, self-consistently accounting for tidal and viscous torques and heating, radiative diffusion limited cooling, gas and radiation pressure, and the decay of the binary's orbit. We obtain a "phase diagram" of the system as a function of binary parameters, showing regimes in which both the disk structure and migration have a different character. Although massive binaries can create a central gap in the disk at large radii, the tidal barrier of the secondary causes a significant pile-up of gas outside of its orbit, which can lead to the closing of the gap. We find that this spillover occurs at an orbital separation as large as ~200 M_7^{-1/2} gravitational radii, where M = 10^7 M_7 Msun is the total binary mass. If the secondary is less massive than ~10^6 Msun, then the gap is closed before gravitational waves (GWs) start dominating the orbital decay. In this regime, the disk is still strongly perturbed, but the piled-up gas continuously overflows as in a porous dam, and crosses inside the secondary's orbit. The corresponding migration rate, which we label Type 1.5, is slower than the usual limiting cases known as Type I and II migration. Compared to an unperturbed disk, the steady-state disk in the overflowing regime is up to several hundred times brighter in the optical bands. Surveys such as PanSTARRS or LSST may discover the periodic variability of this population of binaries. Our results imply that the circumbinary disks around SMBHs can extend to small radii during the last stages of their merger, when they are detectable by LISA, and may produce coincident electromagnetic (EM) emission similar to active galactic nuclei (AGN).},
  author       = {Kocsis, Bence and Haiman, Zoltán and Loeb, Abraham},
  issn         = {0035-8711},
  journal      = {Monthly Notices of the Royal Astronomical Society},
  number       = {3},
  pages        = {2680--2700},
  publisher    = {Oxford University Press},
  title        = {{Gas pile-up, gap overflow and Type 1.5 migration in circumbinary discs: Application to supermassive black hole binaries}},
  doi          = {10.1111/j.1365-2966.2012.22118.x},
  volume       = {427},
  year         = {2012},
}

@article{17636,
  abstract     = {It is commonly believed that the earliest stages of star formation in the Universe were self-regulated by global radiation backgrounds - either by the ultraviolet (UV) Lyman-Werner (LW) photons emitted by the first stars (directly photodissociating H2), or by the X-rays produced by accretion on to the black hole (BH) remnants of these stars (heating the gas but catalysing H2 formation). Recent studies have suggested that a significant fraction of the first stars may have had low masses (a few M⊙). Such stars do not leave BH remnants and they have softer spectra, with copious infrared (IR) radiation at photon energies ∼1 eV. Similar to LW and X-ray photons, these photons have a mean-free path comparable to the Hubble distance, building up an early IR background. Here we show that if soft-spectrum stars, with masses of a few M⊙, contributed ≳0.3 per cent of the UV background (or their mass fraction exceeded ∼80 per cent), then their IR radiation dominated radiative feedback in the early Universe. The feedback is different from the UV feedback from high-mass stars, and occurs through the photodetachment of H− ions, necessary for efficient H2 formation. Nevertheless, we find that the baryon fraction which must be incorporated into low-mass stars in order to suppress H2 cooling is only a factor of a few higher than for high-mass stars.},
  author       = {Wolcott-Green, J. and Haiman, Zoltán},
  issn         = {1745-3925},
  journal      = {Monthly Notices of the Royal Astronomical Society: Letters},
  number       = {1},
  pages        = {L51--L55},
  publisher    = {Oxford University Press},
  title        = {{Feedback from the infrared background in the early universe}},
  doi          = {10.1111/j.1745-3933.2012.01298.x},
  volume       = {425},
  year         = {2012},
}

@inproceedings{17651,
  abstract     = {A decade after their first discovery, the origin of giant supermassive black holes (SMBHs), with masses in excess of 109 Msolar, at redshifts as early as z > 6, remains a puzzle. One possibility is that stellar-mass ``seed'' BHs, left behind by the first stars, accrete gas at close to the Eddington limit during a large fraction (>~ 50%) of the time. While maintaining such a high accretion rate may itself be difficult, here we focus on another, less commonly discussed problem in this scenario: unless BH seed formation and growth are preferentially suppressed in less massive protogalaxies, the mass density in M~106Msolar SMBHs at z ~ 6 already exceeds the locally observed SMBH mass density by several orders of magnitude. We show that the X-rays from the earliest accreting BHs themselves can cause a self-regulation, by partially ionizing and heating the intergalactic medium (IGM). This ``global warming'' suppresses the formation and growth of subsequent generations of BHs in low-mass halos, and can produce excellent agreement with recent estimates of the z = 6 SMBH mass function, without impeding the growth of the largest (M>~109Msolar) holes, which reside in the most massive galaxies that formed first. The proposed gravitational-wave observatory eLISA could detect several tens of major mergers between SMBHs at z > 6.},
  author       = {Haiman, Zoltán and Tanaka, Takamitsu and Perna, Rosalba},
  booktitle    = {AIP Conference Proceedings},
  issn         = {0094-243X},
  location     = {Kyoto, Japan},
  pages        = {303--308},
  publisher    = {American Institute of Physics},
  title        = {{Self-regulating the early growth of black holes through global warming}},
  doi          = {10.1063/1.4754372},
  volume       = {1480},
  year         = {2012},
}

@article{17660,
  abstract     = {Many astrophysical binaries, from planets to black holes, exert strong torques on their circumbinary accretion discs, and are expected to significantly modify the disc structure. Despite the several decade long history of the subject, the joint evolution of the binary + disc system has not been modelled with self-consistent assumptions for arbitrary mass ratios and accretion rates. Here, we solve the coupled binary–disc evolution equations analytically in the strongly perturbed limit, treating the azimuthally averaged angular momentum exchange between the disc and the binary and the modifications to the density, scaleheight, and viscosity self-consistently, including viscous and tidal heating, diffusion limited cooling, radiation pressure and the orbital decay of the binary. We find a solution with a central cavity and a migration rate similar to those previously obtained for Type II migration, applicable for large masses and binary separations, and near-equal mass ratios. However, we identify a distinct new regime, applicable at smaller separations and masses, and mass ratio in the range 10−3 ≲ q ≲ 0.1. For these systems, gas piles up outside the binary's orbit, but rather than creating a cavity, it continuously overflows as in a porous dam. The disc profile is intermediate between a weakly perturbed disc (producing Type I migration) and a disc with a gap (with Type II migration). However, the migration rate of the secondary is typically slower than both Type I and Type II rates. We term this new regime ‘Type 1.5’ migration.},
  author       = {Kocsis, Bence and Haiman, Zoltán and Loeb, Abraham},
  issn         = {0035-8711},
  journal      = {Monthly Notices of the Royal Astronomical Society},
  number       = {3},
  pages        = {2660--2679},
  publisher    = {Oxford University Press},
  title        = {{Gas pile-up, gap overflow and Type 1.5 migration in circumbinary discs: General theory}},
  doi          = {10.1111/j.1365-2966.2012.22129.x},
  volume       = {427},
  year         = {2012},
}

@article{17674,
  abstract     = {The power spectrum of cosmic infrared background (CIB) anisotropies is sensitive to the connection between star formation and dark matter haloes over the entire cosmic star formation history. Here we develop a model that associates star‐forming galaxies with dark matter haloes and their subhaloes. The model is based on a parametrized relation between the dust‐processed infrared luminosity and (sub)halo mass. By adjusting three free parameters, we attempt to simultaneously fit the four frequency bands of the Planck measurement of the CIB anisotropy power spectrum. To fit the data, we find that the star formation efficiency must peak on a halo mass scale of ≈5 × 10^12 M⊙ and the infrared luminosity per unit mass must increase rapidly with redshift. By comparing our predictions with a well‐calibrated phenomenological model for shot noise, and with a direct observation of source counts, we show that the mean duty cycle of the underlying infrared sources must be near unity, indicating that the CIB is dominated by long‐lived quiescent star formation, rather than intermittent short ‘starbursts’. Despite the improved flexibility of our model, the best simultaneous fit to all four Planck channels remains relatively poor. We discuss possible further extensions to alleviate the remaining tension with the data. Our model presents a theoretical framework for a future joint analysis of both background anisotropy and source count measurements.},
  author       = {Shang, Cien and Haiman, Zoltán and Knox, Lloyd and Oh, S. Peng},
  issn         = {0035-8711},
  journal      = {Monthly Notices of the Royal Astronomical Society},
  number       = {4},
  pages        = {2832--2845},
  publisher    = {Oxford University Press},
  title        = {{Improved models for cosmic infrared background anisotropies: New constraints on the infrared galaxy population}},
  doi          = {10.1111/j.1365-2966.2012.20510.x},
  volume       = {421},
  year         = {2012},
}

@article{17675,
  abstract     = {In this paper, we show that Minkowski Functionals (MFs) of weak gravitational lensing (WL) convergence maps contain significant non-Gaussian, cosmology-dependent information. To do this, we use a large suite of cosmological ray-tracing N-body simulations to create mock WL convergence maps, and study the cosmological information content of MFs derived from these maps. Our suite consists of 80 independent 512^3 N-body runs, covering seven different cosmologies, varying three cosmological parameters Omega_m, w, and sigma_8 one at a time, around a fiducial LambdaCDM model. In each cosmology, we use ray-tracing to create a thousand pseudo-independent 12 deg^2 convergence maps, and use these in a Monte Carlo procedure to estimate the joint confidence contours on the above three parameters. We include redshift tomography at three different source redshifts z_s=1, 1.5, 2, explore five different smoothing scales theta_G=1, 2, 3, 5, 10 arcmin, and explicitly compare and combine the MFs with the WL power spectrum. We find that the MFs capture a substantial amount of information from non-Gaussian features of convergence maps, i.e. beyond the power spectrum. The MFs are particularly well suited to break degeneracies and to constrain the dark energy equation of state parameter w (by a factor of ~ three better than from the power spectrum alone). The non-Gaussian information derives partly from the one-point function of the convergence (through V_0, the "area" MF), and partly through non-linear spatial information (through combining different smoothing scales for V_0, and through V_1 and V_2, the boundary length and genus MFs, respectively). In contrast to the power spectrum, the best constraints from the MFs are obtained only when multiple smoothing scales are combined.},
  author       = {Kratochvil, Jan M. and Lim, Eugene A. and Wang, Sheng and Haiman, Zoltán and May, Morgan and Huffenberger, Kevin},
  issn         = {1550-7998},
  journal      = {Physical Review D},
  number       = {10},
  publisher    = {American Physical Society},
  title        = {{Probing cosmology with weak lensing Minkowski functionals}},
  doi          = {10.1103/physrevd.85.103513},
  volume       = {85},
  year         = {2012},
}

@article{17678,
  abstract     = {The spectra of several high-redshift (z>6) quasars have shown evidence for a Gunn-Peterson (GP) damping wing, indicating a substantial mean neutral hydrogen fraction (x_HI > 0.03) in the z ~ 6 intergalactic medium (IGM). However, previous analyses assumed that the IGM was uniformly ionized outside of the quasar's HII region. Here we relax this assumption and model patchy reionization scenarios for a range of IGM and quasar parameters. We quantify the impact of these differences on the inferred x_HI, by fitting the spectra of three quasars: SDSS J1148+5251 (z=6.419), J1030+0524 (z=6.308), and J1623+3112 (z=6.247). We find that the best-fit values of x_HI in the patchy models agree well with the uniform case. More importantly, we confirm that the observed spectra favor the presence of a GP damping wing, with peak likelihoods decreasing by factors of > few - 10 when the spectra are modeled without a damping wing. We also find that the Ly alpha absorption spectra, by themselves, cannot distinguish the damping wing in a relatively neutral IGM from a damping wing in a highly ionized IGM, caused either by an isolated neutral patch, or by a damped Ly alpha absorber (DLA). However, neutral patches in a highly ionized universe (x_HI < 0.01), and DLAs with the large required column densities (N_HI > few x 10^{20} cm^{-2}) are both rare. As a result, when we include reasonable prior probabilities for the line of sight (LOS) to intercept either a neutral patch or a DLA at the required distance of ~ 40-60 comoving Mpc away from the quasar, we find strong lower limits on the neutral fraction in the IGM, x_HI > 0.1 (at 95% confidence). This strengthens earlier claims that a substantial global fraction of hydrogen in the z~6 IGM is in neutral form.},
  author       = {Schroeder, Joshua and Mesinger, Andrei and Haiman, Zoltán},
  issn         = {0035-8711},
  journal      = {Monthly Notices of the Royal Astronomical Society},
  number       = {4},
  pages        = {3058--3071},
  publisher    = {Oxford University Press},
  title        = {{Evidence of Gunn–Peterson damping wings in high-z quasar spectra: Strengthening the case for incomplete reionization at z ∼ 6–7}},
  doi          = {10.1093/mnras/sts253},
  volume       = {428},
  year         = {2012},
}

@article{17688,
  abstract     = {Pulsar timing arrays (PTAs) are expected to detect gravitational waves (GWs) from individual low-redshift (z<1.5) compact supermassive (M>10^9 Msun) black hole (SMBH) binaries with orbital periods of approx. 0.1 - 10 yrs. Identifying the electromagnetic (EM) counterparts of these sources would provide confirmation of putative direct detections of GWs, present a rare opportunity to study the environments of compact SMBH binaries, and could enable the use of these sources as standard sirens for cosmology. Here we consider the feasibility of such an EM identification. We show that because the host galaxies of resolved PTA sources are expected to be exceptionally massive and rare, it should be possible to find unique hosts of resolved sources out to redshift z=0.2. At higher redshifts, the PTA error boxes are larger, and may contain as many as 100 massive-galaxy interlopers. The number of candidates, however, remains tractable for follow-up searches in upcoming wide-field EM surveys. We develop a toy model to characterize the dynamics and the thermal emission from a geometrically thin, gaseous disc accreting onto a PTA-source SMBH binary. Our model predicts that at optical and infrared frequencies, the source should appear similar to a typical luminous active galactic nucleus (AGN). However, owing to the evacuation of the accretion flow by the binary's tidal torques, the source might have an unusually low soft X-ray luminosity and weak UV and broad optical emission lines, as compared to an AGN powered by a single SMBH with the same total mass. For sources near z=1, the decrement in the rest-frame UV should be observable as an extremely red optical color. These properties would make the PTA sources stand out among optically luminous AGN, and could allow their unique identification.},
  author       = {Tanaka, Takamitsu and Menou, Kristen and Haiman, Zoltán},
  issn         = {0035-8711},
  journal      = {Monthly Notices of the Royal Astronomical Society},
  number       = {1},
  pages        = {705--719},
  publisher    = {Oxford University Press},
  title        = {{Electromagnetic counterparts of supermassive black hole binaries resolved by pulsar timing arrays}},
  doi          = {10.1111/j.1365-2966.2011.20083.x},
  volume       = {420},
  year         = {2012},
}

@article{17705,
  abstract     = {Observations of high-redshift quasars at z>6 imply that supermassive black holes (SMBHs) with masses over a billion solar masses were in place less than 1 Gyr after the Big Bang. If these SMBHs assembled from "seed" BHs left behind by the first stars, then they must have accreted gas at close to the Eddington limit during a large fraction (>50%) of the time. A generic problem with this scenario, however, is that the mass density in million-solar-mass SMBHs at z=6 already exceeds the locally observed SMBH mass density by several orders of magnitude; in order to avoid this overproduction, BH seed formation and growth must become significantly less efficient in less massive protogalaxies, while proceeding uninterrupted in the most massive galaxies that formed first. Using Monte-Carlo realizations of the merger and growth history of BHs, we show that X-rays from the earliest accreting BHs can provide such a feedback mechanism. Our calculations paint a self-consistent picture of black-hole-made climate change, in which the first miniquasars---among them the ancestors of the z>6 quasar SMBHs---globally warm the IGM and suppress the formation and growth of subsequent generations of BHs. We present two specific models with global miniquasar feedback that provide excellent agreement with recent estimates of the z=6 SMBH mass function. For each of these models, we estimate the rate of BH mergers at z>6 that could be detected by the proposed gravitational-wave observatory eLISA/NGO.},
  author       = {Tanaka, Takamitsu and Perna, Rosalba and Haiman, Zoltán},
  issn         = {0035-8711},
  journal      = {Monthly Notices of the Royal Astronomical Society},
  number       = {4},
  pages        = {2974--2987},
  publisher    = {Oxford University Press},
  title        = {{X-ray emission from high-redshift miniquasars: Self-regulating the population of massive black holes through global warming}},
  doi          = {10.1111/j.1365-2966.2012.21539.x},
  volume       = {425},
  year         = {2012},
}

@article{1782,
  abstract     = {Steering a quantum harmonic oscillator state along cyclic trajectories leads to a path-dependent geometric phase. Here we describe its experimental observation in an electronic harmonic oscillator. We use a superconducting qubit as a nonlinear probe of the phase, which is otherwise unobservable due to the linearity of the oscillator. We show that the geometric phase is, for a variety of cyclic paths, proportional to the area enclosed in the quadrature plane. At the transition to the nonadiabatic regime, we study corrections to the phase and dephasing of the qubit caused by qubit-resonator entanglement. In particular, we identify parameters for which this dephasing mechanism is negligible even in the nonadiabatic regime. The demonstrated controllability makes our system a versatile tool to study geometric phases in open quantum systems and to investigate their potential for quantum information processing.},
  author       = {Pechal, M and Berger, Stefan T and Abdumalikov, Abdufarrukh A and Johannes Fink and Mlynek, Jonas A and Steffen, L. Kraig and Wallraff, Andreas and Filipp, Stefan},
  journal      = {Physical Review Letters},
  number       = {17},
  publisher    = {American Physical Society},
  title        = {{Geometric phase and nonadiabatic effects in an electronic harmonic oscillator}},
  doi          = {10.1103/PhysRevLett.108.170401},
  volume       = {108},
  year         = {2012},
}

@article{1783,
  abstract     = {Nonlinearity and entanglement are two important properties by which physical systems can be identified as nonclassical. We study the dynamics of the resonant interaction of up to N=3 two-level systems and a single mode of the electromagnetic field sharing a single excitation dynamically. We observe coherent vacuum Rabi oscillations and their nonlinear √N speedup by tracking the populations of all qubits and the resonator in time. We use quantum state tomography to show explicitly that the dynamics generates maximally entangled states of the W class in a time limited only by the collective interaction rate. We use an entanglement witness and the 3-tangle to characterize the state whose fidelity F=78% is limited in our experiments by crosstalk arising during the simultaneous qubit manipulations which is absent in a sequential approach with F=91%.},
  author       = {Mlynek, Jonas A and Abdumalikov, Abdufarrukh A and Johannes Fink and Steffen, L. Kraig and Baur, Matthias P and Lang, C and Van Loo, Arjan F and Wallraff, Andreas},
  journal      = {Physical Review A - Atomic, Molecular, and Optical Physics},
  number       = {5},
  publisher    = {American Physical Society},
  title        = {{Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics}},
  doi          = {10.1103/PhysRevA.86.053838},
  volume       = {86},
  year         = {2012},
}

@article{1784,
  abstract     = {A localized qubit entangled with a propagating quantum field is well suited to study nonlocal aspects of quantum mechanics and may also provide a channel to communicate between spatially separated nodes in a quantum network. Here, we report the on-demand generation and characterization of Bell-type entangled states between a superconducting qubit and propagating microwave fields composed of zero-, one-, and two-photon Fock states. Using low noise linear amplification and efficient data acquisition we extract all relevant correlations between the qubit and the photon states and demonstrate entanglement with high fidelity.},
  author       = {Eichler, Christopher and Lang, C and Johannes Fink and Govenius, J and Filipp, Stefan and Wallraff, Andreas},
  journal      = {Physical Review Letters},
  number       = {24},
  publisher    = {American Physical Society},
  title        = {{Observation of entanglement between itinerant microwave photons and a superconducting qubit}},
  doi          = {10.1103/PhysRevLett.109.240501},
  volume       = {109},
  year         = {2012},
}

@inproceedings{18000,
  abstract     = {Measurement of electronics and mechanics of single molecules provides a fundamental understanding of conductance as well as bonding at the atomic scale. To study the mechanics at these length scales, we have built a conducting atomic force microscope (AFM) optimized for high displacement and force resolution. Here, we simultaneously measure conductance and force across single Au-molecule-Au junctions in order to obtain complementary information about the electronics and structure in these systems. First we show that single-atom Au contacts, which have a conductance of G0 (2e2/h), have a rupture force of about 1.4 nN, in excellent agreement with previous theoretical and experimental studies. For a series of amine and pyridine linked molecules which are bound to Au electrodes through an Au-N donor-acceptor bond, we observe that the rupture force depends on the backbone chemistry and can range from 0.5 to 0.8 nN. We also study junctions formed with molecules that bind through P-Au and S-Au interactions. We find that both the conductance signatures and junction evolution of covalent S-Au bond (thiolate) and a donor-acceptor S-Au bond (thiol) are dramatically different. Finally, we perform density functional theory based adiabatic molecular junction elongation and rupture calculations which give us an insight into the underlying mechanisms in these experiments.},
  author       = {Aradhya, Sriharsha V. and Frei, Michael and Hybertsen, Mark S. and Venkataraman, Latha},
  booktitle    = {Proceedings of the 2012 Annual Conference on Experimental and Applied Mechanics},
  isbn         = {9781461444350},
  issn         = {2191-5652},
  location     = {Costa Mesa, CA, United States},
  pages        = {75--84},
  publisher    = {Springer Nature},
  title        = {{Simultaneous measurement of force and conductance across single molecule junctions}},
  doi          = {10.1007/978-1-4614-4436-7_12},
  volume       = {6},
  year         = {2012},
}

