---
_id: '10383'
abstract:
- lang: eng
  text: We use numerical simulations to compute the equation of state of a suspension
    of spherical self-propelled nanoparticles in two and three dimensions. We study
    in detail the effect of excluded volume interactions and confinement as a function
    of the system's temperature, concentration, and strength of the propulsion. We
    find a striking nonmonotonic dependence of the pressure on the temperature and
    provide simple scaling arguments to predict and explain the occurrence of such
    anomalous behavior. We explicitly show how our results have important implications
    for the effective forces on passive components suspended in a bath of active particles.
article_number: '052303'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: S. A.
  full_name: Mallory, S. A.
  last_name: Mallory
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: C.
  full_name: Valeriani, C.
  last_name: Valeriani
- first_name: A.
  full_name: Cacciuto, A.
  last_name: Cacciuto
citation:
  ama: Mallory SA, Šarić A, Valeriani C, Cacciuto A. Anomalous thermomechanical properties
    of a self-propelled colloidal fluid. <i>Physical Review E</i>. 2014;89(5). doi:<a
    href="https://doi.org/10.1103/physreve.89.052303">10.1103/physreve.89.052303</a>
  apa: Mallory, S. A., Šarić, A., Valeriani, C., &#38; Cacciuto, A. (2014). Anomalous
    thermomechanical properties of a self-propelled colloidal fluid. <i>Physical Review
    E</i>. American Physical Society. <a href="https://doi.org/10.1103/physreve.89.052303">https://doi.org/10.1103/physreve.89.052303</a>
  chicago: Mallory, S. A., Anđela Šarić, C. Valeriani, and A. Cacciuto. “Anomalous
    Thermomechanical Properties of a Self-Propelled Colloidal Fluid.” <i>Physical
    Review E</i>. American Physical Society, 2014. <a href="https://doi.org/10.1103/physreve.89.052303">https://doi.org/10.1103/physreve.89.052303</a>.
  ieee: S. A. Mallory, A. Šarić, C. Valeriani, and A. Cacciuto, “Anomalous thermomechanical
    properties of a self-propelled colloidal fluid,” <i>Physical Review E</i>, vol.
    89, no. 5. American Physical Society, 2014.
  ista: Mallory SA, Šarić A, Valeriani C, Cacciuto A. 2014. Anomalous thermomechanical
    properties of a self-propelled colloidal fluid. Physical Review E. 89(5), 052303.
  mla: Mallory, S. A., et al. “Anomalous Thermomechanical Properties of a Self-Propelled
    Colloidal Fluid.” <i>Physical Review E</i>, vol. 89, no. 5, 052303, American Physical
    Society, 2014, doi:<a href="https://doi.org/10.1103/physreve.89.052303">10.1103/physreve.89.052303</a>.
  short: S.A. Mallory, A. Šarić, C. Valeriani, A. Cacciuto, Physical Review E 89 (2014).
date_created: 2021-11-29T13:10:33Z
date_published: 2014-05-06T00:00:00Z
date_updated: 2021-11-29T13:29:01Z
day: '06'
doi: 10.1103/physreve.89.052303
extern: '1'
external_id:
  arxiv:
  - '1310.0826'
  pmid:
  - '25353796'
fulldoi: https://doi.org/10.1103/physreve.89.052303
intvolume: '        89'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1310.0826
month: '05'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review E
publication_identifier:
  eissn:
  - 1550-2376
  issn:
  - 1539-3755
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anomalous thermomechanical properties of a self-propelled colloidal fluid
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 89
year: '2014'
...
---
OA_place: repository
OA_type: green
_id: '10793'
abstract:
- lang: eng
  text: "The Hanani–Tutte theorem is a classical result proved for the first time
    in the 1930s that characterizes planar graphs as graphs that admit a drawing in
    the plane in which every pair of edges not sharing a vertex cross an even number
    of times. We generalize this classical result to clustered graphs with two disjoint
    clusters, and show that a straightforward extension of our result to flat clustered
    graphs with three or more disjoint clusters is not possible.\r\n\r\nWe also give
    a new and short proof for a related result by Di Battista and Frati based on the
    matroid intersection algorithm."
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: Jan
  full_name: Kynčl, Jan
  last_name: Kynčl
- first_name: Igor
  full_name: Malinović, Igor
  last_name: Malinović
- first_name: Dömötör
  full_name: Pálvölgyi, Dömötör
  last_name: Pálvölgyi
citation:
  ama: 'Fulek R, Kynčl J, Malinović I, Pálvölgyi D. Clustered planarity testing revisited.
    In: <i>International Symposium on Graph Drawing</i>. Vol 8871. Cham: Springer
    Nature; 2014:428-436. doi:<a href="https://doi.org/10.1007/978-3-662-45803-7_36">10.1007/978-3-662-45803-7_36</a>'
  apa: 'Fulek, R., Kynčl, J., Malinović, I., &#38; Pálvölgyi, D. (2014). Clustered
    planarity testing revisited. In <i>International Symposium on Graph Drawing</i>
    (Vol. 8871, pp. 428–436). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-662-45803-7_36">https://doi.org/10.1007/978-3-662-45803-7_36</a>'
  chicago: 'Fulek, Radoslav, Jan Kynčl, Igor Malinović, and Dömötör Pálvölgyi. “Clustered
    Planarity Testing Revisited.” In <i>International Symposium on Graph Drawing</i>,
    8871:428–36. Cham: Springer Nature, 2014. <a href="https://doi.org/10.1007/978-3-662-45803-7_36">https://doi.org/10.1007/978-3-662-45803-7_36</a>.'
  ieee: R. Fulek, J. Kynčl, I. Malinović, and D. Pálvölgyi, “Clustered planarity testing
    revisited,” in <i>International Symposium on Graph Drawing</i>, 2014, vol. 8871,
    pp. 428–436.
  ista: Fulek R, Kynčl J, Malinović I, Pálvölgyi D. 2014. Clustered planarity testing
    revisited. International Symposium on Graph Drawing. , LNCS, vol. 8871, 428–436.
  mla: Fulek, Radoslav, et al. “Clustered Planarity Testing Revisited.” <i>International
    Symposium on Graph Drawing</i>, vol. 8871, Springer Nature, 2014, pp. 428–36,
    doi:<a href="https://doi.org/10.1007/978-3-662-45803-7_36">10.1007/978-3-662-45803-7_36</a>.
  short: R. Fulek, J. Kynčl, I. Malinović, D. Pálvölgyi, in:, International Symposium
    on Graph Drawing, Springer Nature, Cham, 2014, pp. 428–436.
date_created: 2022-02-25T10:32:14Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2025-06-26T07:57:46Z
day: '01'
department:
- _id: UlWa
doi: 10.1007/978-3-662-45803-7_36
external_id:
  arxiv:
  - '1305.4519'
fulldoi: https://doi.org/10.1007/978-3-662-45803-7_36
intvolume: '      8871'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1305.4519
month: '01'
oa: 1
oa_version: Preprint
page: 428-436
place: Cham
publication: International Symposium on Graph Drawing
publication_identifier:
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '1642'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Clustered planarity testing revisited
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8871
year: '2014'
...
---
_id: '10811'
abstract:
- lang: eng
  text: Auxin is an important signaling compound in plants and vital for plant development
    and growth. The present book, Auxin and its Role in Plant Development, provides
    the reader with detailed and comprehensive insight into the functioning of the
    molecule on the whole and specifically in plant development. In the first part,
    the functioning, metabolism and signaling pathways of auxin in plants are explained,
    the second part depicts the specific role of auxin in plant development and the
    third part describes the interaction and functioning of the signaling compound  upon
    stimuli of the environment. Each chapter is written by international experts in
    the respective field and designed for scientists and researchers in plant biology,
    plant development and cell biology to summarize the recent progress in understanding
    the role of auxin and suggest future perspectives for auxin research.
article_processing_charge: No
citation:
  ama: 'Zažímalová E, Petrášek J, Benková E, eds. <i>Auxin and Its Role in Plant Development</i>.
    1st ed. Vienna: Springer Nature; 2014. doi:<a href="https://doi.org/10.1007/978-3-7091-1526-8">10.1007/978-3-7091-1526-8</a>'
  apa: 'Zažímalová, E., Petrášek, J., &#38; Benková, E. (Eds.). (2014). <i>Auxin and
    Its Role in Plant Development</i> (1st ed.). Vienna: Springer Nature. <a href="https://doi.org/10.1007/978-3-7091-1526-8">https://doi.org/10.1007/978-3-7091-1526-8</a>'
  chicago: 'Zažímalová, Eva, Jan Petrášek, and Eva Benková, eds. <i>Auxin and Its
    Role in Plant Development</i>. 1st ed. Vienna: Springer Nature, 2014. <a href="https://doi.org/10.1007/978-3-7091-1526-8">https://doi.org/10.1007/978-3-7091-1526-8</a>.'
  ieee: 'E. Zažímalová, J. Petrášek, and E. Benková, Eds., <i>Auxin and Its Role in
    Plant Development</i>, 1st ed. Vienna: Springer Nature, 2014.'
  ista: 'Zažímalová E, Petrášek J, Benková E eds. 2014. Auxin and Its Role in Plant
    Development 1st ed., Vienna: Springer Nature, 444p.'
  mla: Zažímalová, Eva, et al., editors. <i>Auxin and Its Role in Plant Development</i>.
    1st ed., Springer Nature, 2014, doi:<a href="https://doi.org/10.1007/978-3-7091-1526-8">10.1007/978-3-7091-1526-8</a>.
  short: E. Zažímalová, J. Petrášek, E. Benková, eds., Auxin and Its Role in Plant
    Development, 1st ed., Springer Nature, Vienna, 2014.
date_created: 2022-03-03T11:52:44Z
date_published: 2014-04-01T00:00:00Z
date_updated: 2022-03-04T07:38:15Z
day: '01'
department:
- _id: EvBe
doi: 10.1007/978-3-7091-1526-8
edition: '1'
editor:
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
fulldoi: https://doi.org/10.1007/978-3-7091-1526-8
language:
- iso: eng
month: '04'
oa_version: None
page: '444'
place: Vienna
publication_identifier:
  eisbn:
  - '9783709115268'
  isbn:
  - '9783709115251'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin and Its Role in Plant Development
type: book_editor
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '10814'
abstract:
- lang: eng
  text: We review recent progress towards a rigorous understanding of the excitation
    spectrum of bosonic quantum many-body systems. In particular, we explain how one
    can rigorously establish the predictions resulting from the Bogoliubov approximation
    in the mean field limit. The latter predicts that the spectrum is made up of elementary
    excitations, whose energy behaves linearly in the momentum for small momentum.
    This property is crucial for the superfluid behavior of the system. We also discuss
    a list of open problems in this field.
article_processing_charge: No
article_type: original
author:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Seiringer R. The excitation spectrum for Bose fluids with weak interactions.
    <i>Jahresbericht der Deutschen Mathematiker-Vereinigung</i>. 2014;116:21-41. doi:<a
    href="https://doi.org/10.1365/s13291-014-0083-9">10.1365/s13291-014-0083-9</a>
  apa: Seiringer, R. (2014). The excitation spectrum for Bose fluids with weak interactions.
    <i>Jahresbericht Der Deutschen Mathematiker-Vereinigung</i>. Springer Nature.
    <a href="https://doi.org/10.1365/s13291-014-0083-9">https://doi.org/10.1365/s13291-014-0083-9</a>
  chicago: Seiringer, Robert. “The Excitation Spectrum for Bose Fluids with Weak Interactions.”
    <i>Jahresbericht Der Deutschen Mathematiker-Vereinigung</i>. Springer Nature,
    2014. <a href="https://doi.org/10.1365/s13291-014-0083-9">https://doi.org/10.1365/s13291-014-0083-9</a>.
  ieee: R. Seiringer, “The excitation spectrum for Bose fluids with weak interactions,”
    <i>Jahresbericht der Deutschen Mathematiker-Vereinigung</i>, vol. 116. Springer
    Nature, pp. 21–41, 2014.
  ista: Seiringer R. 2014. The excitation spectrum for Bose fluids with weak interactions.
    Jahresbericht der Deutschen Mathematiker-Vereinigung. 116, 21–41.
  mla: Seiringer, Robert. “The Excitation Spectrum for Bose Fluids with Weak Interactions.”
    <i>Jahresbericht Der Deutschen Mathematiker-Vereinigung</i>, vol. 116, Springer
    Nature, 2014, pp. 21–41, doi:<a href="https://doi.org/10.1365/s13291-014-0083-9">10.1365/s13291-014-0083-9</a>.
  short: R. Seiringer, Jahresbericht Der Deutschen Mathematiker-Vereinigung 116 (2014)
    21–41.
corr_author: '1'
date_created: 2022-03-04T07:54:39Z
date_published: 2014-03-01T00:00:00Z
date_updated: 2024-10-09T21:01:45Z
day: '01'
department:
- _id: RoSe
doi: 10.1365/s13291-014-0083-9
fulldoi: https://doi.org/10.1365/s13291-014-0083-9
intvolume: '       116'
keyword:
- General Medicine
language:
- iso: eng
month: '03'
oa_version: None
page: 21-41
publication: Jahresbericht der Deutschen Mathematiker-Vereinigung
publication_identifier:
  eissn:
  - 1869-7135
  issn:
  - 0012-0456
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The excitation spectrum for Bose fluids with weak interactions
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 116
year: '2014'
...
---
_id: '10815'
abstract:
- lang: eng
  text: In the last several decades, developmental biology has clarified the molecular
    mechanisms of embryogenesis and organogenesis. In particular, it has demonstrated
    that the “tool-kit genes” essential for regulating developmental processes are
    not only highly conserved among species, but are also used as systems at various
    times and places in an organism to control distinct developmental events. Therefore,
    mutations in many of these tool-kit genes may cause congenital diseases involving
    morphological abnormalities. This link between genes and abnormal morphological
    phenotypes underscores the importance of understanding how cells behave and contribute
    to morphogenesis as a result of gene function. Recent improvements in live imaging
    and in quantitative analyses of cellular dynamics will advance our understanding
    of the cellular pathogenesis of congenital diseases associated with aberrant morphologies.
    In these studies, it is critical to select an appropriate model organism for the
    particular phenomenon of interest.
acknowledgement: The authors thank all the members of the Division of Morphogenesis,
  National Institute for Basic Biology, for their contributions to the research, their
  encouragement, and helpful discussions, particularly Dr M. Suzuki for his critical
  reading of the manuscript. We also thank the Model Animal Research and Spectrography
  and Bioimaging Facilities, NIBB Core Research Facilities, for technical support.
  M.H. was supported by a research fellowship from the Japan Society for the Promotion
  of Science (JSPS). Our work introduced in this review was supported by a Grant-in-Aid
  for Scientific Research on Innovative Areas from the Ministry of Education, Culture,
  Sports, Science, and Technology (MEXT), Japan, to N.U.
article_processing_charge: No
article_type: original
author:
- first_name: Masakazu
  full_name: Hashimoto, Masakazu
  last_name: Hashimoto
- first_name: Hitoshi
  full_name: Morita, Hitoshi
  id: 4C6E54C6-F248-11E8-B48F-1D18A9856A87
  last_name: Morita
- first_name: Naoto
  full_name: Ueno, Naoto
  last_name: Ueno
citation:
  ama: Hashimoto M, Morita H, Ueno N. Molecular and cellular mechanisms of development
    underlying congenital diseases. <i>Congenital Anomalies</i>. 2014;54(1):1-7. doi:<a
    href="https://doi.org/10.1111/cga.12039">10.1111/cga.12039</a>
  apa: Hashimoto, M., Morita, H., &#38; Ueno, N. (2014). Molecular and cellular mechanisms
    of development underlying congenital diseases. <i>Congenital Anomalies</i>. Wiley.
    <a href="https://doi.org/10.1111/cga.12039">https://doi.org/10.1111/cga.12039</a>
  chicago: Hashimoto, Masakazu, Hitoshi Morita, and Naoto Ueno. “Molecular and Cellular
    Mechanisms of Development Underlying Congenital Diseases.” <i>Congenital Anomalies</i>.
    Wiley, 2014. <a href="https://doi.org/10.1111/cga.12039">https://doi.org/10.1111/cga.12039</a>.
  ieee: M. Hashimoto, H. Morita, and N. Ueno, “Molecular and cellular mechanisms of
    development underlying congenital diseases,” <i>Congenital Anomalies</i>, vol.
    54, no. 1. Wiley, pp. 1–7, 2014.
  ista: Hashimoto M, Morita H, Ueno N. 2014. Molecular and cellular mechanisms of
    development underlying congenital diseases. Congenital Anomalies. 54(1), 1–7.
  mla: Hashimoto, Masakazu, et al. “Molecular and Cellular Mechanisms of Development
    Underlying Congenital Diseases.” <i>Congenital Anomalies</i>, vol. 54, no. 1,
    Wiley, 2014, pp. 1–7, doi:<a href="https://doi.org/10.1111/cga.12039">10.1111/cga.12039</a>.
  short: M. Hashimoto, H. Morita, N. Ueno, Congenital Anomalies 54 (2014) 1–7.
date_created: 2022-03-04T08:17:25Z
date_published: 2014-02-01T00:00:00Z
date_updated: 2025-09-29T13:21:58Z
day: '01'
department:
- _id: CaHe
doi: 10.1111/cga.12039
external_id:
  isi:
  - '000331769200001'
  pmid:
  - '24666178'
fulldoi: https://doi.org/10.1111/cga.12039
intvolume: '        54'
isi: 1
issue: '1'
keyword:
- Developmental Biology
- Embryology
- General Medicine
- Pediatrics
- Perinatology
- and Child Health
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1111/cga.12039
month: '02'
oa: 1
oa_version: None
page: 1-7
pmid: 1
publication: Congenital Anomalies
publication_identifier:
  issn:
  - 0914-3505
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Molecular and cellular mechanisms of development underlying congenital diseases
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 54
year: '2014'
...
---
_id: '7598'
article_processing_charge: No
article_type: original
author:
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Hong-Wei
  full_name: Xue, Hong-Wei
  last_name: Xue
citation:
  ama: Tan S, Xue H-W. Casein kinase 1 regulates ethylene synthesis by phosphorylating
    and promoting the turnover of ACS5. <i>Cell Reports</i>. 2014;9(5):1692-1702.
    doi:<a href="https://doi.org/10.1016/j.celrep.2014.10.047">10.1016/j.celrep.2014.10.047</a>
  apa: Tan, S., &#38; Xue, H.-W. (2014). Casein kinase 1 regulates ethylene synthesis
    by phosphorylating and promoting the turnover of ACS5. <i>Cell Reports</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.celrep.2014.10.047">https://doi.org/10.1016/j.celrep.2014.10.047</a>
  chicago: Tan, Shutang, and Hong-Wei Xue. “Casein Kinase 1 Regulates Ethylene Synthesis
    by Phosphorylating and Promoting the Turnover of ACS5.” <i>Cell Reports</i>. Elsevier,
    2014. <a href="https://doi.org/10.1016/j.celrep.2014.10.047">https://doi.org/10.1016/j.celrep.2014.10.047</a>.
  ieee: S. Tan and H.-W. Xue, “Casein kinase 1 regulates ethylene synthesis by phosphorylating
    and promoting the turnover of ACS5,” <i>Cell Reports</i>, vol. 9, no. 5. Elsevier,
    pp. 1692–1702, 2014.
  ista: Tan S, Xue H-W. 2014. Casein kinase 1 regulates ethylene synthesis by phosphorylating
    and promoting the turnover of ACS5. Cell Reports. 9(5), 1692–1702.
  mla: Tan, Shutang, and Hong-Wei Xue. “Casein Kinase 1 Regulates Ethylene Synthesis
    by Phosphorylating and Promoting the Turnover of ACS5.” <i>Cell Reports</i>, vol.
    9, no. 5, Elsevier, 2014, pp. 1692–702, doi:<a href="https://doi.org/10.1016/j.celrep.2014.10.047">10.1016/j.celrep.2014.10.047</a>.
  short: S. Tan, H.-W. Xue, Cell Reports 9 (2014) 1692–1702.
date_created: 2020-03-21T16:08:18Z
date_published: 2014-12-11T00:00:00Z
date_updated: 2021-01-12T08:14:24Z
day: '11'
ddc:
- '580'
doi: 10.1016/j.celrep.2014.10.047
extern: '1'
file:
- access_level: open_access
  checksum: 23c30de4ac98ce9879fc054121517626
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  creator: dernst
  date_created: 2020-03-23T12:23:40Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7613'
  file_name: 2014_CellPress_Tan.pdf
  file_size: 2755808
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
fulldoi: https://doi.org/10.1016/j.celrep.2014.10.047
has_accepted_license: '1'
intvolume: '         9'
issue: '5'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 1692-1702
publication: Cell Reports
publication_identifier:
  issn:
  - 2211-1247
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Casein kinase 1 regulates ethylene synthesis by phosphorylating and promoting
  the turnover of ACS5
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2014'
...
---
_id: '7699'
article_processing_charge: No
article_type: original
author:
- first_name: Lora Beatrice Jaeger
  full_name: Sweeney, Lora Beatrice Jaeger
  id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
  last_name: Sweeney
  orcid: 0000-0001-9242-5601
- first_name: Darcy B
  full_name: Kelley, Darcy B
  last_name: Kelley
citation:
  ama: Sweeney LB, Kelley DB. Harnessing vocal patterns for social communication.
    <i>Current Opinion in Neurobiology</i>. 2014;28(10):34-41. doi:<a href="https://doi.org/10.1016/j.conb.2014.06.006">10.1016/j.conb.2014.06.006</a>
  apa: Sweeney, L. B., &#38; Kelley, D. B. (2014). Harnessing vocal patterns for social
    communication. <i>Current Opinion in Neurobiology</i>. Elsevier. <a href="https://doi.org/10.1016/j.conb.2014.06.006">https://doi.org/10.1016/j.conb.2014.06.006</a>
  chicago: Sweeney, Lora B., and Darcy B Kelley. “Harnessing Vocal Patterns for Social
    Communication.” <i>Current Opinion in Neurobiology</i>. Elsevier, 2014. <a href="https://doi.org/10.1016/j.conb.2014.06.006">https://doi.org/10.1016/j.conb.2014.06.006</a>.
  ieee: L. B. Sweeney and D. B. Kelley, “Harnessing vocal patterns for social communication,”
    <i>Current Opinion in Neurobiology</i>, vol. 28, no. 10. Elsevier, pp. 34–41,
    2014.
  ista: Sweeney LB, Kelley DB. 2014. Harnessing vocal patterns for social communication.
    Current Opinion in Neurobiology. 28(10), 34–41.
  mla: Sweeney, Lora B., and Darcy B. Kelley. “Harnessing Vocal Patterns for Social
    Communication.” <i>Current Opinion in Neurobiology</i>, vol. 28, no. 10, Elsevier,
    2014, pp. 34–41, doi:<a href="https://doi.org/10.1016/j.conb.2014.06.006">10.1016/j.conb.2014.06.006</a>.
  short: L.B. Sweeney, D.B. Kelley, Current Opinion in Neurobiology 28 (2014) 34–41.
date_created: 2020-04-30T10:35:39Z
date_published: 2014-10-01T00:00:00Z
date_updated: 2024-01-31T10:14:08Z
day: '01'
doi: 10.1016/j.conb.2014.06.006
extern: '1'
fulldoi: https://doi.org/10.1016/j.conb.2014.06.006
intvolume: '        28'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
page: 34-41
publication: Current Opinion in Neurobiology
publication_identifier:
  issn:
  - 0959-4388
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Harnessing vocal patterns for social communication
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2014'
...
---
_id: '7743'
abstract:
- lang: eng
  text: Experimental studies have demonstrated that environmental variation can create
    genotype‐environment interactions (GEIs) in the traits involved in sexual selection.
    Understanding the genetic architecture of phenotype across environments will require
    statistical tests that can describe both changes in genetic variance and covariance
    across environments. This chapter outlines the theoretical framework for the processes
    of sexual selection in the wild, identifying key parameters in wild systems, and
    highlighting the potential effects of the environment. It describes the proposed
    approaches for the estimation of these key parameters in a quantitative genetic
    framework within naturally occurring pedigreed populations. The chapter provides
    a worked example for a range of analysis methods. It aims to provide an overview
    of the analytical methods that can be used to model GEIs for traits involved in
    sexual selection in naturally occurring pedigreed populations.
article_processing_charge: No
author:
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: Anna
  full_name: Qvarnström, Anna
  last_name: Qvarnström
citation:
  ama: 'Robinson MR, Qvarnström A. Influence of the environment on the genetic architecture
    of traits involved in sexual selection within wild populations. In: Hunt J, Hosken
    D, eds. <i>Genotype-by-Environment Interactions and Sexual Selection</i>. Chichester,
    UK: Wiley; 2014:137-168. doi:<a href="https://doi.org/10.1002/9781118912591.ch6">10.1002/9781118912591.ch6</a>'
  apa: 'Robinson, M. R., &#38; Qvarnström, A. (2014). Influence of the environment
    on the genetic architecture of traits involved in sexual selection within wild
    populations. In J. Hunt &#38; D. Hosken (Eds.), <i>Genotype-by-Environment Interactions
    and Sexual Selection</i> (pp. 137–168). Chichester, UK: Wiley. <a href="https://doi.org/10.1002/9781118912591.ch6">https://doi.org/10.1002/9781118912591.ch6</a>'
  chicago: 'Robinson, Matthew Richard, and Anna Qvarnström. “Influence of the Environment
    on the Genetic Architecture of Traits Involved in Sexual Selection within Wild
    Populations.” In <i>Genotype-by-Environment Interactions and Sexual Selection</i>,
    edited by John Hunt and David Hosken, 137–68. Chichester, UK: Wiley, 2014. <a
    href="https://doi.org/10.1002/9781118912591.ch6">https://doi.org/10.1002/9781118912591.ch6</a>.'
  ieee: 'M. R. Robinson and A. Qvarnström, “Influence of the environment on the genetic
    architecture of traits involved in sexual selection within wild populations,”
    in <i>Genotype-by-Environment Interactions and Sexual Selection</i>, J. Hunt and
    D. Hosken, Eds. Chichester, UK: Wiley, 2014, pp. 137–168.'
  ista: 'Robinson MR, Qvarnström A. 2014.Influence of the environment on the genetic
    architecture of traits involved in sexual selection within wild populations. In:
    Genotype-by-Environment Interactions and Sexual Selection. , 137–168.'
  mla: Robinson, Matthew Richard, and Anna Qvarnström. “Influence of the Environment
    on the Genetic Architecture of Traits Involved in Sexual Selection within Wild
    Populations.” <i>Genotype-by-Environment Interactions and Sexual Selection</i>,
    edited by John Hunt and David Hosken, Wiley, 2014, pp. 137–68, doi:<a href="https://doi.org/10.1002/9781118912591.ch6">10.1002/9781118912591.ch6</a>.
  short: M.R. Robinson, A. Qvarnström, in:, J. Hunt, D. Hosken (Eds.), Genotype-by-Environment
    Interactions and Sexual Selection, Wiley, Chichester, UK, 2014, pp. 137–168.
date_created: 2020-04-30T10:58:39Z
date_published: 2014-08-29T00:00:00Z
date_updated: 2021-01-12T08:15:13Z
day: '29'
doi: 10.1002/9781118912591.ch6
editor:
- first_name: John
  full_name: Hunt, John
  last_name: Hunt
- first_name: David
  full_name: Hosken, David
  last_name: Hosken
extern: '1'
fulldoi: https://doi.org/10.1002/9781118912591.ch6
language:
- iso: eng
month: '08'
oa_version: None
page: 137-168
place: Chichester, UK
publication: Genotype-by-Environment Interactions and Sexual Selection
publication_identifier:
  eisbn:
  - '9781118912591'
  isbn:
  - '9780470671795'
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Influence of the environment on the genetic architecture of traits involved
  in sexual selection within wild populations
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '7744'
article_processing_charge: No
article_type: original
author:
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: Naomi R.
  full_name: Wray, Naomi R.
  last_name: Wray
- first_name: Peter M.
  full_name: Visscher, Peter M.
  last_name: Visscher
citation:
  ama: Robinson MR, Wray NR, Visscher PM. Explaining additional genetic variation
    in complex traits. <i>Trends in Genetics</i>. 2014;30(4):124-132. doi:<a href="https://doi.org/10.1016/j.tig.2014.02.003">10.1016/j.tig.2014.02.003</a>
  apa: Robinson, M. R., Wray, N. R., &#38; Visscher, P. M. (2014). Explaining additional
    genetic variation in complex traits. <i>Trends in Genetics</i>. Elsevier. <a href="https://doi.org/10.1016/j.tig.2014.02.003">https://doi.org/10.1016/j.tig.2014.02.003</a>
  chicago: Robinson, Matthew Richard, Naomi R. Wray, and Peter M. Visscher. “Explaining
    Additional Genetic Variation in Complex Traits.” <i>Trends in Genetics</i>. Elsevier,
    2014. <a href="https://doi.org/10.1016/j.tig.2014.02.003">https://doi.org/10.1016/j.tig.2014.02.003</a>.
  ieee: M. R. Robinson, N. R. Wray, and P. M. Visscher, “Explaining additional genetic
    variation in complex traits,” <i>Trends in Genetics</i>, vol. 30, no. 4. Elsevier,
    pp. 124–132, 2014.
  ista: Robinson MR, Wray NR, Visscher PM. 2014. Explaining additional genetic variation
    in complex traits. Trends in Genetics. 30(4), 124–132.
  mla: Robinson, Matthew Richard, et al. “Explaining Additional Genetic Variation
    in Complex Traits.” <i>Trends in Genetics</i>, vol. 30, no. 4, Elsevier, 2014,
    pp. 124–32, doi:<a href="https://doi.org/10.1016/j.tig.2014.02.003">10.1016/j.tig.2014.02.003</a>.
  short: M.R. Robinson, N.R. Wray, P.M. Visscher, Trends in Genetics 30 (2014) 124–132.
date_created: 2020-04-30T10:58:58Z
date_published: 2014-04-01T00:00:00Z
date_updated: 2021-01-12T08:15:14Z
day: '01'
doi: 10.1016/j.tig.2014.02.003
extern: '1'
fulldoi: https://doi.org/10.1016/j.tig.2014.02.003
intvolume: '        30'
issue: '4'
language:
- iso: eng
month: '04'
oa_version: None
page: 124-132
publication: Trends in Genetics
publication_identifier:
  issn:
  - 0168-9525
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Explaining additional genetic variation in complex traits
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2014'
...
---
_id: '7768'
abstract:
- lang: eng
  text: We investigate the vibrational modes of quasi-two-dimensional disordered colloidal
    packings of hard colloidal spheres with short-range attractions as a function
    of packing fraction. Certain properties of the vibrational density of states (vDOS)
    are shown to correlate with the density and structure of the samples (i.e., in
    sparsely versus densely packed samples). Specifically, a crossover from dense
    glassy to sparse gel-like states is suggested by an excess of phonon modes at
    low frequency and by a variation in the slope of the vDOS with frequency at low
    frequency. This change in phonon mode distribution is demonstrated to arise largely
    from localized vibrations that involve individual and/or small clusters of particles
    with few local bonds. Conventional order parameters and void statistics did not
    exhibit obvious gel-glass signatures as a function of volume fraction. These mode
    behaviors and accompanying structural insights offer a potentially new set of
    indicators for identification of glass-gel transitions and for assignment of gel-like
    versus glass-like character to a disordered solid material.
article_number: '062305'
article_processing_charge: No
article_type: original
author:
- first_name: Matthew A.
  full_name: Lohr, Matthew A.
  last_name: Lohr
- first_name: Tim
  full_name: Still, Tim
  last_name: Still
- first_name: Raman
  full_name: Ganti, Raman
  last_name: Ganti
- first_name: Matthew D.
  full_name: Gratale, Matthew D.
  last_name: Gratale
- first_name: Zoey S.
  full_name: Davidson, Zoey S.
  last_name: Davidson
- first_name: Kevin B.
  full_name: Aptowicz, Kevin B.
  last_name: Aptowicz
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Daniel M.
  full_name: Sussman, Daniel M.
  last_name: Sussman
- first_name: A. G.
  full_name: Yodh, A. G.
  last_name: Yodh
citation:
  ama: Lohr MA, Still T, Ganti R, et al. Vibrational and structural signatures of
    the crossover between dense glassy and sparse gel-like attractive colloidal packings.
    <i>Physical Review E</i>. 2014;90(6). doi:<a href="https://doi.org/10.1103/physreve.90.062305">10.1103/physreve.90.062305</a>
  apa: Lohr, M. A., Still, T., Ganti, R., Gratale, M. D., Davidson, Z. S., Aptowicz,
    K. B., … Yodh, A. G. (2014). Vibrational and structural signatures of the crossover
    between dense glassy and sparse gel-like attractive colloidal packings. <i>Physical
    Review E</i>. American Physical Society. <a href="https://doi.org/10.1103/physreve.90.062305">https://doi.org/10.1103/physreve.90.062305</a>
  chicago: Lohr, Matthew A., Tim Still, Raman Ganti, Matthew D. Gratale, Zoey S. Davidson,
    Kevin B. Aptowicz, Carl Peter Goodrich, Daniel M. Sussman, and A. G. Yodh. “Vibrational
    and Structural Signatures of the Crossover between Dense Glassy and Sparse Gel-like
    Attractive Colloidal Packings.” <i>Physical Review E</i>. American Physical Society,
    2014. <a href="https://doi.org/10.1103/physreve.90.062305">https://doi.org/10.1103/physreve.90.062305</a>.
  ieee: M. A. Lohr <i>et al.</i>, “Vibrational and structural signatures of the crossover
    between dense glassy and sparse gel-like attractive colloidal packings,” <i>Physical
    Review E</i>, vol. 90, no. 6. American Physical Society, 2014.
  ista: Lohr MA, Still T, Ganti R, Gratale MD, Davidson ZS, Aptowicz KB, Goodrich
    CP, Sussman DM, Yodh AG. 2014. Vibrational and structural signatures of the crossover
    between dense glassy and sparse gel-like attractive colloidal packings. Physical
    Review E. 90(6), 062305.
  mla: Lohr, Matthew A., et al. “Vibrational and Structural Signatures of the Crossover
    between Dense Glassy and Sparse Gel-like Attractive Colloidal Packings.” <i>Physical
    Review E</i>, vol. 90, no. 6, 062305, American Physical Society, 2014, doi:<a
    href="https://doi.org/10.1103/physreve.90.062305">10.1103/physreve.90.062305</a>.
  short: M.A. Lohr, T. Still, R. Ganti, M.D. Gratale, Z.S. Davidson, K.B. Aptowicz,
    C.P. Goodrich, D.M. Sussman, A.G. Yodh, Physical Review E 90 (2014).
date_created: 2020-04-30T11:41:54Z
date_published: 2014-12-05T00:00:00Z
date_updated: 2021-01-12T08:15:24Z
day: '05'
doi: 10.1103/physreve.90.062305
extern: '1'
fulldoi: https://doi.org/10.1103/physreve.90.062305
intvolume: '        90'
issue: '6'
language:
- iso: eng
month: '12'
oa_version: None
publication: Physical Review E
publication_identifier:
  issn:
  - 1539-3755
  - 1550-2376
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Vibrational and structural signatures of the crossover between dense glassy
  and sparse gel-like attractive colloidal packings
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 90
year: '2014'
...
---
_id: '7769'
abstract:
- lang: eng
  text: 'Athermal packings of soft repulsive spheres exhibit a sharp jamming transition
    in the thermodynamic limit. Upon further compression, various structural and mechanical
    properties display clean power-law behavior over many decades in pressure. As
    with any phase transition, the rounding of such behavior in finite systems close
    to the transition plays an important role in understanding the nature of the transition
    itself. The situation for jamming is surprisingly rich: the assumption that jammed
    packings are isotropic is only strictly true in the large-size limit, and finite-size
    has a profound effect on the very meaning of jamming. Here, we provide a comprehensive
    numerical study of finite-size effects in sphere packings above the jamming transition,
    focusing on stability as well as the scaling of the contact number and the elastic
    response.'
article_number: '022138'
article_processing_charge: No
article_type: original
author:
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Simon
  full_name: Dagois-Bohy, Simon
  last_name: Dagois-Bohy
- first_name: Brian P.
  full_name: Tighe, Brian P.
  last_name: Tighe
- first_name: Martin
  full_name: van Hecke, Martin
  last_name: van Hecke
- first_name: Andrea J.
  full_name: Liu, Andrea J.
  last_name: Liu
- first_name: Sidney R.
  full_name: Nagel, Sidney R.
  last_name: Nagel
citation:
  ama: 'Goodrich CP, Dagois-Bohy S, Tighe BP, van Hecke M, Liu AJ, Nagel SR. Jamming
    in finite systems: Stability, anisotropy, fluctuations, and scaling. <i>Physical
    Review E</i>. 2014;90(2). doi:<a href="https://doi.org/10.1103/physreve.90.022138">10.1103/physreve.90.022138</a>'
  apa: 'Goodrich, C. P., Dagois-Bohy, S., Tighe, B. P., van Hecke, M., Liu, A. J.,
    &#38; Nagel, S. R. (2014). Jamming in finite systems: Stability, anisotropy, fluctuations,
    and scaling. <i>Physical Review E</i>. American Physical Society. <a href="https://doi.org/10.1103/physreve.90.022138">https://doi.org/10.1103/physreve.90.022138</a>'
  chicago: 'Goodrich, Carl Peter, Simon Dagois-Bohy, Brian P. Tighe, Martin van Hecke,
    Andrea J. Liu, and Sidney R. Nagel. “Jamming in Finite Systems: Stability, Anisotropy,
    Fluctuations, and Scaling.” <i>Physical Review E</i>. American Physical Society,
    2014. <a href="https://doi.org/10.1103/physreve.90.022138">https://doi.org/10.1103/physreve.90.022138</a>.'
  ieee: 'C. P. Goodrich, S. Dagois-Bohy, B. P. Tighe, M. van Hecke, A. J. Liu, and
    S. R. Nagel, “Jamming in finite systems: Stability, anisotropy, fluctuations,
    and scaling,” <i>Physical Review E</i>, vol. 90, no. 2. American Physical Society,
    2014.'
  ista: 'Goodrich CP, Dagois-Bohy S, Tighe BP, van Hecke M, Liu AJ, Nagel SR. 2014.
    Jamming in finite systems: Stability, anisotropy, fluctuations, and scaling. Physical
    Review E. 90(2), 022138.'
  mla: 'Goodrich, Carl Peter, et al. “Jamming in Finite Systems: Stability, Anisotropy,
    Fluctuations, and Scaling.” <i>Physical Review E</i>, vol. 90, no. 2, 022138,
    American Physical Society, 2014, doi:<a href="https://doi.org/10.1103/physreve.90.022138">10.1103/physreve.90.022138</a>.'
  short: C.P. Goodrich, S. Dagois-Bohy, B.P. Tighe, M. van Hecke, A.J. Liu, S.R. Nagel,
    Physical Review E 90 (2014).
date_created: 2020-04-30T11:42:09Z
date_published: 2014-08-27T00:00:00Z
date_updated: 2021-01-12T08:15:24Z
day: '27'
doi: 10.1103/physreve.90.022138
extern: '1'
fulldoi: https://doi.org/10.1103/physreve.90.022138
intvolume: '        90'
issue: '2'
language:
- iso: eng
month: '08'
oa_version: None
publication: Physical Review E
publication_identifier:
  issn:
  - 1539-3755
  - 1550-2376
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: 'Jamming in finite systems: Stability, anisotropy, fluctuations, and scaling'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 90
year: '2014'
...
---
_id: '7770'
abstract:
- lang: eng
  text: Packings of frictionless athermal particles that interact only when they overlap
    experience a jamming transition as a function of packing density. Such packings
    provide the foundation for the theory of jamming. This theory rests on the observation
    that, despite the multitude of disordered configurations, the mechanical response
    to linear order depends only on the distance to the transition. We investigate
    the validity and utility of such measurements that invoke the harmonic approximation
    and show that, despite particles coming in and out of contact, there is a well-defined
    linear regime in the thermodynamic limit.
article_number: '022201'
article_processing_charge: No
article_type: original
author:
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Andrea J.
  full_name: Liu, Andrea J.
  last_name: Liu
- first_name: Sidney R.
  full_name: Nagel, Sidney R.
  last_name: Nagel
citation:
  ama: Goodrich CP, Liu AJ, Nagel SR. Contact nonlinearities and linear response in
    jammed particulate packings. <i>Physical Review E</i>. 2014;90(2). doi:<a href="https://doi.org/10.1103/physreve.90.022201">10.1103/physreve.90.022201</a>
  apa: Goodrich, C. P., Liu, A. J., &#38; Nagel, S. R. (2014). Contact nonlinearities
    and linear response in jammed particulate packings. <i>Physical Review E</i>.
    American Physical Society. <a href="https://doi.org/10.1103/physreve.90.022201">https://doi.org/10.1103/physreve.90.022201</a>
  chicago: Goodrich, Carl Peter, Andrea J. Liu, and Sidney R. Nagel. “Contact Nonlinearities
    and Linear Response in Jammed Particulate Packings.” <i>Physical Review E</i>.
    American Physical Society, 2014. <a href="https://doi.org/10.1103/physreve.90.022201">https://doi.org/10.1103/physreve.90.022201</a>.
  ieee: C. P. Goodrich, A. J. Liu, and S. R. Nagel, “Contact nonlinearities and linear
    response in jammed particulate packings,” <i>Physical Review E</i>, vol. 90, no.
    2. American Physical Society, 2014.
  ista: Goodrich CP, Liu AJ, Nagel SR. 2014. Contact nonlinearities and linear response
    in jammed particulate packings. Physical Review E. 90(2), 022201.
  mla: Goodrich, Carl Peter, et al. “Contact Nonlinearities and Linear Response in
    Jammed Particulate Packings.” <i>Physical Review E</i>, vol. 90, no. 2, 022201,
    American Physical Society, 2014, doi:<a href="https://doi.org/10.1103/physreve.90.022201">10.1103/physreve.90.022201</a>.
  short: C.P. Goodrich, A.J. Liu, S.R. Nagel, Physical Review E 90 (2014).
date_created: 2020-04-30T11:42:24Z
date_published: 2014-08-04T00:00:00Z
date_updated: 2021-01-12T08:15:25Z
day: '04'
doi: 10.1103/physreve.90.022201
extern: '1'
fulldoi: https://doi.org/10.1103/physreve.90.022201
intvolume: '        90'
issue: '2'
language:
- iso: eng
month: '08'
oa_version: None
publication: Physical Review E
publication_identifier:
  issn:
  - 1539-3755
  - 1550-2376
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Contact nonlinearities and linear response in jammed particulate packings
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 90
year: '2014'
...
---
_id: '7771'
abstract:
- lang: eng
  text: 'In their Letter, Schreck, Bertrand, O''Hern and Shattuck [Phys. Rev. Lett.
    107, 078301 (2011)] study nonlinearities in jammed particulate systems that arise
    when contacts are altered. They conclude that there is "no harmonic regime in
    the large system limit for all compressions" and "at jamming onset for any system
    size." Their argument rests on the claim that for finite-range repulsive potentials,
    of the form used in studies of jamming, the breaking or forming of a single contact
    is sufficient to destroy the linear regime. We dispute these conclusions and argue
    that linear response is both justified and essential for understanding the nature
    of the jammed solid. '
article_number: '049801 '
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Andrea J.
  full_name: Liu, Andrea J.
  last_name: Liu
- first_name: Sidney R.
  full_name: Nagel, Sidney R.
  last_name: Nagel
citation:
  ama: Goodrich CP, Liu AJ, Nagel SR. Comment on “Repulsive contact interactions make
    jammed particulate systems inherently nonharmonic.” <i>Physical Review Letters</i>.
    2014;112(4). doi:<a href="https://doi.org/10.1103/physrevlett.112.049801">10.1103/physrevlett.112.049801</a>
  apa: Goodrich, C. P., Liu, A. J., &#38; Nagel, S. R. (2014). Comment on “Repulsive
    contact interactions make jammed particulate systems inherently nonharmonic.”
    <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/physrevlett.112.049801">https://doi.org/10.1103/physrevlett.112.049801</a>
  chicago: Goodrich, Carl Peter, Andrea J. Liu, and Sidney R. Nagel. “Comment on ‘Repulsive
    Contact Interactions Make Jammed Particulate Systems Inherently Nonharmonic.’”
    <i>Physical Review Letters</i>. American Physical Society, 2014. <a href="https://doi.org/10.1103/physrevlett.112.049801">https://doi.org/10.1103/physrevlett.112.049801</a>.
  ieee: C. P. Goodrich, A. J. Liu, and S. R. Nagel, “Comment on ‘Repulsive contact
    interactions make jammed particulate systems inherently nonharmonic,’” <i>Physical
    Review Letters</i>, vol. 112, no. 4. American Physical Society, 2014.
  ista: Goodrich CP, Liu AJ, Nagel SR. 2014. Comment on “Repulsive contact interactions
    make jammed particulate systems inherently nonharmonic”. Physical Review Letters.
    112(4), 049801.
  mla: Goodrich, Carl Peter, et al. “Comment on ‘Repulsive Contact Interactions Make
    Jammed Particulate Systems Inherently Nonharmonic.’” <i>Physical Review Letters</i>,
    vol. 112, no. 4, 049801, American Physical Society, 2014, doi:<a href="https://doi.org/10.1103/physrevlett.112.049801">10.1103/physrevlett.112.049801</a>.
  short: C.P. Goodrich, A.J. Liu, S.R. Nagel, Physical Review Letters 112 (2014).
date_created: 2020-04-30T11:42:39Z
date_published: 2014-04-20T00:00:00Z
date_updated: 2021-01-12T08:15:26Z
day: '20'
doi: 10.1103/physrevlett.112.049801
extern: '1'
external_id:
  arxiv:
  - '1306.1285'
fulldoi: https://doi.org/10.1103/physrevlett.112.049801
intvolume: '       112'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1306.1285
month: '04'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_identifier:
  issn:
  - 0031-9007
  - 1079-7114
publication_status: published
publisher: American Physical Society
status: public
title: Comment on “Repulsive contact interactions make jammed particulate systems
  inherently nonharmonic”
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2014'
...
---
_id: '7772'
abstract:
- lang: eng
  text: Particle tracking and displacement covariance matrix techniques are employed
    to investigate the phonon dispersion relations of two-dimensional colloidal glasses
    composed of soft, thermoresponsive microgel particles whose temperature-sensitive
    size permits in situ variation of particle packing fraction. Bulk, B, and shear,
    G, moduli of the colloidal glasses are extracted from the dispersion relations
    as a function of packing fraction, and variation of the ratio G/B with packing
    fraction is found to agree quantitatively with predictions for jammed packings
    of frictional soft particles. In addition, G and B individually agree with numerical
    predictions for frictional particles. This remarkable level of agreement enabled
    us to extract an energy scale for the interparticle interaction from the individual
    elastic constants and to derive an approximate estimate for the interparticle
    friction coefficient.
article_number: '012301'
article_processing_charge: No
article_type: original
author:
- first_name: Tim
  full_name: Still, Tim
  last_name: Still
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Ke
  full_name: Chen, Ke
  last_name: Chen
- first_name: Peter J.
  full_name: Yunker, Peter J.
  last_name: Yunker
- first_name: Samuel
  full_name: Schoenholz, Samuel
  last_name: Schoenholz
- first_name: Andrea J.
  full_name: Liu, Andrea J.
  last_name: Liu
- first_name: A. G.
  full_name: Yodh, A. G.
  last_name: Yodh
citation:
  ama: Still T, Goodrich CP, Chen K, et al. Phonon dispersion and elastic moduli of
    two-dimensional disordered colloidal packings of soft particles with frictional
    interactions. <i>Physical Review E</i>. 2014;89(1). doi:<a href="https://doi.org/10.1103/physreve.89.012301">10.1103/physreve.89.012301</a>
  apa: Still, T., Goodrich, C. P., Chen, K., Yunker, P. J., Schoenholz, S., Liu, A.
    J., &#38; Yodh, A. G. (2014). Phonon dispersion and elastic moduli of two-dimensional
    disordered colloidal packings of soft particles with frictional interactions.
    <i>Physical Review E</i>. American Physical Society. <a href="https://doi.org/10.1103/physreve.89.012301">https://doi.org/10.1103/physreve.89.012301</a>
  chicago: Still, Tim, Carl Peter Goodrich, Ke Chen, Peter J. Yunker, Samuel Schoenholz,
    Andrea J. Liu, and A. G. Yodh. “Phonon Dispersion and Elastic Moduli of Two-Dimensional
    Disordered Colloidal Packings of Soft Particles with Frictional Interactions.”
    <i>Physical Review E</i>. American Physical Society, 2014. <a href="https://doi.org/10.1103/physreve.89.012301">https://doi.org/10.1103/physreve.89.012301</a>.
  ieee: T. Still <i>et al.</i>, “Phonon dispersion and elastic moduli of two-dimensional
    disordered colloidal packings of soft particles with frictional interactions,”
    <i>Physical Review E</i>, vol. 89, no. 1. American Physical Society, 2014.
  ista: Still T, Goodrich CP, Chen K, Yunker PJ, Schoenholz S, Liu AJ, Yodh AG. 2014.
    Phonon dispersion and elastic moduli of two-dimensional disordered colloidal packings
    of soft particles with frictional interactions. Physical Review E. 89(1), 012301.
  mla: Still, Tim, et al. “Phonon Dispersion and Elastic Moduli of Two-Dimensional
    Disordered Colloidal Packings of Soft Particles with Frictional Interactions.”
    <i>Physical Review E</i>, vol. 89, no. 1, 012301, American Physical Society, 2014,
    doi:<a href="https://doi.org/10.1103/physreve.89.012301">10.1103/physreve.89.012301</a>.
  short: T. Still, C.P. Goodrich, K. Chen, P.J. Yunker, S. Schoenholz, A.J. Liu, A.G.
    Yodh, Physical Review E 89 (2014).
date_created: 2020-04-30T11:43:02Z
date_published: 2014-01-03T00:00:00Z
date_updated: 2021-01-12T08:15:26Z
day: '03'
doi: 10.1103/physreve.89.012301
extern: '1'
fulldoi: https://doi.org/10.1103/physreve.89.012301
intvolume: '        89'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
publication: Physical Review E
publication_identifier:
  issn:
  - 1539-3755
  - 1550-2376
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Phonon dispersion and elastic moduli of two-dimensional disordered colloidal
  packings of soft particles with frictional interactions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 89
year: '2014'
...
---
_id: '7773'
abstract:
- lang: eng
  text: 'For more than a century, physicists have described real solids in terms of
    perturbations about perfect crystalline order1. Such an approach takes us only
    so far: a glass, another ubiquitous form of rigid matter, cannot be described
    in any meaningful sense as a defected crystal2. Is there an opposite extreme to
    a crystal—a solid with complete disorder—that forms an alternative starting point
    for understanding real materials? Here, we argue that the solid comprising particles
    with finite-ranged interactions at the jamming transition3,4,5 constitutes such
    a limit. It has been shown that the physics associated with this transition can
    be extended to interactions that are long ranged6. We demonstrate that jamming
    physics is not restricted to amorphous systems, but dominates the behaviour of
    solids with surprisingly high order. Just as the free-electron and tight-binding
    models represent two idealized cases from which to understand electronic structure1,
    we identify two extreme limits of mechanical behaviour. Thus, the physics of jamming
    can be set side by side with the physics of crystals to provide an organizing
    structure for understanding the mechanical properties of solids over the entire
    spectrum of disorder.'
article_processing_charge: No
article_type: original
author:
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Andrea J.
  full_name: Liu, Andrea J.
  last_name: Liu
- first_name: Sidney R.
  full_name: Nagel, Sidney R.
  last_name: Nagel
citation:
  ama: Goodrich CP, Liu AJ, Nagel SR. Solids between the mechanical extremes of order
    and disorder. <i>Nature Physics</i>. 2014;10(8):578-581. doi:<a href="https://doi.org/10.1038/nphys3006">10.1038/nphys3006</a>
  apa: Goodrich, C. P., Liu, A. J., &#38; Nagel, S. R. (2014). Solids between the
    mechanical extremes of order and disorder. <i>Nature Physics</i>. Springer Nature.
    <a href="https://doi.org/10.1038/nphys3006">https://doi.org/10.1038/nphys3006</a>
  chicago: Goodrich, Carl Peter, Andrea J. Liu, and Sidney R. Nagel. “Solids between
    the Mechanical Extremes of Order and Disorder.” <i>Nature Physics</i>. Springer
    Nature, 2014. <a href="https://doi.org/10.1038/nphys3006">https://doi.org/10.1038/nphys3006</a>.
  ieee: C. P. Goodrich, A. J. Liu, and S. R. Nagel, “Solids between the mechanical
    extremes of order and disorder,” <i>Nature Physics</i>, vol. 10, no. 8. Springer
    Nature, pp. 578–581, 2014.
  ista: Goodrich CP, Liu AJ, Nagel SR. 2014. Solids between the mechanical extremes
    of order and disorder. Nature Physics. 10(8), 578–581.
  mla: Goodrich, Carl Peter, et al. “Solids between the Mechanical Extremes of Order
    and Disorder.” <i>Nature Physics</i>, vol. 10, no. 8, Springer Nature, 2014, pp.
    578–81, doi:<a href="https://doi.org/10.1038/nphys3006">10.1038/nphys3006</a>.
  short: C.P. Goodrich, A.J. Liu, S.R. Nagel, Nature Physics 10 (2014) 578–581.
date_created: 2020-04-30T11:43:29Z
date_published: 2014-07-06T00:00:00Z
date_updated: 2021-01-12T08:15:26Z
day: '06'
doi: 10.1038/nphys3006
extern: '1'
fulldoi: https://doi.org/10.1038/nphys3006
intvolume: '        10'
issue: '8'
language:
- iso: eng
month: '07'
oa_version: None
page: 578-581
publication: Nature Physics
publication_identifier:
  issn:
  - 1745-2473
  - 1745-2481
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Solids between the mechanical extremes of order and disorder
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2014'
...
---
_id: '8021'
abstract:
- lang: eng
  text: 'Most excitatory inputs in the mammalian brain are made on dendritic spines,
    rather than on dendritic shafts. Spines compartmentalize calcium, and this biochemical
    isolation can underlie input-specific synaptic plasticity, providing a raison
    d''etre for spines. However, recent results indicate that the spine can experience
    a membrane potential different from that in the parent dendrite, as though the
    spine neck electrically isolated the spine. Here we use two-photon calcium imaging
    of mouse neocortical pyramidal neurons to analyze the correlation between the
    morphologies of spines activated under minimal synaptic stimulation and the excitatory
    postsynaptic potentials they generate. We find that excitatory postsynaptic potential
    amplitudes are inversely correlated with spine neck lengths. Furthermore, a spike
    timing-dependent plasticity protocol, in which two-photon glutamate uncaging over
    a spine is paired with postsynaptic spikes, produces rapid shrinkage of the spine
    neck and concomitant increases in the amplitude of the evoked spine potentials.
    Using numerical simulations, we explore the parameter regimes for the spine neck
    resistance and synaptic conductance changes necessary to explain our observations.
    Our data, directly correlating synaptic and morphological plasticity, imply that
    long-necked spines have small or negligible somatic voltage contributions, but
    that, upon synaptic stimulation paired with postsynaptic activity, they can shorten
    their necks and increase synaptic efficacy, thus changing the input/output gain
    of pyramidal neurons. '
article_processing_charge: No
article_type: original
author:
- first_name: R.
  full_name: Araya, R.
  last_name: Araya
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: R.
  full_name: Yuste, R.
  last_name: Yuste
citation:
  ama: Araya R, Vogels TP, Yuste R. Activity-dependent dendritic spine neck changes
    are correlated with synaptic strength. <i>Proceedings of the National Academy
    of Sciences</i>. 2014;111(28):E2895-E2904. doi:<a href="https://doi.org/10.1073/pnas.1321869111">10.1073/pnas.1321869111</a>
  apa: Araya, R., Vogels, T. P., &#38; Yuste, R. (2014). Activity-dependent dendritic
    spine neck changes are correlated with synaptic strength. <i>Proceedings of the
    National Academy of Sciences</i>. Proceedings of the National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.1321869111">https://doi.org/10.1073/pnas.1321869111</a>
  chicago: Araya, R., Tim P Vogels, and R. Yuste. “Activity-Dependent Dendritic Spine
    Neck Changes Are Correlated with Synaptic Strength.” <i>Proceedings of the National
    Academy of Sciences</i>. Proceedings of the National Academy of Sciences, 2014.
    <a href="https://doi.org/10.1073/pnas.1321869111">https://doi.org/10.1073/pnas.1321869111</a>.
  ieee: R. Araya, T. P. Vogels, and R. Yuste, “Activity-dependent dendritic spine
    neck changes are correlated with synaptic strength,” <i>Proceedings of the National
    Academy of Sciences</i>, vol. 111, no. 28. Proceedings of the National Academy
    of Sciences, pp. E2895–E2904, 2014.
  ista: Araya R, Vogels TP, Yuste R. 2014. Activity-dependent dendritic spine neck
    changes are correlated with synaptic strength. Proceedings of the National Academy
    of Sciences. 111(28), E2895–E2904.
  mla: Araya, R., et al. “Activity-Dependent Dendritic Spine Neck Changes Are Correlated
    with Synaptic Strength.” <i>Proceedings of the National Academy of Sciences</i>,
    vol. 111, no. 28, Proceedings of the National Academy of Sciences, 2014, pp. E2895–904,
    doi:<a href="https://doi.org/10.1073/pnas.1321869111">10.1073/pnas.1321869111</a>.
  short: R. Araya, T.P. Vogels, R. Yuste, Proceedings of the National Academy of Sciences
    111 (2014) E2895–E2904.
date_created: 2020-06-25T13:06:24Z
date_published: 2014-07-15T00:00:00Z
date_updated: 2021-01-12T08:16:34Z
day: '15'
doi: 10.1073/pnas.1321869111
extern: '1'
external_id:
  pmid:
  - '24982196'
fulldoi: https://doi.org/10.1073/pnas.1321869111
intvolume: '       111'
issue: '28'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4104910/
month: '07'
oa: 1
oa_version: Published Version
page: E2895-E2904
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
status: public
title: Activity-dependent dendritic spine neck changes are correlated with synaptic
  strength
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 111
year: '2014'
...
---
_id: '8022'
abstract:
- lang: eng
  text: Populations of neurons in motor cortex engage in complex transient dynamics
    of large amplitude during the execution of limb movements. Traditional network
    models with stochastically assigned synapses cannot reproduce this behavior. Here
    we introduce a class of cortical architectures with strong and random excitatory
    recurrence that is stabilized by intricate, fine-tuned inhibition, optimized from
    a control theory perspective. Such networks transiently amplify specific activity
    states and can be used to reliably execute multidimensional movement patterns.
    Similar to the experimental observations, these transients must be preceded by
    a steady-state initialization phase from which the network relaxes back into the
    background state by way of complex internal dynamics. In our networks, excitation
    and inhibition are as tightly balanced as recently reported in experiments across
    several brain areas, suggesting inhibitory control of complex excitatory recurrence
    as a generic organizational principle in cortex.
article_processing_charge: No
article_type: original
author:
- first_name: Guillaume
  full_name: Hennequin, Guillaume
  last_name: Hennequin
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: Wulfram
  full_name: Gerstner, Wulfram
  last_name: Gerstner
citation:
  ama: Hennequin G, Vogels TP, Gerstner W. Optimal control of transient dynamics in
    balanced networks supports generation of complex movements. <i>Neuron</i>. 2014;82(6):1394-1406.
    doi:<a href="https://doi.org/10.1016/j.neuron.2014.04.045">10.1016/j.neuron.2014.04.045</a>
  apa: Hennequin, G., Vogels, T. P., &#38; Gerstner, W. (2014). Optimal control of
    transient dynamics in balanced networks supports generation of complex movements.
    <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2014.04.045">https://doi.org/10.1016/j.neuron.2014.04.045</a>
  chicago: Hennequin, Guillaume, Tim P Vogels, and Wulfram Gerstner. “Optimal Control
    of Transient Dynamics in Balanced Networks Supports Generation of Complex Movements.”
    <i>Neuron</i>. Elsevier, 2014. <a href="https://doi.org/10.1016/j.neuron.2014.04.045">https://doi.org/10.1016/j.neuron.2014.04.045</a>.
  ieee: G. Hennequin, T. P. Vogels, and W. Gerstner, “Optimal control of transient
    dynamics in balanced networks supports generation of complex movements,” <i>Neuron</i>,
    vol. 82, no. 6. Elsevier, pp. 1394–1406, 2014.
  ista: Hennequin G, Vogels TP, Gerstner W. 2014. Optimal control of transient dynamics
    in balanced networks supports generation of complex movements. Neuron. 82(6),
    1394–1406.
  mla: Hennequin, Guillaume, et al. “Optimal Control of Transient Dynamics in Balanced
    Networks Supports Generation of Complex Movements.” <i>Neuron</i>, vol. 82, no.
    6, Elsevier, 2014, pp. 1394–406, doi:<a href="https://doi.org/10.1016/j.neuron.2014.04.045">10.1016/j.neuron.2014.04.045</a>.
  short: G. Hennequin, T.P. Vogels, W. Gerstner, Neuron 82 (2014) 1394–1406.
date_created: 2020-06-25T13:07:37Z
date_published: 2014-06-18T00:00:00Z
date_updated: 2021-01-12T08:16:35Z
day: '18'
doi: 10.1016/j.neuron.2014.04.045
extern: '1'
external_id:
  pmid:
  - '24945778'
fulldoi: https://doi.org/10.1016/j.neuron.2014.04.045
intvolume: '        82'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364799/
month: '06'
oa: 1
oa_version: Submitted Version
page: 1394-1406
pmid: 1
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Optimal control of transient dynamics in balanced networks supports generation
  of complex movements
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 82
year: '2014'
...
---
_id: '8023'
abstract:
- lang: eng
  text: Uniform random sparse network architectures are ubiquitous in computational
    neuroscience, but the implicit hypothesis that they are a good representation
    of real neuronal networks has been met with skepticism. Here we used two experimental
    data sets, a study of triplet connectivity statistics and a data set measuring
    neuronal responses to channelrhodopsin stimuli, to evaluate the fidelity of thousands
    of model networks. Network architectures comprised three neuron types (excitatory,
    fast spiking, and nonfast spiking inhibitory) and were created from a set of rules
    that govern the statistics of the resulting connection types. In a high-dimensional
    parameter scan, we varied the degree distributions (i.e., how many cells each
    neuron connects with) and the synaptic weight correlations of synapses from or
    onto the same neuron. These variations converted initially uniform random and
    homogeneously connected networks, in which every neuron sent and received equal
    numbers of synapses with equal synaptic strength distributions, to highly heterogeneous
    networks in which the number of synapses per neuron, as well as average synaptic
    strength of synapses from or to a neuron were variable. By evaluating the impact
    of each variable on the network structure and dynamics, and their similarity to
    the experimental data, we could falsify the uniform random sparse connectivity
    hypothesis for 7 of 36 connectivity parameters, but we also confirmed the hypothesis
    in 8 cases. Twenty-one parameters had no substantial impact on the results of
    the test protocols we used.
article_processing_charge: No
article_type: original
author:
- first_name: Christian
  full_name: Tomm, Christian
  last_name: Tomm
- first_name: Michael
  full_name: Avermann, Michael
  last_name: Avermann
- first_name: Carl
  full_name: Petersen, Carl
  last_name: Petersen
- first_name: Wulfram
  full_name: Gerstner, Wulfram
  last_name: Gerstner
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
citation:
  ama: Tomm C, Avermann M, Petersen C, Gerstner W, Vogels TP. Connection-type-specific
    biases make uniform random network models consistent with cortical recordings.
    <i>Journal of Neurophysiology</i>. 2014;112(8):1801-1814. doi:<a href="https://doi.org/10.1152/jn.00629.2013">10.1152/jn.00629.2013</a>
  apa: Tomm, C., Avermann, M., Petersen, C., Gerstner, W., &#38; Vogels, T. P. (2014).
    Connection-type-specific biases make uniform random network models consistent
    with cortical recordings. <i>Journal of Neurophysiology</i>. American Physiological
    Society. <a href="https://doi.org/10.1152/jn.00629.2013">https://doi.org/10.1152/jn.00629.2013</a>
  chicago: Tomm, Christian, Michael Avermann, Carl Petersen, Wulfram Gerstner, and
    Tim P Vogels. “Connection-Type-Specific Biases Make Uniform Random Network Models
    Consistent with Cortical Recordings.” <i>Journal of Neurophysiology</i>. American
    Physiological Society, 2014. <a href="https://doi.org/10.1152/jn.00629.2013">https://doi.org/10.1152/jn.00629.2013</a>.
  ieee: C. Tomm, M. Avermann, C. Petersen, W. Gerstner, and T. P. Vogels, “Connection-type-specific
    biases make uniform random network models consistent with cortical recordings,”
    <i>Journal of Neurophysiology</i>, vol. 112, no. 8. American Physiological Society,
    pp. 1801–1814, 2014.
  ista: Tomm C, Avermann M, Petersen C, Gerstner W, Vogels TP. 2014. Connection-type-specific
    biases make uniform random network models consistent with cortical recordings.
    Journal of Neurophysiology. 112(8), 1801–1814.
  mla: Tomm, Christian, et al. “Connection-Type-Specific Biases Make Uniform Random
    Network Models Consistent with Cortical Recordings.” <i>Journal of Neurophysiology</i>,
    vol. 112, no. 8, American Physiological Society, 2014, pp. 1801–14, doi:<a href="https://doi.org/10.1152/jn.00629.2013">10.1152/jn.00629.2013</a>.
  short: C. Tomm, M. Avermann, C. Petersen, W. Gerstner, T.P. Vogels, Journal of Neurophysiology
    112 (2014) 1801–1814.
date_created: 2020-06-25T13:08:30Z
date_published: 2014-10-15T00:00:00Z
date_updated: 2021-01-12T08:16:35Z
day: '15'
ddc:
- '570'
doi: 10.1152/jn.00629.2013
extern: '1'
external_id:
  pmid:
  - '24944218'
file:
- access_level: open_access
  checksum: 7c06a086da6f924342650de6dc555c3f
  content_type: application/pdf
  creator: cziletti
  date_created: 2020-07-16T10:12:13Z
  date_updated: 2020-07-16T10:12:13Z
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  file_name: 2014_JNeurophysiol_Tomm.pdf
  file_size: 1632295
  relation: main_file
  success: 1
file_date_updated: 2020-07-16T10:12:13Z
fulldoi: https://doi.org/10.1152/jn.00629.2013
has_accepted_license: '1'
intvolume: '       112'
issue: '8'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 1801-1814
pmid: 1
publication: Journal of Neurophysiology
publication_identifier:
  eissn:
  - 1522-1598
  issn:
  - 0022-3077
publication_status: published
publisher: American Physiological Society
quality_controlled: '1'
status: public
title: Connection-type-specific biases make uniform random network models consistent
  with cortical recordings
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 112
year: '2014'
...
---
OA_place: publisher
OA_type: free access
_id: '8044'
abstract:
- lang: eng
  text: Many questions concerning models in quantum mechanics require a detailed analysis
    of the spectrum of the corresponding Hamiltonian, a linear operator on a suitable
    Hilbert space. Of particular relevance for an understanding of the low-temperature
    properties of a system is the structure of the excitation spectrum, which is the
    part of the spectrum close to the spectral bottom. We present recent progress
    on this question for bosonic many-body quantum systems with weak two-body interactions.
    Such system are currently of great interest, due to their experimental realization
    in ultra-cold atomic gases. We investigate the accuracy of the Bogoliubov approximations,
    which predicts that the low-energy spectrum is made up of sums of elementary excitations,
    with linear dispersion law at low momentum. The latter property is crucial for
    the superfluid behavior the system.
article_processing_charge: No
author:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: 'Seiringer R. Structure of the excitation spectrum for many-body quantum systems.
    In: <i>Proceeding of the International Congress of Mathematicans</i>. Vol 3. International
    Congress of Mathematicians; 2014:1175-1194.'
  apa: 'Seiringer, R. (2014). Structure of the excitation spectrum for many-body quantum
    systems. In <i>Proceeding of the International Congress of Mathematicans</i> (Vol.
    3, pp. 1175–1194). Seoul, South Korea: International Congress of Mathematicians.'
  chicago: Seiringer, Robert. “Structure of the Excitation Spectrum for Many-Body
    Quantum Systems.” In <i>Proceeding of the International Congress of Mathematicans</i>,
    3:1175–94. International Congress of Mathematicians, 2014.
  ieee: R. Seiringer, “Structure of the excitation spectrum for many-body quantum
    systems,” in <i>Proceeding of the International Congress of Mathematicans</i>,
    Seoul, South Korea, 2014, vol. 3, pp. 1175–1194.
  ista: 'Seiringer R. 2014. Structure of the excitation spectrum for many-body quantum
    systems. Proceeding of the International Congress of Mathematicans. ICM: International
    Congress of Mathematicans vol. 3, 1175–1194.'
  mla: Seiringer, Robert. “Structure of the Excitation Spectrum for Many-Body Quantum
    Systems.” <i>Proceeding of the International Congress of Mathematicans</i>, vol.
    3, International Congress of Mathematicians, 2014, pp. 1175–94.
  short: R. Seiringer, in:, Proceeding of the International Congress of Mathematicans,
    International Congress of Mathematicians, 2014, pp. 1175–1194.
conference:
  end_date: 2014-08-21
  location: Seoul, South Korea
  name: 'ICM: International Congress of Mathematicans'
  start_date: 2014-08-13
corr_author: '1'
date_created: 2020-06-29T07:59:35Z
date_published: 2014-08-01T00:00:00Z
date_updated: 2026-06-18T19:30:06Z
day: '01'
ddc:
- '500'
department:
- _id: RoSe
intvolume: '         3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.icm2014.org/en/vod/proceedings.html
month: '08'
oa: 1
oa_version: Published Version
page: 1175-1194
publication: Proceeding of the International Congress of Mathematicans
publication_identifier:
  isbn:
  - '9788961058063'
publication_status: published
publisher: International Congress of Mathematicians
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structure of the excitation spectrum for many-body quantum systems
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2014'
...
---
_id: '8244'
abstract:
- lang: eng
  text: Passive immunotherapy with monoclonal antibodies represents a cornerstone
    of human anticancer therapies, but has not been established in veterinary medicine
    yet. As the tumor-associated antigen EGFR (ErbB-1) is highly conserved between
    humans and dogs, and considering the effectiveness of the anti-EGFR antibody cetuximab
    in human clinical oncology, we present here a “caninized” version of this antibody,
    can225IgG, for comparative oncology studies. Variable region genes of 225, the
    murine precursor of cetuximab, were fused with canine constant heavy gamma and
    kappa chain genes, respectively, and transfected into Chinese hamster ovary (CHO)
    DUKX-B11 cells. Of note, 480 clones were screened and the best clones were selected
    according to productivity and highest specificity in EGFR-coated ELISA. Upon purification
    with Protein G, the recombinant cetuximab-like canine IgG was tested for integrity,
    correct assembly, and functionality. Specific binding to the surface of EGFR-overexpressing
    cells was assessed by flow cytometry and immunofluorescence; moreover, binding
    to canine mammary tissue was demonstrated by immunohistochemistry. In cell viability
    and proliferation assays, incubation with can225IgG led to significant tumor cell
    growth inhibition. Moreover, this antibody mediated significant tumor cell killing
    via phagocytosis in vitro. We thus present here, for the first time, the generation
    of a canine IgG antibody and its hypothetical structure. On the basis of its cetuximab-like
    binding site, on the one hand, and the expression of a 91% homologous EGFR molecule
    in canine cancer, on the other hand, this antibody may be a promising research
    compound to establish passive immunotherapy in dog patients with cancer.
article_processing_charge: No
article_type: original
author:
- first_name: J.
  full_name: Singer, J.
  last_name: Singer
- first_name: Judit
  full_name: Fazekas, Judit
  id: 36432834-F248-11E8-B48F-1D18A9856A87
  last_name: Fazekas
  orcid: 0000-0002-8777-3502
- first_name: W.
  full_name: Wang, W.
  last_name: Wang
- first_name: M.
  full_name: Weichselbaumer, M.
  last_name: Weichselbaumer
- first_name: M.
  full_name: Matz, M.
  last_name: Matz
- first_name: A.
  full_name: Mader, A.
  last_name: Mader
- first_name: W.
  full_name: Steinfellner, W.
  last_name: Steinfellner
- first_name: S.
  full_name: Meitz, S.
  last_name: Meitz
- first_name: D.
  full_name: Mechtcheriakova, D.
  last_name: Mechtcheriakova
- first_name: Y.
  full_name: Sobanov, Y.
  last_name: Sobanov
- first_name: M.
  full_name: Willmann, M.
  last_name: Willmann
- first_name: T.
  full_name: Stockner, T.
  last_name: Stockner
- first_name: E.
  full_name: Spillner, E.
  last_name: Spillner
- first_name: R.
  full_name: Kunert, R.
  last_name: Kunert
- first_name: E.
  full_name: Jensen-Jarolim, E.
  last_name: Jensen-Jarolim
citation:
  ama: Singer J, Singer J, Wang W, et al. Generation of a canine anti-EGFR (ErbB-1)
    antibody for passive immunotherapy in dog cancer patients. <i>Molecular Cancer
    Therapeutics</i>. 2014;13(7):1777-1790. doi:<a href="https://doi.org/10.1158/1535-7163.mct-13-0288">10.1158/1535-7163.mct-13-0288</a>
  apa: Singer, J., Singer, J., Wang, W., Weichselbaumer, M., Matz, M., Mader, A.,
    … Jensen-Jarolim, E. (2014). Generation of a canine anti-EGFR (ErbB-1) antibody
    for passive immunotherapy in dog cancer patients. <i>Molecular Cancer Therapeutics</i>.
    American Association for Cancer Research. <a href="https://doi.org/10.1158/1535-7163.mct-13-0288">https://doi.org/10.1158/1535-7163.mct-13-0288</a>
  chicago: Singer, J., Judit Singer, W. Wang, M. Weichselbaumer, M. Matz, A. Mader,
    W. Steinfellner, et al. “Generation of a Canine Anti-EGFR (ErbB-1) Antibody for
    Passive Immunotherapy in Dog Cancer Patients.” <i>Molecular Cancer Therapeutics</i>.
    American Association for Cancer Research, 2014. <a href="https://doi.org/10.1158/1535-7163.mct-13-0288">https://doi.org/10.1158/1535-7163.mct-13-0288</a>.
  ieee: J. Singer <i>et al.</i>, “Generation of a canine anti-EGFR (ErbB-1) antibody
    for passive immunotherapy in dog cancer patients,” <i>Molecular Cancer Therapeutics</i>,
    vol. 13, no. 7. American Association for Cancer Research, pp. 1777–1790, 2014.
  ista: Singer J, Singer J, Wang W, Weichselbaumer M, Matz M, Mader A, Steinfellner
    W, Meitz S, Mechtcheriakova D, Sobanov Y, Willmann M, Stockner T, Spillner E,
    Kunert R, Jensen-Jarolim E. 2014. Generation of a canine anti-EGFR (ErbB-1) antibody
    for passive immunotherapy in dog cancer patients. Molecular Cancer Therapeutics.
    13(7), 1777–1790.
  mla: Singer, J., et al. “Generation of a Canine Anti-EGFR (ErbB-1) Antibody for
    Passive Immunotherapy in Dog Cancer Patients.” <i>Molecular Cancer Therapeutics</i>,
    vol. 13, no. 7, American Association for Cancer Research, 2014, pp. 1777–90, doi:<a
    href="https://doi.org/10.1158/1535-7163.mct-13-0288">10.1158/1535-7163.mct-13-0288</a>.
  short: J. Singer, J. Singer, W. Wang, M. Weichselbaumer, M. Matz, A. Mader, W. Steinfellner,
    S. Meitz, D. Mechtcheriakova, Y. Sobanov, M. Willmann, T. Stockner, E. Spillner,
    R. Kunert, E. Jensen-Jarolim, Molecular Cancer Therapeutics 13 (2014) 1777–1790.
date_created: 2020-08-10T11:54:29Z
date_published: 2014-07-01T00:00:00Z
date_updated: 2021-01-12T08:17:42Z
day: '01'
doi: 10.1158/1535-7163.mct-13-0288
extern: '1'
fulldoi: https://doi.org/10.1158/1535-7163.mct-13-0288
intvolume: '        13'
issue: '7'
language:
- iso: eng
month: '07'
oa_version: None
page: 1777-1790
publication: Molecular Cancer Therapeutics
publication_identifier:
  issn:
  - 1535-7163
  - 1538-8514
publication_status: published
publisher: American Association for Cancer Research
quality_controlled: '1'
status: public
title: Generation of a canine anti-EGFR (ErbB-1) antibody for passive immunotherapy
  in dog cancer patients
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2014'
...
