[{"intvolume":"        20","date_created":"2018-12-11T11:54:46Z","abstract":[{"lang":"eng","text":"(Figure Presented) Data acquisition, numerical inaccuracies, and sampling often introduce noise in measurements and simulations. Removing this noise is often necessary for efficient analysis and visualization of this data, yet many denoising techniques change the minima and maxima of a scalar field. For example, the extrema can appear or disappear, spatially move, and change their value. This can lead to wrong interpretations of the data, e.g., when the maximum temperature over an area is falsely reported being a few degrees cooler because the denoising method is unaware of these features. Recently, a topological denoising technique based on a global energy optimization was proposed, which allows the topology-controlled denoising of 2D scalar fields. While this method preserves the minima and maxima, it is constrained by the size of the data. We extend this work to large 2D data and medium-sized 3D data by introducing a novel domain decomposition approach. It allows processing small patches of the domain independently while still avoiding the introduction of new critical points. Furthermore, we propose an iterative refinement of the solution, which decreases the optimization energy compared to the previous approach and therefore gives smoother results that are closer to the input. We illustrate our technique on synthetic and real-world 2D and 3D data sets that highlight potential applications."}],"quality_controlled":"1","date_published":"2014-12-31T00:00:00Z","year":"2014","issue":"12","_id":"1930","publisher":"IEEE","day":"31","volume":20,"publist_id":"5164","title":"Fast and memory-efficient topological denoising of 2D and 3D scalar fields","publication":"IEEE Transactions on Visualization and Computer Graphics","isi":1,"status":"public","publication_status":"published","doi":"10.1109/TVCG.2014.2346432","type":"journal_article","oa_version":"None","author":[{"first_name":"David","last_name":"Günther","full_name":"Günther, David"},{"first_name":"Alec","last_name":"Jacobson","full_name":"Jacobson, Alec"},{"first_name":"Jan","id":"4505473A-F248-11E8-B48F-1D18A9856A87","last_name":"Reininghaus","full_name":"Reininghaus, Jan"},{"first_name":"Hans","full_name":"Seidel, Hans","last_name":"Seidel"},{"last_name":"Sorkine Hornung","full_name":"Sorkine Hornung, Olga","first_name":"Olga"},{"last_name":"Weinkauf","full_name":"Weinkauf, Tino","first_name":"Tino"}],"article_processing_charge":"No","date_updated":"2025-09-29T12:11:45Z","department":[{"_id":"HeEd"}],"citation":{"apa":"Günther, D., Jacobson, A., Reininghaus, J., Seidel, H., Sorkine Hornung, O., &#38; Weinkauf, T. (2014). Fast and memory-efficient topological denoising of 2D and 3D scalar fields. <i>IEEE Transactions on Visualization and Computer Graphics</i>. IEEE. <a href=\"https://doi.org/10.1109/TVCG.2014.2346432\">https://doi.org/10.1109/TVCG.2014.2346432</a>","chicago":"Günther, David, Alec Jacobson, Jan Reininghaus, Hans Seidel, Olga Sorkine Hornung, and Tino Weinkauf. “Fast and Memory-Efficient Topological Denoising of 2D and 3D Scalar Fields.” <i>IEEE Transactions on Visualization and Computer Graphics</i>. IEEE, 2014. <a href=\"https://doi.org/10.1109/TVCG.2014.2346432\">https://doi.org/10.1109/TVCG.2014.2346432</a>.","ama":"Günther D, Jacobson A, Reininghaus J, Seidel H, Sorkine Hornung O, Weinkauf T. Fast and memory-efficient topological denoising of 2D and 3D scalar fields. <i>IEEE Transactions on Visualization and Computer Graphics</i>. 2014;20(12):2585-2594. doi:<a href=\"https://doi.org/10.1109/TVCG.2014.2346432\">10.1109/TVCG.2014.2346432</a>","short":"D. Günther, A. Jacobson, J. Reininghaus, H. Seidel, O. Sorkine Hornung, T. Weinkauf, IEEE Transactions on Visualization and Computer Graphics 20 (2014) 2585–2594.","ista":"Günther D, Jacobson A, Reininghaus J, Seidel H, Sorkine Hornung O, Weinkauf T. 2014. Fast and memory-efficient topological denoising of 2D and 3D scalar fields. IEEE Transactions on Visualization and Computer Graphics. 20(12), 2585–2594.","ieee":"D. Günther, A. Jacobson, J. Reininghaus, H. Seidel, O. Sorkine Hornung, and T. Weinkauf, “Fast and memory-efficient topological denoising of 2D and 3D scalar fields,” <i>IEEE Transactions on Visualization and Computer Graphics</i>, vol. 20, no. 12. IEEE, pp. 2585–2594, 2014.","mla":"Günther, David, et al. “Fast and Memory-Efficient Topological Denoising of 2D and 3D Scalar Fields.” <i>IEEE Transactions on Visualization and Computer Graphics</i>, vol. 20, no. 12, IEEE, 2014, pp. 2585–94, doi:<a href=\"https://doi.org/10.1109/TVCG.2014.2346432\">10.1109/TVCG.2014.2346432</a>."},"language":[{"iso":"eng"}],"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"12","acknowledgement":"RTRA Digiteoproject; ERC grant; SNF award; Intel Doctoral Fellowship; MPC-VCC","page":"2585 - 2594","external_id":{"isi":["000344991700104"]}},{"author":[{"last_name":"Savin","full_name":"Savin, Cristina","first_name":"Cristina","id":"3933349E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Triesch","full_name":"Triesch, Jochen","first_name":"Jochen"}],"article_processing_charge":"No","department":[{"_id":"GaTk"}],"date_updated":"2025-09-29T12:11:13Z","status":"public","isi":1,"type":"journal_article","oa_version":"Submitted Version","publication_status":"published","doi":"10.3389/fncom.2014.00057","month":"05","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","acknowledgement":"Supported in part by EC MEXT project PLICON and the LOEWE-Program “Neuronal Coordination Research Focus Frankfurt” (NeFF). Jochen Triesch was supported by the Quandt foundation.","external_id":{"isi":["000336715400001"]},"language":[{"iso":"eng"}],"citation":{"ista":"Savin C, Triesch J. 2014. Emergence of task-dependent representations in working memory circuits. Frontiers in Computational Neuroscience. 8(MAY), 57.","ieee":"C. Savin and J. Triesch, “Emergence of task-dependent representations in working memory circuits,” <i>Frontiers in Computational Neuroscience</i>, vol. 8, no. MAY. Frontiers Research Foundation, 2014.","short":"C. Savin, J. Triesch, Frontiers in Computational Neuroscience 8 (2014).","mla":"Savin, Cristina, and Jochen Triesch. “Emergence of Task-Dependent Representations in Working Memory Circuits.” <i>Frontiers in Computational Neuroscience</i>, vol. 8, no. MAY, 57, Frontiers Research Foundation, 2014, doi:<a href=\"https://doi.org/10.3389/fncom.2014.00057\">10.3389/fncom.2014.00057</a>.","apa":"Savin, C., &#38; Triesch, J. (2014). Emergence of task-dependent representations in working memory circuits. <i>Frontiers in Computational Neuroscience</i>. Frontiers Research Foundation. <a href=\"https://doi.org/10.3389/fncom.2014.00057\">https://doi.org/10.3389/fncom.2014.00057</a>","chicago":"Savin, Cristina, and Jochen Triesch. “Emergence of Task-Dependent Representations in Working Memory Circuits.” <i>Frontiers in Computational Neuroscience</i>. Frontiers Research Foundation, 2014. <a href=\"https://doi.org/10.3389/fncom.2014.00057\">https://doi.org/10.3389/fncom.2014.00057</a>.","ama":"Savin C, Triesch J. Emergence of task-dependent representations in working memory circuits. <i>Frontiers in Computational Neuroscience</i>. 2014;8(MAY). doi:<a href=\"https://doi.org/10.3389/fncom.2014.00057\">10.3389/fncom.2014.00057</a>"},"article_number":"57","corr_author":"1","scopus_import":"1","oa":1,"year":"2014","issue":"MAY","date_published":"2014-05-28T00:00:00Z","quality_controlled":"1","intvolume":"         8","date_created":"2018-12-11T11:54:46Z","abstract":[{"text":"A wealth of experimental evidence suggests that working memory circuits preferentially represent information that is behaviorally relevant. Still, we are missing a mechanistic account of how these representations come about. Here we provide a simple explanation for a range of experimental findings, in light of prefrontal circuits adapting to task constraints by reward-dependent learning. In particular, we model a neural network shaped by reward-modulated spike-timing dependent plasticity (r-STDP) and homeostatic plasticity (intrinsic excitability and synaptic scaling). We show that the experimentally-observed neural representations naturally emerge in an initially unstructured circuit as it learns to solve several working memory tasks. These results point to a critical, and previously unappreciated, role for reward-dependent learning in shaping prefrontal cortex activity.","lang":"eng"}],"main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4035833/","open_access":"1"}],"title":"Emergence of task-dependent representations in working memory circuits","volume":8,"publist_id":"5163","publication":"Frontiers in Computational Neuroscience","publisher":"Frontiers Research Foundation","day":"28","_id":"1931"},{"article_processing_charge":"No","author":[{"full_name":"Trotter, Meredith","last_name":"Trotter","first_name":"Meredith"},{"id":"2D0CE020-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel","last_name":"Weissman","full_name":"Weissman, Daniel"},{"last_name":"Peterson","full_name":"Peterson, Grant","first_name":"Grant"},{"full_name":"Peck, Kayla","last_name":"Peck","first_name":"Kayla"},{"full_name":"Masel, Joanna","last_name":"Masel","first_name":"Joanna"}],"date_updated":"2025-09-29T12:10:43Z","department":[{"_id":"NiBa"}],"isi":1,"status":"public","doi":"10.1111/evo.12517","publication_status":"published","oa_version":"Submitted Version","type":"journal_article","month":"12","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","external_id":{"isi":["000346075600001"],"arxiv":["1310.6077"]},"acknowledgement":"Funded by National Institutes of Health. Grant Numbers: R01GM076041, R01GM104040         \r\n\r\nSimons Foundation\r\n\r\n","page":"3357 - 3367","citation":{"chicago":"Trotter, Meredith, Daniel Weissman, Grant Peterson, Kayla Peck, and Joanna Masel. “Cryptic Genetic Variation Can Make &#38;quot;Irreducible Complexity&#38;quot; a Common Mode of Adaptation in Sexual Populations.” <i>Evolution</i>. Wiley-Blackwell, 2014. <a href=\"https://doi.org/10.1111/evo.12517\">https://doi.org/10.1111/evo.12517</a>.","apa":"Trotter, M., Weissman, D., Peterson, G., Peck, K., &#38; Masel, J. (2014). Cryptic genetic variation can make &#38;quot;irreducible complexity&#38;quot; a common mode of adaptation in sexual populations. <i>Evolution</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/evo.12517\">https://doi.org/10.1111/evo.12517</a>","ama":"Trotter M, Weissman D, Peterson G, Peck K, Masel J. Cryptic genetic variation can make &#38;quot;irreducible complexity&#38;quot; a common mode of adaptation in sexual populations. <i>Evolution</i>. 2014;68(12):3357-3367. doi:<a href=\"https://doi.org/10.1111/evo.12517\">10.1111/evo.12517</a>","mla":"Trotter, Meredith, et al. “Cryptic Genetic Variation Can Make &#38;quot;Irreducible Complexity&#38;quot; a Common Mode of Adaptation in Sexual Populations.” <i>Evolution</i>, vol. 68, no. 12, Wiley-Blackwell, 2014, pp. 3357–67, doi:<a href=\"https://doi.org/10.1111/evo.12517\">10.1111/evo.12517</a>.","ieee":"M. Trotter, D. Weissman, G. Peterson, K. Peck, and J. Masel, “Cryptic genetic variation can make &#38;quot;irreducible complexity&#38;quot; a common mode of adaptation in sexual populations,” <i>Evolution</i>, vol. 68, no. 12. Wiley-Blackwell, pp. 3357–3367, 2014.","short":"M. Trotter, D. Weissman, G. Peterson, K. Peck, J. Masel, Evolution 68 (2014) 3357–3367.","ista":"Trotter M, Weissman D, Peterson G, Peck K, Masel J. 2014. Cryptic genetic variation can make &#38;quot;irreducible complexity&#38;quot; a common mode of adaptation in sexual populations. Evolution. 68(12), 3357–3367."},"language":[{"iso":"eng"}],"scopus_import":"1","project":[{"grant_number":"250152","_id":"25B07788-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Limits to selection in biology and in evolutionary computation"}],"oa":1,"date_published":"2014-12-01T00:00:00Z","issue":"12","year":"2014","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1310.6077"}],"date_created":"2018-12-11T11:54:47Z","intvolume":"        68","abstract":[{"text":"The existence of complex (multiple-step) genetic adaptations that are &quot;irreducible&quot; (i.e., all partial combinations are less fit than the original genotype) is one of the longest standing problems in evolutionary biology. In standard genetics parlance, these adaptations require the crossing of a wide adaptive valley of deleterious intermediate stages. Here, we demonstrate, using a simple model, that evolution can cross wide valleys to produce &quot;irreducibly complex&quot; adaptations by making use of previously cryptic mutations. When revealed by an evolutionary capacitor, previously cryptic mutants have higher initial frequencies than do new mutations, bringing them closer to a valley-crossing saddle in allele frequency space. Moreover, simple combinatorics implies an enormous number of candidate combinations exist within available cryptic genetic variation. We model the dynamics of crossing of a wide adaptive valley after a capacitance event using both numerical simulations and analytical approximations. Although individual valley crossing events become less likely as valleys widen, by taking the combinatorics of genotype space into account, we see that revealing cryptic variation can cause the frequent evolution of complex adaptations.","lang":"eng"}],"quality_controlled":"1","publist_id":"5162","volume":68,"title":"Cryptic genetic variation can make &quot;irreducible complexity&quot; a common mode of adaptation in sexual populations","ec_funded":1,"publication":"Evolution","_id":"1932","day":"01","arxiv":1,"publisher":"Wiley-Blackwell"},{"citation":{"ieee":"J. Hatakeyama, Y. Wakamatsu, A. Nagafuchi, R. Kageyama, R. Shigemoto, and K. Shimamura, “Cadherin-based adhesions in the apical endfoot are required for active Notch signaling to control neurogenesis in vertebrates,” <i>Development</i>, vol. 141, no. 8. Company of Biologists, pp. 1671–1682, 2014.","short":"J. Hatakeyama, Y. Wakamatsu, A. Nagafuchi, R. Kageyama, R. Shigemoto, K. Shimamura, Development 141 (2014) 1671–1682.","ista":"Hatakeyama J, Wakamatsu Y, Nagafuchi A, Kageyama R, Shigemoto R, Shimamura K. 2014. Cadherin-based adhesions in the apical endfoot are required for active Notch signaling to control neurogenesis in vertebrates. Development. 141(8), 1671–1682.","mla":"Hatakeyama, Jun, et al. “Cadherin-Based Adhesions in the Apical Endfoot Are Required for Active Notch Signaling to Control Neurogenesis in Vertebrates.” <i>Development</i>, vol. 141, no. 8, Company of Biologists, 2014, pp. 1671–82, doi:<a href=\"https://doi.org/10.1242/dev.102988\">10.1242/dev.102988</a>.","ama":"Hatakeyama J, Wakamatsu Y, Nagafuchi A, Kageyama R, Shigemoto R, Shimamura K. Cadherin-based adhesions in the apical endfoot are required for active Notch signaling to control neurogenesis in vertebrates. <i>Development</i>. 2014;141(8):1671-1682. doi:<a href=\"https://doi.org/10.1242/dev.102988\">10.1242/dev.102988</a>","apa":"Hatakeyama, J., Wakamatsu, Y., Nagafuchi, A., Kageyama, R., Shigemoto, R., &#38; Shimamura, K. (2014). Cadherin-based adhesions in the apical endfoot are required for active Notch signaling to control neurogenesis in vertebrates. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.102988\">https://doi.org/10.1242/dev.102988</a>","chicago":"Hatakeyama, Jun, Yoshio Wakamatsu, Akira Nagafuchi, Ryoichiro Kageyama, Ryuichi Shigemoto, and Kenji Shimamura. “Cadherin-Based Adhesions in the Apical Endfoot Are Required for Active Notch Signaling to Control Neurogenesis in Vertebrates.” <i>Development</i>. Company of Biologists, 2014. <a href=\"https://doi.org/10.1242/dev.102988\">https://doi.org/10.1242/dev.102988</a>."},"language":[{"iso":"eng"}],"scopus_import":"1","month":"04","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","page":"1671 - 1682","external_id":{"isi":["000334347900007"]},"isi":1,"status":"public","publication_status":"published","doi":"10.1242/dev.102988","type":"journal_article","oa_version":"None","article_processing_charge":"No","author":[{"first_name":"Jun","full_name":"Hatakeyama, Jun","last_name":"Hatakeyama"},{"first_name":"Yoshio","full_name":"Wakamatsu, Yoshio","last_name":"Wakamatsu"},{"first_name":"Akira","last_name":"Nagafuchi","full_name":"Nagafuchi, Akira"},{"first_name":"Ryoichiro","full_name":"Kageyama, Ryoichiro","last_name":"Kageyama"},{"full_name":"Shigemoto, Ryuichi","last_name":"Shigemoto","first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444"},{"first_name":"Kenji","last_name":"Shimamura","full_name":"Shimamura, Kenji"}],"date_updated":"2025-09-29T12:10:15Z","department":[{"_id":"RySh"}],"_id":"1933","publisher":"Company of Biologists","day":"01","volume":141,"publist_id":"5161","title":"Cadherin-based adhesions in the apical endfoot are required for active Notch signaling to control neurogenesis in vertebrates","publication":"Development","date_created":"2018-12-11T11:54:47Z","intvolume":"       141","abstract":[{"text":"The development of the vertebrate brain requires an exquisite balance between proliferation and differentiation of neural progenitors. Notch signaling plays a pivotal role in regulating this balance, yet the interaction between signaling and receiving cells remains poorly understood. We have found that numerous nascent neurons and/or intermediate neurogenic progenitors expressing the ligand of Notch retain apical endfeet transiently at the ventricular lumen that form adherens junctions (AJs) with the endfeet of progenitors. Forced detachment of the apical endfeet of those differentiating cells by disrupting AJs resulted in precocious neurogenesis that was preceded by the downregulation of Notch signaling. Both Notch1 and its ligand Dll1 are distributed around AJs in the apical endfeet, and these proteins physically interact with ZO-1, a constituent of the AJ. Furthermore, live imaging of a fluorescently tagged Notch1 demonstrated its trafficking from the apical endfoot to the nucleus upon cleavage. Our results identified the apical endfoot as the central site of active Notch signaling to securely prohibit inappropriate differentiation of neural progenitors.","lang":"eng"}],"quality_controlled":"1","date_published":"2014-04-01T00:00:00Z","year":"2014","issue":"8"},{"isi":1,"status":"public","publication_status":"published","doi":"10.1016/j.cub.2014.04.002","type":"journal_article","oa_version":"None","author":[{"last_name":"Marhavy","full_name":"Marhavy, Peter","first_name":"Peter","id":"3F45B078-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5227-5741"},{"first_name":"Jérôme","last_name":"Duclercq","full_name":"Duclercq, Jérôme"},{"first_name":"Benjamin","last_name":"Weller","full_name":"Weller, Benjamin"},{"first_name":"Elena","full_name":"Feraru, Elena","last_name":"Feraru"},{"first_name":"Agnieszka","last_name":"Bielach","full_name":"Bielach, Agnieszka"},{"full_name":"Offringa, Remko","last_name":"Offringa","first_name":"Remko"},{"full_name":"Friml, Jirí","last_name":"Friml","first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596"},{"last_name":"Schwechheimer","full_name":"Schwechheimer, Claus","first_name":"Claus"},{"last_name":"Murphy","full_name":"Murphy, Angus","first_name":"Angus"},{"first_name":"Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8510-9739","full_name":"Benková, Eva","last_name":"Benková"}],"article_processing_charge":"No","date_updated":"2025-09-29T12:09:47Z","department":[{"_id":"EvBe"},{"_id":"JiFr"}],"citation":{"ieee":"P. Marhavý <i>et al.</i>, “Cytokinin controls polarity of PIN1-dependent Auxin transport during lateral root organogenesis,” <i>Current Biology</i>, vol. 24, no. 9. Cell Press, pp. 1031–1037, 2014.","ista":"Marhavý P, Duclercq J, Weller B, Feraru E, Bielach A, Offringa R, Friml J, Schwechheimer C, Murphy A, Benková E. 2014. Cytokinin controls polarity of PIN1-dependent Auxin transport during lateral root organogenesis. Current Biology. 24(9), 1031–1037.","short":"P. Marhavý, J. Duclercq, B. Weller, E. Feraru, A. Bielach, R. Offringa, J. Friml, C. Schwechheimer, A. Murphy, E. Benková, Current Biology 24 (2014) 1031–1037.","mla":"Marhavý, Peter, et al. “Cytokinin Controls Polarity of PIN1-Dependent Auxin Transport during Lateral Root Organogenesis.” <i>Current Biology</i>, vol. 24, no. 9, Cell Press, 2014, pp. 1031–37, doi:<a href=\"https://doi.org/10.1016/j.cub.2014.04.002\">10.1016/j.cub.2014.04.002</a>.","apa":"Marhavý, P., Duclercq, J., Weller, B., Feraru, E., Bielach, A., Offringa, R., … Benková, E. (2014). Cytokinin controls polarity of PIN1-dependent Auxin transport during lateral root organogenesis. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2014.04.002\">https://doi.org/10.1016/j.cub.2014.04.002</a>","chicago":"Marhavý, Peter, Jérôme Duclercq, Benjamin Weller, Elena Feraru, Agnieszka Bielach, Remko Offringa, Jiří Friml, Claus Schwechheimer, Angus Murphy, and Eva Benková. “Cytokinin Controls Polarity of PIN1-Dependent Auxin Transport during Lateral Root Organogenesis.” <i>Current Biology</i>. Cell Press, 2014. <a href=\"https://doi.org/10.1016/j.cub.2014.04.002\">https://doi.org/10.1016/j.cub.2014.04.002</a>.","ama":"Marhavý P, Duclercq J, Weller B, et al. Cytokinin controls polarity of PIN1-dependent Auxin transport during lateral root organogenesis. <i>Current Biology</i>. 2014;24(9):1031-1037. doi:<a href=\"https://doi.org/10.1016/j.cub.2014.04.002\">10.1016/j.cub.2014.04.002</a>"},"language":[{"iso":"eng"}],"scopus_import":"1","corr_author":"1","project":[{"_id":"253FCA6A-B435-11E9-9278-68D0E5697425","name":"Hormonal cross-talk in plant organogenesis","call_identifier":"FP7","grant_number":"207362"}],"month":"05","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","page":"1031 - 1037","external_id":{"isi":["000335542300029"]},"intvolume":"        24","date_created":"2018-12-11T11:54:48Z","abstract":[{"lang":"eng","text":"The plant hormones auxin and cytokinin mutually coordinate their activities to control various aspects of development [1-9], and their crosstalk occurs at multiple levels [10, 11]. Cytokinin-mediated modulation of auxin transport provides an efficient means to regulate auxin distribution in plant organs. Here, we demonstrate that cytokinin does not merely control the overall auxin flow capacity, but might also act as a polarizing cue and control the auxin stream directionality during plant organogenesis. Cytokinin enhances the PIN-FORMED1 (PIN1) auxin transporter depletion at specific polar domains, thus rearranging the cellular PIN polarities and directly regulating the auxin flow direction. This selective cytokinin sensitivity correlates with the PIN protein phosphorylation degree. PIN1 phosphomimicking mutations, as well as enhanced phosphorylation in plants with modulated activities of PIN-specific kinases and phosphatases, desensitize PIN1 to cytokinin. Our results reveal conceptually novel, cytokinin-driven polarization mechanism that operates in developmental processes involving rapid auxin stream redirection, such as lateral root organogenesis, in which a gradual PIN polarity switch defines the growth axis of the newly formed organ."}],"quality_controlled":"1","date_published":"2014-05-05T00:00:00Z","year":"2014","issue":"9","_id":"1934","publisher":"Cell Press","day":"05","volume":24,"publist_id":"5160","ec_funded":1,"title":"Cytokinin controls polarity of PIN1-dependent Auxin transport during lateral root organogenesis","publication":"Current Biology"},{"date_published":"2014-10-01T00:00:00Z","year":"2014","oa":1,"abstract":[{"lang":"eng","text":"We consider Ising models in d = 2 and d = 3 dimensions with nearest neighbor ferromagnetic and long-range antiferromagnetic interactions, the latter decaying as (distance)-p, p &gt; 2d, at large distances. If the strength J of the ferromagnetic interaction is larger than a critical value J c, then the ground state is homogeneous. It has been conjectured that when J is smaller than but close to J c, the ground state is periodic and striped, with stripes of constant width h = h(J), and h → ∞ as J → Jc -. (In d = 3 stripes mean slabs, not columns.) Here we rigorously prove that, if we normalize the energy in such a way that the energy of the homogeneous state is zero, then the ratio e 0(J)/e S(J) tends to 1 as J → Jc -, with e S(J) being the energy per site of the optimal periodic striped/slabbed state and e 0(J) the actual ground state energy per site of the system. Our proof comes with explicit bounds on the difference e 0(J)-e S(J) at small but positive J c-J, and also shows that in this parameter range the ground state is striped/slabbed in a certain sense: namely, if one looks at a randomly chosen window, of suitable size ℓ (very large compared to the optimal stripe size h(J)), one finds a striped/slabbed state with high probability."}],"date_created":"2018-12-11T11:54:48Z","intvolume":"       331","quality_controlled":"1","publication":"Communications in Mathematical Physics","volume":331,"publist_id":"5159","article_type":"original","title":"Formation of stripes and slabs near the ferromagnetic transition","_id":"1935","day":"01","publisher":"Springer","arxiv":1,"ddc":["510"],"date_updated":"2025-09-29T12:08:54Z","department":[{"_id":"RoSe"}],"article_processing_charge":"No","author":[{"first_name":"Alessandro","last_name":"Giuliani","full_name":"Giuliani, Alessandro"},{"first_name":"Élliott","full_name":"Lieb, Élliott","last_name":"Lieb"},{"orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Seiringer","full_name":"Seiringer, Robert"}],"doi":"10.1007/s00220-014-1923-2","publication_status":"published","oa_version":"Published Version","type":"journal_article","isi":1,"status":"public","external_id":{"isi":["000339732500011"],"arxiv":["1304.6344"]},"page":"333 - 350","acknowledgement":"2014 by the authors. This paper may be reproduced, in its entirety, for non-commercial purposes.\r\n\r\nThe research leading to these results has received funding from the European Research\r\nCouncil under the European Union’s Seventh Framework Programme ERC Starting Grant CoMBoS (Grant Agreement No. 239694; A.G. and R.S.), the U.S. National Science Foundation (Grant PHY 0965859; E.H.L.), the Simons Foundation (Grant # 230207; E.H.L) and the NSERC (R.S.). The work is part of a project started in collaboration with Joel Lebowitz, whom we thank for many useful discussions and for his constant encouragement.","file":[{"creator":"dernst","content_type":"application/pdf","file_id":"11409","access_level":"open_access","success":1,"date_created":"2022-05-24T08:30:40Z","relation":"main_file","checksum":"c8423271cd1e1ba9e44c47af75efe7b6","file_size":334064,"file_name":"2014_CommMathPhysics_Giuliani.pdf","date_updated":"2022-05-24T08:30:40Z"}],"publication_identifier":{"eissn":["1432-0916"],"issn":["0010-3616"]},"month":"10","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","file_date_updated":"2022-05-24T08:30:40Z","has_accepted_license":"1","citation":{"ama":"Giuliani A, Lieb É, Seiringer R. Formation of stripes and slabs near the ferromagnetic transition. <i>Communications in Mathematical Physics</i>. 2014;331:333-350. doi:<a href=\"https://doi.org/10.1007/s00220-014-1923-2\">10.1007/s00220-014-1923-2</a>","apa":"Giuliani, A., Lieb, É., &#38; Seiringer, R. (2014). Formation of stripes and slabs near the ferromagnetic transition. <i>Communications in Mathematical Physics</i>. Springer. <a href=\"https://doi.org/10.1007/s00220-014-1923-2\">https://doi.org/10.1007/s00220-014-1923-2</a>","chicago":"Giuliani, Alessandro, Élliott Lieb, and Robert Seiringer. “Formation of Stripes and Slabs near the Ferromagnetic Transition.” <i>Communications in Mathematical Physics</i>. Springer, 2014. <a href=\"https://doi.org/10.1007/s00220-014-1923-2\">https://doi.org/10.1007/s00220-014-1923-2</a>.","ieee":"A. Giuliani, É. Lieb, and R. Seiringer, “Formation of stripes and slabs near the ferromagnetic transition,” <i>Communications in Mathematical Physics</i>, vol. 331. Springer, pp. 333–350, 2014.","short":"A. Giuliani, É. Lieb, R. Seiringer, Communications in Mathematical Physics 331 (2014) 333–350.","ista":"Giuliani A, Lieb É, Seiringer R. 2014. Formation of stripes and slabs near the ferromagnetic transition. Communications in Mathematical Physics. 331, 333–350.","mla":"Giuliani, Alessandro, et al. “Formation of Stripes and Slabs near the Ferromagnetic Transition.” <i>Communications in Mathematical Physics</i>, vol. 331, Springer, 2014, pp. 333–50, doi:<a href=\"https://doi.org/10.1007/s00220-014-1923-2\">10.1007/s00220-014-1923-2</a>."},"language":[{"iso":"eng"}]},{"oa":1,"issue":"3","year":"2014","date_published":"2014-02-13T00:00:00Z","quality_controlled":"1","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4014306/","open_access":"1"}],"abstract":[{"text":"The social intelligence hypothesis states that the need to cope with complexities of social life has driven the evolution of advanced cognitive abilities. It is usually invoked in the context of challenges arising from complex intragroup structures, hierarchies, and alliances. However, a fundamental aspect of group living remains largely unexplored as a driving force in cognitive evolution: the competition between individuals searching for resources (producers) and conspecifics that parasitize their findings (scroungers). In populations of social foragers, abilities that enable scroungers to steal by outsmarting producers, and those allowing producers to prevent theft by outsmarting scroungers, are likely to be beneficial and may fuel a cognitive arms race. Using analytical theory and agent-based simulations, we present a general model for such a race that is driven by the producer-scrounger game and show that the race's plausibility is dramatically affected by the nature of the evolving abilities. If scrounging and scrounging avoidance rely on separate, strategy-specific cognitive abilities, arms races are short-lived and have a limited effect on cognition. However, general cognitive abilities that facilitate both scrounging and scrounging avoidance undergo stable, long-lasting arms races. Thus, ubiquitous foraging interactions may lead to the evolution of general cognitive abilities in social animals, without the requirement of complex intragroup structures.","lang":"eng"}],"intvolume":"        25","date_created":"2018-12-11T11:54:48Z","title":"An arms race between producers and scroungers can drive the evolution of social cognition","ec_funded":1,"publist_id":"5157","volume":25,"publication":"Behavioral Ecology","day":"13","publisher":"Oxford University Press","_id":"1936","author":[{"first_name":"Michal","full_name":"Arbilly, Michal","last_name":"Arbilly"},{"id":"2D0CE020-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel","last_name":"Weissman","full_name":"Weissman, Daniel"},{"first_name":"Marcus","full_name":"Feldman, Marcus","last_name":"Feldman"},{"last_name":"Grodzinski","full_name":"Grodzinski, Uri","first_name":"Uri"}],"article_processing_charge":"No","department":[{"_id":"NiBa"}],"date_updated":"2025-09-29T12:07:50Z","status":"public","isi":1,"oa_version":"Submitted Version","type":"journal_article","doi":"10.1093/beheco/aru002","publication_status":"published","month":"02","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","external_id":{"isi":["000336486100012"]},"page":"487 - 495","language":[{"iso":"eng"}],"citation":{"ama":"Arbilly M, Weissman D, Feldman M, Grodzinski U. An arms race between producers and scroungers can drive the evolution of social cognition. <i>Behavioral Ecology</i>. 2014;25(3):487-495. doi:<a href=\"https://doi.org/10.1093/beheco/aru002\">10.1093/beheco/aru002</a>","chicago":"Arbilly, Michal, Daniel Weissman, Marcus Feldman, and Uri Grodzinski. “An Arms Race between Producers and Scroungers Can Drive the Evolution of Social Cognition.” <i>Behavioral Ecology</i>. Oxford University Press, 2014. <a href=\"https://doi.org/10.1093/beheco/aru002\">https://doi.org/10.1093/beheco/aru002</a>.","apa":"Arbilly, M., Weissman, D., Feldman, M., &#38; Grodzinski, U. (2014). An arms race between producers and scroungers can drive the evolution of social cognition. <i>Behavioral Ecology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/beheco/aru002\">https://doi.org/10.1093/beheco/aru002</a>","mla":"Arbilly, Michal, et al. “An Arms Race between Producers and Scroungers Can Drive the Evolution of Social Cognition.” <i>Behavioral Ecology</i>, vol. 25, no. 3, Oxford University Press, 2014, pp. 487–95, doi:<a href=\"https://doi.org/10.1093/beheco/aru002\">10.1093/beheco/aru002</a>.","ista":"Arbilly M, Weissman D, Feldman M, Grodzinski U. 2014. An arms race between producers and scroungers can drive the evolution of social cognition. Behavioral Ecology. 25(3), 487–495.","short":"M. Arbilly, D. Weissman, M. Feldman, U. Grodzinski, Behavioral Ecology 25 (2014) 487–495.","ieee":"M. Arbilly, D. Weissman, M. Feldman, and U. Grodzinski, “An arms race between producers and scroungers can drive the evolution of social cognition,” <i>Behavioral Ecology</i>, vol. 25, no. 3. Oxford University Press, pp. 487–495, 2014."},"project":[{"_id":"25B07788-B435-11E9-9278-68D0E5697425","name":"Limits to selection in biology and in evolutionary computation","call_identifier":"FP7","grant_number":"250152"}],"scopus_import":"1"},{"day":"01","arxiv":1,"publisher":"Springer","_id":"1937","publication":"Communications in Mathematical Physics","title":"Edge universality of beta ensembles","volume":332,"publist_id":"5158","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1306.5728"}],"intvolume":"       332","abstract":[{"lang":"eng","text":"We prove the edge universality of the beta ensembles for any β ≥ 1, provided that the limiting spectrum is supported on a single interval, and the external potential is C4 and regular. We also prove that the edge universality holds for generalized Wigner matrices for all symmetry classes. Moreover, our results allow us to extend bulk universality for beta ensembles from analytic potentials to potentials in class C4."}],"date_created":"2018-12-11T11:54:48Z","issue":"1","year":"2014","date_published":"2014-11-01T00:00:00Z","oa":1,"project":[{"grant_number":"SFB-TR3-TP10B","_id":"25BDE9A4-B435-11E9-9278-68D0E5697425","name":"Glutamaterge synaptische Übertragung und Plastizität in hippocampalen Mikroschaltkreisen"}],"scopus_import":"1","language":[{"iso":"eng"}],"citation":{"chicago":"Bourgade, Paul, László Erdös, and Horngtzer Yau. “Edge Universality of Beta Ensembles.” <i>Communications in Mathematical Physics</i>. Springer, 2014. <a href=\"https://doi.org/10.1007/s00220-014-2120-z\">https://doi.org/10.1007/s00220-014-2120-z</a>.","apa":"Bourgade, P., Erdös, L., &#38; Yau, H. (2014). Edge universality of beta ensembles. <i>Communications in Mathematical Physics</i>. Springer. <a href=\"https://doi.org/10.1007/s00220-014-2120-z\">https://doi.org/10.1007/s00220-014-2120-z</a>","ama":"Bourgade P, Erdös L, Yau H. Edge universality of beta ensembles. <i>Communications in Mathematical Physics</i>. 2014;332(1):261-353. doi:<a href=\"https://doi.org/10.1007/s00220-014-2120-z\">10.1007/s00220-014-2120-z</a>","mla":"Bourgade, Paul, et al. “Edge Universality of Beta Ensembles.” <i>Communications in Mathematical Physics</i>, vol. 332, no. 1, Springer, 2014, pp. 261–353, doi:<a href=\"https://doi.org/10.1007/s00220-014-2120-z\">10.1007/s00220-014-2120-z</a>.","ieee":"P. Bourgade, L. Erdös, and H. Yau, “Edge universality of beta ensembles,” <i>Communications in Mathematical Physics</i>, vol. 332, no. 1. Springer, pp. 261–353, 2014.","ista":"Bourgade P, Erdös L, Yau H. 2014. Edge universality of beta ensembles. Communications in Mathematical Physics. 332(1), 261–353.","short":"P. Bourgade, L. Erdös, H. Yau, Communications in Mathematical Physics 332 (2014) 261–353."},"external_id":{"arxiv":["1306.5728"],"isi":["000341491700007"]},"page":"261 - 353","month":"11","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Submitted Version","type":"journal_article","doi":"10.1007/s00220-014-2120-z","publication_status":"published","status":"public","isi":1,"department":[{"_id":"LaEr"}],"date_updated":"2025-09-29T12:08:21Z","article_processing_charge":"No","author":[{"first_name":"Paul","full_name":"Bourgade, Paul","last_name":"Bourgade"},{"first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","last_name":"Erdös","full_name":"Erdös, László"},{"first_name":"Horngtzer","last_name":"Yau","full_name":"Yau, Horngtzer"}]},{"month":"05","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1460-2199"],"issn":["1047-3211"]},"OA_type":"closed access","external_id":{"pmid":["23302812 "]},"page":"1138-1151","language":[{"iso":"eng"}],"citation":{"mla":"Fothergill, Thomas, et al. “Netrin-DCC Signaling Regulates Corpus Callosum Formation through Attraction of Pioneering Axons and by Modulating Slit2-Mediated Repulsion.” <i>Cerebral Cortex</i>, vol. 24, no. 5, Oxford University Press, 2014, pp. 1138–51, doi:<a href=\"https://doi.org/10.1093/cercor/bhs395\">10.1093/cercor/bhs395</a>.","short":"T. Fothergill, A.-L.S. Donahoo, A.M. Douglass, O. Zalucki, J. Yuan, T. Shu, G.J. Goodhill, L.J. Richards, Cerebral Cortex 24 (2014) 1138–1151.","ieee":"T. Fothergill <i>et al.</i>, “Netrin-DCC signaling regulates corpus callosum formation through attraction of pioneering axons and by modulating Slit2-mediated repulsion,” <i>Cerebral Cortex</i>, vol. 24, no. 5. Oxford University Press, pp. 1138–1151, 2014.","ista":"Fothergill T, Donahoo A-LS, Douglass AM, Zalucki O, Yuan J, Shu T, Goodhill GJ, Richards LJ. 2014. Netrin-DCC signaling regulates corpus callosum formation through attraction of pioneering axons and by modulating Slit2-mediated repulsion. Cerebral Cortex. 24(5), 1138–1151.","ama":"Fothergill T, Donahoo A-LS, Douglass AM, et al. Netrin-DCC signaling regulates corpus callosum formation through attraction of pioneering axons and by modulating Slit2-mediated repulsion. <i>Cerebral Cortex</i>. 2014;24(5):1138-1151. doi:<a href=\"https://doi.org/10.1093/cercor/bhs395\">10.1093/cercor/bhs395</a>","chicago":"Fothergill, Thomas, Amber-Lee S. Donahoo, Amelia M. Douglass, Oressia Zalucki, Jiajia Yuan, Tianzhi Shu, Geoffrey J. Goodhill, and Linda J. Richards. “Netrin-DCC Signaling Regulates Corpus Callosum Formation through Attraction of Pioneering Axons and by Modulating Slit2-Mediated Repulsion.” <i>Cerebral Cortex</i>. Oxford University Press, 2014. <a href=\"https://doi.org/10.1093/cercor/bhs395\">https://doi.org/10.1093/cercor/bhs395</a>.","apa":"Fothergill, T., Donahoo, A.-L. S., Douglass, A. M., Zalucki, O., Yuan, J., Shu, T., … Richards, L. J. (2014). Netrin-DCC signaling regulates corpus callosum formation through attraction of pioneering axons and by modulating Slit2-mediated repulsion. <i>Cerebral Cortex</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/cercor/bhs395\">https://doi.org/10.1093/cercor/bhs395</a>"},"scopus_import":"1","extern":"1","article_processing_charge":"No","author":[{"full_name":"Fothergill, Thomas","last_name":"Fothergill","first_name":"Thomas"},{"last_name":"Donahoo","full_name":"Donahoo, Amber-Lee S.","first_name":"Amber-Lee S."},{"id":"de5f6fda-80fb-11ef-996f-a8c4ecd8e289","orcid":"0000-0001-5398-6473","first_name":"Amelia May Barnett","last_name":"Douglass","full_name":"Douglass, Amelia May Barnett"},{"first_name":"Oressia","full_name":"Zalucki, Oressia","last_name":"Zalucki"},{"last_name":"Yuan","full_name":"Yuan, Jiajia","first_name":"Jiajia"},{"first_name":"Tianzhi","last_name":"Shu","full_name":"Shu, Tianzhi"},{"full_name":"Goodhill, Geoffrey J.","last_name":"Goodhill","first_name":"Geoffrey J."},{"last_name":"Richards","full_name":"Richards, Linda J.","first_name":"Linda J."}],"date_updated":"2025-07-10T11:51:43Z","status":"public","oa_version":"None","type":"journal_article","doi":"10.1093/cercor/bhs395","publication_status":"published","article_type":"original","title":"Netrin-DCC signaling regulates corpus callosum formation through attraction of pioneering axons and by modulating Slit2-mediated repulsion","volume":24,"publication":"Cerebral Cortex","pmid":1,"day":"01","publisher":"Oxford University Press","_id":"19475","issue":"5","year":"2014","date_published":"2014-05-01T00:00:00Z","quality_controlled":"1","abstract":[{"text":"The left and right sides of the nervous system communicate via commissural axons that cross the midline during development using evolutionarily conserved molecules. These guidance cues have been particularly well studied in the mammalian spinal cord, but it remains unclear whether these guidance mechanisms for commissural axons are similar in the developing forebrain, in particular for the corpus callosum, the largest and most important commissure for cortical function. Here, we show that Netrin1 initially attracts callosal pioneering axons derived from the cingulate cortex, but surprisingly is not attractive for the neocortical callosal axons that make up the bulk of the projection. Instead, we show that Netrin-deleted in colorectal cancer signaling acts in a fundamentally different manner, to prevent the Slit2-mediated repulsion of precrossing axons thereby allowing them to approach and cross the midline. These results provide the first evidence for how callosal axons integrate multiple guidance cues to navigate the midline.","lang":"eng"}],"date_created":"2025-04-03T12:31:58Z","intvolume":"        24"},{"language":[{"iso":"eng"}],"citation":{"ama":"Erdös L. Random matrices, log-gases and Hölder regularity. In: <i>Proceedings of the International Congress of Mathematicians</i>. Vol 3. International Congress of Mathematicians; 2014:214-236.","apa":"Erdös, L. (2014). Random matrices, log-gases and Hölder regularity. In <i>Proceedings of the International Congress of Mathematicians</i> (Vol. 3, pp. 214–236). Seoul, Korea: International Congress of Mathematicians.","chicago":"Erdös, László. “Random Matrices, Log-Gases and Hölder Regularity.” In <i>Proceedings of the International Congress of Mathematicians</i>, 3:214–36. International Congress of Mathematicians, 2014.","ista":"Erdös L. 2014. Random matrices, log-gases and Hölder regularity. Proceedings of the International Congress of Mathematicians. ICM: International Congress of Mathematicians vol. 3, 214–236.","ieee":"L. Erdös, “Random matrices, log-gases and Hölder regularity,” in <i>Proceedings of the International Congress of Mathematicians</i>, Seoul, Korea, 2014, vol. 3, pp. 214–236.","short":"L. Erdös, in:, Proceedings of the International Congress of Mathematicians, International Congress of Mathematicians, 2014, pp. 214–236.","mla":"Erdös, László. “Random Matrices, Log-Gases and Hölder Regularity.” <i>Proceedings of the International Congress of Mathematicians</i>, vol. 3, International Congress of Mathematicians, 2014, pp. 214–36."},"project":[{"grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7"}],"scopus_import":"1","conference":{"end_date":"2014-08-21","name":"ICM: International Congress of Mathematicians","start_date":"2014-08-13","location":"Seoul, Korea"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"08","external_id":{"arxiv":["1407.5752"]},"acknowledgement":"The author is partially supported by SFB-TR 12 Grant of the German Research Council.","page":"214 - 236","status":"public","oa_version":"Submitted Version","type":"conference","publication_status":"published","author":[{"last_name":"Erdös","full_name":"Erdös, László","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603"}],"article_processing_charge":"No","department":[{"_id":"LaEr"}],"date_updated":"2025-06-11T07:52:59Z","day":"01","publisher":"International Congress of Mathematicians","arxiv":1,"_id":"1507","title":"Random matrices, log-gases and Hölder regularity","ec_funded":1,"volume":3,"publist_id":"5670","publication":"Proceedings of the International Congress of Mathematicians","quality_controlled":"1","main_file_link":[{"url":"http://arxiv.org/abs/1407.5752","open_access":"1"}],"intvolume":"         3","date_created":"2018-12-11T11:52:25Z","abstract":[{"lang":"eng","text":"The Wigner-Dyson-Gaudin-Mehta conjecture asserts that the local eigenvalue statistics of large real and complex Hermitian matrices with independent, identically distributed entries are universal in a sense that they depend only on the symmetry class of the matrix and otherwise are independent of the details of the distribution. We present the recent solution to this half-century old conjecture. We explain how stochastic tools, such as the Dyson Brownian motion, and PDE ideas, such as De Giorgi-Nash-Moser regularity theory, were combined in the solution. We also show related results for log-gases that represent a universal model for strongly correlated systems. Finally, in the spirit of Wigner’s original vision, we discuss the extensions of these universality results to more realistic physical systems such as random band matrices."}],"oa":1,"year":"2014","date_published":"2014-08-01T00:00:00Z"},{"citation":{"mla":"Bräunlich, Gerhard, et al. “On the BCS Gap Equation for Superfluid Fermionic Gases.” <i>Proceedings of the QMath12 Conference</i>, World Scientific Publishing, 2014, pp. 127–37, doi:<a href=\"https://doi.org/10.1142/9789814618144_0007\">10.1142/9789814618144_0007</a>.","ieee":"G. Bräunlich, C. Hainzl, and R. Seiringer, “On the BCS gap equation for superfluid fermionic gases,” in <i>Proceedings of the QMath12 Conference</i>, Berlin, Germany, 2014, pp. 127–137.","short":"G. Bräunlich, C. Hainzl, R. Seiringer, in:, Proceedings of the QMath12 Conference, World Scientific Publishing, 2014, pp. 127–137.","ista":"Bräunlich G, Hainzl C, Seiringer R. 2014. On the BCS gap equation for superfluid fermionic gases. Proceedings of the QMath12 Conference. QMath: Mathematical Results in Quantum Physics, 127–137.","ama":"Bräunlich G, Hainzl C, Seiringer R. On the BCS gap equation for superfluid fermionic gases. In: <i>Proceedings of the QMath12 Conference</i>. World Scientific Publishing; 2014:127-137. doi:<a href=\"https://doi.org/10.1142/9789814618144_0007\">10.1142/9789814618144_0007</a>","chicago":"Bräunlich, Gerhard, Christian Hainzl, and Robert Seiringer. “On the BCS Gap Equation for Superfluid Fermionic Gases.” In <i>Proceedings of the QMath12 Conference</i>, 127–37. World Scientific Publishing, 2014. <a href=\"https://doi.org/10.1142/9789814618144_0007\">https://doi.org/10.1142/9789814618144_0007</a>.","apa":"Bräunlich, G., Hainzl, C., &#38; Seiringer, R. (2014). On the BCS gap equation for superfluid fermionic gases. In <i>Proceedings of the QMath12 Conference</i> (pp. 127–137). Berlin, Germany: World Scientific Publishing. <a href=\"https://doi.org/10.1142/9789814618144_0007\">https://doi.org/10.1142/9789814618144_0007</a>"},"language":[{"iso":"eng"}],"_id":"1516","publisher":"World Scientific Publishing","arxiv":1,"day":"01","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","month":"01","publist_id":"5661","conference":{"start_date":"2013-09-10","location":"Berlin, Germany","name":"QMath: Mathematical Results in Quantum Physics","end_date":"2013-09-13"},"title":"On the BCS gap equation for superfluid fermionic gases","publication":"Proceedings of the QMath12 Conference","page":"127 - 137","external_id":{"arxiv":["1403.2563"]},"status":"public","date_created":"2018-12-11T11:52:28Z","abstract":[{"text":"We present a rigorous derivation of the BCS gap equation for superfluid fermionic gases with point interactions. Our starting point is the BCS energy functional, whose minimizer we investigate in the limit when the range of the interaction potential goes to zero.\r\n","lang":"eng"}],"publication_status":"published","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1403.2563"}],"doi":"10.1142/9789814618144_0007","type":"conference","quality_controlled":"1","oa_version":"Preprint","article_processing_charge":"No","author":[{"full_name":"Bräunlich, Gerhard","last_name":"Bräunlich","first_name":"Gerhard"},{"full_name":"Hainzl, Christian","last_name":"Hainzl","first_name":"Christian"},{"orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","full_name":"Seiringer, Robert","last_name":"Seiringer"}],"oa":1,"date_published":"2014-01-01T00:00:00Z","date_updated":"2021-01-12T06:51:19Z","year":"2014","department":[{"_id":"RoSe"}]},{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1021/jo500773t"}],"abstract":[{"lang":"eng","text":"The copper-catalyzed diboration of ketones followed by an acid-catalyzed elimination leads to the formation of 1,1-disubstituted and trisubstituted vinyl boronate esters with moderate to good yields and selectivity. Addition of tosic acid to the crude diboration products provides the corresponding vinyl boronate esters upon elimination. The trisubstituted vinyl boronate esters are formed as the (Z)-olefin isomer, which was established by subjecting the products to a Suzuki–Miyaura coupling reaction to obtain alkenes of known geometry."}],"intvolume":"        79","date_created":"2024-03-21T07:58:31Z","quality_controlled":"1","oa":1,"date_published":"2014-06-10T00:00:00Z","issue":"15","year":"2014","_id":"15161","day":"10","publisher":"American Chemical Society","volume":79,"article_type":"letter_note","title":"Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters","keyword":["Organic Chemistry"],"publication":"The Journal of Organic Chemistry","status":"public","doi":"10.1021/jo500773t","publication_status":"published","oa_version":"Published Version","type":"journal_article","article_processing_charge":"No","author":[{"first_name":"Weiye","last_name":"Guan","full_name":"Guan, Weiye"},{"last_name":"Michael","full_name":"Michael, Alicia Kathleen","id":"6437c950-2a03-11ee-914d-d6476dd7b75c","first_name":"Alicia Kathleen"},{"last_name":"McIntosh","full_name":"McIntosh, Melissa L.","first_name":"Melissa L."},{"first_name":"Liza","full_name":"Koren-Selfridge, Liza","last_name":"Koren-Selfridge"},{"last_name":"Scott","full_name":"Scott, John P.","first_name":"John P."},{"last_name":"Clark","full_name":"Clark, Timothy B.","first_name":"Timothy B."}],"date_updated":"2024-03-25T11:50:01Z","citation":{"ama":"Guan W, Michael AK, McIntosh ML, Koren-Selfridge L, Scott JP, Clark TB. Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters. <i>The Journal of Organic Chemistry</i>. 2014;79(15):7199-7204. doi:<a href=\"https://doi.org/10.1021/jo500773t\">10.1021/jo500773t</a>","chicago":"Guan, Weiye, Alicia K. Michael, Melissa L. McIntosh, Liza Koren-Selfridge, John P. Scott, and Timothy B. Clark. “Stereoselective Formation of Trisubstituted Vinyl Boronate Esters by the Acid-Mediated Elimination of α-Hydroxyboronate Esters.” <i>The Journal of Organic Chemistry</i>. American Chemical Society, 2014. <a href=\"https://doi.org/10.1021/jo500773t\">https://doi.org/10.1021/jo500773t</a>.","apa":"Guan, W., Michael, A. K., McIntosh, M. L., Koren-Selfridge, L., Scott, J. P., &#38; Clark, T. B. (2014). Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters. <i>The Journal of Organic Chemistry</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jo500773t\">https://doi.org/10.1021/jo500773t</a>","mla":"Guan, Weiye, et al. “Stereoselective Formation of Trisubstituted Vinyl Boronate Esters by the Acid-Mediated Elimination of α-Hydroxyboronate Esters.” <i>The Journal of Organic Chemistry</i>, vol. 79, no. 15, American Chemical Society, 2014, pp. 7199–204, doi:<a href=\"https://doi.org/10.1021/jo500773t\">10.1021/jo500773t</a>.","short":"W. Guan, A.K. Michael, M.L. McIntosh, L. Koren-Selfridge, J.P. Scott, T.B. Clark, The Journal of Organic Chemistry 79 (2014) 7199–7204.","ieee":"W. Guan, A. K. Michael, M. L. McIntosh, L. Koren-Selfridge, J. P. Scott, and T. B. Clark, “Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters,” <i>The Journal of Organic Chemistry</i>, vol. 79, no. 15. American Chemical Society, pp. 7199–7204, 2014.","ista":"Guan W, Michael AK, McIntosh ML, Koren-Selfridge L, Scott JP, Clark TB. 2014. Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters. The Journal of Organic Chemistry. 79(15), 7199–7204."},"language":[{"iso":"eng"}],"scopus_import":"1","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"06","page":"7199-7204","publication_identifier":{"eissn":["1520-6904"],"issn":["0022-3263"]}},{"publication":"ChemPhysChem","page":"756 - 762","title":"Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang","month":"03","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":15,"publist_id":"6332","publisher":"Wiley-Blackwell","day":"17","extern":"1","_id":"1058","language":[{"iso":"eng"}],"citation":{"ieee":"N. Jensen <i>et al.</i>, “Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang,” <i>ChemPhysChem</i>, vol. 15, no. 4. Wiley-Blackwell, pp. 756–762, 2014.","short":"N. Jensen, J.G. Danzl, K. Willig, F. Lavoie Cardinal, T. Brakemann, S. Hell, S. Jakobs, ChemPhysChem 15 (2014) 756–762.","ista":"Jensen N, Danzl JG, Willig K, Lavoie Cardinal F, Brakemann T, Hell S, Jakobs S. 2014. Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang. ChemPhysChem. 15(4), 756–762.","mla":"Jensen, Nickels, et al. “Coordinate-Targeted and Coordinate-Stochastic Super-Resolution Microscopy with the Reversibly Switchable Fluorescent Protein Dreiklang.” <i>ChemPhysChem</i>, vol. 15, no. 4, Wiley-Blackwell, 2014, pp. 756–62, doi:<a href=\"https://doi.org/10.1002/cphc.201301034\">10.1002/cphc.201301034</a>.","apa":"Jensen, N., Danzl, J. G., Willig, K., Lavoie Cardinal, F., Brakemann, T., Hell, S., &#38; Jakobs, S. (2014). Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang. <i>ChemPhysChem</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/cphc.201301034\">https://doi.org/10.1002/cphc.201301034</a>","chicago":"Jensen, Nickels, Johann G Danzl, Katrin Willig, Flavie Lavoie Cardinal, Tanja Brakemann, Stefan Hell, and Stefan Jakobs. “Coordinate-Targeted and Coordinate-Stochastic Super-Resolution Microscopy with the Reversibly Switchable Fluorescent Protein Dreiklang.” <i>ChemPhysChem</i>. Wiley-Blackwell, 2014. <a href=\"https://doi.org/10.1002/cphc.201301034\">https://doi.org/10.1002/cphc.201301034</a>.","ama":"Jensen N, Danzl JG, Willig K, et al. Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang. <i>ChemPhysChem</i>. 2014;15(4):756-762. doi:<a href=\"https://doi.org/10.1002/cphc.201301034\">10.1002/cphc.201301034</a>"},"year":"2014","issue":"4","date_published":"2014-03-17T00:00:00Z","date_updated":"2021-01-12T06:47:58Z","article_processing_charge":"No","author":[{"first_name":"Nickels","full_name":"Jensen, Nickels","last_name":"Jensen"},{"last_name":"Danzl","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","first_name":"Johann G"},{"first_name":"Katrin","full_name":"Willig, Katrin","last_name":"Willig"},{"last_name":"Lavoie Cardinal","full_name":"Lavoie Cardinal, Flavie","first_name":"Flavie"},{"first_name":"Tanja","last_name":"Brakemann","full_name":"Brakemann, Tanja"},{"first_name":"Stefan","last_name":"Hell","full_name":"Hell, Stefan"},{"first_name":"Stefan","full_name":"Jakobs, Stefan","last_name":"Jakobs"}],"type":"journal_article","oa_version":"None","abstract":[{"text":"Diffraction-unlimited far-field super-resolution fluorescence (nanoscopy) methods typically rely on transiently transferring fluorophores between two states, whereby this transfer is usually laid out as a switch. However, depending on whether this is induced in a spatially controlled manner using a pattern of light (coordinate-targeted) or stochastically on a single-molecule basis, specific requirements on the fluorophores are imposed. Therefore, the fluorophores are usually utilized just for one class of methods only. In this study we demonstrate that the reversibly switchable fluorescent protein Dreiklang enables live-cell recordings in both spatially controlled and stochastic modes. We show that the Dreiklang chromophore entails three different light-induced switching mechanisms, namely a reversible photochemical one, off-switching by stimulated emission, and a reversible transfer to a long-lived dark state from the S1 state, all of which can be utilized to overcome the diffraction barrier. We also find that for the single-molecule- based stochastic GSDIM approach (ground-state depletion followed by individual molecule return), Dreiklang provides a larger number of on-off localization events as compared to its progenitor Citrine. Altogether, Dreiklang is a versatile probe for essentially all popular forms of live-cell fluorescence nanoscopy.","lang":"eng"}],"date_created":"2018-12-11T11:49:55Z","publication_status":"published","intvolume":"        15","doi":"10.1002/cphc.201301034","status":"public"},{"status":"public","oa_version":"Preprint","type":"conference","doi":"10.1007/978-3-662-45803-7_36","publication_status":"published","article_processing_charge":"No","author":[{"last_name":"Fulek","full_name":"Fulek, Radoslav","orcid":"0000-0001-8485-1774","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","first_name":"Radoslav"},{"last_name":"Kynčl","full_name":"Kynčl, Jan","first_name":"Jan"},{"full_name":"Malinović, Igor","last_name":"Malinović","first_name":"Igor"},{"full_name":"Pálvölgyi, Dömötör","last_name":"Pálvölgyi","first_name":"Dömötör"}],"department":[{"_id":"UlWa"}],"date_updated":"2025-06-26T07:57:46Z","language":[{"iso":"eng"}],"citation":{"ama":"Fulek R, Kynčl J, Malinović I, Pálvölgyi D. Clustered planarity testing revisited. In: <i>International Symposium on Graph Drawing</i>. Vol 8871. Cham: Springer Nature; 2014:428-436. doi:<a href=\"https://doi.org/10.1007/978-3-662-45803-7_36\">10.1007/978-3-662-45803-7_36</a>","chicago":"Fulek, Radoslav, Jan Kynčl, Igor Malinović, and Dömötör Pálvölgyi. “Clustered Planarity Testing Revisited.” In <i>International Symposium on Graph Drawing</i>, 8871:428–36. Cham: Springer Nature, 2014. <a href=\"https://doi.org/10.1007/978-3-662-45803-7_36\">https://doi.org/10.1007/978-3-662-45803-7_36</a>.","apa":"Fulek, R., Kynčl, J., Malinović, I., &#38; Pálvölgyi, D. (2014). Clustered planarity testing revisited. In <i>International Symposium on Graph Drawing</i> (Vol. 8871, pp. 428–436). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-662-45803-7_36\">https://doi.org/10.1007/978-3-662-45803-7_36</a>","mla":"Fulek, Radoslav, et al. “Clustered Planarity Testing Revisited.” <i>International Symposium on Graph Drawing</i>, vol. 8871, Springer Nature, 2014, pp. 428–36, doi:<a href=\"https://doi.org/10.1007/978-3-662-45803-7_36\">10.1007/978-3-662-45803-7_36</a>.","ista":"Fulek R, Kynčl J, Malinović I, Pálvölgyi D. 2014. Clustered planarity testing revisited. International Symposium on Graph Drawing. , LNCS, vol. 8871, 428–436.","ieee":"R. Fulek, J. Kynčl, I. Malinović, and D. Pálvölgyi, “Clustered planarity testing revisited,” in <i>International Symposium on Graph Drawing</i>, 2014, vol. 8871, pp. 428–436.","short":"R. Fulek, J. Kynčl, I. Malinović, D. Pálvölgyi, in:, International Symposium on Graph Drawing, Springer Nature, Cham, 2014, pp. 428–436."},"scopus_import":"1","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","place":"Cham","publication_identifier":{"issn":["0302-9743"]},"OA_type":"green","external_id":{"arxiv":["1305.4519"]},"related_material":{"record":[{"relation":"later_version","status":"public","id":"1642"}]},"page":"428-436","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1305.4519","open_access":"1"}],"abstract":[{"text":"The Hanani–Tutte theorem is a classical result proved for the first time in the 1930s that characterizes planar graphs as graphs that admit a drawing in the plane in which every pair of edges not sharing a vertex cross an even number of times. We generalize this classical result to clustered graphs with two disjoint clusters, and show that a straightforward extension of our result to flat clustered graphs with three or more disjoint clusters is not possible.\r\n\r\nWe also give a new and short proof for a related result by Di Battista and Frati based on the matroid intersection algorithm.","lang":"eng"}],"intvolume":"      8871","date_created":"2022-02-25T10:32:14Z","oa":1,"alternative_title":["LNCS"],"year":"2014","date_published":"2014-01-01T00:00:00Z","day":"01","publisher":"Springer Nature","arxiv":1,"_id":"10793","title":"Clustered planarity testing revisited","OA_place":"repository","volume":8871,"publication":"International Symposium on Graph Drawing"},{"_id":"10811","scopus_import":"1","publisher":"Springer Nature","day":"01","citation":{"ama":"Zažímalová E, Petrášek J, Benková E, eds. <i>Auxin and Its Role in Plant Development</i>. 1st ed. Vienna: Springer Nature; 2014. doi:<a href=\"https://doi.org/10.1007/978-3-7091-1526-8\">10.1007/978-3-7091-1526-8</a>","chicago":"Zažímalová, Eva, Jan Petrášek, and Eva Benková, eds. <i>Auxin and Its Role in Plant Development</i>. 1st ed. Vienna: Springer Nature, 2014. <a href=\"https://doi.org/10.1007/978-3-7091-1526-8\">https://doi.org/10.1007/978-3-7091-1526-8</a>.","apa":"Zažímalová, E., Petrášek, J., &#38; Benková, E. (Eds.). (2014). <i>Auxin and Its Role in Plant Development</i> (1st ed.). Vienna: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-7091-1526-8\">https://doi.org/10.1007/978-3-7091-1526-8</a>","mla":"Zažímalová, Eva, et al., editors. <i>Auxin and Its Role in Plant Development</i>. 1st ed., Springer Nature, 2014, doi:<a href=\"https://doi.org/10.1007/978-3-7091-1526-8\">10.1007/978-3-7091-1526-8</a>.","ieee":"E. Zažímalová, J. Petrášek, and E. Benková, Eds., <i>Auxin and Its Role in Plant Development</i>, 1st ed. Vienna: Springer Nature, 2014.","ista":"Zažímalová E, Petrášek J, Benková E eds. 2014. Auxin and Its Role in Plant Development 1st ed., Vienna: Springer Nature, 444p.","short":"E. Zažímalová, J. Petrášek, E. Benková, eds., Auxin and Its Role in Plant Development, 1st ed., Springer Nature, Vienna, 2014."},"editor":[{"first_name":"Eva","full_name":"Zažímalová, Eva","last_name":"Zažímalová"},{"first_name":"Jan","full_name":"Petrášek, Jan","last_name":"Petrášek"},{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8510-9739","first_name":"Eva","last_name":"Benková","full_name":"Benková, Eva"}],"language":[{"iso":"eng"}],"page":"444","publication_identifier":{"isbn":["9783709115251"],"eisbn":["9783709115268"]},"place":"Vienna","month":"04","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Auxin and Its Role in Plant Development","abstract":[{"lang":"eng","text":"Auxin is an important signaling compound in plants and vital for plant development and growth. The present book, Auxin and its Role in Plant Development, provides the reader with detailed and comprehensive insight into the functioning of the molecule on the whole and specifically in plant development. In the first part, the functioning, metabolism and signaling pathways of auxin in plants are explained, the second part depicts the specific role of auxin in plant development and the third part describes the interaction and functioning of the signaling compound  upon stimuli of the environment. Each chapter is written by international experts in the respective field and designed for scientists and researchers in plant biology, plant development and cell biology to summarize the recent progress in understanding the role of auxin and suggest future perspectives for auxin research."}],"publication_status":"published","date_created":"2022-03-03T11:52:44Z","doi":"10.1007/978-3-7091-1526-8","type":"book_editor","quality_controlled":"1","oa_version":"None","edition":"1","status":"public","date_published":"2014-04-01T00:00:00Z","date_updated":"2022-03-04T07:38:15Z","year":"2014","department":[{"_id":"EvBe"}],"article_processing_charge":"No"},{"author":[{"full_name":"Seiringer, Robert","last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","department":[{"_id":"RoSe"}],"date_updated":"2024-10-09T21:01:45Z","status":"public","oa_version":"None","type":"journal_article","doi":"10.1365/s13291-014-0083-9","publication_status":"published","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"03","publication_identifier":{"eissn":["1869-7135"],"issn":["0012-0456"]},"page":"21-41","language":[{"iso":"eng"}],"citation":{"ama":"Seiringer R. The excitation spectrum for Bose fluids with weak interactions. <i>Jahresbericht der Deutschen Mathematiker-Vereinigung</i>. 2014;116:21-41. doi:<a href=\"https://doi.org/10.1365/s13291-014-0083-9\">10.1365/s13291-014-0083-9</a>","chicago":"Seiringer, Robert. “The Excitation Spectrum for Bose Fluids with Weak Interactions.” <i>Jahresbericht Der Deutschen Mathematiker-Vereinigung</i>. Springer Nature, 2014. <a href=\"https://doi.org/10.1365/s13291-014-0083-9\">https://doi.org/10.1365/s13291-014-0083-9</a>.","apa":"Seiringer, R. (2014). The excitation spectrum for Bose fluids with weak interactions. <i>Jahresbericht Der Deutschen Mathematiker-Vereinigung</i>. Springer Nature. <a href=\"https://doi.org/10.1365/s13291-014-0083-9\">https://doi.org/10.1365/s13291-014-0083-9</a>","mla":"Seiringer, Robert. “The Excitation Spectrum for Bose Fluids with Weak Interactions.” <i>Jahresbericht Der Deutschen Mathematiker-Vereinigung</i>, vol. 116, Springer Nature, 2014, pp. 21–41, doi:<a href=\"https://doi.org/10.1365/s13291-014-0083-9\">10.1365/s13291-014-0083-9</a>.","short":"R. Seiringer, Jahresbericht Der Deutschen Mathematiker-Vereinigung 116 (2014) 21–41.","ieee":"R. Seiringer, “The excitation spectrum for Bose fluids with weak interactions,” <i>Jahresbericht der Deutschen Mathematiker-Vereinigung</i>, vol. 116. Springer Nature, pp. 21–41, 2014.","ista":"Seiringer R. 2014. The excitation spectrum for Bose fluids with weak interactions. Jahresbericht der Deutschen Mathematiker-Vereinigung. 116, 21–41."},"corr_author":"1","scopus_import":"1","year":"2014","date_published":"2014-03-01T00:00:00Z","quality_controlled":"1","date_created":"2022-03-04T07:54:39Z","abstract":[{"text":"We review recent progress towards a rigorous understanding of the excitation spectrum of bosonic quantum many-body systems. In particular, we explain how one can rigorously establish the predictions resulting from the Bogoliubov approximation in the mean field limit. The latter predicts that the spectrum is made up of elementary excitations, whose energy behaves linearly in the momentum for small momentum. This property is crucial for the superfluid behavior of the system. We also discuss a list of open problems in this field.","lang":"eng"}],"intvolume":"       116","title":"The excitation spectrum for Bose fluids with weak interactions","article_type":"original","volume":116,"publication":"Jahresbericht der Deutschen Mathematiker-Vereinigung","keyword":["General Medicine"],"day":"01","publisher":"Springer Nature","_id":"10814"},{"status":"public","isi":1,"type":"journal_article","oa_version":"None","publication_status":"published","doi":"10.1111/cga.12039","article_processing_charge":"No","author":[{"full_name":"Hashimoto, Masakazu","last_name":"Hashimoto","first_name":"Masakazu"},{"last_name":"Morita","full_name":"Morita, Hitoshi","id":"4C6E54C6-F248-11E8-B48F-1D18A9856A87","first_name":"Hitoshi"},{"first_name":"Naoto","full_name":"Ueno, Naoto","last_name":"Ueno"}],"department":[{"_id":"CaHe"}],"date_updated":"2025-09-29T13:21:58Z","language":[{"iso":"eng"}],"citation":{"mla":"Hashimoto, Masakazu, et al. “Molecular and Cellular Mechanisms of Development Underlying Congenital Diseases.” <i>Congenital Anomalies</i>, vol. 54, no. 1, Wiley, 2014, pp. 1–7, doi:<a href=\"https://doi.org/10.1111/cga.12039\">10.1111/cga.12039</a>.","ista":"Hashimoto M, Morita H, Ueno N. 2014. Molecular and cellular mechanisms of development underlying congenital diseases. Congenital Anomalies. 54(1), 1–7.","ieee":"M. Hashimoto, H. Morita, and N. Ueno, “Molecular and cellular mechanisms of development underlying congenital diseases,” <i>Congenital Anomalies</i>, vol. 54, no. 1. Wiley, pp. 1–7, 2014.","short":"M. Hashimoto, H. Morita, N. Ueno, Congenital Anomalies 54 (2014) 1–7.","chicago":"Hashimoto, Masakazu, Hitoshi Morita, and Naoto Ueno. “Molecular and Cellular Mechanisms of Development Underlying Congenital Diseases.” <i>Congenital Anomalies</i>. Wiley, 2014. <a href=\"https://doi.org/10.1111/cga.12039\">https://doi.org/10.1111/cga.12039</a>.","apa":"Hashimoto, M., Morita, H., &#38; Ueno, N. (2014). Molecular and cellular mechanisms of development underlying congenital diseases. <i>Congenital Anomalies</i>. Wiley. <a href=\"https://doi.org/10.1111/cga.12039\">https://doi.org/10.1111/cga.12039</a>","ama":"Hashimoto M, Morita H, Ueno N. Molecular and cellular mechanisms of development underlying congenital diseases. <i>Congenital Anomalies</i>. 2014;54(1):1-7. doi:<a href=\"https://doi.org/10.1111/cga.12039\">10.1111/cga.12039</a>"},"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"02","publication_identifier":{"issn":["0914-3505"]},"page":"1-7","acknowledgement":"The authors thank all the members of the Division of Morphogenesis, National Institute for Basic Biology, for their contributions to the research, their encouragement, and helpful discussions, particularly Dr M. Suzuki for his critical reading of the manuscript. We also thank the Model Animal Research and Spectrography and Bioimaging Facilities, NIBB Core Research Facilities, for technical support. M.H. was supported by a research fellowship from the Japan Society for the Promotion of Science (JSPS). Our work introduced in this review was supported by a Grant-in-Aid for Scientific Research on Innovative Areas from the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), Japan, to N.U.","external_id":{"isi":["000331769200001"],"pmid":["24666178"]},"quality_controlled":"1","intvolume":"        54","abstract":[{"text":"In the last several decades, developmental biology has clarified the molecular mechanisms of embryogenesis and organogenesis. In particular, it has demonstrated that the “tool-kit genes” essential for regulating developmental processes are not only highly conserved among species, but are also used as systems at various times and places in an organism to control distinct developmental events. Therefore, mutations in many of these tool-kit genes may cause congenital diseases involving morphological abnormalities. This link between genes and abnormal morphological phenotypes underscores the importance of understanding how cells behave and contribute to morphogenesis as a result of gene function. Recent improvements in live imaging and in quantitative analyses of cellular dynamics will advance our understanding of the cellular pathogenesis of congenital diseases associated with aberrant morphologies. In these studies, it is critical to select an appropriate model organism for the particular phenomenon of interest.","lang":"eng"}],"date_created":"2022-03-04T08:17:25Z","main_file_link":[{"url":"https://doi.org/10.1111/cga.12039","open_access":"1"}],"oa":1,"year":"2014","issue":"1","date_published":"2014-02-01T00:00:00Z","pmid":1,"publisher":"Wiley","day":"01","_id":"10815","title":"Molecular and cellular mechanisms of development underlying congenital diseases","article_type":"original","volume":54,"keyword":["Developmental Biology","Embryology","General Medicine","Pediatrics","Perinatology","and Child Health"],"publication":"Congenital Anomalies"},{"year":"2014","date_published":"2014-03-19T00:00:00Z","quality_controlled":"1","series_title":"Mathematics and Visualization","date_created":"2022-03-04T08:33:57Z","abstract":[{"text":"The Morse-Smale complex can be either explicitly or implicitly represented. Depending on the type of representation, the simplification of the Morse-Smale complex works differently. In the explicit representation, the Morse-Smale complex is directly simplified by explicitly reconnecting the critical points during the simplification. In the implicit representation, on the other hand, the Morse-Smale complex is given by a combinatorial gradient field. In this setting, the simplification changes the combinatorial flow, which yields an indirect simplification of the Morse-Smale complex. The topological complexity of the Morse-Smale complex is reduced in both representations. However, the simplifications generally yield different results. In this chapter, we emphasize properties of the two representations that cause these differences. We also provide a complexity analysis of the two schemes with respect to running time and memory consumption.","lang":"eng"}],"publication":"Topological Methods in Data Analysis and Visualization III.","ec_funded":1,"title":"Notes on the simplification of the Morse-Smale complex","publisher":"Springer Nature","day":"19","_id":"10817","editor":[{"first_name":"Peer-Timo","full_name":"Bremer, Peer-Timo","last_name":"Bremer"},{"last_name":"Hotz","full_name":"Hotz, Ingrid","first_name":"Ingrid"},{"first_name":"Valerio","full_name":"Pascucci, Valerio","last_name":"Pascucci"},{"full_name":"Peikert, Ronald","last_name":"Peikert","first_name":"Ronald"}],"department":[{"_id":"HeEd"}],"date_updated":"2025-04-15T08:37:54Z","author":[{"first_name":"David","full_name":"Günther, David","last_name":"Günther"},{"id":"4505473A-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","last_name":"Reininghaus","full_name":"Reininghaus, Jan"},{"full_name":"Seidel, Hans-Peter","last_name":"Seidel","first_name":"Hans-Peter"},{"first_name":"Tino","last_name":"Weinkauf","full_name":"Weinkauf, Tino"}],"article_processing_charge":"No","type":"book_chapter","oa_version":"None","publication_status":"published","doi":"10.1007/978-3-319-04099-8_9","status":"public","place":"Cham","publication_identifier":{"issn":["1612-3786"],"eissn":["2197-666X"],"isbn":["9783319040981"],"eisbn":["9783319040998"]},"page":"135-150","acknowledgement":"This research is supported and funded by the Digiteo unTopoVis project, the TOPOSYS project FP7-ICT-318493-STREP, and MPC-VCC.","month":"03","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","project":[{"grant_number":"318493","name":"Topological Complex Systems","call_identifier":"FP7","_id":"255D761E-B435-11E9-9278-68D0E5697425"}],"scopus_import":"1","language":[{"iso":"eng"}],"citation":{"mla":"Günther, David, et al. “Notes on the Simplification of the Morse-Smale Complex.” <i>Topological Methods in Data Analysis and Visualization III.</i>, edited by Peer-Timo Bremer et al., Springer Nature, 2014, pp. 135–50, doi:<a href=\"https://doi.org/10.1007/978-3-319-04099-8_9\">10.1007/978-3-319-04099-8_9</a>.","ieee":"D. Günther, J. Reininghaus, H.-P. Seidel, and T. Weinkauf, “Notes on the simplification of the Morse-Smale complex,” in <i>Topological Methods in Data Analysis and Visualization III.</i>, P.-T. Bremer, I. Hotz, V. Pascucci, and R. Peikert, Eds. Cham: Springer Nature, 2014, pp. 135–150.","short":"D. Günther, J. Reininghaus, H.-P. Seidel, T. Weinkauf, in:, P.-T. Bremer, I. Hotz, V. Pascucci, R. Peikert (Eds.), Topological Methods in Data Analysis and Visualization III., Springer Nature, Cham, 2014, pp. 135–150.","ista":"Günther D, Reininghaus J, Seidel H-P, Weinkauf T. 2014.Notes on the simplification of the Morse-Smale complex. In: Topological Methods in Data Analysis and Visualization III. , 135–150.","chicago":"Günther, David, Jan Reininghaus, Hans-Peter Seidel, and Tino Weinkauf. “Notes on the Simplification of the Morse-Smale Complex.” In <i>Topological Methods in Data Analysis and Visualization III.</i>, edited by Peer-Timo Bremer, Ingrid Hotz, Valerio Pascucci, and Ronald Peikert, 135–50. Mathematics and Visualization. Cham: Springer Nature, 2014. <a href=\"https://doi.org/10.1007/978-3-319-04099-8_9\">https://doi.org/10.1007/978-3-319-04099-8_9</a>.","apa":"Günther, D., Reininghaus, J., Seidel, H.-P., &#38; Weinkauf, T. (2014). Notes on the simplification of the Morse-Smale complex. In P.-T. Bremer, I. Hotz, V. Pascucci, &#38; R. Peikert (Eds.), <i>Topological Methods in Data Analysis and Visualization III.</i> (pp. 135–150). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-319-04099-8_9\">https://doi.org/10.1007/978-3-319-04099-8_9</a>","ama":"Günther D, Reininghaus J, Seidel H-P, Weinkauf T. Notes on the simplification of the Morse-Smale complex. In: Bremer P-T, Hotz I, Pascucci V, Peikert R, eds. <i>Topological Methods in Data Analysis and Visualization III.</i> Mathematics and Visualization. Cham: Springer Nature; 2014:135-150. doi:<a href=\"https://doi.org/10.1007/978-3-319-04099-8_9\">10.1007/978-3-319-04099-8_9</a>"}},{"volume":8318,"title":"Parameterized model checking of token-passing systems","ec_funded":1,"publication":"Verification, Model Checking, and Abstract Interpretation","_id":"10884","day":"30","arxiv":1,"publisher":"Springer Nature","oa":1,"date_published":"2014-01-30T00:00:00Z","alternative_title":["LNCS"],"year":"2014","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.1311.4425","open_access":"1"}],"abstract":[{"lang":"eng","text":"We revisit the parameterized model checking problem for token-passing systems and specifications in indexed CTL  ∗ \\X. Emerson and Namjoshi (1995, 2003) have shown that parameterized model checking of indexed CTL  ∗ \\X in uni-directional token rings can be reduced to checking rings up to some cutoff size. Clarke et al. (2004) have shown a similar result for general topologies and indexed LTL \\X, provided processes cannot choose the directions for sending or receiving the token.\r\nWe unify and substantially extend these results by systematically exploring fragments of indexed CTL  ∗ \\X with respect to general topologies. For each fragment we establish whether a cutoff exists, and for some concrete topologies, such as rings, cliques and stars, we infer small cutoffs. Finally, we show that the problem becomes undecidable, and thus no cutoffs exist, if processes are allowed to choose the directions in which they send or from which they receive the token."}],"intvolume":"      8318","date_created":"2022-03-18T13:01:22Z","quality_controlled":"1","conference":{"start_date":"2014-01-19","location":"San Diego, CA, United States","name":"VMCAI: Verifcation, Model Checking, and Abstract Interpretation","end_date":"2014-01-21"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","external_id":{"arxiv":["1311.4425"]},"page":"262-281","acknowledgement":"This work was supported by the Austrian Science Fund through grant P23499-N23\r\nand through the RiSE network (S11403, S11405, S11406, S11407-N23); ERC Starting Grant (279307: Graph Games); Vienna Science and Technology Fund (WWTF)\r\ngrants PROSEED, ICT12-059, and VRG11-005.","publication_identifier":{"eissn":["1611-3349"],"eisbn":["9783642540134"],"isbn":["9783642540127"],"issn":["0302-9743"]},"citation":{"ieee":"B. Aminof, S. Jacobs, A. Khalimov, and S. Rubin, “Parameterized model checking of token-passing systems,” in <i>Verification, Model Checking, and Abstract Interpretation</i>, San Diego, CA, United States, 2014, vol. 8318, pp. 262–281.","short":"B. Aminof, S. Jacobs, A. Khalimov, S. Rubin, in:, Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2014, pp. 262–281.","ista":"Aminof B, Jacobs S, Khalimov A, Rubin S. 2014. Parameterized model checking of token-passing systems. Verification, Model Checking, and Abstract Interpretation. VMCAI: Verifcation, Model Checking, and Abstract Interpretation, LNCS, vol. 8318, 262–281.","mla":"Aminof, Benjamin, et al. “Parameterized Model Checking of Token-Passing Systems.” <i>Verification, Model Checking, and Abstract Interpretation</i>, vol. 8318, Springer Nature, 2014, pp. 262–81, doi:<a href=\"https://doi.org/10.1007/978-3-642-54013-4_15\">10.1007/978-3-642-54013-4_15</a>.","ama":"Aminof B, Jacobs S, Khalimov A, Rubin S. Parameterized model checking of token-passing systems. In: <i>Verification, Model Checking, and Abstract Interpretation</i>. Vol 8318. Springer Nature; 2014:262-281. doi:<a href=\"https://doi.org/10.1007/978-3-642-54013-4_15\">10.1007/978-3-642-54013-4_15</a>","apa":"Aminof, B., Jacobs, S., Khalimov, A., &#38; Rubin, S. (2014). Parameterized model checking of token-passing systems. In <i>Verification, Model Checking, and Abstract Interpretation</i> (Vol. 8318, pp. 262–281). San Diego, CA, United States: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-54013-4_15\">https://doi.org/10.1007/978-3-642-54013-4_15</a>","chicago":"Aminof, Benjamin, Swen Jacobs, Ayrat Khalimov, and Sasha Rubin. “Parameterized Model Checking of Token-Passing Systems.” In <i>Verification, Model Checking, and Abstract Interpretation</i>, 8318:262–81. Springer Nature, 2014. <a href=\"https://doi.org/10.1007/978-3-642-54013-4_15\">https://doi.org/10.1007/978-3-642-54013-4_15</a>."},"language":[{"iso":"eng"}],"scopus_import":"1","project":[{"grant_number":"P 23499-N23","call_identifier":"FWF","_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification"},{"name":"Game Theory","call_identifier":"FWF","_id":"25863FF4-B435-11E9-9278-68D0E5697425","grant_number":"S11407"},{"grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425"}],"author":[{"last_name":"Aminof","full_name":"Aminof, Benjamin","first_name":"Benjamin","id":"4A55BD00-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Swen","full_name":"Jacobs, Swen","last_name":"Jacobs"},{"full_name":"Khalimov, Ayrat","last_name":"Khalimov","first_name":"Ayrat"},{"first_name":"Sasha","id":"2EC51194-F248-11E8-B48F-1D18A9856A87","full_name":"Rubin, Sasha","last_name":"Rubin"}],"article_processing_charge":"No","date_updated":"2025-04-15T06:29:59Z","department":[{"_id":"KrCh"}],"status":"public","doi":"10.1007/978-3-642-54013-4_15","publication_status":"published","oa_version":"Preprint","type":"conference"},{"publication_identifier":{"issn":["1612-3786"],"eisbn":["9783319040998"],"isbn":["9783319040981"],"eissn":["2197-666X"]},"acknowledgement":"This research is partially supported by the TOPOSYS project FP7-ICT-318493-STREP.","publication":"Topological Methods in Data Analysis and Visualization III ","page":"249-262","title":"Visualization of two-dimensional symmetric positive definite tensor fields using the heat kernel signature","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"03","day":"19","publisher":"Springer","scopus_import":"1","_id":"10886","language":[{"iso":"eng"}],"citation":{"ama":"Zobel V, Reininghaus J, Hotz I. Visualization of two-dimensional symmetric positive definite tensor fields using the heat kernel signature. In: <i>Topological Methods in Data Analysis and Visualization III </i>. Springer; 2014:249-262. doi:<a href=\"https://doi.org/10.1007/978-3-319-04099-8_16\">10.1007/978-3-319-04099-8_16</a>","chicago":"Zobel, Valentin, Jan Reininghaus, and Ingrid Hotz. “Visualization of Two-Dimensional Symmetric Positive Definite Tensor Fields Using the Heat Kernel Signature.” In <i>Topological Methods in Data Analysis and Visualization III </i>, 249–62. Springer, 2014. <a href=\"https://doi.org/10.1007/978-3-319-04099-8_16\">https://doi.org/10.1007/978-3-319-04099-8_16</a>.","apa":"Zobel, V., Reininghaus, J., &#38; Hotz, I. (2014). Visualization of two-dimensional symmetric positive definite tensor fields using the heat kernel signature. In <i>Topological Methods in Data Analysis and Visualization III </i> (pp. 249–262). Springer. <a href=\"https://doi.org/10.1007/978-3-319-04099-8_16\">https://doi.org/10.1007/978-3-319-04099-8_16</a>","mla":"Zobel, Valentin, et al. “Visualization of Two-Dimensional Symmetric Positive Definite Tensor Fields Using the Heat Kernel Signature.” <i>Topological Methods in Data Analysis and Visualization III </i>, Springer, 2014, pp. 249–62, doi:<a href=\"https://doi.org/10.1007/978-3-319-04099-8_16\">10.1007/978-3-319-04099-8_16</a>.","ista":"Zobel V, Reininghaus J, Hotz I. 2014. Visualization of two-dimensional symmetric positive definite tensor fields using the heat kernel signature. Topological Methods in Data Analysis and Visualization III . , Mathematics and Visualization, , 249–262.","short":"V. Zobel, J. Reininghaus, I. Hotz, in:, Topological Methods in Data Analysis and Visualization III , Springer, 2014, pp. 249–262.","ieee":"V. Zobel, J. Reininghaus, and I. Hotz, “Visualization of two-dimensional symmetric positive definite tensor fields using the heat kernel signature,” in <i>Topological Methods in Data Analysis and Visualization III </i>, 2014, pp. 249–262."},"department":[{"_id":"HeEd"}],"alternative_title":["Mathematics and Visualization"],"year":"2014","date_updated":"2023-09-05T14:13:16Z","date_published":"2014-03-19T00:00:00Z","article_processing_charge":"No","author":[{"first_name":"Valentin","last_name":"Zobel","full_name":"Zobel, Valentin"},{"full_name":"Reininghaus, Jan","last_name":"Reininghaus","id":"4505473A-F248-11E8-B48F-1D18A9856A87","first_name":"Jan"},{"first_name":"Ingrid","last_name":"Hotz","full_name":"Hotz, Ingrid"}],"oa_version":"None","type":"conference","quality_controlled":"1","doi":"10.1007/978-3-319-04099-8_16","abstract":[{"text":"We propose a method for visualizing two-dimensional symmetric positive definite tensor fields using the Heat Kernel Signature (HKS). The HKS is derived from the heat kernel and was originally introduced as an isometry invariant shape signature. Each positive definite tensor field defines a Riemannian manifold by considering the tensor field as a Riemannian metric. On this Riemmanian manifold we can apply the definition of the HKS. The resulting scalar quantity is used for the visualization of tensor fields. The HKS is closely related to the Gaussian curvature of the Riemannian manifold and the time parameter of the heat kernel allows a multiscale analysis in a natural way. In this way, the HKS represents field related scale space properties, enabling a level of detail analysis of tensor fields. This makes the HKS an interesting new scalar quantity for tensor fields, which differs significantly from usual tensor invariants like the trace or the determinant. A method for visualization and a numerical realization of the HKS for tensor fields is proposed in this chapter. To validate the approach we apply it to some illustrating simple examples as isolated critical points and to a medical diffusion tensor data set.","lang":"eng"}],"publication_status":"published","date_created":"2022-03-18T13:05:39Z","status":"public"}]