[{"editor":[{"first_name":"Paolo","last_name":"Baldan","full_name":"Baldan, Paolo"},{"first_name":"Daniele","full_name":"Gorla, Daniele","last_name":"Gorla"}],"abstract":[{"lang":"eng","text":"We study two-player concurrent games on finite-state graphs played for an infinite number of rounds, where in each round, the two players (player 1 and player 2) choose their moves independently and simultaneously; the current state and the two moves determine the successor state. The objectives are ω-regular winning conditions specified as parity objectives. We consider the qualitative analysis problems: the computation of the almost-sure and limit-sure winning set of states, where player 1 can ensure to win with probability 1 and with probability arbitrarily close to 1, respectively. In general the almost-sure and limit-sure winning strategies require both infinite-memory as well as infinite-precision (to describe probabilities). While the qualitative analysis problem for concurrent parity games with infinite-memory, infinite-precision randomized strategies was studied before, we study the bounded-rationality problem for qualitative analysis of concurrent parity games, where the strategy set for player 1 is restricted to bounded-resource strategies. In terms of precision, strategies can be deterministic, uniform, finite-precision, or infinite-precision; and in terms of memory, strategies can be memoryless, finite-memory, or infinite-memory. We present a precise and complete characterization of the qualitative winning sets for all combinations of classes of strategies. In particular, we show that uniform memoryless strategies are as powerful as finite-precision infinite-memory strategies, and infinite-precision memoryless strategies are as powerful as infinite-precision finite-memory strategies. We show that the winning sets can be computed in (n2d+3) time, where n is the size of the game structure and 2d is the number of priorities (or colors), and our algorithms are symbolic. The membership problem of whether a state belongs to a winning set can be decided in NP ∩ coNP. Our symbolic algorithms are based on a characterization of the winning sets as μ-calculus formulas, however, our μ-calculus formulas are crucially different from the ones for concurrent parity games (without bounded rationality); and our memoryless witness strategy constructions are significantly different from the infinite-memory witness strategy constructions for concurrent parity games."}],"conference":{"start_date":"2014-09-02","location":"Rome, Italy","name":"CONCUR: Concurrency Theory","end_date":"2014-09-05"},"alternative_title":["LNCS"],"corr_author":"1","day":"01","scopus_import":"1","date_created":"2018-12-11T11:55:27Z","citation":{"ista":"Chatterjee K. 2014. Qualitative concurrent parity games: Bounded rationality. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). CONCUR: Concurrency Theory, LNCS, vol. 8704, 544–559.","apa":"Chatterjee, K. (2014). Qualitative concurrent parity games: Bounded rationality. In P. Baldan & D. Gorla (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 8704, pp. 544–559). Rome, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/978-3-662-44584-6_37","mla":"Chatterjee, Krishnendu. “Qualitative Concurrent Parity Games: Bounded Rationality.” Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), edited by Paolo Baldan and Daniele Gorla, vol. 8704, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014, pp. 544–59, doi:10.1007/978-3-662-44584-6_37.","chicago":"Chatterjee, Krishnendu. “Qualitative Concurrent Parity Games: Bounded Rationality.” In Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), edited by Paolo Baldan and Daniele Gorla, 8704:544–59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014. https://doi.org/10.1007/978-3-662-44584-6_37.","ieee":"K. Chatterjee, “Qualitative concurrent parity games: Bounded rationality,” in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Rome, Italy, 2014, vol. 8704, pp. 544–559.","short":"K. Chatterjee, in:, P. Baldan, D. Gorla (Eds.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014, pp. 544–559.","ama":"Chatterjee K. Qualitative concurrent parity games: Bounded rationality. In: Baldan P, Gorla D, eds. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8704. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2014:544-559. doi:10.1007/978-3-662-44584-6_37"},"quality_controlled":"1","doi":"10.1007/978-3-662-44584-6_37","intvolume":" 8704","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"3354"}]},"publication":"Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)","language":[{"iso":"eng"}],"page":"544 - 559","year":"2014","status":"public","author":[{"last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","first_name":"Krishnendu"}],"publist_id":"4992","volume":8704,"date_published":"2014-09-01T00:00:00Z","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","title":"Qualitative concurrent parity games: Bounded rationality","department":[{"_id":"KrCh"}],"date_updated":"2025-09-30T09:05:12Z","ec_funded":1,"_id":"2054","oa_version":"None","type":"conference","publication_status":"published","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","month":"09","project":[{"_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","call_identifier":"FWF","grant_number":"P 23499-N23"},{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S11407","name":"Game Theory"},{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}]},{"isi":1,"_id":"2056","title":"Markov chain aggregation and its applications to combinatorial reaction networks","department":[{"_id":"CaGu"},{"_id":"ToHe"}],"date_updated":"2025-09-29T11:50:22Z","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1303.4532"}],"month":"11","arxiv":1,"publisher":"Springer","type":"journal_article","publication_status":"published","oa_version":"Submitted Version","scopus_import":"1","date_created":"2018-12-11T11:55:28Z","citation":{"ieee":"A. Ganguly, T. Petrov, and H. Koeppl, “Markov chain aggregation and its applications to combinatorial reaction networks,” Journal of Mathematical Biology, vol. 69, no. 3. Springer, pp. 767–797, 2014.","short":"A. Ganguly, T. Petrov, H. Koeppl, Journal of Mathematical Biology 69 (2014) 767–797.","ama":"Ganguly A, Petrov T, Koeppl H. Markov chain aggregation and its applications to combinatorial reaction networks. Journal of Mathematical Biology. 2014;69(3):767-797. doi:10.1007/s00285-013-0738-7","ista":"Ganguly A, Petrov T, Koeppl H. 2014. Markov chain aggregation and its applications to combinatorial reaction networks. Journal of Mathematical Biology. 69(3), 767–797.","mla":"Ganguly, Arnab, et al. “Markov Chain Aggregation and Its Applications to Combinatorial Reaction Networks.” Journal of Mathematical Biology, vol. 69, no. 3, Springer, 2014, pp. 767–97, doi:10.1007/s00285-013-0738-7.","apa":"Ganguly, A., Petrov, T., & Koeppl, H. (2014). Markov chain aggregation and its applications to combinatorial reaction networks. Journal of Mathematical Biology. Springer. https://doi.org/10.1007/s00285-013-0738-7","chicago":"Ganguly, Arnab, Tatjana Petrov, and Heinz Koeppl. “Markov Chain Aggregation and Its Applications to Combinatorial Reaction Networks.” Journal of Mathematical Biology. Springer, 2014. https://doi.org/10.1007/s00285-013-0738-7."},"quality_controlled":"1","day":"20","intvolume":" 69","doi":"10.1007/s00285-013-0738-7","abstract":[{"text":"We consider a continuous-time Markov chain (CTMC) whose state space is partitioned into aggregates, and each aggregate is assigned a probability measure. A sufficient condition for defining a CTMC over the aggregates is presented as a variant of weak lumpability, which also characterizes that the measure over the original process can be recovered from that of the aggregated one. We show how the applicability of de-aggregation depends on the initial distribution. The application section is devoted to illustrate how the developed theory aids in reducing CTMC models of biochemical systems particularly in connection to protein-protein interactions. We assume that the model is written by a biologist in form of site-graph-rewrite rules. Site-graph-rewrite rules compactly express that, often, only a local context of a protein (instead of a full molecular species) needs to be in a certain configuration in order to trigger a reaction event. This observation leads to suitable aggregate Markov chains with smaller state spaces, thereby providing sufficient reduction in computational complexity. This is further exemplified in two case studies: simple unbounded polymerization and early EGFR/insulin crosstalk.","lang":"eng"}],"oa":1,"article_processing_charge":"No","acknowledgement":"T. Petrov is supported by SystemsX.ch—the Swiss Inititative for Systems Biology.","status":"public","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2014-11-20T00:00:00Z","author":[{"first_name":"Arnab","full_name":"Ganguly, Arnab","last_name":"Ganguly"},{"full_name":"Petrov, Tatjana","orcid":"0000-0002-9041-0905","last_name":"Petrov","id":"3D5811FC-F248-11E8-B48F-1D18A9856A87","first_name":"Tatjana"},{"full_name":"Koeppl, Heinz","last_name":"Koeppl","first_name":"Heinz"}],"external_id":{"isi":["000340588700008"],"arxiv":["1303.4532"]},"publist_id":"4990","volume":69,"publication":"Journal of Mathematical Biology","page":"767 - 797","language":[{"iso":"eng"}],"issue":"3","year":"2014"},{"date_updated":"2021-01-12T06:55:01Z","department":[{"_id":"ChLa"}],"title":"Majority vote of diverse classifiers for late fusion","_id":"2057","ec_funded":1,"oa_version":"Preprint","type":"conference","publication_status":"published","publisher":"Springer","arxiv":1,"project":[{"call_identifier":"FP7","grant_number":"308036","name":"Lifelong Learning of Visual Scene Understanding","_id":"2532554C-B435-11E9-9278-68D0E5697425"}],"month":"01","main_file_link":[{"url":"http://arxiv.org/abs/1404.7796","open_access":"1"}],"conference":{"start_date":"2014-08-20","name":"IAPR: International Workshop on Structural, Syntactic, and Statistical Pattern Recognition","location":"Joensuu, Finland","end_date":"2014-08-22"},"oa":1,"abstract":[{"lang":"eng","text":"In the past few years, a lot of attention has been devoted to multimedia indexing by fusing multimodal informations. Two kinds of fusion schemes are generally considered: The early fusion and the late fusion. We focus on late classifier fusion, where one combines the scores of each modality at the decision level. To tackle this problem, we investigate a recent and elegant well-founded quadratic program named MinCq coming from the machine learning PAC-Bayesian theory. MinCq looks for the weighted combination, over a set of real-valued functions seen as voters, leading to the lowest misclassification rate, while maximizing the voters’ diversity. We propose an extension of MinCq tailored to multimedia indexing. Our method is based on an order-preserving pairwise loss adapted to ranking that allows us to improve Mean Averaged Precision measure while taking into account the diversity of the voters that we want to fuse. We provide evidence that this method is naturally adapted to late fusion procedures and confirm the good behavior of our approach on the challenging PASCAL VOC’07 benchmark."}],"doi":"10.1007/978-3-662-44415-3_16","intvolume":" 8621","day":"01","alternative_title":["LNCS"],"quality_controlled":"1","date_created":"2018-12-11T11:55:28Z","citation":{"apa":"Morvant, E., Habrard, A., & Ayache, S. (2014). Majority vote of diverse classifiers for late fusion. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 8621, pp. 153–162). Joensuu, Finland: Springer. https://doi.org/10.1007/978-3-662-44415-3_16","chicago":"Morvant, Emilie, Amaury Habrard, and Stéphane Ayache. “Majority Vote of Diverse Classifiers for Late Fusion.” In Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8621:153–62. Springer, 2014. https://doi.org/10.1007/978-3-662-44415-3_16.","mla":"Morvant, Emilie, et al. “Majority Vote of Diverse Classifiers for Late Fusion.” Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 8621, Springer, 2014, pp. 153–62, doi:10.1007/978-3-662-44415-3_16.","ista":"Morvant E, Habrard A, Ayache S. 2014. Majority vote of diverse classifiers for late fusion. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). IAPR: International Workshop on Structural, Syntactic, and Statistical Pattern Recognition, LNCS, vol. 8621, 153–162.","ama":"Morvant E, Habrard A, Ayache S. Majority vote of diverse classifiers for late fusion. In: Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8621. Springer; 2014:153-162. doi:10.1007/978-3-662-44415-3_16","short":"E. Morvant, A. Habrard, S. Ayache, in:, Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer, 2014, pp. 153–162.","ieee":"E. Morvant, A. Habrard, and S. Ayache, “Majority vote of diverse classifiers for late fusion,” in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Joensuu, Finland, 2014, vol. 8621, pp. 153–162."},"scopus_import":1,"year":"2014","publication":"Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)","page":"153 - 162","language":[{"iso":"eng"}],"volume":8621,"publist_id":"4989","author":[{"full_name":"Morvant, Emilie","orcid":"0000-0002-8301-7240","id":"4BAC2A72-F248-11E8-B48F-1D18A9856A87","last_name":"Morvant","first_name":"Emilie"},{"first_name":"Amaury","full_name":"Habrard, Amaury","last_name":"Habrard"},{"first_name":"Stéphane","full_name":"Ayache, Stéphane","last_name":"Ayache"}],"external_id":{"arxiv":["1404.7796"]},"date_published":"2014-01-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public"},{"status":"public","external_id":{"isi":["000340000100104"]},"author":[{"first_name":"Karthik","full_name":"Raveendran, Karthik","last_name":"Raveendran"},{"last_name":"Wojtan","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","full_name":"Wojtan, Christopher J","orcid":"0000-0001-6646-5546","first_name":"Christopher J"},{"last_name":"Thuerey","full_name":"Thuerey, Nils","first_name":"Nils"},{"first_name":"Greg","full_name":"Türk, Greg","last_name":"Türk"}],"publist_id":"4988","volume":33,"pubrep_id":"606","file":[{"date_updated":"2020-07-14T12:45:27Z","file_id":"4688","creator":"system","relation":"main_file","file_name":"IST-2016-606-v1+1_BlendingLiquids-Preprint.pdf","file_size":8387384,"checksum":"1752760a2e71e254537f31c0d10d9c6c","date_created":"2018-12-12T10:08:27Z","access_level":"open_access","content_type":"application/pdf"}],"date_published":"2014-07-01T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"4","publication":"ACM Transactions on Graphics","language":[{"iso":"eng"}],"year":"2014","day":"01","scopus_import":"1","quality_controlled":"1","citation":{"chicago":"Raveendran, Karthik, Chris Wojtan, Nils Thuerey, and Greg Türk. “Blending Liquids.” In ACM Transactions on Graphics, Vol. 33. ACM, 2014. https://doi.org/10.1145/2601097.2601126.","apa":"Raveendran, K., Wojtan, C., Thuerey, N., & Türk, G. (2014). Blending liquids. In ACM Transactions on Graphics (Vol. 33). Vancouver, Canada: ACM. https://doi.org/10.1145/2601097.2601126","mla":"Raveendran, Karthik, et al. “Blending Liquids.” ACM Transactions on Graphics, vol. 33, no. 4, 137, ACM, 2014, doi:10.1145/2601097.2601126.","ista":"Raveendran K, Wojtan C, Thuerey N, Türk G. 2014. Blending liquids. ACM Transactions on Graphics. SIGGRAPH: International Conference and Exhibition on Computer Graphics and Interactive Techniques vol. 33, 137.","ama":"Raveendran K, Wojtan C, Thuerey N, Türk G. Blending liquids. In: ACM Transactions on Graphics. Vol 33. ACM; 2014. doi:10.1145/2601097.2601126","ieee":"K. Raveendran, C. Wojtan, N. Thuerey, and G. Türk, “Blending liquids,” in ACM Transactions on Graphics, Vancouver, Canada, 2014, vol. 33, no. 4.","short":"K. Raveendran, C. Wojtan, N. Thuerey, G. Türk, in:, ACM Transactions on Graphics, ACM, 2014."},"date_created":"2018-12-11T11:55:28Z","doi":"10.1145/2601097.2601126","intvolume":" 33","file_date_updated":"2020-07-14T12:45:27Z","oa":1,"ddc":["000"],"abstract":[{"lang":"eng","text":"We present a method for smoothly blending between existing liquid animations. We introduce a semi-automatic method for matching two existing liquid animations, which we use to create new fluid motion that plausibly interpolates the input. Our contributions include a new space-time non-rigid iterative closest point algorithm that incorporates user guidance, a subsampling technique for efficient registration of meshes with millions of vertices, and a fast surface extraction algorithm that produces 3D triangle meshes from a 4D space-time surface. Our technique can be used to instantly create hundreds of new simulations, or to interactively explore complex parameter spaces. Our method is guaranteed to produce output that does not deviate from the input animations, and it generalizes to multiple dimensions. Because our method runs at interactive rates after the initial precomputation step, it has potential applications in games and training simulations."}],"has_accepted_license":"1","article_processing_charge":"No","conference":{"start_date":"2014-08-10","name":"SIGGRAPH: International Conference and Exhibition on Computer Graphics and Interactive Techniques","location":"Vancouver, Canada","end_date":"2014-08-14"},"article_number":"137","month":"07","project":[{"_id":"25636330-B435-11E9-9278-68D0E5697425","grant_number":"11-NSF-1070","name":"Genome-wide Analysis of Root Traits"}],"oa_version":"Submitted Version","publication_status":"published","publisher":"ACM","type":"conference","isi":1,"_id":"2058","title":"Blending liquids","department":[{"_id":"ChWo"}],"date_updated":"2025-09-29T11:49:44Z"},{"article_processing_charge":"No","has_accepted_license":"1","license":"https://creativecommons.org/licenses/by/4.0/","ddc":["580"],"abstract":[{"lang":"eng","text":"Plant embryogenesis is regulated by differential distribution of the plant hormone auxin. However, the cells establishing these gradients during microspore embryogenesis remain to be identified. For the first time, we describe, using the DR5 or DR5rev reporter gene systems, the GFP- and GUS-based auxin biosensors to monitor auxin during Brassica napus androgenesis at cellular resolution in the initial stages. Our study provides evidence that the distribution of auxin changes during embryo development and depends on the temperature-inducible in vitro culture conditions. For this, microspores (mcs) were induced to embryogenesis by heat treatment and then subjected to genetic modification via Agrobacterium tumefaciens. The duration of high temperature treatment had a significant influence on auxin distribution in isolated and in vitro-cultured microspores and on microspore-derived embryo development. In the “mild” heat-treated (1 day at 32 °C) mcs, auxin localized in a polar way already at the uni-nucleate microspore, which was critical for the initiation of embryos with suspensor-like structure. Assuming a mean mcs radius of 20 μm, endogenous auxin content in a single cell corresponded to concentration of 1.01 μM. In mcs subjected to a prolonged heat (5 days at 32 °C), although auxin concentration increased dozen times, auxin polarization was set up at a few-celled pro-embryos without suspensor. Those embryos were enclosed in the outer wall called the exine. The exine rupture was accompanied by the auxin gradient polarization. Relative quantitative estimation of auxin, using time-lapse imaging, revealed that primordia possess up to 1.3-fold higher amounts than those found in the root apices of transgenic MDEs in the presence of exogenous auxin. Our results show, for the first time, which concentration of endogenous auxin coincides with the first cell division and how the high temperature interplays with auxin, by what affects delay early establishing microspore polarity. Moreover, we present how the local auxin accumulation demonstrates the apical–basal axis formation of the androgenic embryo and directs the axiality of the adult haploid plant."}],"file_date_updated":"2020-07-14T12:45:27Z","oa":1,"intvolume":" 251","doi":"10.1007/s00709-014-0616-1","scopus_import":"1","quality_controlled":"1","citation":{"apa":"Dubas, E., Moravčíková, J., Libantová, J., Matušíková, I., Benková, E., Zur, I., & Krzewska, M. (2014). The influence of heat stress on auxin distribution in transgenic B napus microspores and microspore derived embryos. Protoplasma. Springer. https://doi.org/10.1007/s00709-014-0616-1","chicago":"Dubas, Ewa, Jana Moravčíková, Jana Libantová, Ildikó Matušíková, Eva Benková, Iwona Zur, and Monika Krzewska. “The Influence of Heat Stress on Auxin Distribution in Transgenic B Napus Microspores and Microspore Derived Embryos.” Protoplasma. Springer, 2014. https://doi.org/10.1007/s00709-014-0616-1.","mla":"Dubas, Ewa, et al. “The Influence of Heat Stress on Auxin Distribution in Transgenic B Napus Microspores and Microspore Derived Embryos.” Protoplasma, vol. 251, no. 5, Springer, 2014, pp. 1077–87, doi:10.1007/s00709-014-0616-1.","ista":"Dubas E, Moravčíková J, Libantová J, Matušíková I, Benková E, Zur I, Krzewska M. 2014. The influence of heat stress on auxin distribution in transgenic B napus microspores and microspore derived embryos. Protoplasma. 251(5), 1077–1087.","ieee":"E. Dubas et al., “The influence of heat stress on auxin distribution in transgenic B napus microspores and microspore derived embryos,” Protoplasma, vol. 251, no. 5. Springer, pp. 1077–1087, 2014.","short":"E. Dubas, J. Moravčíková, J. Libantová, I. Matušíková, E. Benková, I. Zur, M. Krzewska, Protoplasma 251 (2014) 1077–1087.","ama":"Dubas E, Moravčíková J, Libantová J, et al. The influence of heat stress on auxin distribution in transgenic B napus microspores and microspore derived embryos. Protoplasma. 2014;251(5):1077-1087. doi:10.1007/s00709-014-0616-1"},"date_created":"2018-12-11T11:55:29Z","day":"20","year":"2014","publication":"Protoplasma","page":"1077 - 1087","language":[{"iso":"eng"}],"issue":"5","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","pubrep_id":"394","date_published":"2014-02-20T00:00:00Z","file":[{"content_type":"application/pdf","access_level":"open_access","date_created":"2018-12-12T10:18:31Z","checksum":"d570a6073765118fc0bb83c31d96fa53","file_size":6377990,"file_name":"IST-2015-394-v1+1_s00709-014-0616-1.pdf","relation":"main_file","creator":"system","file_id":"5353","date_updated":"2020-07-14T12:45:27Z"}],"author":[{"first_name":"Ewa","full_name":"Dubas, Ewa","last_name":"Dubas"},{"first_name":"Jana","last_name":"Moravčíková","full_name":"Moravčíková, Jana"},{"first_name":"Jana","full_name":"Libantová, Jana","last_name":"Libantová"},{"last_name":"Matušíková","full_name":"Matušíková, Ildikó","first_name":"Ildikó"},{"full_name":"Benková, Eva","orcid":"0000-0002-8510-9739","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","last_name":"Benková","first_name":"Eva"},{"first_name":"Iwona","full_name":"Zur, Iwona","last_name":"Zur"},{"full_name":"Krzewska, Monika","last_name":"Krzewska","first_name":"Monika"}],"external_id":{"isi":["000340480300008"]},"publist_id":"4987","volume":251,"status":"public","acknowledgement":"The research was supported by the IPP PAS-IPGB SAS bilateral project (“Molecular analysis of auxin distribution in oilseed androgenic embryos”), IPP PAS-FWO VIB bilateral project (“Auxin as signaling molecule in doubled haploid production of rape (B. napus var. oleifera)”), individual national research project 2011/01/D/NZ9/02547, and VEGA 2-0090-14.","date_updated":"2025-09-29T11:49:12Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"The influence of heat stress on auxin distribution in transgenic B napus microspores and microspore derived embryos","department":[{"_id":"EvBe"}],"_id":"2059","isi":1,"publisher":"Springer","publication_status":"published","type":"journal_article","oa_version":"Published Version","month":"02"},{"date_created":"2018-12-11T11:55:29Z","citation":{"ista":"Mazur E, Kurczyñska E, Friml J. 2014. Cellular events during interfascicular cambium ontogenesis in inflorescence stems of Arabidopsis. Protoplasma. 251(5), 1125–1139.","chicago":"Mazur, Ewa, Ewa Kurczyñska, and Jiří Friml. “Cellular Events during Interfascicular Cambium Ontogenesis in Inflorescence Stems of Arabidopsis.” Protoplasma. Springer, 2014. https://doi.org/10.1007/s00709-014-0620-5.","mla":"Mazur, Ewa, et al. “Cellular Events during Interfascicular Cambium Ontogenesis in Inflorescence Stems of Arabidopsis.” Protoplasma, vol. 251, no. 5, Springer, 2014, pp. 1125–39, doi:10.1007/s00709-014-0620-5.","apa":"Mazur, E., Kurczyñska, E., & Friml, J. (2014). Cellular events during interfascicular cambium ontogenesis in inflorescence stems of Arabidopsis. Protoplasma. Springer. https://doi.org/10.1007/s00709-014-0620-5","ama":"Mazur E, Kurczyñska E, Friml J. Cellular events during interfascicular cambium ontogenesis in inflorescence stems of Arabidopsis. Protoplasma. 2014;251(5):1125-1139. doi:10.1007/s00709-014-0620-5","short":"E. Mazur, E. Kurczyñska, J. Friml, Protoplasma 251 (2014) 1125–1139.","ieee":"E. Mazur, E. Kurczyñska, and J. Friml, “Cellular events during interfascicular cambium ontogenesis in inflorescence stems of Arabidopsis,” Protoplasma, vol. 251, no. 5. Springer, pp. 1125–1139, 2014."},"quality_controlled":"1","scopus_import":"1","day":"14","intvolume":" 251","doi":"10.1007/s00709-014-0620-5","abstract":[{"text":"Development of cambium and its activity is important for our knowledge of the mechanism of secondary growth. Arabidopsis thaliana emerges as a good model plant for such a kind of study. Thus, this paper reports on cellular events taking place in the interfascicular regions of inflorescence stems of A. thaliana, leading to the development of interfascicular cambium from differentiated interfascicular parenchyma cells (IPC). These events are as follows: appearance of auxin accumulation, PIN1 gene expression, polar PIN1 protein localization in the basal plasma membrane and periclinal divisions. Distribution of auxin was observed to be higher in differentiating into cambium parenchyma cells compared to cells within the pith and cortex. Expression of PIN1 in IPC was always preceded by auxin accumulation. Basal localization of PIN1 was already established in the cells prior to their periclinal division. These cellular events initiated within parenchyma cells adjacent to the vascular bundles and successively extended from that point towards the middle region of the interfascicular area, located between neighboring vascular bundles. The final consequence of which was the closure of the cambial ring within the stem. Changes in the chemical composition of IPC walls were also detected and included changes of pectic epitopes, xyloglucans (XG) and extensins rich in hydroxyproline (HRGPs). In summary, results presented in this paper describe interfascicular cambium ontogenesis in terms of successive cellular events in the interfascicular regions of inflorescence stems of Arabidopsis.","lang":"eng"}],"article_processing_charge":"No","status":"public","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2014-02-14T00:00:00Z","volume":251,"publist_id":"4985","author":[{"first_name":"Ewa","full_name":"Mazur, Ewa","last_name":"Mazur"},{"first_name":"Ewa","full_name":"Kurczyñska, Ewa","last_name":"Kurczyñska"},{"first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří"}],"external_id":{"isi":["000340480300012"]},"publication":"Protoplasma","page":"1125 - 1139","language":[{"iso":"eng"}],"issue":"5","year":"2014","isi":1,"_id":"2061","title":"Cellular events during interfascicular cambium ontogenesis in inflorescence stems of Arabidopsis","department":[{"_id":"JiFr"}],"date_updated":"2025-09-29T11:48:32Z","month":"02","type":"journal_article","publication_status":"published","publisher":"Springer","oa_version":"None"},{"doi":"10.1126/science.1255263","intvolume":" 345","corr_author":"1","day":"01","date_created":"2018-12-11T11:55:29Z","quality_controlled":"1","citation":{"ama":"Hu H, Gan J, Jonas PM. Fast-spiking parvalbumin^+ GABAergic interneurons: From cellular design to microcircuit function. Science. 2014;345(6196). doi:10.1126/science.1255263","short":"H. Hu, J. Gan, P.M. Jonas, Science 345 (2014).","ieee":"H. Hu, J. Gan, and P. M. Jonas, “Fast-spiking parvalbumin^+ GABAergic interneurons: From cellular design to microcircuit function,” Science, vol. 345, no. 6196. American Association for the Advancement of Science, 2014.","ista":"Hu H, Gan J, Jonas PM. 2014. Fast-spiking parvalbumin^+ GABAergic interneurons: From cellular design to microcircuit function. Science. 345(6196), 1255263.","mla":"Hu, Hua, et al. “Fast-Spiking Parvalbumin^+ GABAergic Interneurons: From Cellular Design to Microcircuit Function.” Science, vol. 345, no. 6196, 1255263, American Association for the Advancement of Science, 2014, doi:10.1126/science.1255263.","apa":"Hu, H., Gan, J., & Jonas, P. M. (2014). Fast-spiking parvalbumin^+ GABAergic interneurons: From cellular design to microcircuit function. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1255263","chicago":"Hu, Hua, Jian Gan, and Peter M Jonas. “Fast-Spiking Parvalbumin^+ GABAergic Interneurons: From Cellular Design to Microcircuit Function.” Science. American Association for the Advancement of Science, 2014. https://doi.org/10.1126/science.1255263."},"scopus_import":"1","has_accepted_license":"1","article_number":"1255263","article_processing_charge":"No","oa":1,"file_date_updated":"2020-07-14T12:45:27Z","ddc":["570"],"abstract":[{"text":"The success story of fast-spiking, parvalbumin-positive (PV+) GABAergic interneurons (GABA, γ-aminobutyric acid) in the mammalian central nervous system is noteworthy. In 1995, the properties of these interneurons were completely unknown. Twenty years later, thanks to the massive use of subcellular patch-clamp techniques, simultaneous multiple-cell recording, optogenetics, in vivo measurements, and computational approaches, our knowledge about PV+ interneurons became more extensive than for several types of pyramidal neurons. These findings have implications beyond the “small world” of basic research on GABAergic cells. For example, the results provide a first proof of principle that neuroscientists might be able to close the gaps between the molecular, cellular, network, and behavioral levels, representing one of the main challenges at the present time. Furthermore, the results may form the basis for PV+ interneurons as therapeutic targets for brain disease in the future. However, much needs to be learned about the basic function of these interneurons before clinical neuroscientists will be able to use PV+ interneurons for therapeutic purposes.","lang":"eng"}],"volume":345,"publist_id":"4984","external_id":{"isi":["000339651300036"]},"author":[{"last_name":"Hu","id":"4AC0145C-F248-11E8-B48F-1D18A9856A87","full_name":"Hu, Hua","first_name":"Hua"},{"first_name":"Jian","full_name":"Gan, Jian","id":"3614E438-F248-11E8-B48F-1D18A9856A87","last_name":"Gan"},{"last_name":"Jonas","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804","full_name":"Jonas, Peter M","first_name":"Peter M"}],"date_published":"2014-08-01T00:00:00Z","pubrep_id":"821","file":[{"file_name":"IST-2017-821-v1+1_1255263JonasPVReviewTextR_Final.pdf","file_size":215514,"checksum":"a0036a589037d37e86364fa25cc0a82f","date_created":"2018-12-12T10:16:00Z","content_type":"application/pdf","access_level":"open_access","date_updated":"2020-07-14T12:45:27Z","file_id":"5185","creator":"system","relation":"main_file"},{"relation":"main_file","file_id":"5186","creator":"system","date_updated":"2020-07-14T12:45:27Z","date_created":"2018-12-12T10:16:01Z","access_level":"open_access","content_type":"application/pdf","checksum":"e1f57d2713725449cb898fdcb8ef47b8","file_size":1732723,"file_name":"IST-2017-821-v1+2_1255263JonasPVReviewFigures_Final.pdf"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","year":"2014","issue":"6196","language":[{"iso":"eng"}],"publication":"Science","_id":"2062","ec_funded":1,"isi":1,"date_updated":"2025-09-29T11:48:03Z","department":[{"_id":"PeJo"}],"title":"Fast-spiking parvalbumin^+ GABAergic interneurons: From cellular design to microcircuit function","month":"08","project":[{"grant_number":"P24909-B24","call_identifier":"FWF","name":"Mechanisms of transmitter release at GABAergic synapses","_id":"25C26B1E-B435-11E9-9278-68D0E5697425"},{"grant_number":"268548","call_identifier":"FP7","name":"Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons","_id":"25C0F108-B435-11E9-9278-68D0E5697425"}],"oa_version":"Submitted Version","publisher":"American Association for the Advancement of Science","type":"journal_article","publication_status":"published"},{"month":"07","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4198489/","open_access":"1"}],"oa_version":"Submitted Version","publisher":"Wiley-Blackwell","type":"journal_article","publication_status":"published","_id":"2064","isi":1,"date_updated":"2025-09-29T11:47:23Z","department":[{"_id":"RySh"}],"title":"Target- and input-dependent organization of AMPA and NMDA receptors in synaptic connections of the cochlear nucleus","author":[{"full_name":"Rubio, Maía","last_name":"Rubio","first_name":"Maía"},{"last_name":"Fukazawa","full_name":"Fukazawa, Yugo","first_name":"Yugo"},{"first_name":"Naomi","last_name":"Kamasawa","full_name":"Kamasawa, Naomi"},{"last_name":"Clarkson","full_name":"Clarkson, Cheryl","first_name":"Cheryl"},{"first_name":"Elek","full_name":"Molnár, Elek","last_name":"Molnár"},{"orcid":"0000-0001-8761-9444","full_name":"Shigemoto, Ryuichi","last_name":"Shigemoto","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","first_name":"Ryuichi"}],"external_id":{"isi":["000343973100005"]},"volume":522,"publist_id":"4974","date_published":"2014-07-29T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","acknowledgement":"National Institutes of Health (NIH) Grant Number: 1R01DC013048‐0; Biotechnology and Biological Sciences Research Council, UK Grant Number: BB/J015938/1\r\n","year":"2014","issue":"18","publication":"Journal of Comparative Neurology","page":"4023 - 4042","language":[{"iso":"eng"}],"doi":"10.1002/cne.23654","intvolume":" 522","day":"29","scopus_import":"1","citation":{"mla":"Rubio, Maía, et al. “Target- and Input-Dependent Organization of AMPA and NMDA Receptors in Synaptic Connections of the Cochlear Nucleus.” Journal of Comparative Neurology, vol. 522, no. 18, Wiley-Blackwell, 2014, pp. 4023–42, doi:10.1002/cne.23654.","apa":"Rubio, M., Fukazawa, Y., Kamasawa, N., Clarkson, C., Molnár, E., & Shigemoto, R. (2014). Target- and input-dependent organization of AMPA and NMDA receptors in synaptic connections of the cochlear nucleus. Journal of Comparative Neurology. Wiley-Blackwell. https://doi.org/10.1002/cne.23654","chicago":"Rubio, Maía, Yugo Fukazawa, Naomi Kamasawa, Cheryl Clarkson, Elek Molnár, and Ryuichi Shigemoto. “Target- and Input-Dependent Organization of AMPA and NMDA Receptors in Synaptic Connections of the Cochlear Nucleus.” Journal of Comparative Neurology. Wiley-Blackwell, 2014. https://doi.org/10.1002/cne.23654.","ista":"Rubio M, Fukazawa Y, Kamasawa N, Clarkson C, Molnár E, Shigemoto R. 2014. Target- and input-dependent organization of AMPA and NMDA receptors in synaptic connections of the cochlear nucleus. Journal of Comparative Neurology. 522(18), 4023–4042.","short":"M. Rubio, Y. Fukazawa, N. Kamasawa, C. Clarkson, E. Molnár, R. Shigemoto, Journal of Comparative Neurology 522 (2014) 4023–4042.","ieee":"M. Rubio, Y. Fukazawa, N. Kamasawa, C. Clarkson, E. Molnár, and R. Shigemoto, “Target- and input-dependent organization of AMPA and NMDA receptors in synaptic connections of the cochlear nucleus,” Journal of Comparative Neurology, vol. 522, no. 18. Wiley-Blackwell, pp. 4023–4042, 2014.","ama":"Rubio M, Fukazawa Y, Kamasawa N, Clarkson C, Molnár E, Shigemoto R. Target- and input-dependent organization of AMPA and NMDA receptors in synaptic connections of the cochlear nucleus. Journal of Comparative Neurology. 2014;522(18):4023-4042. doi:10.1002/cne.23654"},"quality_controlled":"1","date_created":"2018-12-11T11:55:30Z","article_processing_charge":"No","oa":1,"abstract":[{"lang":"eng","text":"We examined the synaptic structure, quantity, and distribution of α-amino-3-hydroxy-5-methylisoxazole-4-propionic acid (AMPA)- and N-methyl-D-aspartate (NMDA)-type glutamate receptors (AMPARs and NMDARs, respectively) in rat cochlear nuclei by a highly sensitive freeze-fracture replica labeling technique. Four excitatory synapses formed by two distinct inputs, auditory nerve (AN) and parallel fibers (PF), on different cell types were analyzed. These excitatory synapse types included AN synapses on bushy cells (AN-BC synapses) and fusiform cells (AN-FC synapses) and PF synapses on FC (PF-FC synapses) and cartwheel cell spines (PF-CwC synapses). Immunogold labeling revealed differences in synaptic structure as well as AMPAR and NMDAR number and/or density in both AN and PF synapses, indicating a target-dependent organization. The immunogold receptor labeling also identified differences in the synaptic organization of FCs based on AN or PF connections, indicating an input-dependent organization in FCs. Among the four excitatory synapse types, the AN-BC synapses were the smallest and had the most densely packed intramembrane particles (IMPs), whereas the PF-CwC synapses were the largest and had sparsely packed IMPs. All four synapse types showed positive correlations between the IMP-cluster area and the AMPAR number, indicating a common intrasynapse-type relationship for glutamatergic synapses. Immunogold particles for AMPARs were distributed over the entire area of individual AN synapses; PF synapses often showed synaptic areas devoid of labeling. The gold-labeling for NMDARs occurred in a mosaic fashion, with less positive correlations between the IMP-cluster area and the NMDAR number. Our observations reveal target- and input-dependent features in the structure, number, and organization of AMPARs and NMDARs in AN and PF synapses."}]},{"author":[{"first_name":"Moritz","last_name":"Bächer","full_name":"Bächer, Moritz"},{"first_name":"Emily","last_name":"Whiting","full_name":"Whiting, Emily"},{"first_name":"Bernd","full_name":"Bickel, Bernd","orcid":"0000-0001-6511-9385","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sorkine Hornung, Olga","last_name":"Sorkine Hornung","first_name":"Olga"}],"publist_id":"4958","volume":33,"extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2014-07-01T00:00:00Z","status":"public","acknowledgement":"This project was supported in part by the ERC Starting Grant iModel (StG-2012-306877). Emily Whiting is supported by the ETH Zurich / Marie Curie COFUND Postdoctoral Fellowship.","year":"2014","issue":"4","publication":"ACM Transactions on Graphics","language":[{"iso":"eng"}],"doi":"10.1145/2601097.2601157","intvolume":" 33","related_material":{"record":[{"id":"452","relation":"later_version","status":"public"}]},"day":"01","scopus_import":"1","citation":{"ista":"Bächer M, Whiting E, Bickel B, Sorkine Hornung O. 2014. Spin-It: Optimizing moment of inertia for spinnable objects. ACM Transactions on Graphics. 33(4), 96.","apa":"Bächer, M., Whiting, E., Bickel, B., & Sorkine Hornung, O. (2014). Spin-It: Optimizing moment of inertia for spinnable objects. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2601097.2601157","chicago":"Bächer, Moritz, Emily Whiting, Bernd Bickel, and Olga Sorkine Hornung. “Spin-It: Optimizing Moment of Inertia for Spinnable Objects.” ACM Transactions on Graphics. ACM, 2014. https://doi.org/10.1145/2601097.2601157.","mla":"Bächer, Moritz, et al. “Spin-It: Optimizing Moment of Inertia for Spinnable Objects.” ACM Transactions on Graphics, vol. 33, no. 4, 96, ACM, 2014, doi:10.1145/2601097.2601157.","short":"M. Bächer, E. Whiting, B. Bickel, O. Sorkine Hornung, ACM Transactions on Graphics 33 (2014).","ieee":"M. Bächer, E. Whiting, B. Bickel, and O. Sorkine Hornung, “Spin-It: Optimizing moment of inertia for spinnable objects,” ACM Transactions on Graphics, vol. 33, no. 4. ACM, 2014.","ama":"Bächer M, Whiting E, Bickel B, Sorkine Hornung O. Spin-It: Optimizing moment of inertia for spinnable objects. ACM Transactions on Graphics. 2014;33(4). doi:10.1145/2601097.2601157"},"date_created":"2018-12-11T11:55:35Z","quality_controlled":"1","article_processing_charge":"No","article_number":"96","abstract":[{"text":"Spinning tops and yo-yos have long fascinated cultures around the world with their unexpected, graceful motions that seemingly elude gravity. We present an algorithm to generate designs for spinning objects by optimizing rotational dynamics properties. As input, the user provides a solid 3D model and a desired axis of rotation. Our approach then modifies the mass distribution such that the principal directions of the moment of inertia align with the target rotation frame. We augment the model by creating voids inside its volume, with interior fill represented by an adaptive multi-resolution vox-elization. The discrete voxel fill values are optimized using a continuous, nonlinear formulation. Further, we optimize for rotational stability by maximizing the dominant principal moment. We extend our technique to incorporate deformation and multiple materials for cases where internal voids alone are insufficient. Our method is well-suited for a variety of 3D printed models, ranging from characters to abstract shapes. We demonstrate tops and yo-yos that spin surprisingly stably despite their asymmetric appearance. ","lang":"eng"}],"article_type":"original","month":"07","oa_version":"None","type":"journal_article","publisher":"ACM","publication_status":"published","_id":"2080","publication_identifier":{"issn":["0730-0301"],"eissn":["1557-7368"]},"date_updated":"2025-08-05T14:20:24Z","title":"Spin-It: Optimizing moment of inertia for spinnable objects"},{"article_number":"63","conference":{"name":"SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques"},"date_updated":"2021-01-12T06:55:11Z","title":"Designing inflatable structures","abstract":[{"lang":"eng","text":"We propose an interactive, optimization-in-the-loop tool for designing inflatable structures. Given a target shape, the user draws a network of seams defining desired segment boundaries in 3D. Our method computes optimally-shaped flat panels for the segments, such that the inflated structure is as close as possible to the target while satisfying the desired seam positions. Our approach is underpinned by physics-based pattern optimization, accurate coarse-scale simulation using tension field theory, and a specialized constraint-optimization method. Our system is fast enough to warrant interactive exploration of different seam layouts, including internal connections, and their effects on the inflated shape. We demonstrate the resulting design process on a varied set of simulation examples, some of which we have fabricated, demonstrating excellent agreement with the design intent."}],"doi":"10.1145/2601097.2601166","_id":"2081","intvolume":" 33","day":"01","date_created":"2018-12-11T11:55:36Z","citation":{"ieee":"M. Skouras et al., “Designing inflatable structures,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, 2014, vol. 33, no. 4.","short":"M. Skouras, B. Thomaszewski, P. Kaufmann, A. Garg, B. Bickel, E. Grinspun, M. Gross, in:, ACM, 2014.","ama":"Skouras M, Thomaszewski B, Kaufmann P, et al. Designing inflatable structures. In: Vol 33. ACM; 2014. doi:10.1145/2601097.2601166","ista":"Skouras M, Thomaszewski B, Kaufmann P, Garg A, Bickel B, Grinspun E, Gross M. 2014. Designing inflatable structures. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques vol. 33, 63.","chicago":"Skouras, Mélina, Bernhard Thomaszewski, Peter Kaufmann, Akash Garg, Bernd Bickel, Eitan Grinspun, and Markus Gross. “Designing Inflatable Structures,” Vol. 33. ACM, 2014. https://doi.org/10.1145/2601097.2601166.","mla":"Skouras, Mélina, et al. Designing Inflatable Structures. Vol. 33, no. 4, 63, ACM, 2014, doi:10.1145/2601097.2601166.","apa":"Skouras, M., Thomaszewski, B., Kaufmann, P., Garg, A., Bickel, B., Grinspun, E., & Gross, M. (2014). Designing inflatable structures (Vol. 33). Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, ACM. https://doi.org/10.1145/2601097.2601166"},"year":"2014","oa_version":"None","publication_status":"published","publisher":"ACM","type":"conference","issue":"4","language":[{"iso":"eng"}],"volume":33,"extern":"1","publist_id":"4957","author":[{"first_name":"Mélina","last_name":"Skouras","full_name":"Skouras, Mélina"},{"last_name":"Thomaszewski","full_name":"Thomaszewski, Bernhard","first_name":"Bernhard"},{"full_name":"Kaufmann, Peter","last_name":"Kaufmann","first_name":"Peter"},{"first_name":"Akash","last_name":"Garg","full_name":"Garg, Akash"},{"first_name":"Bernd","full_name":"Bickel, Bernd","orcid":"0000-0001-6511-9385","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Eitan","last_name":"Grinspun","full_name":"Grinspun, Eitan"},{"full_name":"Gross, Markus","last_name":"Gross","first_name":"Markus"}],"date_published":"2014-07-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"07","acknowledgement":"This work was partly funded by the NCCR Co-Me of the Swiss NSF.","status":"public"},{"oa_version":"Submitted Version","publication_status":"published","publisher":"Springer","type":"conference","month":"09","date_updated":"2021-01-12T06:53:46Z","title":"Cost-aware automatic program repair","department":[{"_id":"ToHe"}],"_id":"1875","year":"2014","page":"268 - 284","language":[{"iso":"eng"}],"publist_id":"5221","volume":8723,"author":[{"full_name":"Samanta, Roopsha","id":"3D2AAC08-F248-11E8-B48F-1D18A9856A87","last_name":"Samanta","first_name":"Roopsha"},{"last_name":"Olivo","full_name":"Olivo, Oswaldo","first_name":"Oswaldo"},{"full_name":"Allen, Emerson","last_name":"Allen","first_name":"Emerson"}],"date_published":"2014-09-01T00:00:00Z","file":[{"file_size":409485,"file_name":"IST-2014-313-v1+1_SOE.SAS14.pdf","date_created":"2018-12-12T10:07:51Z","access_level":"open_access","content_type":"application/pdf","checksum":"78ec4ea1bdecc676cd3e8cad35c6182c","date_updated":"2020-07-14T12:45:19Z","relation":"main_file","file_id":"4650","creator":"system"}],"user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","pubrep_id":"313","status":"public","has_accepted_license":"1","conference":{"start_date":"2014-09-11","location":"Munich, Germany","name":"SAS: Static Analysis Symposium","end_date":"2014-09-14"},"editor":[{"last_name":"Müller-Olm","full_name":"Müller-Olm, Markus","first_name":"Markus"},{"full_name":"Seidl, Helmut","last_name":"Seidl","first_name":"Helmut"}],"oa":1,"file_date_updated":"2020-07-14T12:45:19Z","ddc":["000","005"],"abstract":[{"lang":"eng","text":"We present a formal framework for repairing infinite-state, imperative, sequential programs, with (possibly recursive) procedures and multiple assertions; the framework can generate repaired programs by modifying the original erroneous program in multiple program locations, and can ensure the readability of the repaired program using user-defined expression templates; the framework also generates a set of inductive assertions that serve as a proof of correctness of the repaired program. As a step toward integrating programmer intent and intuition in automated program repair, we present a cost-aware formulation - given a cost function associated with permissible statement modifications, the goal is to ensure that the total program modification cost does not exceed a given repair budget. As part of our predicate abstractionbased solution framework, we present a sound and complete algorithm for repair of Boolean programs. We have developed a prototype tool based on SMT solving and used it successfully to repair diverse errors in benchmark C programs."}],"doi":"10.1007/978-3-319-10936-7_17","intvolume":" 8723","day":"01","alternative_title":["LNCS"],"date_created":"2018-12-11T11:54:29Z","quality_controlled":"1","citation":{"ama":"Samanta R, Olivo O, Allen E. Cost-aware automatic program repair. In: Müller-Olm M, Seidl H, eds. Vol 8723. Springer; 2014:268-284. doi:10.1007/978-3-319-10936-7_17","short":"R. Samanta, O. Olivo, E. Allen, in:, M. Müller-Olm, H. Seidl (Eds.), Springer, 2014, pp. 268–284.","ieee":"R. Samanta, O. Olivo, and E. Allen, “Cost-aware automatic program repair,” presented at the SAS: Static Analysis Symposium, Munich, Germany, 2014, vol. 8723, pp. 268–284.","apa":"Samanta, R., Olivo, O., & Allen, E. (2014). Cost-aware automatic program repair. In M. Müller-Olm & H. Seidl (Eds.) (Vol. 8723, pp. 268–284). Presented at the SAS: Static Analysis Symposium, Munich, Germany: Springer. https://doi.org/10.1007/978-3-319-10936-7_17","mla":"Samanta, Roopsha, et al. Cost-Aware Automatic Program Repair. Edited by Markus Müller-Olm and Helmut Seidl, vol. 8723, Springer, 2014, pp. 268–84, doi:10.1007/978-3-319-10936-7_17.","chicago":"Samanta, Roopsha, Oswaldo Olivo, and Emerson Allen. “Cost-Aware Automatic Program Repair.” edited by Markus Müller-Olm and Helmut Seidl, 8723:268–84. Springer, 2014. https://doi.org/10.1007/978-3-319-10936-7_17.","ista":"Samanta R, Olivo O, Allen E. 2014. Cost-aware automatic program repair. SAS: Static Analysis Symposium, LNCS, vol. 8723, 268–284."},"scopus_import":1},{"article_processing_charge":"No","abstract":[{"text":"We study densities of functionals over uniformly bounded triangulations of a Delaunay set of vertices, and prove that the minimum is attained for the Delaunay triangulation if this is the case for finite sets.","lang":"eng"}],"oa":1,"intvolume":" 14","doi":"10.17323/1609-4514-2014-14-3-491-504","citation":{"ista":"Dolbilin N, Edelsbrunner H, Glazyrin A, Musin O. 2014. Functionals on triangulations of delaunay sets. Moscow Mathematical Journal. 14(3), 491–504.","mla":"Dolbilin, Nikolai, et al. “Functionals on Triangulations of Delaunay Sets.” Moscow Mathematical Journal, vol. 14, no. 3, Independent University of Moscow, 2014, pp. 491–504, doi:10.17323/1609-4514-2014-14-3-491-504.","apa":"Dolbilin, N., Edelsbrunner, H., Glazyrin, A., & Musin, O. (2014). Functionals on triangulations of delaunay sets. Moscow Mathematical Journal. Independent University of Moscow. https://doi.org/10.17323/1609-4514-2014-14-3-491-504","chicago":"Dolbilin, Nikolai, Herbert Edelsbrunner, Alexey Glazyrin, and Oleg Musin. “Functionals on Triangulations of Delaunay Sets.” Moscow Mathematical Journal. Independent University of Moscow, 2014. https://doi.org/10.17323/1609-4514-2014-14-3-491-504.","ieee":"N. Dolbilin, H. Edelsbrunner, A. Glazyrin, and O. Musin, “Functionals on triangulations of delaunay sets,” Moscow Mathematical Journal, vol. 14, no. 3. Independent University of Moscow, pp. 491–504, 2014.","short":"N. Dolbilin, H. Edelsbrunner, A. Glazyrin, O. Musin, Moscow Mathematical Journal 14 (2014) 491–504.","ama":"Dolbilin N, Edelsbrunner H, Glazyrin A, Musin O. Functionals on triangulations of delaunay sets. Moscow Mathematical Journal. 2014;14(3):491-504. doi:10.17323/1609-4514-2014-14-3-491-504"},"date_created":"2018-12-11T11:54:29Z","quality_controlled":"1","scopus_import":"1","day":"01","year":"2014","language":[{"iso":"eng"}],"publication":"Moscow Mathematical Journal","page":"491 - 504","issue":"3","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2014-07-01T00:00:00Z","volume":14,"publist_id":"5220","external_id":{"arxiv":["1211.7053"]},"author":[{"last_name":"Dolbilin","full_name":"Dolbilin, Nikolai","first_name":"Nikolai"},{"orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner","first_name":"Herbert"},{"full_name":"Glazyrin, Alexey","last_name":"Glazyrin","first_name":"Alexey"},{"last_name":"Musin","full_name":"Musin, Oleg","first_name":"Oleg"}],"status":"public","date_updated":"2025-07-10T11:51:26Z","department":[{"_id":"HeEd"}],"title":"Functionals on triangulations of delaunay sets","_id":"1876","publication_identifier":{"issn":["1609-3321"]},"publisher":"Independent University of Moscow","type":"journal_article","publication_status":"published","oa_version":"Submitted Version","arxiv":1,"month":"07","article_type":"original","main_file_link":[{"url":"http://arxiv.org/abs/1211.7053","open_access":"1"}]},{"year":"2014","issue":"7523","language":[{"iso":"eng"}],"publication":"Nature","page":"441 - 442","external_id":{"isi":["000343775900028"]},"author":[{"first_name":"Michael K","full_name":"Sixt, Michael K","orcid":"0000-0002-6620-9179","last_name":"Sixt","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-7829-3518","full_name":"Vaahtomeri, Kari","id":"368EE576-F248-11E8-B48F-1D18A9856A87","last_name":"Vaahtomeri","first_name":"Kari"}],"publist_id":"5219","volume":514,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2014-10-23T00:00:00Z","status":"public","article_processing_charge":"No","abstract":[{"text":"During inflammation, lymph nodes swell with an influx of immune cells. New findings identify a signalling pathway that induces relaxation in the contractile cells that give structure to these organs.","lang":"eng"}],"doi":"10.1038/514441a","intvolume":" 514","day":"23","corr_author":"1","scopus_import":"1","citation":{"apa":"Sixt, M. K., & Vaahtomeri, K. (2014). Physiology: Relax and come in. Nature. Springer Nature. https://doi.org/10.1038/514441a","mla":"Sixt, Michael K., and Kari Vaahtomeri. “Physiology: Relax and Come In.” Nature, vol. 514, no. 7523, Springer Nature, 2014, pp. 441–42, doi:10.1038/514441a.","chicago":"Sixt, Michael K, and Kari Vaahtomeri. “Physiology: Relax and Come In.” Nature. Springer Nature, 2014. https://doi.org/10.1038/514441a.","ista":"Sixt MK, Vaahtomeri K. 2014. Physiology: Relax and come in. Nature. 514(7523), 441–442.","ama":"Sixt MK, Vaahtomeri K. Physiology: Relax and come in. Nature. 2014;514(7523):441-442. doi:10.1038/514441a","ieee":"M. K. Sixt and K. Vaahtomeri, “Physiology: Relax and come in,” Nature, vol. 514, no. 7523. Springer Nature, pp. 441–442, 2014.","short":"M.K. Sixt, K. Vaahtomeri, Nature 514 (2014) 441–442."},"date_created":"2018-12-11T11:54:30Z","quality_controlled":"1","oa_version":"None","publisher":"Springer Nature","publication_status":"published","type":"journal_article","article_type":"letter_note","month":"10","date_updated":"2025-09-29T13:09:03Z","department":[{"_id":"MiSi"}],"title":"Physiology: Relax and come in","_id":"1877","isi":1},{"intvolume":" 124","_id":"1884","citation":{"ama":"Landau D, Stewart C, Reiter J, et al. Novel putative driver gene mutations in chronic lymphocytic leukemia (CLL): results from a combined analysis of whole exome sequencing of 262 primary CLL aamples. Blood. 2014;124(21):1952-1952.","ieee":"D. Landau et al., “Novel putative driver gene mutations in chronic lymphocytic leukemia (CLL): results from a combined analysis of whole exome sequencing of 262 primary CLL aamples,” Blood, vol. 124, no. 21. American Society of Hematology, pp. 1952–1952, 2014.","short":"D. Landau, C. Stewart, J. Reiter, M. Lawrence, C. Sougnez, J. Brown, A. Lopez Guillermo, S. Gabriel, E. Lander, D. Neuberg, C. López Otín, E. Campo, G. Getz, C. Wu, Blood 124 (2014) 1952–1952.","mla":"Landau, Dan, et al. “Novel Putative Driver Gene Mutations in Chronic Lymphocytic Leukemia (CLL): Results from a Combined Analysis of Whole Exome Sequencing of 262 Primary CLL Aamples.” Blood, vol. 124, no. 21, American Society of Hematology, 2014, pp. 1952–1952.","chicago":"Landau, Dan, Chip Stewart, Johannes Reiter, Michael Lawrence, Carrie Sougnez, Jennifer Brown, Armando Lopez Guillermo, et al. “Novel Putative Driver Gene Mutations in Chronic Lymphocytic Leukemia (CLL): Results from a Combined Analysis of Whole Exome Sequencing of 262 Primary CLL Aamples.” Blood. American Society of Hematology, 2014.","apa":"Landau, D., Stewart, C., Reiter, J., Lawrence, M., Sougnez, C., Brown, J., … Wu, C. (2014). Novel putative driver gene mutations in chronic lymphocytic leukemia (CLL): results from a combined analysis of whole exome sequencing of 262 primary CLL aamples. Blood. American Society of Hematology.","ista":"Landau D, Stewart C, Reiter J, Lawrence M, Sougnez C, Brown J, Lopez Guillermo A, Gabriel S, Lander E, Neuberg D, López Otín C, Campo E, Getz G, Wu C. 2014. Novel putative driver gene mutations in chronic lymphocytic leukemia (CLL): results from a combined analysis of whole exome sequencing of 262 primary CLL aamples. Blood. 124(21), 1952–1952."},"date_created":"2018-12-11T11:54:32Z","day":"04","date_updated":"2021-01-12T06:53:50Z","department":[{"_id":"KrCh"}],"abstract":[{"text":"Unbiased high-throughput massively parallel sequencing methods have transformed the process of discovery of novel putative driver gene mutations in cancer. In chronic lymphocytic leukemia (CLL), these methods have yielded several unexpected findings, including the driver genes SF3B1, NOTCH1 and POT1. Recent analysis, utilizing down-sampling of existing datasets, has shown that the discovery process of putative drivers is far from complete across cancer. In CLL, while driver gene mutations affecting >10% of patients were efficiently discovered with previously published CLL cohorts of up to 160 samples subjected to whole exome sequencing (WES), this sample size has only 0.78 power to detect drivers affecting 5% of patients, and only 0.12 power for drivers affecting 2% of patients. These calculations emphasize the need to apply unbiased WES to larger patient cohorts.","lang":"eng"}],"title":"Novel putative driver gene mutations in chronic lymphocytic leukemia (CLL): results from a combined analysis of whole exome sequencing of 262 primary CLL aamples","month":"12","date_published":"2014-12-04T00:00:00Z","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Landau","full_name":"Landau, Dan","first_name":"Dan"},{"first_name":"Chip","full_name":"Stewart, Chip","last_name":"Stewart"},{"full_name":"Reiter, Johannes","orcid":"0000-0002-0170-7353","id":"4A918E98-F248-11E8-B48F-1D18A9856A87","last_name":"Reiter","first_name":"Johannes"},{"last_name":"Lawrence","full_name":"Lawrence, Michael","first_name":"Michael"},{"full_name":"Sougnez, Carrie","last_name":"Sougnez","first_name":"Carrie"},{"first_name":"Jennifer","full_name":"Brown, Jennifer","last_name":"Brown"},{"last_name":"Lopez Guillermo","full_name":"Lopez Guillermo, Armando","first_name":"Armando"},{"first_name":"Stacey","full_name":"Gabriel, Stacey","last_name":"Gabriel"},{"first_name":"Eric","last_name":"Lander","full_name":"Lander, Eric"},{"last_name":"Neuberg","full_name":"Neuberg, Donna","first_name":"Donna"},{"full_name":"López Otín, Carlos","last_name":"López Otín","first_name":"Carlos"},{"last_name":"Campo","full_name":"Campo, Elias","first_name":"Elias"},{"full_name":"Getz, Gad","last_name":"Getz","first_name":"Gad"},{"last_name":"Wu","full_name":"Wu, Catherine","first_name":"Catherine"}],"publist_id":"5211","volume":124,"status":"public","main_file_link":[{"url":"http://www.bloodjournal.org/content/124/21/1952?sso-checked=true"}],"publication_status":"published","publisher":"American Society of Hematology","type":"journal_article","year":"2014","oa_version":"None","publication":"Blood","language":[{"iso":"eng"}],"page":"1952 - 1952","issue":"21"},{"date_updated":"2025-09-29T13:08:33Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"GaTk"}],"title":"Variance predicts salience in central sensory processing","_id":"1886","isi":1,"oa_version":"Published Version","publication_status":"published","type":"journal_article","publisher":"eLife Sciences Publications","month":"11","project":[{"call_identifier":"FWF","grant_number":"P 25651-N26","name":"Sensitivity to higher-order statistics in natural scenes","_id":"254D1A94-B435-11E9-9278-68D0E5697425"}],"has_accepted_license":"1","article_number":"e03722","article_processing_charge":"No","oa":1,"file_date_updated":"2020-07-14T12:45:20Z","abstract":[{"text":"Information processing in the sensory periphery is shaped by natural stimulus statistics. In the periphery, a transmission bottleneck constrains performance; thus efficient coding implies that natural signal components with a predictably wider range should be compressed. In a different regime—when sampling limitations constrain performance—efficient coding implies that more resources should be allocated to informative features that are more variable. We propose that this regime is relevant for sensory cortex when it extracts complex features from limited numbers of sensory samples. To test this prediction, we use central visual processing as a model: we show that visual sensitivity for local multi-point spatial correlations, described by dozens of independently-measured parameters, can be quantitatively predicted from the structure of natural images. This suggests that efficient coding applies centrally, where it extends to higher-order sensory features and operates in a regime in which sensitivity increases with feature variability.","lang":"eng"}],"ddc":["570"],"doi":"10.7554/eLife.03722","day":"14","citation":{"ista":"Hermundstad A, Briguglio J, Conte M, Victor J, Balasubramanian V, Tkačik G. 2014. Variance predicts salience in central sensory processing. eLife. (November), e03722.","chicago":"Hermundstad, Ann, John Briguglio, Mary Conte, Jonathan Victor, Vijay Balasubramanian, and Gašper Tkačik. “Variance Predicts Salience in Central Sensory Processing.” ELife. eLife Sciences Publications, 2014. https://doi.org/10.7554/eLife.03722.","mla":"Hermundstad, Ann, et al. “Variance Predicts Salience in Central Sensory Processing.” ELife, no. November, e03722, eLife Sciences Publications, 2014, doi:10.7554/eLife.03722.","apa":"Hermundstad, A., Briguglio, J., Conte, M., Victor, J., Balasubramanian, V., & Tkačik, G. (2014). Variance predicts salience in central sensory processing. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.03722","short":"A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, G. Tkačik, ELife (2014).","ieee":"A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, and G. Tkačik, “Variance predicts salience in central sensory processing,” eLife, no. November. eLife Sciences Publications, 2014.","ama":"Hermundstad A, Briguglio J, Conte M, Victor J, Balasubramanian V, Tkačik G. Variance predicts salience in central sensory processing. eLife. 2014;(November). doi:10.7554/eLife.03722"},"quality_controlled":"1","date_created":"2018-12-11T11:54:32Z","scopus_import":"1","year":"2014","issue":"November","publication":"eLife","language":[{"iso":"eng"}],"publist_id":"5209","external_id":{"isi":["000209685300001"]},"author":[{"full_name":"Hermundstad, Ann","last_name":"Hermundstad","first_name":"Ann"},{"first_name":"John","full_name":"Briguglio, John","last_name":"Briguglio"},{"first_name":"Mary","last_name":"Conte","full_name":"Conte, Mary"},{"full_name":"Victor, Jonathan","last_name":"Victor","first_name":"Jonathan"},{"first_name":"Vijay","last_name":"Balasubramanian","full_name":"Balasubramanian, Vijay"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkacik","orcid":"0000-0002-6699-1455","full_name":"Tkacik, Gasper","first_name":"Gasper"}],"pubrep_id":"420","date_published":"2014-11-14T00:00:00Z","file":[{"date_updated":"2020-07-14T12:45:20Z","creator":"system","file_id":"4922","relation":"main_file","file_name":"IST-2016-420-v1+1_e03722.full.pdf","file_size":5117086,"checksum":"766ac8999ac6e3364f10065a06024b8f","access_level":"open_access","content_type":"application/pdf","date_created":"2018-12-12T10:12:04Z"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public"},{"month":"01","date_published":"2014-01-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","last_name":"Cremer","full_name":"Cremer, Sylvia","orcid":"0000-0002-2193-3868"}],"publist_id":"5207","volume":43,"status":"public","publication_status":"published","publisher":"Verlag Dr. Friedrich Pfeil","type":"book_chapter","year":"2014","oa_version":"None","language":[{"iso":"eng"}],"publication":"Soziale Insekten in einer sich wandelnden Welt","page":"65 - 72","intvolume":" 43","_id":"1888","citation":{"ieee":"S. Cremer, “Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften,” in Soziale Insekten in einer sich wandelnden Welt, vol. 43, Verlag Dr. Friedrich Pfeil, 2014, pp. 65–72.","short":"S. Cremer, in:, Soziale Insekten in Einer Sich Wandelnden Welt, Verlag Dr. Friedrich Pfeil, 2014, pp. 65–72.","ama":"Cremer S. Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften. In: Soziale Insekten in Einer Sich Wandelnden Welt. Vol 43. Verlag Dr. Friedrich Pfeil; 2014:65-72.","chicago":"Cremer, Sylvia. “Soziale Immunität: Wie Sich Der Staat Gegen Pathogene Wehrt Bayerische Akademie Der Wissenschaften.” In Soziale Insekten in Einer Sich Wandelnden Welt, 43:65–72. Verlag Dr. Friedrich Pfeil, 2014.","mla":"Cremer, Sylvia. “Soziale Immunität: Wie Sich Der Staat Gegen Pathogene Wehrt Bayerische Akademie Der Wissenschaften.” Soziale Insekten in Einer Sich Wandelnden Welt, vol. 43, Verlag Dr. Friedrich Pfeil, 2014, pp. 65–72.","apa":"Cremer, S. (2014). Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften. In Soziale Insekten in einer sich wandelnden Welt (Vol. 43, pp. 65–72). Verlag Dr. Friedrich Pfeil.","ista":"Cremer S. 2014.Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften. In: Soziale Insekten in einer sich wandelnden Welt. Rundgespräche der Kommission für Ökologie, vol. 43, 65–72."},"quality_controlled":"1","date_created":"2018-12-11T11:54:33Z","alternative_title":["Rundgespräche der Kommission für Ökologie"],"publication_identifier":{"issn":["2366-2875"]},"corr_author":"1","day":"01","article_processing_charge":"No","date_updated":"2024-10-09T20:55:52Z","title":"Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften","department":[{"_id":"SyCr"}],"abstract":[{"lang":"ger","text":"Im Rahmen meiner Arbeit mit der kollektiven Krankheitsabwehr in Ameisengesellschaften interessiert mich vor allem, wie sich die Kolonien als Ganzes gegen Krankheiten wehren können. Warum ist dieses Thema der Krankheitsdynamik in Gruppen so wichtig? Ein Vergleich von solitär lebenden Individuen mit Individuen, die in sozialen Gruppen zusammenleben, zeigt die Kosten und die Vorteile des Gruppenlebens: Einerseits haben Individuen in sozialen Gruppen aufgrund der hohen Dichte, in der die Tiere zusammenleben, den hohen Interaktionsraten, die sie miteinander haben, und der engen Verwandtschaft, die sie verbindet, ein höheres Ansteckungsrisiko. Andererseits kann die individuelle Krankheitsabwehr durch die kollektive Abwehr in den Gruppen ergänzt werden."}]},{"isi":1,"_id":"1889","title":"Translation-invariant quasi-free states for fermionic systems and the BCS approximation","department":[{"_id":"RoSe"}],"date_updated":"2025-09-29T13:07:59Z","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1305.5135"}],"article_type":"original","month":"08","arxiv":1,"oa_version":"Submitted Version","publisher":"World Scientific Publishing","type":"journal_article","publication_status":"published","day":"01","scopus_import":"1","date_created":"2018-12-11T11:54:33Z","quality_controlled":"1","citation":{"short":"G. Bräunlich, C. Hainzl, R. Seiringer, Reviews in Mathematical Physics 26 (2014).","ieee":"G. Bräunlich, C. Hainzl, and R. Seiringer, “Translation-invariant quasi-free states for fermionic systems and the BCS approximation,” Reviews in Mathematical Physics, vol. 26, no. 7. World Scientific Publishing, 2014.","ama":"Bräunlich G, Hainzl C, Seiringer R. Translation-invariant quasi-free states for fermionic systems and the BCS approximation. Reviews in Mathematical Physics. 2014;26(7). doi:10.1142/S0129055X14500123","mla":"Bräunlich, Gerhard, et al. “Translation-Invariant Quasi-Free States for Fermionic Systems and the BCS Approximation.” Reviews in Mathematical Physics, vol. 26, no. 7, 1450012, World Scientific Publishing, 2014, doi:10.1142/S0129055X14500123.","apa":"Bräunlich, G., Hainzl, C., & Seiringer, R. (2014). Translation-invariant quasi-free states for fermionic systems and the BCS approximation. Reviews in Mathematical Physics. World Scientific Publishing. https://doi.org/10.1142/S0129055X14500123","chicago":"Bräunlich, Gerhard, Christian Hainzl, and Robert Seiringer. “Translation-Invariant Quasi-Free States for Fermionic Systems and the BCS Approximation.” Reviews in Mathematical Physics. World Scientific Publishing, 2014. https://doi.org/10.1142/S0129055X14500123.","ista":"Bräunlich G, Hainzl C, Seiringer R. 2014. Translation-invariant quasi-free states for fermionic systems and the BCS approximation. Reviews in Mathematical Physics. 26(7), 1450012."},"doi":"10.1142/S0129055X14500123","intvolume":" 26","oa":1,"abstract":[{"text":"We study translation-invariant quasi-free states for a system of fermions with two-particle interactions. The associated energy functional is similar to the BCS functional but also includes direct and exchange energies. We show that for suitable short-range interactions, these latter terms only lead to a renormalization of the chemical potential, with the usual properties of the BCS functional left unchanged. Our analysis thus represents a rigorous justification of part of the BCS approximation. We give bounds on the critical temperature below which the system displays superfluidity.","lang":"eng"}],"article_processing_charge":"No","article_number":"1450012","status":"public","acknowledgement":"We would like to thank Max Lein and Andreas Deuchert for valuable suggestions and remarks. Partial financial support by the NSERC (R.S.) is gratefully acknowledged.","external_id":{"arxiv":["1305.5135"],"isi":["000341933500002"]},"author":[{"first_name":"Gerhard","full_name":"Bräunlich, Gerhard","last_name":"Bräunlich"},{"last_name":"Hainzl","full_name":"Hainzl, Christian","first_name":"Christian"},{"first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521"}],"volume":26,"publist_id":"5206","date_published":"2014-08-01T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"7","publication":"Reviews in Mathematical Physics","language":[{"iso":"eng"}],"year":"2014"},{"date_updated":"2025-09-29T13:07:21Z","department":[{"_id":"ScienComp"},{"_id":"PeJo"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Sequential effects in continued visual search: Using fixation-related potentials to compare distractor processing before and after target detection","_id":"1890","isi":1,"oa_version":"Published Version","type":"journal_article","publication_status":"published","publisher":"Wiley-Blackwell","month":"02","has_accepted_license":"1","article_processing_charge":"No","oa":1,"file_date_updated":"2020-07-14T12:45:20Z","abstract":[{"text":"To search for a target in a complex environment is an everyday behavior that ends with finding the target. When we search for two identical targets, however, we must continue the search after finding the first target and memorize its location. We used fixation-related potentials to investigate the neural correlates of different stages of the search, that is, before and after finding the first target. Having found the first target influenced subsequent distractor processing. Compared to distractor fixations before the first target fixation, a negative shift was observed for three subsequent distractor fixations. These results suggest that processing a target in continued search modulates the brain's response, either transiently by reflecting temporary working memory processes or permanently by reflecting working memory retention.","lang":"eng"}],"ddc":["000"],"doi":"10.1111/psyp.12062","intvolume":" 51","day":"11","date_created":"2018-12-11T11:54:34Z","citation":{"chicago":"Körner, Christof, Verena Braunstein, Matthias Stangl, Alois Schlögl, Christa Neuper, and Anja Ischebeck. “Sequential Effects in Continued Visual Search: Using Fixation-Related Potentials to Compare Distractor Processing before and after Target Detection.” Psychophysiology. Wiley-Blackwell, 2014. https://doi.org/10.1111/psyp.12062.","apa":"Körner, C., Braunstein, V., Stangl, M., Schlögl, A., Neuper, C., & Ischebeck, A. (2014). Sequential effects in continued visual search: Using fixation-related potentials to compare distractor processing before and after target detection. Psychophysiology. Wiley-Blackwell. https://doi.org/10.1111/psyp.12062","mla":"Körner, Christof, et al. “Sequential Effects in Continued Visual Search: Using Fixation-Related Potentials to Compare Distractor Processing before and after Target Detection.” Psychophysiology, vol. 51, no. 4, Wiley-Blackwell, 2014, pp. 385–95, doi:10.1111/psyp.12062.","ista":"Körner C, Braunstein V, Stangl M, Schlögl A, Neuper C, Ischebeck A. 2014. Sequential effects in continued visual search: Using fixation-related potentials to compare distractor processing before and after target detection. Psychophysiology. 51(4), 385–395.","ama":"Körner C, Braunstein V, Stangl M, Schlögl A, Neuper C, Ischebeck A. Sequential effects in continued visual search: Using fixation-related potentials to compare distractor processing before and after target detection. Psychophysiology. 2014;51(4):385-395. doi:10.1111/psyp.12062","ieee":"C. Körner, V. Braunstein, M. Stangl, A. Schlögl, C. Neuper, and A. Ischebeck, “Sequential effects in continued visual search: Using fixation-related potentials to compare distractor processing before and after target detection,” Psychophysiology, vol. 51, no. 4. Wiley-Blackwell, pp. 385–395, 2014.","short":"C. Körner, V. Braunstein, M. Stangl, A. Schlögl, C. Neuper, A. Ischebeck, Psychophysiology 51 (2014) 385–395."},"scopus_import":"1","year":"2014","issue":"4","publication":"Psychophysiology","language":[{"iso":"eng"}],"page":"385 - 395","publist_id":"5205","volume":51,"external_id":{"isi":["000332585900010"]},"author":[{"full_name":"Körner, Christof","last_name":"Körner","first_name":"Christof"},{"full_name":"Braunstein, Verena","last_name":"Braunstein","first_name":"Verena"},{"first_name":"Matthias","last_name":"Stangl","full_name":"Stangl, Matthias"},{"first_name":"Alois","orcid":"0000-0002-5621-8100","full_name":"Schlögl, Alois","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","last_name":"Schlögl"},{"full_name":"Neuper, Christa","last_name":"Neuper","first_name":"Christa"},{"first_name":"Anja","last_name":"Ischebeck","full_name":"Ischebeck, Anja"}],"pubrep_id":"442","date_published":"2014-02-11T00:00:00Z","file":[{"date_updated":"2020-07-14T12:45:20Z","relation":"main_file","file_id":"5233","creator":"system","file_size":543243,"file_name":"IST-2016-442-v1+1_K-rner_et_al-2014-Psychophysiology.pdf","date_created":"2018-12-12T10:16:44Z","content_type":"application/pdf","access_level":"open_access","checksum":"4255b6185e774acce1d99f8e195c564d"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","acknowledgement":"Funded by Austrian Science Fund (FWF) Grant Number: P 22189-B18; European Union within the 6th Framework Programme Grant Number: 517590; State government of Styria Grant Number: PN 4055","status":"public"},{"year":"2014","issue":"5","publication":"Proteins: Structure, Function and Bioinformatics","language":[{"iso":"eng"}],"page":"717 - 726","external_id":{"isi":["000337280400003"]},"author":[{"first_name":"Mateusz","last_name":"Chwastyk","full_name":"Chwastyk, Mateusz"},{"first_name":"Albert","full_name":"Galera Prat, Albert","last_name":"Galera Prat"},{"first_name":"Mateusz K","full_name":"Sikora, Mateusz K","id":"2F74BCDE-F248-11E8-B48F-1D18A9856A87","last_name":"Sikora"},{"first_name":"Àngel","last_name":"Gómez Sicilia","full_name":"Gómez Sicilia, Àngel"},{"full_name":"Carrión Vázquez, Mariano","last_name":"Carrión Vázquez","first_name":"Mariano"},{"first_name":"Marek","last_name":"Cieplak","full_name":"Cieplak, Marek"}],"publist_id":"5204","volume":82,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2014-05-01T00:00:00Z","acknowledgement":"Grant Nr. 2011/01/N/ST3/02475","status":"public","article_processing_charge":"No","abstract":[{"lang":"eng","text":"We provide theoretical tests of a novel experimental technique to determine mechanostability of proteins based on stretching a mechanically protected protein by single-molecule force spectroscopy. This technique involves stretching a homogeneous or heterogeneous chain of reference proteins (single-molecule markers) in which one of them acts as host to the guest protein under study. The guest protein is grafted into the host through genetic engineering. It is expected that unraveling of the host precedes the unraveling of the guest removing ambiguities in the reading of the force-extension patterns of the guest protein. We study examples of such systems within a coarse-grained structure-based model. We consider systems with various ratios of mechanostability for the host and guest molecules and compare them to experimental results involving cohesin I as the guest molecule. For a comparison, we also study the force-displacement patterns in proteins that are linked in a serial fashion. We find that the mechanostability of the guest is similar to that of the isolated or serially linked protein. We also demonstrate that the ideal configuration of this strategy would be one in which the host is much more mechanostable than the single-molecule markers. We finally show that it is troublesome to use the highly stable cystine knot proteins as a host to graft a guest in stretching studies because this would involve a cleaving procedure."}],"doi":"10.1002/prot.24436","intvolume":" 82","day":"01","scopus_import":"1","citation":{"ista":"Chwastyk M, Galera Prat A, Sikora MK, Gómez Sicilia À, Carrión Vázquez M, Cieplak M. 2014. Theoretical tests of the mechanical protection strategy in protein nanomechanics. Proteins: Structure, Function and Bioinformatics. 82(5), 717–726.","chicago":"Chwastyk, Mateusz, Albert Galera Prat, Mateusz K Sikora, Àngel Gómez Sicilia, Mariano Carrión Vázquez, and Marek Cieplak. “Theoretical Tests of the Mechanical Protection Strategy in Protein Nanomechanics.” Proteins: Structure, Function and Bioinformatics. Wiley-Blackwell, 2014. https://doi.org/10.1002/prot.24436.","mla":"Chwastyk, Mateusz, et al. “Theoretical Tests of the Mechanical Protection Strategy in Protein Nanomechanics.” Proteins: Structure, Function and Bioinformatics, vol. 82, no. 5, Wiley-Blackwell, 2014, pp. 717–26, doi:10.1002/prot.24436.","apa":"Chwastyk, M., Galera Prat, A., Sikora, M. K., Gómez Sicilia, À., Carrión Vázquez, M., & Cieplak, M. (2014). Theoretical tests of the mechanical protection strategy in protein nanomechanics. Proteins: Structure, Function and Bioinformatics. Wiley-Blackwell. https://doi.org/10.1002/prot.24436","ama":"Chwastyk M, Galera Prat A, Sikora MK, Gómez Sicilia À, Carrión Vázquez M, Cieplak M. Theoretical tests of the mechanical protection strategy in protein nanomechanics. Proteins: Structure, Function and Bioinformatics. 2014;82(5):717-726. doi:10.1002/prot.24436","ieee":"M. Chwastyk, A. Galera Prat, M. K. Sikora, À. Gómez Sicilia, M. Carrión Vázquez, and M. Cieplak, “Theoretical tests of the mechanical protection strategy in protein nanomechanics,” Proteins: Structure, Function and Bioinformatics, vol. 82, no. 5. Wiley-Blackwell, pp. 717–726, 2014.","short":"M. Chwastyk, A. Galera Prat, M.K. Sikora, À. Gómez Sicilia, M. Carrión Vázquez, M. Cieplak, Proteins: Structure, Function and Bioinformatics 82 (2014) 717–726."},"date_created":"2018-12-11T11:54:34Z","oa_version":"None","type":"journal_article","publication_status":"published","publisher":"Wiley-Blackwell","month":"05","date_updated":"2025-09-29T13:06:49Z","title":"Theoretical tests of the mechanical protection strategy in protein nanomechanics","department":[{"_id":"CaHe"}],"_id":"1891","isi":1},{"date_updated":"2025-09-29T13:06:15Z","title":"Y-linked Mendelian inheritance of giant and dwarf male morphs in shell-brooding cichlids","department":[{"_id":"CampIT"}],"_id":"1892","pmid":1,"isi":1,"publisher":"The Royal Society","type":"journal_article","publication_status":"published","oa_version":"Submitted Version","month":"11","article_type":"original","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4211437/","open_access":"1"}],"article_processing_charge":"No","article_number":"20140253","abstract":[{"text":"Behavioural variation among conspecifics is typically contingent on individual state or environmental conditions. Sex-specific genetic polymorphisms are enigmatic because they lack conditionality, and genes causing adaptive trait variation in one sex may reduce Darwinian fitness in the other. One way to avoid such genetic antagonism is to control sex-specific traits by inheritance via sex chromosomes. Here, controlled laboratory crossings suggest that in snail-brooding cichlid fish a single locus, two-allele polymorphism located on a sex-linked chromosome of heterogametic males generates an extreme reproductive dimorphism. Both natural and sexual selection are responsible for exceptionally large body size of bourgeois males, creating a niche for a miniature male phenotype to evolve. This extreme intrasexual dimorphism results from selection on opposite size thresholds caused by a single ecological factor, empty snail shells used as breeding substrate. Paternity analyses reveal that in the field parasitic dwarf males sire the majority of offspring in direct sperm competition with large nest owners exceeding their size more than 40 times. Apparently, use of empty snail shells as breeding substrate and single locus sex-linked inheritance of growth are the major ecological and genetic mechanisms responsible for the extreme intrasexual diversity observed in Lamprologus callipterus.","lang":"eng"}],"oa":1,"intvolume":" 281","doi":"10.1098/rspb.2014.0253","scopus_import":"1","citation":{"ista":"Ocana S, Meidl P, Bonfils D, Taborsky M. 2014. Y-linked Mendelian inheritance of giant and dwarf male morphs in shell-brooding cichlids. Proceedings of the Royal Society of London Series B Biological Sciences. 281(1794), 20140253.","chicago":"Ocana, Sabine, Patrick Meidl, Danielle Bonfils, and Michael Taborsky. “Y-Linked Mendelian Inheritance of Giant and Dwarf Male Morphs in Shell-Brooding Cichlids.” Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society, 2014. https://doi.org/10.1098/rspb.2014.0253.","apa":"Ocana, S., Meidl, P., Bonfils, D., & Taborsky, M. (2014). Y-linked Mendelian inheritance of giant and dwarf male morphs in shell-brooding cichlids. Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society. https://doi.org/10.1098/rspb.2014.0253","mla":"Ocana, Sabine, et al. “Y-Linked Mendelian Inheritance of Giant and Dwarf Male Morphs in Shell-Brooding Cichlids.” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 281, no. 1794, 20140253, The Royal Society, 2014, doi:10.1098/rspb.2014.0253.","ama":"Ocana S, Meidl P, Bonfils D, Taborsky M. Y-linked Mendelian inheritance of giant and dwarf male morphs in shell-brooding cichlids. Proceedings of the Royal Society of London Series B Biological Sciences. 2014;281(1794). doi:10.1098/rspb.2014.0253","ieee":"S. Ocana, P. Meidl, D. Bonfils, and M. Taborsky, “Y-linked Mendelian inheritance of giant and dwarf male morphs in shell-brooding cichlids,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 281, no. 1794. The Royal Society, 2014.","short":"S. Ocana, P. Meidl, D. Bonfils, M. Taborsky, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014)."},"quality_controlled":"1","date_created":"2018-12-11T11:54:34Z","day":"07","year":"2014","language":[{"iso":"eng"}],"publication":"Proceedings of the Royal Society of London Series B Biological Sciences","issue":"1794","date_published":"2014-11-07T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"last_name":"Ocana","full_name":"Ocana, Sabine","first_name":"Sabine"},{"last_name":"Meidl","id":"4709BCE6-F248-11E8-B48F-1D18A9856A87","full_name":"Meidl, Patrick","first_name":"Patrick"},{"first_name":"Danielle","full_name":"Bonfils, Danielle","last_name":"Bonfils"},{"full_name":"Taborsky, Michael","last_name":"Taborsky","first_name":"Michael"}],"external_id":{"isi":["000341922700001"],"pmid":["25232141"]},"volume":281,"publist_id":"5203","status":"public","acknowledgement":"This research was supported by grants of the Swiss National Science Foundation to M.T.\r\nWe thank Tetsu Sato for providing field samples, Olivier Goffinet for field assistance, Dolores Schütz for vital help in the field and with the manuscript, David Lank, Barbara Taborsky, Suzanne Alonzo and two anonymous referees for comments on earlier manuscript versions, and the Fisheries Department, Ministry of Agriculture and Livestock of Zambia, for permission and support."}]