[{"abstract":[{"text":"Short-read sequencing technologies have in principle made it feasible to draw detailed inferences about the recent history of any organism. In practice, however, this remains challenging due to the difficulty of genome assembly in most organisms and the lack of statistical methods powerful enough to discriminate among recent, non-equilibrium histories. We address both the assembly and inference challenges. We develop a bioinformatic pipeline for generating outgroup-rooted alignments of orthologous sequence blocks from de novo low-coverage short-read data for a small number of genomes, and show how such sequence blocks can be used to fit explicit models of population divergence and admixture in a likelihood framework. To illustrate our approach, we reconstruct the Pleistocene history of an oak-feeding insect (the oak gallwasp Biorhiza pallida) which, in common with many other taxa, was restricted during Pleistocene ice ages to a longitudinal series of southern refugia spanning theWestern Palaearctic. Our analysis of sequence blocks sampled from a single genome from each of three major glacial refugia reveals support for an unexpected history dominated by recent admixture. Despite the fact that 80% of the genome is affected by admixture during the last glacial cycle, we are able to infer the deeper divergence history of these populations. These inferences are robust to variation in block length, mutation model, and the sampling location of individual genomes within refugia. This combination of de novo assembly and numerical likelihood calculation provides a powerful framework for estimating recent population history that can be applied to any organism without the need for prior genetic resources.","lang":"eng"}],"title":"Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies","publisher":"Dryad","related_material":{"record":[{"relation":"used_in_publication","id":"2170","status":"public"}]},"citation":{"chicago":"Hearn, Jack, Graham Stone, Nicholas H Barton, Konrad Lohse, and Lynsey Bunnefeld. “Data from: Likelihood-Based Inference of Population History from Low Coverage de Novo Genome Assemblies.” Dryad, 2013. <a href=\"https://doi.org/10.5061/dryad.r3r60\">https://doi.org/10.5061/dryad.r3r60</a>.","ieee":"J. Hearn, G. Stone, N. H. Barton, K. Lohse, and L. Bunnefeld, “Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies.” Dryad, 2013.","mla":"Hearn, Jack, et al. <i>Data from: Likelihood-Based Inference of Population History from Low Coverage de Novo Genome Assemblies</i>. Dryad, 2013, doi:<a href=\"https://doi.org/10.5061/dryad.r3r60\">10.5061/dryad.r3r60</a>.","ista":"Hearn J, Stone G, Barton NH, Lohse K, Bunnefeld L. 2013. Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies, Dryad, <a href=\"https://doi.org/10.5061/dryad.r3r60\">10.5061/dryad.r3r60</a>.","ama":"Hearn J, Stone G, Barton NH, Lohse K, Bunnefeld L. Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies. 2013. doi:<a href=\"https://doi.org/10.5061/dryad.r3r60\">10.5061/dryad.r3r60</a>","apa":"Hearn, J., Stone, G., Barton, N. H., Lohse, K., &#38; Bunnefeld, L. (2013). Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies. Dryad. <a href=\"https://doi.org/10.5061/dryad.r3r60\">https://doi.org/10.5061/dryad.r3r60</a>","short":"J. Hearn, G. Stone, N.H. Barton, K. Lohse, L. Bunnefeld, (2013)."},"main_file_link":[{"url":"https://doi.org/10.5061/dryad.r3r60","open_access":"1"}],"date_updated":"2025-09-29T11:38:51Z","status":"public","doi":"10.5061/dryad.r3r60","oa":1,"date_created":"2021-07-30T08:31:22Z","_id":"9754","date_published":"2013-10-01T00:00:00Z","year":"2013","oa_version":"Published Version","day":"01","article_processing_charge":"No","department":[{"_id":"NiBa"}],"author":[{"first_name":"Jack","full_name":"Hearn, Jack","last_name":"Hearn"},{"full_name":"Stone, Graham","last_name":"Stone","first_name":"Graham"},{"orcid":"0000-0002-8548-5240","last_name":"Barton","full_name":"Barton, Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H"},{"full_name":"Lohse, Konrad","last_name":"Lohse","first_name":"Konrad"},{"last_name":"Bunnefeld","full_name":"Bunnefeld, Lynsey","first_name":"Lynsey"}],"type":"research_data_reference","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","month":"10"},{"issue":"17","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1303.0772"}],"citation":{"mla":"Serbyn, Maksym, and Patrick Lee. “Spinon-Phonon Interaction in Algebraic Spin Liquids.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 87, no. 17, American Physical Society, 2013, doi:<a href=\"https://doi.org/10.1103/PhysRevB.87.174424\">10.1103/PhysRevB.87.174424</a>.","ieee":"M. Serbyn and P. Lee, “Spinon-phonon interaction in algebraic spin liquids,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 87, no. 17. American Physical Society, 2013.","chicago":"Serbyn, Maksym, and Patrick Lee. “Spinon-Phonon Interaction in Algebraic Spin Liquids.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2013. <a href=\"https://doi.org/10.1103/PhysRevB.87.174424\">https://doi.org/10.1103/PhysRevB.87.174424</a>.","ista":"Serbyn M, Lee P. 2013. Spinon-phonon interaction in algebraic spin liquids. Physical Review B - Condensed Matter and Materials Physics. 87(17).","apa":"Serbyn, M., &#38; Lee, P. (2013). Spinon-phonon interaction in algebraic spin liquids. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.87.174424\">https://doi.org/10.1103/PhysRevB.87.174424</a>","ama":"Serbyn M, Lee P. Spinon-phonon interaction in algebraic spin liquids. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2013;87(17). doi:<a href=\"https://doi.org/10.1103/PhysRevB.87.174424\">10.1103/PhysRevB.87.174424</a>","short":"M. Serbyn, P. Lee, Physical Review B - Condensed Matter and Materials Physics 87 (2013)."},"quality_controlled":0,"title":"Spinon-phonon interaction in algebraic spin liquids","abstract":[{"lang":"eng","text":"Motivated by a search for experimental probes to access the physics of fractionalized excitations called spinons in spin liquids, we study the interaction of spinons with lattice vibrations. We consider the case of algebraic spin liquid, when spinons have fermionic statistics and a Dirac-like dispersion. We establish the general procedure for deriving spinon-phonon interactions, which is based on symmetry considerations. The procedure is illustrated for four different algebraic spin liquids: π-flux and staggered-flux phases on a square lattice, π-flux phase on a kagome lattice, and zero-flux phase on a honeycomb lattice. Although the low-energy description is similar for all these phases, different underlying symmetry groups lead to a distinct form of spinon-phonon interaction Hamiltonian. The explicit form of the spinon-phonon interaction is used to estimate the attenuation of ultrasound in an algebraic spin liquid. The prospects of the sound attenuation as a probe of spinons are discussed."}],"publisher":"American Physical Society","oa":1,"extern":1,"date_updated":"2021-01-12T08:22:22Z","status":"public","doi":"10.1103/PhysRevB.87.174424","publist_id":"6427","year":"2013","_id":"976","date_published":"2013-05-22T00:00:00Z","date_created":"2018-12-11T11:49:30Z","publication":"Physical Review B - Condensed Matter and Materials Physics","volume":87,"month":"05","author":[{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym","orcid":"0000-0002-2399-5827","full_name":"Maksym Serbyn","last_name":"Serbyn"},{"first_name":"Patrick","full_name":"Lee, Patrick","last_name":"Lee"}],"publication_status":"published","type":"journal_article","acknowledgement":"M. S. is grateful to X.-G. Wen, L. Levitov, M. Metlitski, K. Michaeli, K.-T. Chen, and A. Potter for many useful discussions. We acknowledge support by Grant No. NSF DMR 1104498. We acknowledge the hospitality of KITP, where final stages of this project were completed.","day":"22","intvolume":"        87"},{"oa":1,"date_updated":"2020-07-14T23:06:19Z","status":"public","doi":"10.15479/AT:IST-2013-124-v1-1","citation":{"mla":"Henzinger, Thomas A., et al. <i>Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria, 2013, doi:<a href=\"https://doi.org/10.15479/AT:IST-2013-124-v1-1\">10.15479/AT:IST-2013-124-v1-1</a>.","ieee":"T. A. Henzinger, H. Payer, and A. Sezgin, <i>Replacing competition with cooperation to achieve scalable lock-free FIFO queues </i>. IST Austria, 2013.","chicago":"Henzinger, Thomas A, Hannes Payer, and Ali Sezgin. <i>Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria, 2013. <a href=\"https://doi.org/10.15479/AT:IST-2013-124-v1-1\">https://doi.org/10.15479/AT:IST-2013-124-v1-1</a>.","ista":"Henzinger TA, Payer H, Sezgin A. 2013. Replacing competition with cooperation to achieve scalable lock-free FIFO queues , IST Austria, 23p.","apa":"Henzinger, T. A., Payer, H., &#38; Sezgin, A. (2013). <i>Replacing competition with cooperation to achieve scalable lock-free FIFO queues </i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2013-124-v1-1\">https://doi.org/10.15479/AT:IST-2013-124-v1-1</a>","ama":"Henzinger TA, Payer H, Sezgin A. <i>Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria; 2013. doi:<a href=\"https://doi.org/10.15479/AT:IST-2013-124-v1-1\">10.15479/AT:IST-2013-124-v1-1</a>","short":"T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013."},"publication_identifier":{"issn":["2664-1690"]},"file":[{"date_updated":"2020-07-14T12:47:30Z","checksum":"a219ba4eada6cd62befed52262ee15d4","content_type":"application/pdf","file_id":"6441","file_size":549684,"creator":"dernst","access_level":"open_access","relation":"main_file","date_created":"2019-05-13T14:11:39Z","file_name":"2013_TechRep_Henzinger.pdf"}],"alternative_title":["IST Austria Technical Report"],"title":"Replacing competition with cooperation to achieve scalable lock-free FIFO queues ","abstract":[{"text":"In order to guarantee that each method of a data structure updates the logical state exactly once, al-most all non-blocking implementations employ Compare-And-Swap (CAS) based synchronization. For FIFO  queue  implementations  this  translates  into  concurrent  enqueue  or  dequeue  methods competing among themselves to update the same variable, the tail or the head, respectively, leading to high contention and poor scalability. Recent non-blocking queue implementations try to alleviate high contentionby increasing the number of contention points, all the while using CAS-based synchronization. Furthermore, obtaining a wait-free implementation with competition is achieved by additional synchronization which leads to further degradation of performance.In this paper we formalize the notion of competitiveness of a synchronizing statement which can beused as a measure for the scalability of concurrent implementations.  We present a new queue implementation, the Speculative Pairing (SP) queue, which, as we show, decreases competitiveness by using Fetch-And-Increment (FAI) instead of CAS. We prove that the SP queue is linearizable and lock-free.We also show that replacing CAS with FAI leads to wait-freedom for dequeue methods without an adverse effect on performance.  In fact, our experiments suggest that the SP queue can perform and scale better than the state-of-the-art queue implementations.","lang":"eng"}],"publisher":"IST Austria","has_accepted_license":"1","month":"06","author":[{"orcid":"0000−0002−2985−7724","last_name":"Henzinger","full_name":"Henzinger, Thomas A","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Payer","full_name":"Payer, Hannes","first_name":"Hannes"},{"last_name":"Sezgin","full_name":"Sezgin, Ali","id":"4C7638DA-F248-11E8-B48F-1D18A9856A87","first_name":"Ali"}],"department":[{"_id":"ToHe"}],"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"technical_report","day":"13","ddc":["000","005"],"oa_version":"Published Version","file_date_updated":"2020-07-14T12:47:30Z","page":"23","language":[{"iso":"eng"}],"year":"2013","_id":"6440","pubrep_id":"124","date_published":"2013-06-13T00:00:00Z","date_created":"2019-05-13T14:13:27Z"},{"oa_version":"Published Version","page":"68-111","language":[{"iso":"eng"}],"volume":3,"month":"07","author":[{"orcid":"0000-0002-3242-7020","full_name":"Mondelli, Marco","last_name":"Mondelli","first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425"}],"publication_status":"published","ddc":["510"],"intvolume":"         3","citation":{"short":"M. Mondelli, Image Processing On Line 3 (2013) 68–111.","ama":"Mondelli M. A finite difference scheme for the stack filter simulating the MCM. <i>Image Processing On Line</i>. 2013;3:68-111. doi:<a href=\"https://doi.org/10.5201/ipol.2013.53\">10.5201/ipol.2013.53</a>","apa":"Mondelli, M. (2013). A finite difference scheme for the stack filter simulating the MCM. <i>Image Processing On Line</i>. Image Processing On Line. <a href=\"https://doi.org/10.5201/ipol.2013.53\">https://doi.org/10.5201/ipol.2013.53</a>","ista":"Mondelli M. 2013. A finite difference scheme for the stack filter simulating the MCM. Image Processing On Line. 3, 68–111.","ieee":"M. Mondelli, “A finite difference scheme for the stack filter simulating the MCM,” <i>Image Processing On Line</i>, vol. 3. Image Processing On Line, pp. 68–111, 2013.","chicago":"Mondelli, Marco. “A Finite Difference Scheme for the Stack Filter Simulating the MCM.” <i>Image Processing On Line</i>. Image Processing On Line, 2013. <a href=\"https://doi.org/10.5201/ipol.2013.53\">https://doi.org/10.5201/ipol.2013.53</a>.","mla":"Mondelli, Marco. “A Finite Difference Scheme for the Stack Filter Simulating the MCM.” <i>Image Processing On Line</i>, vol. 3, Image Processing On Line, 2013, pp. 68–111, doi:<a href=\"https://doi.org/10.5201/ipol.2013.53\">10.5201/ipol.2013.53</a>."},"has_accepted_license":"1","extern":"1","file_date_updated":"2020-07-14T12:47:40Z","year":"2013","_id":"6768","date_published":"2013-07-11T00:00:00Z","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","date_created":"2019-08-05T12:30:38Z","publication":"Image Processing On Line","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","day":"11","publication_identifier":{"issn":["2105-1232"]},"file":[{"date_updated":"2020-07-14T12:47:40Z","file_id":"6769","content_type":"application/pdf","checksum":"83b7d429bc248c6c461229d3504fb139","creator":"dernst","file_size":4306158,"access_level":"open_access","relation":"main_file","date_created":"2019-08-05T12:33:40Z","file_name":"2013_IPOL_Mondelli.pdf"}],"title":"A finite difference scheme for the stack filter simulating the MCM","quality_controlled":"1","abstract":[{"text":"The paper presents an algorithm that applies a stack filter simulating the Mean Curvature Motion equation via a finite difference scheme.","lang":"eng"}],"publisher":"Image Processing On Line","oa":1,"article_type":"original","tmp":{"short":"CC BY-NC-SA (4.0)","image":"/images/cc_by_nc_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)"},"status":"public","date_updated":"2021-01-12T08:08:56Z","doi":"10.5201/ipol.2013.53"},{"year":"2013","language":[{"iso":"eng"}],"page":"1050-1056","oa_version":"None","date_created":"2020-01-15T12:18:29Z","date_published":"2013-09-01T00:00:00Z","_id":"7306","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","author":[{"first_name":"Muhammed M.","last_name":"Ottakam Thotiyl","full_name":"Ottakam Thotiyl, Muhammed M."},{"full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"last_name":"Peng","full_name":"Peng, Zhangquan","first_name":"Zhangquan"},{"last_name":"Chen","full_name":"Chen, Yuhui","first_name":"Yuhui"},{"last_name":"Liu","full_name":"Liu, Zheng","first_name":"Zheng"},{"last_name":"Bruce","full_name":"Bruce, Peter G.","first_name":"Peter G."}],"month":"09","publication":"Nature Materials","volume":12,"article_processing_charge":"No","intvolume":"        12","day":"01","publication_identifier":{"issn":["1476-1122","1476-4660"]},"citation":{"apa":"Ottakam Thotiyl, M. M., Freunberger, S. A., Peng, Z., Chen, Y., Liu, Z., &#38; Bruce, P. G. (2013). A stable cathode for the aprotic Li–O2 battery. <i>Nature Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nmat3737\">https://doi.org/10.1038/nmat3737</a>","ama":"Ottakam Thotiyl MM, Freunberger SA, Peng Z, Chen Y, Liu Z, Bruce PG. A stable cathode for the aprotic Li–O2 battery. <i>Nature Materials</i>. 2013;12(11):1050-1056. doi:<a href=\"https://doi.org/10.1038/nmat3737\">10.1038/nmat3737</a>","short":"M.M. Ottakam Thotiyl, S.A. Freunberger, Z. Peng, Y. Chen, Z. Liu, P.G. Bruce, Nature Materials 12 (2013) 1050–1056.","mla":"Ottakam Thotiyl, Muhammed M., et al. “A Stable Cathode for the Aprotic Li–O2 Battery.” <i>Nature Materials</i>, vol. 12, no. 11, Springer Nature, 2013, pp. 1050–56, doi:<a href=\"https://doi.org/10.1038/nmat3737\">10.1038/nmat3737</a>.","ieee":"M. M. Ottakam Thotiyl, S. A. Freunberger, Z. Peng, Y. Chen, Z. Liu, and P. G. Bruce, “A stable cathode for the aprotic Li–O2 battery,” <i>Nature Materials</i>, vol. 12, no. 11. Springer Nature, pp. 1050–1056, 2013.","chicago":"Ottakam Thotiyl, Muhammed M., Stefan Alexander Freunberger, Zhangquan Peng, Yuhui Chen, Zheng Liu, and Peter G. Bruce. “A Stable Cathode for the Aprotic Li–O2 Battery.” <i>Nature Materials</i>. Springer Nature, 2013. <a href=\"https://doi.org/10.1038/nmat3737\">https://doi.org/10.1038/nmat3737</a>.","ista":"Ottakam Thotiyl MM, Freunberger SA, Peng Z, Chen Y, Liu Z, Bruce PG. 2013. A stable cathode for the aprotic Li–O2 battery. Nature Materials. 12(11), 1050–1056."},"issue":"11","publisher":"Springer Nature","abstract":[{"lang":"eng","text":"Rechargeable lithium–air (O2) batteries are receiving intense interest because their high theoretical specific energy exceeds that of lithium-ion batteries. If the Li–O2 battery is ever to succeed, highly reversible formation/decomposition of Li2O2 must take place at the cathode on cycling. However, carbon, used ubiquitously as the basis of the cathode, decomposes during Li2O2 oxidation on charge and actively promotes electrolyte decomposition on cycling. Replacing carbon with a nanoporous gold cathode, when in contact with a dimethyl sulphoxide-based electrolyte, does seem to demonstrate better stability. However, nanoporous gold is not a suitable cathode; its high mass destroys the key advantage of Li–O2 over Li ion (specific energy), it is too expensive and too difficult to fabricate. Identifying a suitable cathode material for the Li–O2 cell is one of the greatest challenges at present. Here we show that a TiC-based cathode reduces greatly side reactions (arising from the electrolyte and electrode degradation) compared with carbon and exhibits better reversible formation/decomposition of Li2O2 even than nanoporous gold (>98% capacity retention after 100 cycles, compared with 95% for nanoporous gold); it is also four times lighter, of lower cost and easier to fabricate. The stability may originate from the presence of TiO2 (along with some TiOC) on the surface of TiC. In contrast to carbon or nanoporous gold, TiC seems to represent a more viable, stable, cathode for aprotic Li–O2 cells."}],"title":"A stable cathode for the aprotic Li–O2 battery","quality_controlled":"1","extern":"1","article_type":"original","doi":"10.1038/nmat3737","status":"public","date_updated":"2021-01-12T08:12:55Z"},{"author":[{"last_name":"Chen","full_name":"Chen, Yuhui","first_name":"Yuhui"},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","first_name":"Stefan Alexander","last_name":"Freunberger","full_name":"Freunberger, Stefan Alexander","orcid":"0000-0003-2902-5319"},{"first_name":"Zhangquan","full_name":"Peng, Zhangquan","last_name":"Peng"},{"last_name":"Fontaine","full_name":"Fontaine, Olivier","first_name":"Olivier"},{"first_name":"Peter G.","full_name":"Bruce, Peter G.","last_name":"Bruce"}],"type":"journal_article","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"05","volume":5,"publication":"Nature Chemistry","day":"12","article_processing_charge":"No","intvolume":"         5","language":[{"iso":"eng"}],"year":"2013","oa_version":"None","page":"489-494","date_created":"2020-01-15T12:18:43Z","_id":"7307","date_published":"2013-05-12T00:00:00Z","article_type":"original","extern":"1","status":"public","doi":"10.1038/nchem.1646","date_updated":"2021-01-12T08:12:56Z","publication_identifier":{"issn":["1755-4330","1755-4349"]},"citation":{"short":"Y. Chen, S.A. Freunberger, Z. Peng, O. Fontaine, P.G. Bruce, Nature Chemistry 5 (2013) 489–494.","ama":"Chen Y, Freunberger SA, Peng Z, Fontaine O, Bruce PG. Charging a Li–O2 battery using a redox mediator. <i>Nature Chemistry</i>. 2013;5(6):489-494. doi:<a href=\"https://doi.org/10.1038/nchem.1646\">10.1038/nchem.1646</a>","apa":"Chen, Y., Freunberger, S. A., Peng, Z., Fontaine, O., &#38; Bruce, P. G. (2013). Charging a Li–O2 battery using a redox mediator. <i>Nature Chemistry</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nchem.1646\">https://doi.org/10.1038/nchem.1646</a>","ista":"Chen Y, Freunberger SA, Peng Z, Fontaine O, Bruce PG. 2013. Charging a Li–O2 battery using a redox mediator. Nature Chemistry. 5(6), 489–494.","ieee":"Y. Chen, S. A. Freunberger, Z. Peng, O. Fontaine, and P. G. Bruce, “Charging a Li–O2 battery using a redox mediator,” <i>Nature Chemistry</i>, vol. 5, no. 6. Springer Nature, pp. 489–494, 2013.","chicago":"Chen, Yuhui, Stefan Alexander Freunberger, Zhangquan Peng, Olivier Fontaine, and Peter G. Bruce. “Charging a Li–O2 Battery Using a Redox Mediator.” <i>Nature Chemistry</i>. Springer Nature, 2013. <a href=\"https://doi.org/10.1038/nchem.1646\">https://doi.org/10.1038/nchem.1646</a>.","mla":"Chen, Yuhui, et al. “Charging a Li–O2 Battery Using a Redox Mediator.” <i>Nature Chemistry</i>, vol. 5, no. 6, Springer Nature, 2013, pp. 489–94, doi:<a href=\"https://doi.org/10.1038/nchem.1646\">10.1038/nchem.1646</a>."},"issue":"6","title":"Charging a Li–O2 battery using a redox mediator","quality_controlled":"1","abstract":[{"lang":"eng","text":"The non-aqueous Li–air (O2) battery is receiving intense interest because its theoretical specific energy exceeds that of Li-ion batteries. Recharging the Li–O2 battery depends on oxidizing solid lithium peroxide (Li2O2), which is formed on discharge within the porous cathode. However, transporting charge between Li2O2 particles and the solid electrode surface is at best very difficult and leads to voltage polarization on charging, even at modest rates. This is a significant problem facing the non-aqueous Li–O2 battery. Here we show that incorporation of a redox mediator, tetrathiafulvalene (TTF), enables recharging at rates that are impossible for the cell in the absence of the mediator. On charging, TTF is oxidized to TTF+ at the cathode surface; TTF+ in turn oxidizes the solid Li2O2, which results in the regeneration of TTF. The mediator acts as an electron–hole transfer agent that permits efficient oxidation of solid Li2O2. The cell with the mediator demonstrated 100 charge/discharge cycles."}],"publisher":"Springer Nature"},{"issue":"2","citation":{"mla":"Chatterjee, Krishnendu, et al. “Code Aware Resource Management.” <i>Formal Methods in System Design</i>, vol. 42, no. 2, Springer, 2013, pp. 142–74, doi:<a href=\"https://doi.org/10.1007/s10703-012-0170-4\">10.1007/s10703-012-0170-4</a>.","chicago":"Chatterjee, Krishnendu, Luca De Alfaro, Marco Faella, Ritankar Majumdar, and Vishwanath Raman. “Code Aware Resource Management.” <i>Formal Methods in System Design</i>. Springer, 2013. <a href=\"https://doi.org/10.1007/s10703-012-0170-4\">https://doi.org/10.1007/s10703-012-0170-4</a>.","ieee":"K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, and V. Raman, “Code aware resource management,” <i>Formal Methods in System Design</i>, vol. 42, no. 2. Springer, pp. 142–174, 2013.","ista":"Chatterjee K, De Alfaro L, Faella M, Majumdar R, Raman V. 2013. Code aware resource management. Formal Methods in System Design. 42(2), 142–174.","apa":"Chatterjee, K., De Alfaro, L., Faella, M., Majumdar, R., &#38; Raman, V. (2013). Code aware resource management. <i>Formal Methods in System Design</i>. Springer. <a href=\"https://doi.org/10.1007/s10703-012-0170-4\">https://doi.org/10.1007/s10703-012-0170-4</a>","ama":"Chatterjee K, De Alfaro L, Faella M, Majumdar R, Raman V. Code aware resource management. <i>Formal Methods in System Design</i>. 2013;42(2):142-174. doi:<a href=\"https://doi.org/10.1007/s10703-012-0170-4\">10.1007/s10703-012-0170-4</a>","short":"K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, V. Raman, Formal Methods in System Design 42 (2013) 142–174."},"acknowledgement":"This research was supported in part by the National Science Foundation CAREER award CCR-0132780, by the ONR grant N00014-02-1-0671, by the National Science Foundation grants CCR-0427202 and CCR-0234690, and by the ARP award TO.030.MM.D.","intvolume":"        42","scopus_import":"1","volume":42,"month":"04","publication_status":"published","isi":1,"department":[{"_id":"KrCh"}],"author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","orcid":"0000-0002-4561-241X"},{"first_name":"Luca","last_name":"De Alfaro","full_name":"De Alfaro, Luca"},{"last_name":"Faella","full_name":"Faella, Marco","first_name":"Marco"},{"first_name":"Ritankar","last_name":"Majumdar","full_name":"Majumdar, Ritankar"},{"last_name":"Raman","full_name":"Raman, Vishwanath","first_name":"Vishwanath"}],"page":"142 - 174","oa_version":"None","language":[{"iso":"eng"}],"date_updated":"2025-09-29T13:24:54Z","status":"public","doi":"10.1007/s10703-012-0170-4","publisher":"Springer","abstract":[{"lang":"eng","text":"Multithreaded programs coordinate their interaction through synchronization primitives like mutexes and semaphores, which are managed by an OS-provided resource manager. We propose algorithms for the automatic construction of code-aware resource managers for multithreaded embedded applications. Such managers use knowledge about the structure and resource usage (mutex and semaphore usage) of the threads to guarantee deadlock freedom and progress while managing resources in an efficient way. Our algorithms compute managers as winning strategies in certain infinite games, and produce a compact code description of these strategies. We have implemented the algorithms in the tool Cynthesis. Given a multithreaded program in C, the tool produces C code implementing a code-aware resource manager. We show in experiments that Cynthesis produces compact resource managers within a few minutes on a set of embedded benchmarks with up to 6 threads. © 2012 Springer Science+Business Media, LLC."}],"title":"Code aware resource management","quality_controlled":"1","article_processing_charge":"No","day":"01","publication":"Formal Methods in System Design","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","date_published":"2013-04-01T00:00:00Z","_id":"3116","external_id":{"isi":["000316677500002"]},"date_created":"2018-12-11T12:01:29Z","year":"2013","publist_id":"3583"},{"type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication":"PNAS","day":"08","article_processing_charge":"No","publist_id":"3387","year":"2013","file_date_updated":"2020-07-14T12:46:06Z","pmid":1,"date_created":"2018-12-11T12:02:19Z","external_id":{"isi":["000325395600021"],"pmid":["24089448"]},"_id":"3261","date_published":"2013-10-08T00:00:00Z","oa":1,"status":"public","doi":"10.1073/pnas.1315642110","date_updated":"2025-09-29T13:24:21Z","title":"Positional information, in bits","quality_controlled":"1","abstract":[{"lang":"eng","text":"Cells in a developing embryo have no direct way of &quot;measuring&quot; their physical position. Through a variety of processes, however, the expression levels of multiple genes come to be correlated with position, and these expression levels thus form a code for &quot;positional information.&quot; We show how to measure this information, in bits, using the gap genes in the Drosophila embryo as an example. Individual genes carry nearly two bits of information, twice as much as expected if the expression patterns consisted only of on/off domains separated by sharp boundaries. Taken together, four gap genes carry enough information to define a cell's location with an error bar of ~1% along the anterior-posterior axis of the embryo. This precision is nearly enough for each cell to have a unique identity, which is the maximum information the system can use, and is nearly constant along the length of the embryo. We argue that this constancy is a signature of optimality in the transmission of information from primary morphogen inputs to the output of the gap gene network."}],"publisher":"National Academy of Sciences","file":[{"content_type":"application/pdf","file_id":"5873","checksum":"ecd859fe52a562193027d428b5524a8d","date_updated":"2020-07-14T12:46:06Z","file_name":"2013_PNAS_Dubuis.pdf","date_created":"2019-01-22T13:53:23Z","relation":"main_file","access_level":"open_access","creator":"dernst","file_size":1670548}],"department":[{"_id":"GaTk"}],"author":[{"last_name":"Dubuis","full_name":"Dubuis, Julien","first_name":"Julien"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gasper","orcid":"0000-0002-6699-1455","full_name":"Tkacik, Gasper","last_name":"Tkacik"},{"first_name":"Eric","full_name":"Wieschaus, Eric","last_name":"Wieschaus"},{"full_name":"Gregor, Thomas","last_name":"Gregor","first_name":"Thomas"},{"last_name":"Bialek","full_name":"Bialek, William","first_name":"William"}],"isi":1,"publication_status":"published","volume":110,"month":"10","scopus_import":"1","intvolume":"       110","ddc":["570"],"language":[{"iso":"eng"}],"oa_version":"Published Version","page":"16301 - 16308","citation":{"ista":"Dubuis J, Tkačik G, Wieschaus E, Gregor T, Bialek W. 2013. Positional information, in bits. PNAS. 110(41), 16301–16308.","chicago":"Dubuis, Julien, Gašper Tkačik, Eric Wieschaus, Thomas Gregor, and William Bialek. “Positional Information, in Bits.” <i>PNAS</i>. National Academy of Sciences, 2013. <a href=\"https://doi.org/10.1073/pnas.1315642110\">https://doi.org/10.1073/pnas.1315642110</a>.","ieee":"J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, and W. Bialek, “Positional information, in bits,” <i>PNAS</i>, vol. 110, no. 41. National Academy of Sciences, pp. 16301–16308, 2013.","mla":"Dubuis, Julien, et al. “Positional Information, in Bits.” <i>PNAS</i>, vol. 110, no. 41, National Academy of Sciences, 2013, pp. 16301–08, doi:<a href=\"https://doi.org/10.1073/pnas.1315642110\">10.1073/pnas.1315642110</a>.","short":"J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013) 16301–16308.","ama":"Dubuis J, Tkačik G, Wieschaus E, Gregor T, Bialek W. Positional information, in bits. <i>PNAS</i>. 2013;110(41):16301-16308. doi:<a href=\"https://doi.org/10.1073/pnas.1315642110\">10.1073/pnas.1315642110</a>","apa":"Dubuis, J., Tkačik, G., Wieschaus, E., Gregor, T., &#38; Bialek, W. (2013). Positional information, in bits. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1315642110\">https://doi.org/10.1073/pnas.1315642110</a>"},"issue":"41","has_accepted_license":"1"},{"title":"CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents","quality_controlled":"1","abstract":[{"lang":"eng","text":"We report a procedure to prepare highly monodisperse copper telluride nanocubes, nanoplates, and nanorods. The procedure is based on the reaction of a copper salt with trioctylphosphine telluride in the presence of lithium bis(trimethylsilyl)amide and oleylamine. CuTe nanocrystals display a strong near-infrared optical absorption associated with localized surface plasmon resonances. We exploit this plasmon resonance for the design of surface-enhanced Raman scattering sensors for unconventional optical probes. Furthermore, we also report here our preliminary analysis of the use of CuTe nanocrystals as cytotoxic and photothermal agents."}],"publisher":"ACS","citation":{"apa":"Li, W., Zamani, R., Rivera Gil, P., Pelaz, B., Ibáñez, M., Cadavid, D., … Cabot, A. (2013). CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents. <i>Journal of the American Chemical Society</i>. ACS. <a href=\"https://doi.org/10.1021/ja401428e\">https://doi.org/10.1021/ja401428e</a>","ama":"Li W, Zamani R, Rivera Gil P, et al. CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents. <i>Journal of the American Chemical Society</i>. 2013;135(19):7098-7101. doi:<a href=\"https://doi.org/10.1021/ja401428e\">10.1021/ja401428e</a>","short":"W. Li, R. Zamani, P. Rivera Gil, B. Pelaz, M. Ibáñez, D. Cadavid, A. Shavel, R. Alvarez Puebla, W. Parak, J. Arbiol, A. Cabot, Journal of the American Chemical Society 135 (2013) 7098–7101.","mla":"Li, Wenhua, et al. “CuTe Nanocrystals: Shape and Size Control, Plasmonic Properties, and Use as SERS Probes and Photothermal Agents.” <i>Journal of the American Chemical Society</i>, vol. 135, no. 19, ACS, 2013, pp. 7098–101, doi:<a href=\"https://doi.org/10.1021/ja401428e\">10.1021/ja401428e</a>.","chicago":"Li, Wenhua, Reza Zamani, Pilar Rivera Gil, Beatriz Pelaz, Maria Ibáñez, Doris Cadavid, Alexey Shavel, et al. “CuTe Nanocrystals: Shape and Size Control, Plasmonic Properties, and Use as SERS Probes and Photothermal Agents.” <i>Journal of the American Chemical Society</i>. ACS, 2013. <a href=\"https://doi.org/10.1021/ja401428e\">https://doi.org/10.1021/ja401428e</a>.","ieee":"W. Li <i>et al.</i>, “CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents,” <i>Journal of the American Chemical Society</i>, vol. 135, no. 19. ACS, pp. 7098–7101, 2013.","ista":"Li W, Zamani R, Rivera Gil P, Pelaz B, Ibáñez M, Cadavid D, Shavel A, Alvarez Puebla R, Parak W, Arbiol J, Cabot A. 2013. CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents. Journal of the American Chemical Society. 135(19), 7098–7101."},"issue":"19","doi":"10.1021/ja401428e","date_updated":"2021-01-12T07:42:33Z","status":"public","article_type":"original","extern":"1","date_created":"2018-12-11T11:45:51Z","_id":"331","date_published":"2013-04-30T00:00:00Z","language":[{"iso":"eng"}],"publist_id":"7521","year":"2013","oa_version":"None","page":"7098 - 7101","day":"30","article_processing_charge":"No","intvolume":"       135","author":[{"full_name":"Li, Wenhua","last_name":"Li","first_name":"Wenhua"},{"last_name":"Zamani","full_name":"Zamani, Reza","first_name":"Reza"},{"full_name":"Rivera Gil, Pilar","last_name":"Rivera Gil","first_name":"Pilar"},{"full_name":"Pelaz, Beatriz","last_name":"Pelaz","first_name":"Beatriz"},{"first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843"},{"first_name":"Doris","last_name":"Cadavid","full_name":"Cadavid, Doris"},{"first_name":"Alexey","last_name":"Shavel","full_name":"Shavel, Alexey"},{"last_name":"Alvarez Puebla","full_name":"Alvarez Puebla, Ramon","first_name":"Ramon"},{"last_name":"Parak","full_name":"Parak, Wolfgang","first_name":"Wolfgang"},{"full_name":"Arbiol, Jordi","last_name":"Arbiol","first_name":"Jordi"},{"last_name":"Cabot","full_name":"Cabot, Andreu","first_name":"Andreu"}],"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":135,"month":"04","publication":"Journal of the American Chemical Society"},{"author":[{"full_name":"Quadrianto, Novi","last_name":"Quadrianto","first_name":"Novi"},{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph","orcid":"0000-0001-8622-7887","last_name":"Lampert","full_name":"Lampert, Christoph"}],"department":[{"_id":"ChLa"}],"type":"encyclopedia_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":3,"publication":"Encyclopedia of Systems Biology","month":"01","day":"01","intvolume":"         3","language":[{"iso":"eng"}],"publist_id":"3314","year":"2013","oa_version":"None","page":"1069 - 1069","date_created":"2018-12-11T12:02:39Z","_id":"3321","editor":[{"first_name":"Werner","full_name":"Dubitzky, Werner","last_name":"Dubitzky"},{"full_name":"Wolkenhauer, Olaf","last_name":"Wolkenhauer","first_name":"Olaf"},{"full_name":"Cho, Kwang","last_name":"Cho","first_name":"Kwang"},{"first_name":"Hiroki","last_name":"Yokota","full_name":"Yokota, Hiroki"}],"date_published":"2013-01-01T00:00:00Z","date_updated":"2021-01-12T07:42:38Z","doi":"10.1007/978-1-4419-9863-7_604","status":"public","citation":{"ista":"Quadrianto N, Lampert C. 2013.Kernel based learning. In: Encyclopedia of Systems Biology. vol. 3, 1069–1069.","mla":"Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” <i>Encyclopedia of Systems Biology</i>, edited by Werner Dubitzky et al., vol. 3, Springer, 2013, pp. 1069–1069, doi:<a href=\"https://doi.org/10.1007/978-1-4419-9863-7_604\">10.1007/978-1-4419-9863-7_604</a>.","ieee":"N. Quadrianto and C. Lampert, “Kernel based learning,” in <i>Encyclopedia of Systems Biology</i>, vol. 3, W. Dubitzky, O. Wolkenhauer, K. Cho, and H. Yokota, Eds. Springer, 2013, pp. 1069–1069.","chicago":"Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” In <i>Encyclopedia of Systems Biology</i>, edited by Werner Dubitzky, Olaf Wolkenhauer, Kwang Cho, and Hiroki Yokota, 3:1069–1069. Springer, 2013. <a href=\"https://doi.org/10.1007/978-1-4419-9863-7_604\">https://doi.org/10.1007/978-1-4419-9863-7_604</a>.","short":"N. Quadrianto, C. Lampert, in:, W. Dubitzky, O. Wolkenhauer, K. Cho, H. Yokota (Eds.), Encyclopedia of Systems Biology, Springer, 2013, pp. 1069–1069.","apa":"Quadrianto, N., &#38; Lampert, C. (2013). Kernel based learning. In W. Dubitzky, O. Wolkenhauer, K. Cho, &#38; H. Yokota (Eds.), <i>Encyclopedia of Systems Biology</i> (Vol. 3, pp. 1069–1069). Springer. <a href=\"https://doi.org/10.1007/978-1-4419-9863-7_604\">https://doi.org/10.1007/978-1-4419-9863-7_604</a>","ama":"Quadrianto N, Lampert C. Kernel based learning. In: Dubitzky W, Wolkenhauer O, Cho K, Yokota H, eds. <i>Encyclopedia of Systems Biology</i>. Vol 3. Springer; 2013:1069-1069. doi:<a href=\"https://doi.org/10.1007/978-1-4419-9863-7_604\">10.1007/978-1-4419-9863-7_604</a>"},"quality_controlled":"1","title":"Kernel based learning","publisher":"Springer"},{"month":"03","publication":"Journal of the American Chemical Society","volume":135,"author":[{"first_name":"Wenhua","full_name":"Li, Wenhua","last_name":"Li"},{"last_name":"Zamani","full_name":"Zamani, Reza","first_name":"Reza"},{"first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843"},{"first_name":"Doris","last_name":"Cadavid","full_name":"Cadavid, Doris"},{"full_name":"Shavel, Alexey","last_name":"Shavel","first_name":"Alexey"},{"first_name":"Joan","last_name":"Morante","full_name":"Morante, Joan"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"last_name":"Cabot","full_name":"Cabot, Andreu","first_name":"Andreu"}],"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","acknowledgement":"The research was supported by the European Regional Development Funds. M.I. thanks the Spanish MICINN for her Ph.D. grant. J.A. and R.Z. also acknowledge MAT2010-15138.","day":"07","intvolume":"       135","article_processing_charge":"No","oa_version":"None","page":"4664 - 4667","language":[{"iso":"eng"}],"publist_id":"7482","year":"2013","_id":"342","date_published":"2013-03-07T00:00:00Z","date_created":"2018-12-11T11:45:55Z","article_type":"original","extern":"1","status":"public","date_updated":"2021-01-12T07:43:21Z","doi":"10.1021/ja400472m","issue":"12","citation":{"short":"W. Li, R. Zamani, M. Ibáñez, D. Cadavid, A. Shavel, J. Morante, J. Arbiol, A. Cabot, Journal of the American Chemical Society 135 (2013) 4664–4667.","ama":"Li W, Zamani R, Ibáñez M, et al. Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes. <i>Journal of the American Chemical Society</i>. 2013;135(12):4664-4667. doi:<a href=\"https://doi.org/10.1021/ja400472m\">10.1021/ja400472m</a>","apa":"Li, W., Zamani, R., Ibáñez, M., Cadavid, D., Shavel, A., Morante, J., … Cabot, A. (2013). Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja400472m\">https://doi.org/10.1021/ja400472m</a>","ista":"Li W, Zamani R, Ibáñez M, Cadavid D, Shavel A, Morante J, Arbiol J, Cabot A. 2013. Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes. Journal of the American Chemical Society. 135(12), 4664–4667.","ieee":"W. Li <i>et al.</i>, “Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes,” <i>Journal of the American Chemical Society</i>, vol. 135, no. 12. American Chemical Society, pp. 4664–4667, 2013.","chicago":"Li, Wenhua, Reza Zamani, Maria Ibáñez, Doris Cadavid, Alexey Shavel, Joan Morante, Jordi Arbiol, and Andreu Cabot. “Metal Ions to Control the Morphology of Semiconductor Nanoparticles: Copper Selenide Nanocubes.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2013. <a href=\"https://doi.org/10.1021/ja400472m\">https://doi.org/10.1021/ja400472m</a>.","mla":"Li, Wenhua, et al. “Metal Ions to Control the Morphology of Semiconductor Nanoparticles: Copper Selenide Nanocubes.” <i>Journal of the American Chemical Society</i>, vol. 135, no. 12, American Chemical Society, 2013, pp. 4664–67, doi:<a href=\"https://doi.org/10.1021/ja400472m\">10.1021/ja400472m</a>."},"quality_controlled":"1","abstract":[{"lang":"eng","text":"Morphology is a key parameter in the design of novel nanocrystals and nanomaterials with controlled functional properties. Here, we demonstrate the potential of foreign metal ions to tune the morphology of colloidal semiconductor nanoparticles. We illustrate the underlying mechanism by preparing copper selenide nanocubes in the presence of Al ions. We further characterize the plasmonic properties of the obtained nanocrystals and demonstrate their potential as a platform to produce cubic nanoparticles with different composition by cation exchange. © 2013 American Chemical Society."}],"title":"Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes","publisher":"American Chemical Society"},{"date_updated":"2021-01-12T07:43:25Z","doi":"10.1021/nn305971v","status":"public","extern":"1","article_type":"original","publisher":"American Chemical Society","title":"Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties","abstract":[{"lang":"eng","text":"The bottom-up assembly of nanocrystals provides access to a three-dimensional composition control at the nanoscale not attainable by any other technology. In particular, colloidal nanoheterostructures, with intrinsic multiphase organization, are especially appealing building blocks for the bottom-up production of nanocomposites. In the present work, we use PbTe-PbS as the model material system and thermoelectricity as the paradigmatic application to investigate the potential of the bottom-up assembly of core-shell nanoparticles to produce functional nanocomposites. With this goal in mind, a rapid, high-yield and scalable colloidal synthetic route to prepare grams of PbTe@PbS core-shell nanoparticles with unprecedented narrow size distributions and exceptional composition control is detailed. PbTe@PbS nanoparticles were used as building blocks for the bottom-up production of PbTe-PbS nanocomposites with tuned composition. In such PbTe-PbS nanocomposites, synergistic nanocrystal doping effects result in up to 10-fold higher electrical conductivities than in pure PbTe and PbS nanomaterials. At the same time, the acoustic impedance mismatch between PbTe and PbS phases and a partial phase alloying provide PbTe-PbS nanocomposites with strongly reduced thermal conductivities. As a result, record thermoelectric figures of merit (ZT) of ∼1.1 were obtained from undoped PbTe and PbS phases at 710 K. These high ZT values prove the potential of the proposed processes to produce efficient functional nanomaterials with programmable properties. © 2013 American Chemical Society."}],"quality_controlled":"1","issue":"3","citation":{"short":"M. Ibáñez, R. Zamani, S. Gorsse, J. Fan, S. Ortega, D. Cadavid, J. Morante, J. Arbiol, A. Cabot, ACS Nano 7 (2013) 2573–2586.","apa":"Ibáñez, M., Zamani, R., Gorsse, S., Fan, J., Ortega, S., Cadavid, D., … Cabot, A. (2013). Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties. <i>ACS Nano</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nn305971v\">https://doi.org/10.1021/nn305971v</a>","ama":"Ibáñez M, Zamani R, Gorsse S, et al. Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties. <i>ACS Nano</i>. 2013;7(3):2573-2586. doi:<a href=\"https://doi.org/10.1021/nn305971v\">10.1021/nn305971v</a>","ista":"Ibáñez M, Zamani R, Gorsse S, Fan J, Ortega S, Cadavid D, Morante J, Arbiol J, Cabot A. 2013. Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties. ACS Nano. 7(3), 2573–2586.","mla":"Ibáñez, Maria, et al. “Core Shell Nanoparticles as Building Blocks for the Bottom-up Production of Functional Nanocomposites: PbTe PbS Thermoelectric Properties.” <i>ACS Nano</i>, vol. 7, no. 3, American Chemical Society, 2013, pp. 2573–86, doi:<a href=\"https://doi.org/10.1021/nn305971v\">10.1021/nn305971v</a>.","ieee":"M. Ibáñez <i>et al.</i>, “Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties,” <i>ACS Nano</i>, vol. 7, no. 3. American Chemical Society, pp. 2573–2586, 2013.","chicago":"Ibáñez, Maria, Reza Zamani, Stéphane Gorsse, Jiandong Fan, Silvia Ortega, Doris Cadavid, Joan Morante, Jordi Arbiol, and Andreu Cabot. “Core Shell Nanoparticles as Building Blocks for the Bottom-up Production of Functional Nanocomposites: PbTe PbS Thermoelectric Properties.” <i>ACS Nano</i>. American Chemical Society, 2013. <a href=\"https://doi.org/10.1021/nn305971v\">https://doi.org/10.1021/nn305971v</a>."},"acknowledgement":"The research was supported by the European Regional Development Funds (ERDF, “FEDER Programa Competitivitat de Catalunya 2007-2013”) and the Spanish MICINN Projects MAT2008-05779, MAT2010-15138, CSD2009-00050, and CSD2009-00013. M.I. thanks the Spanish MICINN for her Ph.D. grant. J.A. and R.Z. also acknowledge Generalitat de Catalunya 2009-SGR-770 and XaRMAE.\r\n\r\nThe authors declare no competing financial interest.","article_processing_charge":"No","intvolume":"         7","day":"28","publication":"ACS Nano","volume":7,"month":"02","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","type":"journal_article","author":[{"full_name":"Ibáñez, Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Reza","full_name":"Zamani, Reza","last_name":"Zamani"},{"first_name":"Stéphane","full_name":"Gorsse, Stéphane","last_name":"Gorsse"},{"first_name":"Jiandong","last_name":"Fan","full_name":"Fan, Jiandong"},{"last_name":"Ortega","full_name":"Ortega, Silvia","first_name":"Silvia"},{"first_name":"Doris","last_name":"Cadavid","full_name":"Cadavid, Doris"},{"first_name":"Joan","last_name":"Morante","full_name":"Morante, Joan"},{"last_name":"Arbiol","full_name":"Arbiol, Jordi","first_name":"Jordi"},{"first_name":"Andreu","full_name":"Cabot, Andreu","last_name":"Cabot"}],"date_published":"2013-02-28T00:00:00Z","_id":"343","date_created":"2018-12-11T11:45:55Z","page":"2573 - 2586","oa_version":"None","year":"2013","publist_id":"7483","language":[{"iso":"eng"}]},{"extern":"1","citation":{"short":"M. Ibáñez, D. Cadavid, U. Anselmi Tamburini, R. Zamani, S. Gorsse, W. Li, A. López, J. Morante, J. Arbiol, A. Cabot, Journal of Materials Chemistry A 1 (2013) 1421–1426.","apa":"Ibáñez, M., Cadavid, D., Anselmi Tamburini, U., Zamani, R., Gorsse, S., Li, W., … Cabot, A. (2013). Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals. <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/C2TA00419D\">https://doi.org/10.1039/C2TA00419D</a>","ama":"Ibáñez M, Cadavid D, Anselmi Tamburini U, et al. Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals. <i>Journal of Materials Chemistry A</i>. 2013;1(4):1421-1426. doi:<a href=\"https://doi.org/10.1039/C2TA00419D\">10.1039/C2TA00419D</a>","ista":"Ibáñez M, Cadavid D, Anselmi Tamburini U, Zamani R, Gorsse S, Li W, López A, Morante J, Arbiol J, Cabot A. 2013. Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals. Journal of Materials Chemistry A. 1(4), 1421–1426.","mla":"Ibáñez, Maria, et al. “Colloidal Synthesis and Thermoelectric Properties of Cu 2SnSe3 Nanocrystals.” <i>Journal of Materials Chemistry A</i>, vol. 1, no. 4, Royal Society of Chemistry, 2013, pp. 1421–26, doi:<a href=\"https://doi.org/10.1039/C2TA00419D\">10.1039/C2TA00419D</a>.","ieee":"M. Ibáñez <i>et al.</i>, “Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals,” <i>Journal of Materials Chemistry A</i>, vol. 1, no. 4. Royal Society of Chemistry, pp. 1421–1426, 2013.","chicago":"Ibáñez, Maria, Doris Cadavid, Umberto Anselmi Tamburini, Reza Zamani, Stéphane Gorsse, Wenhua Li, Antonio López, Joan Morante, Jordi Arbiol, and Andreu Cabot. “Colloidal Synthesis and Thermoelectric Properties of Cu 2SnSe3 Nanocrystals.” <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/C2TA00419D\">https://doi.org/10.1039/C2TA00419D</a>."},"issue":"4","intvolume":"         1","publication_status":"published","author":[{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","full_name":"Ibáñez, Maria"},{"last_name":"Cadavid","full_name":"Cadavid, Doris","first_name":"Doris"},{"last_name":"Anselmi Tamburini","full_name":"Anselmi Tamburini, Umberto","first_name":"Umberto"},{"last_name":"Zamani","full_name":"Zamani, Reza","first_name":"Reza"},{"first_name":"Stéphane","last_name":"Gorsse","full_name":"Gorsse, Stéphane"},{"first_name":"Wenhua","full_name":"Li, Wenhua","last_name":"Li"},{"first_name":"Antonio","full_name":"López, Antonio","last_name":"López"},{"full_name":"Morante, Joan","last_name":"Morante","first_name":"Joan"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"first_name":"Andreu","full_name":"Cabot, Andreu","last_name":"Cabot"}],"volume":1,"month":"01","language":[{"iso":"eng"}],"page":"1421 - 1426","oa_version":"Submitted Version","doi":"10.1039/C2TA00419D","status":"public","date_updated":"2021-01-12T07:43:28Z","article_type":"original","oa":1,"publisher":"Royal Society of Chemistry","title":"Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals","quality_controlled":"1","abstract":[{"lang":"eng","text":"Copper-based selenides are attracting increasing interest due to their outstanding optoelectronic and thermoelectric properties. Herein a novel colloidal synthetic route to prepare Cu2SnSe3 nanocrystals with controlled size, shape and composition is presented. The high yield of the developed procedure allowed its up-scaling to the production of grams of colloidal Cu2SnSe3 nanocrystals. These nanocrystals were used as building blocks for the production of Cu2SnSe3 bulk nanostructured materials by spark plasma sintering. The thermoelectric properties of the prepared nanocrystalline Cu2SnSe3 pellets were characterized in the temperature range from 300 to 720 K. The obtained results show the bottom-up production of nanocrystalline materials from solution-processed nanocrystals to be a potentially advantageous alternative to conventional methods of production of efficient thermoelectric materials."}],"main_file_link":[{"open_access":"1","url":"https://hal.archives-ouvertes.fr/hal-00917429/"}],"article_processing_charge":"No","day":"28","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Journal of Materials Chemistry A","date_created":"2018-12-11T11:45:56Z","date_published":"2013-01-28T00:00:00Z","_id":"344","year":"2013","publist_id":"7484"},{"date_created":"2018-12-11T11:45:58Z","_id":"351","date_published":"2013-10-30T00:00:00Z","publist_id":"7479","language":[{"iso":"eng"}],"year":"2013","oa_version":"None","page":"15982 - 15985","day":"30","article_processing_charge":"No","intvolume":"       135","acknowledgement":"This work was supported by the European Regional Development Funds and the Framework 7 program under project SCALENANO (FP7-NMP-ENERGY-2011-284486). E.S. thanks the Spanish government for the “Ramon y Cajal” fellowship (RYC-2011-09212).","author":[{"first_name":"Alex","full_name":"Carrete, Alex","last_name":"Carrete"},{"first_name":"Alexey","last_name":"Shavel","full_name":"Shavel, Alexey"},{"last_name":"Fontané","full_name":"Fontané, Xavier","first_name":"Xavier"},{"first_name":"Joana","last_name":"Montserrat","full_name":"Montserrat, Joana"},{"first_name":"Jiandong","full_name":"Fan, Jiandong","last_name":"Fan"},{"first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843"},{"first_name":"Edgardo","full_name":"Saucedo, Edgardo","last_name":"Saucedo"},{"last_name":"Pérez Rodríguez","full_name":"Pérez Rodríguez, Alejandro","first_name":"Alejandro"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","volume":135,"month":"10","publication":"Journal of the American Chemical Society","title":"Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells","quality_controlled":"1","abstract":[{"text":"A multistrategy approach to overcome the main challenges of nanoparticle-based solution-processed Cu2ZnSnSe4 thin film solar cells is presented. We developed an efficient ligand exchange strategy, using an antimony salt, to displace organic ligands from the surface of Cu 2ZnSnS4 nanoparticles. An automated pulsed spray-deposition system was used to deposit the nanoparticles into homogeneous and crack-free films with controlled thickness. After annealing the film in a Se-rich atmosphere, carbon-free and crystalline Cu2ZnSnSe4 absorber layers were obtained. Not only was crystallization promoted by the complete removal of organics, but also Sb itself played a critical role. The Sb-assisted crystal growth is associated with the formation of a Sb-based compound at the grain boundaries, which locally reduces the melting point, thus promoting the film diffusion-limited crystallization. ","lang":"eng"}],"publisher":"American Chemical Society","citation":{"ama":"Carrete A, Shavel A, Fontané X, et al. Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells. <i>Journal of the American Chemical Society</i>. 2013;135(43):15982-15985. doi:<a href=\"https://doi.org/10.1021/ja4068639\">10.1021/ja4068639</a>","apa":"Carrete, A., Shavel, A., Fontané, X., Montserrat, J., Fan, J., Ibáñez, M., … Cabot, A. (2013). Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja4068639\">https://doi.org/10.1021/ja4068639</a>","short":"A. Carrete, A. Shavel, X. Fontané, J. Montserrat, J. Fan, M. Ibáñez, E. Saucedo, A. Pérez Rodríguez, A. Cabot, Journal of the American Chemical Society 135 (2013) 15982–15985.","ieee":"A. Carrete <i>et al.</i>, “Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells,” <i>Journal of the American Chemical Society</i>, vol. 135, no. 43. American Chemical Society, pp. 15982–15985, 2013.","chicago":"Carrete, Alex, Alexey Shavel, Xavier Fontané, Joana Montserrat, Jiandong Fan, Maria Ibáñez, Edgardo Saucedo, Alejandro Pérez Rodríguez, and Andreu Cabot. “Antimony-Based Ligand Exchange to Promote Crystallization in Spray-Deposited Cu2ZnSnSe4 Solar Cells.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2013. <a href=\"https://doi.org/10.1021/ja4068639\">https://doi.org/10.1021/ja4068639</a>.","mla":"Carrete, Alex, et al. “Antimony-Based Ligand Exchange to Promote Crystallization in Spray-Deposited Cu2ZnSnSe4 Solar Cells.” <i>Journal of the American Chemical Society</i>, vol. 135, no. 43, American Chemical Society, 2013, pp. 15982–85, doi:<a href=\"https://doi.org/10.1021/ja4068639\">10.1021/ja4068639</a>.","ista":"Carrete A, Shavel A, Fontané X, Montserrat J, Fan J, Ibáñez M, Saucedo E, Pérez Rodríguez A, Cabot A. 2013. Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells. Journal of the American Chemical Society. 135(43), 15982–15985."},"issue":"43","status":"public","doi":"10.1021/ja4068639","date_updated":"2021-01-12T07:43:57Z","article_type":"original","extern":"1"},{"day":"13","article_processing_charge":"No","intvolume":"         1","author":[{"last_name":"Cadavid","full_name":"Cadavid, Doris","first_name":"Doris"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","full_name":"Ibáñez, Maria"},{"full_name":"Shavel, Alexey","last_name":"Shavel","first_name":"Alexey"},{"full_name":"Durá, Oscar","last_name":"Durá","first_name":"Oscar"},{"first_name":"Marco","last_name":"López De La Torre","full_name":"López De La Torre, Marco"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","type":"journal_article","volume":1,"publication":"Journal of Materials Chemistry A","month":"02","date_created":"2018-12-11T11:45:58Z","_id":"352","date_published":"2013-02-13T00:00:00Z","publist_id":"7481","language":[{"iso":"eng"}],"year":"2013","oa_version":"None","page":"4864 - 4870","doi":"10.1039/C3TA01455J","status":"public","date_updated":"2021-01-12T07:44:02Z","article_type":"original","extern":"1","title":"Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te","abstract":[{"lang":"eng","text":"The presence of organic ligands on the surface of colloidal nanoparticles strongly limits their performance in technological applications where charge carrier transfer/transport plays an important role. We use metal salts, matched with the nanoparticle composition, to eliminate the surface organic ligands without introducing extrinsic impurities in the final nanomaterial. The potential of the simple, general and scalable processes presented here is demonstrated by characterizing the thermoelectric properties of nanostructured Ag2Te produced by the bottom up assembly of Ag2Te nanocrystals. A 6-fold increase of the thermoelectric figure of merit of Ag2Te was obtained when organic ligands were displaced by AgNO3. The same procedure can enhance the performance of nanocrystals and nanocrystal-based devices in a broad range of applications, from photovoltaics and thermoelectrics to catalysis."}],"quality_controlled":"1","publisher":"Royal Society of Chemistry","citation":{"ista":"Cadavid D, Ibáñez M, Shavel A, Durá O, López De La Torre M, Cabot A. 2013. Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te. Journal of Materials Chemistry A. 1(15), 4864–4870.","mla":"Cadavid, Doris, et al. “Organic Ligand Displacement by Metal Salts to Enhance Nanoparticle Functionality: Thermoelectric Properties of Ag Inf 2 Inf Te.” <i>Journal of Materials Chemistry A</i>, vol. 1, no. 15, Royal Society of Chemistry, 2013, pp. 4864–70, doi:<a href=\"https://doi.org/10.1039/C3TA01455J\">10.1039/C3TA01455J</a>.","chicago":"Cadavid, Doris, Maria Ibáñez, Alexey Shavel, Oscar Durá, Marco López De La Torre, and Andreu Cabot. “Organic Ligand Displacement by Metal Salts to Enhance Nanoparticle Functionality: Thermoelectric Properties of Ag Inf 2 Inf Te.” <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/C3TA01455J\">https://doi.org/10.1039/C3TA01455J</a>.","ieee":"D. Cadavid, M. Ibáñez, A. Shavel, O. Durá, M. López De La Torre, and A. Cabot, “Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te,” <i>Journal of Materials Chemistry A</i>, vol. 1, no. 15. Royal Society of Chemistry, pp. 4864–4870, 2013.","short":"D. Cadavid, M. Ibáñez, A. Shavel, O. Durá, M. López De La Torre, A. Cabot, Journal of Materials Chemistry A 1 (2013) 4864–4870.","apa":"Cadavid, D., Ibáñez, M., Shavel, A., Durá, O., López De La Torre, M., &#38; Cabot, A. (2013). Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te. <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/C3TA01455J\">https://doi.org/10.1039/C3TA01455J</a>","ama":"Cadavid D, Ibáñez M, Shavel A, Durá O, López De La Torre M, Cabot A. Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te. <i>Journal of Materials Chemistry A</i>. 2013;1(15):4864-4870. doi:<a href=\"https://doi.org/10.1039/C3TA01455J\">10.1039/C3TA01455J</a>"},"issue":"15"},{"status":"public","date_updated":"2021-01-12T07:52:00Z","doi":"10.1039/C3CE41583J","extern":"1","title":"Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties","quality_controlled":"1","abstract":[{"text":"The compositional versatility of I2–II–IV–VI4 tetrahedrally-coordinated compounds allows for accommodating their functional properties to numerous technological applications. Among them, Cu2ZnSnSe4 is an emerging photovoltaic material and Cu2CdSnSe4 displays excellent thermoelectric properties. The third compound of this family, Cu2HgSnSe4, remains relatively unexplored. Herein, a synthetic route to produce Cu2HgSnSe4 nanoparticles with narrow size distribution and controlled composition is presented. Cu2HgSnSe4 nanoparticles were subsequently used as building blocks to produce bulk nanocrystalline materials, whose thermoelectric properties were analyzed. A very preliminary adjustment of the material composition yielded Seebeck coefficients up to 160 μV K−1, electrical conductivities close to 104 S m−1 and thermal conductivities down to 0.5 W m−1 K−1.","lang":"eng"}],"publisher":"Royal Society of Chemistry","citation":{"ieee":"W. Li <i>et al.</i>, “Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties,” <i>CrystEngComm</i>, vol. 44. Royal Society of Chemistry, pp. 8966–8971, 2013.","chicago":"Li, Wenhua, Maria Ibáñez, Reza Zamani, Nuria García Castelló, Grosse Stéphane, Doris Cadavid, Joan Prades, Jordi Arbiol, and Andreu Cabot. “Cu2HgSnSe4 Nanoparticles: Synthesis and Thermoelectric Properties.” <i>CrystEngComm</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/C3CE41583J\">https://doi.org/10.1039/C3CE41583J</a>.","mla":"Li, Wenhua, et al. “Cu2HgSnSe4 Nanoparticles: Synthesis and Thermoelectric Properties.” <i>CrystEngComm</i>, vol. 44, Royal Society of Chemistry, 2013, pp. 8966–71, doi:<a href=\"https://doi.org/10.1039/C3CE41583J\">10.1039/C3CE41583J</a>.","ista":"Li W, Ibáñez M, Zamani R, García Castelló N, Stéphane G, Cadavid D, Prades J, Arbiol J, Cabot A. 2013. Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties. CrystEngComm. 44, 8966–8971.","ama":"Li W, Ibáñez M, Zamani R, et al. Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties. <i>CrystEngComm</i>. 2013;44:8966-8971. doi:<a href=\"https://doi.org/10.1039/C3CE41583J\">10.1039/C3CE41583J</a>","apa":"Li, W., Ibáñez, M., Zamani, R., García Castelló, N., Stéphane, G., Cadavid, D., … Cabot, A. (2013). Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties. <i>CrystEngComm</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/C3CE41583J\">https://doi.org/10.1039/C3CE41583J</a>","short":"W. Li, M. Ibáñez, R. Zamani, N. García Castelló, G. Stéphane, D. Cadavid, J. Prades, J. Arbiol, A. Cabot, CrystEngComm 44 (2013) 8966–8971."},"day":"23","intvolume":"        44","month":"09","volume":44,"publication":"CrystEngComm","author":[{"full_name":"Li, Wenhua","last_name":"Li","first_name":"Wenhua"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","last_name":"Ibáñez"},{"first_name":"Reza","last_name":"Zamani","full_name":"Zamani, Reza"},{"first_name":"Nuria","full_name":"García Castelló, Nuria","last_name":"García Castelló"},{"first_name":"Grosse","full_name":"Stéphane, Grosse","last_name":"Stéphane"},{"first_name":"Doris","full_name":"Cadavid, Doris","last_name":"Cadavid"},{"last_name":"Prades","full_name":"Prades, Joan","first_name":"Joan"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"last_name":"Cabot","full_name":"Cabot, Andreu","first_name":"Andreu"}],"type":"journal_article","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"376","date_published":"2013-09-23T00:00:00Z","date_created":"2018-12-11T11:46:07Z","oa_version":"None","page":"8966 - 8971","language":[{"iso":"eng"}],"publist_id":"7453","year":"2013"},{"extern":"1","doi":"10.1126/science.1239221","status":"public","date_updated":"2021-01-12T07:52:09Z","issue":"6135","citation":{"ista":"Ibáñez M, Cabot A. 2013. All change for nanocrystals. Science. 340(6135), 935–936.","ieee":"M. Ibáñez and A. Cabot, “All change for nanocrystals,” <i>Science</i>, vol. 340, no. 6135. American Association for the Advancement of Science, pp. 935–936, 2013.","chicago":"Ibáñez, Maria, and Andreu Cabot. “All Change for Nanocrystals.” <i>Science</i>. American Association for the Advancement of Science, 2013. <a href=\"https://doi.org/10.1126/science.1239221\">https://doi.org/10.1126/science.1239221</a>.","mla":"Ibáñez, Maria, and Andreu Cabot. “All Change for Nanocrystals.” <i>Science</i>, vol. 340, no. 6135, American Association for the Advancement of Science, 2013, pp. 935–36, doi:<a href=\"https://doi.org/10.1126/science.1239221\">10.1126/science.1239221</a>.","short":"M. Ibáñez, A. Cabot, Science 340 (2013) 935–936.","ama":"Ibáñez M, Cabot A. All change for nanocrystals. <i>Science</i>. 2013;340(6135):935-936. doi:<a href=\"https://doi.org/10.1126/science.1239221\">10.1126/science.1239221</a>","apa":"Ibáñez, M., &#38; Cabot, A. (2013). All change for nanocrystals. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1239221\">https://doi.org/10.1126/science.1239221</a>"},"publisher":"American Association for the Advancement of Science","abstract":[{"lang":"eng","text":"Until recently, to prepare nanocrystals of a new material, scientists searched their shelves for the appropriate molecular precursors, surfactants, and solvents. They then optimized the reaction conditions for the atoms to self-assemble into monodisperse nanocrystals (1). This approach is being replaced by a simpler strategy, in which preformed nanocrystals serve as templates to produce nanoparticles with a different composition through chemical transformation. On page 964 of this issue, Oh et al. (2) report a powerful mechanism that allows the composition of oxide nanoparticles to be transformed in solution and at low temperatures."}],"title":"All change for nanocrystals","publication":"Science","month":"05","volume":340,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","type":"journal_article","author":[{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843"},{"first_name":"Andreu","full_name":"Cabot, Andreu","last_name":"Cabot"}],"intvolume":"       340","article_processing_charge":"No","day":"24","page":"935 - 936","oa_version":"None","year":"2013","publist_id":"7451","language":[{"iso":"eng"}],"date_published":"2013-05-24T00:00:00Z","_id":"378","date_created":"2018-12-11T11:46:08Z"},{"extern":1,"status":"public","doi":"10.1242/dev.092726","date_updated":"2021-01-12T06:52:47Z","citation":{"short":"N. Kahane, V. Ribes, A. Kicheva, J. Briscoe, C. Kalcheim, Development 140 (2013) 1740–1750.","ama":"Kahane N, Ribes V, Kicheva A, Briscoe J, Kalcheim C. The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling. <i>Development</i>. 2013;140(8):1740-1750. doi:<a href=\"https://doi.org/10.1242/dev.092726\">10.1242/dev.092726</a>","apa":"Kahane, N., Ribes, V., Kicheva, A., Briscoe, J., &#38; Kalcheim, C. (2013). The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.092726\">https://doi.org/10.1242/dev.092726</a>","ista":"Kahane N, Ribes V, Kicheva A, Briscoe J, Kalcheim C. 2013. The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling. Development. 140(8), 1740–1750.","ieee":"N. Kahane, V. Ribes, A. Kicheva, J. Briscoe, and C. Kalcheim, “The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling,” <i>Development</i>, vol. 140, no. 8. Company of Biologists, pp. 1740–1750, 2013.","chicago":"Kahane, Nitza, Vanessa Ribes, Anna Kicheva, James Briscoe, and Chaya Kalcheim. “The Transition from Differentiation to Growth during Dermomyotome-Derived Myogenesis Depends on Temporally Restricted Hedgehog Signaling.” <i>Development</i>. Company of Biologists, 2013. <a href=\"https://doi.org/10.1242/dev.092726\">https://doi.org/10.1242/dev.092726</a>.","mla":"Kahane, Nitza, et al. “The Transition from Differentiation to Growth during Dermomyotome-Derived Myogenesis Depends on Temporally Restricted Hedgehog Signaling.” <i>Development</i>, vol. 140, no. 8, Company of Biologists, 2013, pp. 1740–50, doi:<a href=\"https://doi.org/10.1242/dev.092726\">10.1242/dev.092726</a>."},"issue":"8","abstract":[{"lang":"eng","text":"The development of a functional tissue requires coordination of the amplification of progenitors and their differentiation into specific cell types. The molecular basis for this coordination during myotome ontogeny is not well understood. Dermomytome progenitors that colonize the myotome first acquire myocyte identity and subsequently proliferate as Pax7-expressing progenitors before undergoing terminal differentiation. We show that the dynamics of sonic hedgehog (Shh) signaling is crucial for this transition in both avian and mouse embryos. Initially, Shh ligand emanating from notochord/floor plate reaches the dermomyotome, where it both maintains the proliferation of dermomyotome cells and promotes myogenic differentiation of progenitors that colonized the myotome. Interfering with Shh signaling at this stage produces small myotomes and accumulation of Pax7-expressing progenitors. An in vivo reporter of Shh activity combined with mouse genetics revealed the existence of both activator and repressor Shh activities operating on distinct subsets of cells during the epaxial myotomal maturation. In contrast to observations in mice, in avians Shh promotes the differentiation of both epaxial and hypaxial myotome domains. Subsequently, myogenic progenitors become refractory to Shh; this is likely to occur at the level of, or upstream of, smoothened signaling. The end of responsiveness to Shh coincides with, and is thus likely to enable, the transition into the growth phase of the myotome."}],"title":"The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling","quality_controlled":0,"publisher":"Company of Biologists","author":[{"first_name":"Nitza","last_name":"Kahane","full_name":"Kahane, Nitza"},{"full_name":"Ribes, Vanessa","last_name":"Ribes","first_name":"Vanessa"},{"full_name":"Anna Kicheva","last_name":"Kicheva","orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","first_name":"Anna"},{"first_name":"James","full_name":"Briscoe, James","last_name":"Briscoe"},{"full_name":"Kalcheim, Chaya","last_name":"Kalcheim","first_name":"Chaya"}],"publication_status":"published","type":"journal_article","month":"04","volume":140,"publication":"Development","day":"18","intvolume":"       140","acknowledgement":"This study was supported by grants from the Israel Science Foundation (ISF) [11/09 to C.K.]; the Association Francaise contre les Myopathies (AFM) [15642 to C.K.]; the German Research Foundation (DFG) [UN 34/27-1 to C.K.]; the UK Medical Research Council (MRC) [U117560541 to J.B. and A.K.]; Fondation Pour la Recherche Médicale (FRM) (post-doctoral fellowship to V.R.). Deposited in PMC for release after 6 months","publist_id":"5402","year":"2013","page":"1740 - 1750","date_created":"2018-12-11T11:53:41Z","_id":"1726","date_published":"2013-04-18T00:00:00Z"},{"page":"387 - 403","year":"2013","publist_id":"5401","date_published":"2013-05-01T00:00:00Z","_id":"1727","date_created":"2018-12-11T11:53:41Z","volume":8,"publication":"Cold Spring Harbor Protocols","month":"05","publication_status":"published","type":"journal_article","author":[{"orcid":"0000-0003-4509-4998","last_name":"Kicheva","full_name":"Anna Kicheva","first_name":"Anna","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Laurent","last_name":"Holtzer","full_name":"Holtzer, Laurent"},{"first_name":"Ortrud","full_name":"Wartlick, Ortrud","last_name":"Wartlick"},{"full_name":"Schmidt, Thomas S","last_name":"Schmidt","first_name":"Thomas"},{"full_name":"González-Gaitán, Marcos A","last_name":"González Gaitán","first_name":"Marcos"}],"intvolume":"         8","day":"01","issue":"5","citation":{"mla":"Kicheva, Anna, et al. “Quantitative Imaging of Morphogen Gradients in Drosophila Imaginal Discs.” <i>Cold Spring Harbor Protocols</i>, vol. 8, no. 5, Cold Spring Harbor Laboratory Press, 2013, pp. 387–403, doi:<a href=\"https://doi.org/10.1101/pdb.top074237\">10.1101/pdb.top074237</a>.","chicago":"Kicheva, Anna, Laurent Holtzer, Ortrud Wartlick, Thomas Schmidt, and Marcos González Gaitán. “Quantitative Imaging of Morphogen Gradients in Drosophila Imaginal Discs.” <i>Cold Spring Harbor Protocols</i>. Cold Spring Harbor Laboratory Press, 2013. <a href=\"https://doi.org/10.1101/pdb.top074237\">https://doi.org/10.1101/pdb.top074237</a>.","ieee":"A. Kicheva, L. Holtzer, O. Wartlick, T. Schmidt, and M. González Gaitán, “Quantitative imaging of morphogen gradients in drosophila imaginal discs,” <i>Cold Spring Harbor Protocols</i>, vol. 8, no. 5. Cold Spring Harbor Laboratory Press, pp. 387–403, 2013.","ista":"Kicheva A, Holtzer L, Wartlick O, Schmidt T, González Gaitán M. 2013. Quantitative imaging of morphogen gradients in drosophila imaginal discs. Cold Spring Harbor Protocols. 8(5), 387–403.","apa":"Kicheva, A., Holtzer, L., Wartlick, O., Schmidt, T., &#38; González Gaitán, M. (2013). Quantitative imaging of morphogen gradients in drosophila imaginal discs. <i>Cold Spring Harbor Protocols</i>. Cold Spring Harbor Laboratory Press. <a href=\"https://doi.org/10.1101/pdb.top074237\">https://doi.org/10.1101/pdb.top074237</a>","ama":"Kicheva A, Holtzer L, Wartlick O, Schmidt T, González Gaitán M. Quantitative imaging of morphogen gradients in drosophila imaginal discs. <i>Cold Spring Harbor Protocols</i>. 2013;8(5):387-403. doi:<a href=\"https://doi.org/10.1101/pdb.top074237\">10.1101/pdb.top074237</a>","short":"A. Kicheva, L. Holtzer, O. Wartlick, T. Schmidt, M. González Gaitán, Cold Spring Harbor Protocols 8 (2013) 387–403."},"publisher":"Cold Spring Harbor Laboratory Press","title":"Quantitative imaging of morphogen gradients in drosophila imaginal discs","quality_controlled":0,"abstract":[{"lang":"eng","text":"Cells at different positions in a developing tissue receive different concentrations of signaling molecules, called morphogens, and this influences their cell fate. Morphogen concentration gradients have been proposed to control patterning as well as growth in many developing tissues. Some outstanding questions about tissue patterning by morphogen gradients are the following: What are the mechanisms that regulate gradient formation and shape? Is the positional information encoded in the gradient sufficiently precise to determine the positions of target gene domain boundaries? What are the temporal dynamics of gradients and how do they relate to patterning and growth? These questions are inherently quantitative in nature and addressing them requires measuring morphogen concentrations in cells, levels of downstream signaling activity, and kinetics of morphogen transport. Here we first present methods for quantifying morphogen gradient shape in which the measurements can be calibrated to reflect actual morphogen concentrations. We then discuss using fluorescence recovery after photobleaching to study the kinetics of morphogen transport at the tissue level. Finally, we present particle tracking as a method to study morphogen intracellular trafficking."}],"extern":1,"status":"public","date_updated":"2021-01-12T06:52:47Z","doi":"10.1101/pdb.top074237"},{"quality_controlled":0,"abstract":[{"lang":"eng","text":"We report an electric-field-induced giant modulation of the hole g factor in SiGe nanocrystals. The observed effect is ascribed to a so-far overlooked contribution to the g factor that stems from the mixing between heavy- and light-hole wave functions. We show that the relative displacement between the confined heavy- and light-hole states, occurring upon application of the electric field, alters their mixing strength leading to a strong nonmonotonic modulation of the g factor."}],"title":"Nature of tunable hole g factors in quantum dots","publisher":"American Physical Society","issue":"4","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1208.0476"}],"citation":{"ieee":"N. Ares <i>et al.</i>, “Nature of tunable hole g factors in quantum dots,” <i>Physical Review Letters</i>, vol. 110, no. 4. American Physical Society, 2013.","chicago":"Ares, Natalia, Vitaly Golovach, Georgios Katsaros, Mathieu Stoffel, Frank Fournel, Leonid Glazman, Oliver Schmidt, and Silvano De Franceschi. “Nature of Tunable Hole g Factors in Quantum Dots.” <i>Physical Review Letters</i>. American Physical Society, 2013. <a href=\"https://doi.org/10.1103/PhysRevLett.110.046602\">https://doi.org/10.1103/PhysRevLett.110.046602</a>.","mla":"Ares, Natalia, et al. “Nature of Tunable Hole g Factors in Quantum Dots.” <i>Physical Review Letters</i>, vol. 110, no. 4, American Physical Society, 2013, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.110.046602\">10.1103/PhysRevLett.110.046602</a>.","ista":"Ares N, Golovach V, Katsaros G, Stoffel M, Fournel F, Glazman L, Schmidt O, De Franceschi S. 2013. Nature of tunable hole g factors in quantum dots. Physical Review Letters. 110(4).","ama":"Ares N, Golovach V, Katsaros G, et al. Nature of tunable hole g factors in quantum dots. <i>Physical Review Letters</i>. 2013;110(4). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.110.046602\">10.1103/PhysRevLett.110.046602</a>","apa":"Ares, N., Golovach, V., Katsaros, G., Stoffel, M., Fournel, F., Glazman, L., … De Franceschi, S. (2013). Nature of tunable hole g factors in quantum dots. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.110.046602\">https://doi.org/10.1103/PhysRevLett.110.046602</a>","short":"N. Ares, V. Golovach, G. Katsaros, M. Stoffel, F. Fournel, L. Glazman, O. Schmidt, S. De Franceschi, Physical Review Letters 110 (2013)."},"status":"public","date_updated":"2021-01-12T06:53:01Z","doi":"10.1103/PhysRevLett.110.046602","oa":1,"extern":1,"_id":"1759","date_published":"2013-01-23T00:00:00Z","date_created":"2018-12-11T11:53:51Z","publist_id":"5365","year":"2013","acknowledgement":"We acknowledge financial support from the Nanosciences Foundation (Grenoble, France), DOE under Contract No. DEFG02-08ER46482 (Yale), the Agence Nationale de la Recherche, and the European Starting Grant. G. K. acknowledges support from the European Commission via a Marie Curie Carrer Integration Grant and the FWF for a Lise-Meitner Fellowship","day":"23","intvolume":"       110","volume":110,"publication":"Physical Review Letters","month":"01","author":[{"full_name":"Ares, Natalia","last_name":"Ares","first_name":"Natalia"},{"first_name":"Vitaly","full_name":"Golovach, Vitaly N","last_name":"Golovach"},{"full_name":"Georgios Katsaros","last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios"},{"first_name":"Mathieu","full_name":"Stoffel, Mathieu","last_name":"Stoffel"},{"last_name":"Fournel","full_name":"Fournel, Frank","first_name":"Frank"},{"first_name":"Leonid","last_name":"Glazman","full_name":"Glazman, Leonid I"},{"first_name":"Oliver","last_name":"Schmidt","full_name":"Schmidt, Oliver G"},{"first_name":"Silvano","full_name":"De Franceschi, Silvano","last_name":"De Franceschi"}],"publication_status":"published","type":"journal_article"}]