---
_id: '7293'
abstract:
- lang: eng
  text: If proton exchange membrane fuel cells (PEMFC) are ever to succeed in sustainable
    energy landscape as a potential zero emission technology, it is inevitable to
    reduce electricity production cost associated mainly with its MEAs, cell hardware
    and gas storage units. We demonstrate a diverse strategy for achieving this target
    with a concomitant amplification of its specific energy and power, by rolling
    a thin graphene oxide (GO) based MEA alone into a tubular and air breathing architecture
    with internal fuel storage. The unique properties of GO being a barrier for molecular
    fuels and proton conducting to construct a GO based cylindrical MEA. This makes
    the tubular PEMFC ∼75 times lighter, featuring ∼37 and ∼92 times respectively,
    the power and energy per overall weight, making it a potential candidate for portable
    applications. The intrinsic electrochemical kinetics at the three-phase boundary
    are somewhat affected by the bending of the MEA, albeit at overall reduction in
    power production cost.
article_processing_charge: No
article_type: original
author:
- first_name: Ravikumar
  full_name: Thimmappa, Ravikumar
  last_name: Thimmappa
- first_name: Mruthyunjayachari
  full_name: Chattanahalli Devendrachari, Mruthyunjayachari
  last_name: Chattanahalli Devendrachari
- first_name: Shahid
  full_name: Shafi, Shahid
  last_name: Shafi
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Musthafa
  full_name: Ottakam Thotiyl, Musthafa
  last_name: Ottakam Thotiyl
citation:
  ama: Thimmappa R, Chattanahalli Devendrachari M, Shafi S, Freunberger SA, Ottakam
    Thotiyl M. Proton conducting hollow graphene oxide cylinder as molecular fuel
    barrier for tubular H2-air fuel cell. <i>International Journal of Hydrogen Energy</i>.
    2016;41(47):22305-22315. doi:<a href="https://doi.org/10.1016/j.ijhydene.2016.08.057">10.1016/j.ijhydene.2016.08.057</a>
  apa: Thimmappa, R., Chattanahalli Devendrachari, M., Shafi, S., Freunberger, S.
    A., &#38; Ottakam Thotiyl, M. (2016). Proton conducting hollow graphene oxide
    cylinder as molecular fuel barrier for tubular H2-air fuel cell. <i>International
    Journal of Hydrogen Energy</i>. Elsevier. <a href="https://doi.org/10.1016/j.ijhydene.2016.08.057">https://doi.org/10.1016/j.ijhydene.2016.08.057</a>
  chicago: Thimmappa, Ravikumar, Mruthyunjayachari Chattanahalli Devendrachari, Shahid
    Shafi, Stefan Alexander Freunberger, and Musthafa Ottakam Thotiyl. “Proton Conducting
    Hollow Graphene Oxide Cylinder as Molecular Fuel Barrier for Tubular H2-Air Fuel
    Cell.” <i>International Journal of Hydrogen Energy</i>. Elsevier, 2016. <a href="https://doi.org/10.1016/j.ijhydene.2016.08.057">https://doi.org/10.1016/j.ijhydene.2016.08.057</a>.
  ieee: R. Thimmappa, M. Chattanahalli Devendrachari, S. Shafi, S. A. Freunberger,
    and M. Ottakam Thotiyl, “Proton conducting hollow graphene oxide cylinder as molecular
    fuel barrier for tubular H2-air fuel cell,” <i>International Journal of Hydrogen
    Energy</i>, vol. 41, no. 47. Elsevier, pp. 22305–22315, 2016.
  ista: Thimmappa R, Chattanahalli Devendrachari M, Shafi S, Freunberger SA, Ottakam
    Thotiyl M. 2016. Proton conducting hollow graphene oxide cylinder as molecular
    fuel barrier for tubular H2-air fuel cell. International Journal of Hydrogen Energy.
    41(47), 22305–22315.
  mla: Thimmappa, Ravikumar, et al. “Proton Conducting Hollow Graphene Oxide Cylinder
    as Molecular Fuel Barrier for Tubular H2-Air Fuel Cell.” <i>International Journal
    of Hydrogen Energy</i>, vol. 41, no. 47, Elsevier, 2016, pp. 22305–15, doi:<a
    href="https://doi.org/10.1016/j.ijhydene.2016.08.057">10.1016/j.ijhydene.2016.08.057</a>.
  short: R. Thimmappa, M. Chattanahalli Devendrachari, S. Shafi, S.A. Freunberger,
    M. Ottakam Thotiyl, International Journal of Hydrogen Energy 41 (2016) 22305–22315.
date_created: 2020-01-15T12:15:57Z
date_published: 2016-12-21T00:00:00Z
date_updated: 2021-01-12T08:12:49Z
day: '21'
doi: 10.1016/j.ijhydene.2016.08.057
extern: '1'
intvolume: '        41'
issue: '47'
language:
- iso: eng
month: '12'
oa_version: None
page: 22305-22315
publication: International Journal of Hydrogen Energy
publication_identifier:
  issn:
  - 0360-3199
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Proton conducting hollow graphene oxide cylinder as molecular fuel barrier
  for tubular H2-air fuel cell
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 41
year: '2016'
...
---
_id: '7294'
abstract:
- lang: eng
  text: Mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres were prepared by
    non-hydrolytic sol–gel from TiCl4, VOCl3, and iPr2O at 110 °C without any solvent
    or additives. The samples were characterized by elemental analysis, X-ray diffraction,
    Raman spectroscopy, scanning electron microscopy, nitrogen physisorption, and
    impedance measurements. At low vanadium loadings, only TiO2 anatase was detected,
    and V2O5 scherbinaite was also detected at high vanadium loadings. The texture
    of the samples depended on the V loading, but all the samples appeared built of
    primary nanoparticles (≈10–20 nm in size) that aggregate to form mesoporous micron-sized
    spheres. The lithium insertion properties of these materials were evaluated by
    galvanostatic measurements taken using coin-type cells, in view of their application
    as electrode for rechargeable Li-ion batteries. The mesoporous TiO2 microspheres
    showed good performances, with a specific reversible capacity of 145 and 128 mAh
    g−1 at C/2 and C, respectively (C = 335.6 mA g−1), good coulombic efficiency,
    and a moderate capacity fade (6 %) from the 2nd to the 20th cycle at C/20. Although
    the addition of V effectively increased the electronic conductivity of the powders,
    the specific reversible capacity and cycling performances of the TiO2–V2O5 samples
    were only minimally improved for a 5 at% V loading and were lower at higher V
    loading.
article_processing_charge: No
article_type: original
author:
- first_name: A. M.
  full_name: Escamilla-Pérez, A. M.
  last_name: Escamilla-Pérez
- first_name: N.
  full_name: Louvain, N.
  last_name: Louvain
- first_name: M.
  full_name: Kaschowitz, M.
  last_name: Kaschowitz
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: O.
  full_name: Fontaine, O.
  last_name: Fontaine
- first_name: B.
  full_name: Boury, B.
  last_name: Boury
- first_name: N.
  full_name: Brun, N.
  last_name: Brun
- first_name: P. H.
  full_name: Mutin, P. H.
  last_name: Mutin
citation:
  ama: Escamilla-Pérez AM, Louvain N, Kaschowitz M, et al. Lithium insertion properties
    of mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic
    sol–gel. <i>Journal of Sol-Gel Science and Technology</i>. 2016;79(2):270-278.
    doi:<a href="https://doi.org/10.1007/s10971-016-4037-9">10.1007/s10971-016-4037-9</a>
  apa: Escamilla-Pérez, A. M., Louvain, N., Kaschowitz, M., Freunberger, S. A., Fontaine,
    O., Boury, B., … Mutin, P. H. (2016). Lithium insertion properties of mesoporous
    nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel.
    <i>Journal of Sol-Gel Science and Technology</i>. Springer Nature. <a href="https://doi.org/10.1007/s10971-016-4037-9">https://doi.org/10.1007/s10971-016-4037-9</a>
  chicago: Escamilla-Pérez, A. M., N. Louvain, M. Kaschowitz, Stefan Alexander Freunberger,
    O. Fontaine, B. Boury, N. Brun, and P. H. Mutin. “Lithium Insertion Properties
    of Mesoporous Nanocrystalline TiO2 and TiO2–V2O5 Microspheres Prepared by Non-Hydrolytic
    Sol–Gel.” <i>Journal of Sol-Gel Science and Technology</i>. Springer Nature, 2016.
    <a href="https://doi.org/10.1007/s10971-016-4037-9">https://doi.org/10.1007/s10971-016-4037-9</a>.
  ieee: A. M. Escamilla-Pérez <i>et al.</i>, “Lithium insertion properties of mesoporous
    nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel,”
    <i>Journal of Sol-Gel Science and Technology</i>, vol. 79, no. 2. Springer Nature,
    pp. 270–278, 2016.
  ista: Escamilla-Pérez AM, Louvain N, Kaschowitz M, Freunberger SA, Fontaine O, Boury
    B, Brun N, Mutin PH. 2016. Lithium insertion properties of mesoporous nanocrystalline
    TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel. Journal of
    Sol-Gel Science and Technology. 79(2), 270–278.
  mla: Escamilla-Pérez, A. M., et al. “Lithium Insertion Properties of Mesoporous
    Nanocrystalline TiO2 and TiO2–V2O5 Microspheres Prepared by Non-Hydrolytic Sol–Gel.”
    <i>Journal of Sol-Gel Science and Technology</i>, vol. 79, no. 2, Springer Nature,
    2016, pp. 270–78, doi:<a href="https://doi.org/10.1007/s10971-016-4037-9">10.1007/s10971-016-4037-9</a>.
  short: A.M. Escamilla-Pérez, N. Louvain, M. Kaschowitz, S.A. Freunberger, O. Fontaine,
    B. Boury, N. Brun, P.H. Mutin, Journal of Sol-Gel Science and Technology 79 (2016)
    270–278.
date_created: 2020-01-15T12:16:08Z
date_published: 2016-04-08T00:00:00Z
date_updated: 2021-01-12T08:12:49Z
day: '08'
doi: 10.1007/s10971-016-4037-9
extern: '1'
intvolume: '        79'
issue: '2'
language:
- iso: eng
month: '04'
oa_version: None
page: 270-278
publication: Journal of Sol-Gel Science and Technology
publication_identifier:
  issn:
  - 0928-0707
  - 1573-4846
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Lithium insertion properties of mesoporous nanocrystalline TiO2 and TiO2–V2O5
  microspheres prepared by non-hydrolytic sol–gel
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 79
year: '2016'
...
---
_id: '7295'
abstract:
- lang: eng
  text: Redox ionic liquids consisting of ions bearing redox moieties are receiving
    increasing interest in electrochemical applications, as they associate electroactive
    properties with the classical properties of ionic liquids. Here, biredox ionic
    liquid electrolytes are described in which both anion and cation are functionalized
    with anthraquinone and 2,2,6,6-tetramethylpiperidinyl-1-oxyl (TEMPO) groups, respectively.
    In-depth investigations based on crossed experimental and theoretical studies
    were carried out to elucidate how the bulkiness of ions bearing a redox moiety
    impacted electron and mass transfers, and accordingly the efficiency of electrochemical
    devices. The values of solvated radii of different redox ions, as well as the
    related kinetic constants, were extracted from cyclic voltammetry experiments.
    Reformulating the basic relations of electron transfer theory (based on Marcus-Hush
    theory) evidenced that in such redox species, with an unsymmetrical located redox
    centre, the electron transfer was not governed by the overall size of the solvated
    redox species, but rather by the radius of the redox active subunit, which takes
    preferential orientation towards the surface, thus allowing higher kinetic constants
    than what classical theory would predict. This vision opens ample opportunities
    for biredox ILs as electrolytes in electrochemical devices.
article_processing_charge: No
article_type: original
author:
- first_name: Eléonore
  full_name: Mourad, Eléonore
  last_name: Mourad
- first_name: Laura
  full_name: Coustan, Laura
  last_name: Coustan
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Ahmad
  full_name: Mehdi, Ahmad
  last_name: Mehdi
- first_name: André
  full_name: Vioux, André
  last_name: Vioux
- first_name: Frédérique
  full_name: Favier, Frédérique
  last_name: Favier
- first_name: Olivier
  full_name: Fontaine, Olivier
  last_name: Fontaine
citation:
  ama: 'Mourad E, Coustan L, Freunberger SA, et al. Biredox ionic liquids: Electrochemical
    investigation and impact of ion size on electron transfer. <i>Electrochimica Acta</i>.
    2016;206(7):513-523. doi:<a href="https://doi.org/10.1016/j.electacta.2016.02.211">10.1016/j.electacta.2016.02.211</a>'
  apa: 'Mourad, E., Coustan, L., Freunberger, S. A., Mehdi, A., Vioux, A., Favier,
    F., &#38; Fontaine, O. (2016). Biredox ionic liquids: Electrochemical investigation
    and impact of ion size on electron transfer. <i>Electrochimica Acta</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.electacta.2016.02.211">https://doi.org/10.1016/j.electacta.2016.02.211</a>'
  chicago: 'Mourad, Eléonore, Laura Coustan, Stefan Alexander Freunberger, Ahmad Mehdi,
    André Vioux, Frédérique Favier, and Olivier Fontaine. “Biredox Ionic Liquids:
    Electrochemical Investigation and Impact of Ion Size on Electron Transfer.” <i>Electrochimica
    Acta</i>. Elsevier, 2016. <a href="https://doi.org/10.1016/j.electacta.2016.02.211">https://doi.org/10.1016/j.electacta.2016.02.211</a>.'
  ieee: 'E. Mourad <i>et al.</i>, “Biredox ionic liquids: Electrochemical investigation
    and impact of ion size on electron transfer,” <i>Electrochimica Acta</i>, vol.
    206, no. 7. Elsevier, pp. 513–523, 2016.'
  ista: 'Mourad E, Coustan L, Freunberger SA, Mehdi A, Vioux A, Favier F, Fontaine
    O. 2016. Biredox ionic liquids: Electrochemical investigation and impact of ion
    size on electron transfer. Electrochimica Acta. 206(7), 513–523.'
  mla: 'Mourad, Eléonore, et al. “Biredox Ionic Liquids: Electrochemical Investigation
    and Impact of Ion Size on Electron Transfer.” <i>Electrochimica Acta</i>, vol.
    206, no. 7, Elsevier, 2016, pp. 513–23, doi:<a href="https://doi.org/10.1016/j.electacta.2016.02.211">10.1016/j.electacta.2016.02.211</a>.'
  short: E. Mourad, L. Coustan, S.A. Freunberger, A. Mehdi, A. Vioux, F. Favier, O.
    Fontaine, Electrochimica Acta 206 (2016) 513–523.
date_created: 2020-01-15T12:16:17Z
date_published: 2016-07-10T00:00:00Z
date_updated: 2021-01-12T08:12:50Z
day: '10'
doi: 10.1016/j.electacta.2016.02.211
extern: '1'
intvolume: '       206'
issue: '7'
language:
- iso: eng
month: '07'
oa_version: None
page: 513-523
publication: Electrochimica Acta
publication_identifier:
  issn:
  - 0013-4686
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Biredox ionic liquids: Electrochemical investigation and impact of ion size
  on electron transfer'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 206
year: '2016'
...
---
OA_place: publisher
OA_type: gold
_id: '7296'
abstract:
- lang: eng
  text: Within the scope of developing a multi-physical model describing battery behavior
    during and after the mechanical load (accelerations, intrusions) of a vehicle’s
    high voltage battery, an internal short circuit model is of deep interest for
    a virtual hazard assessment. The internal short resistance and the size of the
    affected area must be known as a minimum for determining the released heat and,
    in consequence, the temperatures. The internal short resistance of purpose-built
    dummy pouch cells, filled with electrolyte-like solvent without conductive salt,
    has thus been measured in a given short area under various compressive loads.
    The resistances for different short scenarios obtained are analyzed and described
    in a mathematical form. Short circuit experiments with dummy cells using an external
    power source have also been carried out. This set-up allows the measurement of
    the temperature evolution at a known current and a determination of the actual
    short resistance. The post-mortem analysis of the samples shows a correlation
    between the maximum temperatures, released short heat and the separator melt diameter.
article_number: '8'
article_processing_charge: Yes
article_type: original
author:
- first_name: Theo
  full_name: Volck, Theo
  last_name: Volck
- first_name: Wolfgang
  full_name: Sinz, Wolfgang
  last_name: Sinz
- first_name: Gregor
  full_name: Gstrein, Gregor
  last_name: Gstrein
- first_name: Christoph
  full_name: Breitfuss, Christoph
  last_name: Breitfuss
- first_name: Simon
  full_name: Heindl, Simon
  last_name: Heindl
- first_name: Hermann
  full_name: Steffan, Hermann
  last_name: Steffan
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Martin
  full_name: Wilkening, Martin
  last_name: Wilkening
- first_name: Marlena
  full_name: Uitz, Marlena
  last_name: Uitz
- first_name: Clemens
  full_name: Fink, Clemens
  last_name: Fink
- first_name: Alexander
  full_name: Geier, Alexander
  last_name: Geier
citation:
  ama: Volck T, Sinz W, Gstrein G, et al. Method for determination of the internal
    short resistance and heat evolution at different mechanical loads of a Lithium
    ion battery cell based on dummy pouch cells. <i>Batteries</i>. 2016;2(2). doi:<a
    href="https://doi.org/10.3390/batteries2020008">10.3390/batteries2020008</a>
  apa: Volck, T., Sinz, W., Gstrein, G., Breitfuss, C., Heindl, S., Steffan, H., …
    Geier, A. (2016). Method for determination of the internal short resistance and
    heat evolution at different mechanical loads of a Lithium ion battery cell based
    on dummy pouch cells. <i>Batteries</i>. MDPI AG. <a href="https://doi.org/10.3390/batteries2020008">https://doi.org/10.3390/batteries2020008</a>
  chicago: Volck, Theo, Wolfgang Sinz, Gregor Gstrein, Christoph Breitfuss, Simon
    Heindl, Hermann Steffan, Stefan Alexander Freunberger, et al. “Method for Determination
    of the Internal Short Resistance and Heat Evolution at Different Mechanical Loads
    of a Lithium Ion Battery Cell Based on Dummy Pouch Cells.” <i>Batteries</i>. MDPI
    AG, 2016. <a href="https://doi.org/10.3390/batteries2020008">https://doi.org/10.3390/batteries2020008</a>.
  ieee: T. Volck <i>et al.</i>, “Method for determination of the internal short resistance
    and heat evolution at different mechanical loads of a Lithium ion battery cell
    based on dummy pouch cells,” <i>Batteries</i>, vol. 2, no. 2. MDPI AG, 2016.
  ista: Volck T, Sinz W, Gstrein G, Breitfuss C, Heindl S, Steffan H, Freunberger
    SA, Wilkening M, Uitz M, Fink C, Geier A. 2016. Method for determination of the
    internal short resistance and heat evolution at different mechanical loads of
    a Lithium ion battery cell based on dummy pouch cells. Batteries. 2(2), 8.
  mla: Volck, Theo, et al. “Method for Determination of the Internal Short Resistance
    and Heat Evolution at Different Mechanical Loads of a Lithium Ion Battery Cell
    Based on Dummy Pouch Cells.” <i>Batteries</i>, vol. 2, no. 2, 8, MDPI AG, 2016,
    doi:<a href="https://doi.org/10.3390/batteries2020008">10.3390/batteries2020008</a>.
  short: T. Volck, W. Sinz, G. Gstrein, C. Breitfuss, S. Heindl, H. Steffan, S.A.
    Freunberger, M. Wilkening, M. Uitz, C. Fink, A. Geier, Batteries 2 (2016).
date_created: 2020-01-15T12:16:31Z
date_published: 2016-04-07T00:00:00Z
date_updated: 2025-05-20T06:19:52Z
day: '07'
ddc:
- '540'
doi: 10.3390/batteries2020008
extern: '1'
intvolume: '         2'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3390/batteries2020008
month: '04'
oa: 1
oa_version: Published Version
publication: Batteries
publication_identifier:
  issn:
  - 2313-0105
publication_status: published
publisher: MDPI AG
quality_controlled: '1'
status: public
title: Method for determination of the internal short resistance and heat evolution
  at different mechanical loads of a Lithium ion battery cell based on dummy pouch
  cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2016'
...
---
_id: '7297'
abstract:
- lang: eng
  text: Redox mediators facilitate the oxidation of the highly insulating discharge
    product in metal–oxygen batteries during recharge and offer opportunities to achieve
    high reversible capacities. Now a design principle for selecting redox mediators
    that can recharge the batteries more efficiently is suggested.
article_number: '16074'
article_processing_charge: No
article_type: original
author:
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: 'Freunberger SA. Batteries: Charging ahead rationally. <i>Nature Energy</i>.
    2016;1(6). doi:<a href="https://doi.org/10.1038/nenergy.2016.74">10.1038/nenergy.2016.74</a>'
  apa: 'Freunberger, S. A. (2016). Batteries: Charging ahead rationally. <i>Nature
    Energy</i>. Springer Nature. <a href="https://doi.org/10.1038/nenergy.2016.74">https://doi.org/10.1038/nenergy.2016.74</a>'
  chicago: 'Freunberger, Stefan Alexander. “Batteries: Charging Ahead Rationally.”
    <i>Nature Energy</i>. Springer Nature, 2016. <a href="https://doi.org/10.1038/nenergy.2016.74">https://doi.org/10.1038/nenergy.2016.74</a>.'
  ieee: 'S. A. Freunberger, “Batteries: Charging ahead rationally,” <i>Nature Energy</i>,
    vol. 1, no. 6. Springer Nature, 2016.'
  ista: 'Freunberger SA. 2016. Batteries: Charging ahead rationally. Nature Energy.
    1(6), 16074.'
  mla: 'Freunberger, Stefan Alexander. “Batteries: Charging Ahead Rationally.” <i>Nature
    Energy</i>, vol. 1, no. 6, 16074, Springer Nature, 2016, doi:<a href="https://doi.org/10.1038/nenergy.2016.74">10.1038/nenergy.2016.74</a>.'
  short: S.A. Freunberger, Nature Energy 1 (2016).
date_created: 2020-01-15T12:16:40Z
date_published: 2016-05-23T00:00:00Z
date_updated: 2021-01-12T08:12:51Z
day: '23'
ddc:
- '540'
- '541'
- '547'
- '546'
doi: 10.1038/nenergy.2016.74
extern: '1'
file:
- access_level: open_access
  checksum: d90d675947262f7437b483b251918df2
  content_type: application/pdf
  creator: sfreunbe
  date_created: 2020-06-29T13:41:56Z
  date_updated: 2020-07-14T12:47:55Z
  file_id: '8047'
  file_name: N&V Freunberger final.pdf
  file_size: 197375
  relation: main_file
file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: '         1'
issue: '6'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
publication: Nature Energy
publication_identifier:
  issn:
  - 2058-7546
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: 'Batteries: Charging ahead rationally'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2016'
...
---
_id: '7298'
abstract:
- lang: eng
  text: Lithium-ion batteries are in widespread use in electric vehicles and hybrid
    vehicles. Besides features like energy density, cost, lifetime, and recyclability
    the safety of a battery system is of prime importance. The separator material
    impacts all these properties and requires therefore an informed selection. The
    interplay between the mechanical and electrochemical properties as key selection
    criteria is investigated. Mechanical properties were investigated using tensile
    and puncture penetration tests at abuse relevant conditions. To investigate the
    electrochemical performance in terms of effective conductivity a method based
    on impedance spectroscopy was introduced. This methodology is applied to evaluate
    ten commercial separators which allows for a trade-off analysis of mechanical
    versus electrochemical performance. Based on the results, and in combination with
    other factors, this offers an effective approach to select suitable separators
    for automotive applications.
article_processing_charge: No
article_type: original
author:
- first_name: Martin
  full_name: Plaimer, Martin
  last_name: Plaimer
- first_name: Christoph
  full_name: Breitfuß, Christoph
  last_name: Breitfuß
- first_name: Wolfgang
  full_name: Sinz, Wolfgang
  last_name: Sinz
- first_name: Simon F.
  full_name: Heindl, Simon F.
  last_name: Heindl
- first_name: Christian
  full_name: Ellersdorfer, Christian
  last_name: Ellersdorfer
- first_name: Hermann
  full_name: Steffan, Hermann
  last_name: Steffan
- first_name: Martin
  full_name: Wilkening, Martin
  last_name: Wilkening
- first_name: Volker
  full_name: Hennige, Volker
  last_name: Hennige
- first_name: Reinhard
  full_name: Tatschl, Reinhard
  last_name: Tatschl
- first_name: Alexander
  full_name: Geier, Alexander
  last_name: Geier
- first_name: Christian
  full_name: Schramm, Christian
  last_name: Schramm
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: 'Plaimer M, Breitfuß C, Sinz W, et al. Evaluating the trade-off between mechanical
    and electrochemical performance of separators for lithium-ion batteries: Methodology
    and application. <i>Journal of Power Sources</i>. 2016;306(2):702-710. doi:<a
    href="https://doi.org/10.1016/j.jpowsour.2015.12.047">10.1016/j.jpowsour.2015.12.047</a>'
  apa: 'Plaimer, M., Breitfuß, C., Sinz, W., Heindl, S. F., Ellersdorfer, C., Steffan,
    H., … Freunberger, S. A. (2016). Evaluating the trade-off between mechanical and
    electrochemical performance of separators for lithium-ion batteries: Methodology
    and application. <i>Journal of Power Sources</i>. Elsevier. <a href="https://doi.org/10.1016/j.jpowsour.2015.12.047">https://doi.org/10.1016/j.jpowsour.2015.12.047</a>'
  chicago: 'Plaimer, Martin, Christoph Breitfuß, Wolfgang Sinz, Simon F. Heindl, Christian
    Ellersdorfer, Hermann Steffan, Martin Wilkening, et al. “Evaluating the Trade-off
    between Mechanical and Electrochemical Performance of Separators for Lithium-Ion
    Batteries: Methodology and Application.” <i>Journal of Power Sources</i>. Elsevier,
    2016. <a href="https://doi.org/10.1016/j.jpowsour.2015.12.047">https://doi.org/10.1016/j.jpowsour.2015.12.047</a>.'
  ieee: 'M. Plaimer <i>et al.</i>, “Evaluating the trade-off between mechanical and
    electrochemical performance of separators for lithium-ion batteries: Methodology
    and application,” <i>Journal of Power Sources</i>, vol. 306, no. 2. Elsevier,
    pp. 702–710, 2016.'
  ista: 'Plaimer M, Breitfuß C, Sinz W, Heindl SF, Ellersdorfer C, Steffan H, Wilkening
    M, Hennige V, Tatschl R, Geier A, Schramm C, Freunberger SA. 2016. Evaluating
    the trade-off between mechanical and electrochemical performance of separators
    for lithium-ion batteries: Methodology and application. Journal of Power Sources.
    306(2), 702–710.'
  mla: 'Plaimer, Martin, et al. “Evaluating the Trade-off between Mechanical and Electrochemical
    Performance of Separators for Lithium-Ion Batteries: Methodology and Application.”
    <i>Journal of Power Sources</i>, vol. 306, no. 2, Elsevier, 2016, pp. 702–10,
    doi:<a href="https://doi.org/10.1016/j.jpowsour.2015.12.047">10.1016/j.jpowsour.2015.12.047</a>.'
  short: M. Plaimer, C. Breitfuß, W. Sinz, S.F. Heindl, C. Ellersdorfer, H. Steffan,
    M. Wilkening, V. Hennige, R. Tatschl, A. Geier, C. Schramm, S.A. Freunberger,
    Journal of Power Sources 306 (2016) 702–710.
date_created: 2020-01-15T12:16:51Z
date_published: 2016-02-29T00:00:00Z
date_updated: 2021-01-12T08:12:51Z
day: '29'
doi: 10.1016/j.jpowsour.2015.12.047
extern: '1'
intvolume: '       306'
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
page: 702-710
publication: Journal of Power Sources
publication_identifier:
  issn:
  - 0378-7753
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Evaluating the trade-off between mechanical and electrochemical performance
  of separators for lithium-ion batteries: Methodology and application'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 306
year: '2016'
...
---
_id: '7599'
abstract:
- lang: eng
  text: Normal leaf margin development is important for leaf morphogenesis and contributes
    to diverse leaf shapes in higher plants. We here show the crucial roles of an
    atypical type II phosphatidylinositol 4-kinase, PI4Kγ5, in Arabidopsis leaf margin
    development. PI4Kγ5 presents a dynamics expression pattern along with leaf development
    and a T-DNA mutant lacking PI4Kγ5, pi4kγ5–1, presents serrated leaves, which is
    resulted from the accelerated cell division and increased auxin concentration
    at serration tips. Studies revealed that PI4Kγ5 interacts with and phosphorylates
    a membrane-bound NAC transcription factor, ANAC078. Previous studies demonstrated
    that membrane-bound transcription factors regulate gene transcription by undergoing
    proteolytic process to translocate into nucleus, and ANAC078 undergoes proteolysis
    by cleaving off the transmembrane region and carboxyl terminal. Western blot analysis
    indeed showed that ANAC078 deleting of carboxyl terminal is significantly reduced
    in pi4kγ5–1, indicating that PI4Kγ5 is important for the cleavage of ANAC078.
    This is consistent with the subcellular localization observation showing that
    fluorescence by GFP-ANAC078 is detected at plasma membrane but not nucleus in
    pi4kγ5–1 mutant and that expression of ANAC078 deleting of carboxyl terminal,
    driven by PI4Kγ5 promoter, could rescue the leaf serration defects of pi4kγ5–1.
    Further analysis showed that ANAC078 suppresses the auxin synthesis by directly
    binding and regulating the expression of auxin synthesis-related genes. These
    results indicate that PI4Kγ5 interacts with ANAC078 to negatively regulate auxin
    synthesis and hence influences cell proliferation and leaf development, providing
    informative clues for the regulation of in situ auxin synthesis and cell division,
    as well as the cleavage and functional mechanism of membrane-bound transcription
    factors.
article_number: e1006252
article_processing_charge: No
article_type: original
author:
- first_name: Yong
  full_name: Tang, Yong
  last_name: Tang
- first_name: Chun-Yan
  full_name: Zhao, Chun-Yan
  last_name: Zhao
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Hong-Wei
  full_name: Xue, Hong-Wei
  last_name: Xue
citation:
  ama: Tang Y, Zhao C-Y, Tan S, Xue H-W. Arabidopsis type II phosphatidylinositol
    4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through
    interacting with membrane-bound transcription factor ANAC078. <i>PLOS Genetics</i>.
    2016;12(8). doi:<a href="https://doi.org/10.1371/journal.pgen.1006252">10.1371/journal.pgen.1006252</a>
  apa: Tang, Y., Zhao, C.-Y., Tan, S., &#38; Xue, H.-W. (2016). Arabidopsis type II
    phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin
    development through interacting with membrane-bound transcription factor ANAC078.
    <i>PLOS Genetics</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1006252">https://doi.org/10.1371/journal.pgen.1006252</a>
  chicago: Tang, Yong, Chun-Yan Zhao, Shutang Tan, and Hong-Wei Xue. “Arabidopsis
    Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and
    Leaf Margin Development through Interacting with Membrane-Bound Transcription
    Factor ANAC078.” <i>PLOS Genetics</i>. Public Library of Science, 2016. <a href="https://doi.org/10.1371/journal.pgen.1006252">https://doi.org/10.1371/journal.pgen.1006252</a>.
  ieee: Y. Tang, C.-Y. Zhao, S. Tan, and H.-W. Xue, “Arabidopsis type II phosphatidylinositol
    4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through
    interacting with membrane-bound transcription factor ANAC078,” <i>PLOS Genetics</i>,
    vol. 12, no. 8. Public Library of Science, 2016.
  ista: Tang Y, Zhao C-Y, Tan S, Xue H-W. 2016. Arabidopsis type II phosphatidylinositol
    4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through
    interacting with membrane-bound transcription factor ANAC078. PLOS Genetics. 12(8),
    e1006252.
  mla: Tang, Yong, et al. “Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5
    Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with
    Membrane-Bound Transcription Factor ANAC078.” <i>PLOS Genetics</i>, vol. 12, no.
    8, e1006252, Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pgen.1006252">10.1371/journal.pgen.1006252</a>.
  short: Y. Tang, C.-Y. Zhao, S. Tan, H.-W. Xue, PLOS Genetics 12 (2016).
date_created: 2020-03-21T16:08:33Z
date_published: 2016-08-16T00:00:00Z
date_updated: 2021-01-12T08:14:25Z
day: '16'
ddc:
- '580'
doi: 10.1371/journal.pgen.1006252
extern: '1'
file:
- access_level: open_access
  checksum: ff0ab9a6bed11cda800a6e59820866a0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-23T12:15:31Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7612'
  file_name: 2016_PlosGenetics_Tang.PDF
  file_size: 3266119
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        12'
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: PLOS Genetics
publication_identifier:
  issn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: Arabidopsis type II phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis
  and leaf margin development through interacting with membrane-bound transcription
  factor ANAC078
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2016'
...
---
_id: '9862'
article_processing_charge: No
author:
- first_name: Camille
  full_name: Roux, Camille
  last_name: Roux
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: Jonathan
  full_name: Romiguier, Jonathan
  last_name: Romiguier
- first_name: Youann
  full_name: Anciaux, Youann
  last_name: Anciaux
- first_name: Nicolas
  full_name: Galtier, Nicolas
  last_name: Galtier
- first_name: Nicolas
  full_name: Bierne, Nicolas
  last_name: Bierne
citation:
  ama: Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. Simulation
    study to test the robustness of ABC in face of recent times of divergence. 2016.
    doi:<a href="https://doi.org/10.1371/journal.pbio.2000234.s016">10.1371/journal.pbio.2000234.s016</a>
  apa: Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., &#38; Bierne,
    N. (2016). Simulation study to test the robustness of ABC in face of recent times
    of divergence. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.2000234.s016">https://doi.org/10.1371/journal.pbio.2000234.s016</a>
  chicago: Roux, Camille, Christelle Fraisse, Jonathan Romiguier, Youann Anciaux,
    Nicolas Galtier, and Nicolas Bierne. “Simulation Study to Test the Robustness
    of ABC in Face of Recent Times of Divergence.” Public Library of Science, 2016.
    <a href="https://doi.org/10.1371/journal.pbio.2000234.s016">https://doi.org/10.1371/journal.pbio.2000234.s016</a>.
  ieee: C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, and N. Bierne,
    “Simulation study to test the robustness of ABC in face of recent times of divergence.”
    Public Library of Science, 2016.
  ista: Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. 2016. Simulation
    study to test the robustness of ABC in face of recent times of divergence, Public
    Library of Science, <a href="https://doi.org/10.1371/journal.pbio.2000234.s016">10.1371/journal.pbio.2000234.s016</a>.
  mla: Roux, Camille, et al. <i>Simulation Study to Test the Robustness of ABC in
    Face of Recent Times of Divergence</i>. Public Library of Science, 2016, doi:<a
    href="https://doi.org/10.1371/journal.pbio.2000234.s016">10.1371/journal.pbio.2000234.s016</a>.
  short: C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
date_created: 2021-08-10T08:20:17Z
date_updated: 2025-09-22T09:55:08Z
day: '27'
department:
- _id: BeVi
- _id: NiBa
doi: 10.1371/journal.pbio.2000234.s016
month: '12'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1158'
    relation: used_in_publication
    status: public
status: public
title: Simulation study to test the robustness of ABC in face of recent times of divergence
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9863'
article_processing_charge: No
author:
- first_name: Camille
  full_name: Roux, Camille
  last_name: Roux
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: Jonathan
  full_name: Romiguier, Jonathan
  last_name: Romiguier
- first_name: Youann
  full_name: Anciaux, Youann
  last_name: Anciaux
- first_name: Nicolas
  full_name: Galtier, Nicolas
  last_name: Galtier
- first_name: Nicolas
  full_name: Bierne, Nicolas
  last_name: Bierne
citation:
  ama: Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. Accessions
    of surveyed individuals, geographic locations and summary statistics. 2016. doi:<a
    href="https://doi.org/10.1371/journal.pbio.2000234.s017">10.1371/journal.pbio.2000234.s017</a>
  apa: Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., &#38; Bierne,
    N. (2016). Accessions of surveyed individuals, geographic locations and summary
    statistics. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.2000234.s017">https://doi.org/10.1371/journal.pbio.2000234.s017</a>
  chicago: Roux, Camille, Christelle Fraisse, Jonathan Romiguier, Youann Anciaux,
    Nicolas Galtier, and Nicolas Bierne. “Accessions of Surveyed Individuals, Geographic
    Locations and Summary Statistics.” Public Library of Science, 2016. <a href="https://doi.org/10.1371/journal.pbio.2000234.s017">https://doi.org/10.1371/journal.pbio.2000234.s017</a>.
  ieee: C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, and N. Bierne,
    “Accessions of surveyed individuals, geographic locations and summary statistics.”
    Public Library of Science, 2016.
  ista: Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. 2016. Accessions
    of surveyed individuals, geographic locations and summary statistics, Public Library
    of Science, <a href="https://doi.org/10.1371/journal.pbio.2000234.s017">10.1371/journal.pbio.2000234.s017</a>.
  mla: Roux, Camille, et al. <i>Accessions of Surveyed Individuals, Geographic Locations
    and Summary Statistics</i>. Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pbio.2000234.s017">10.1371/journal.pbio.2000234.s017</a>.
  short: C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
date_created: 2021-08-10T08:22:52Z
date_updated: 2025-09-22T09:55:09Z
day: '27'
department:
- _id: BeVi
- _id: NiBa
doi: 10.1371/journal.pbio.2000234.s017
month: '12'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1158'
    relation: used_in_publication
    status: public
status: public
title: Accessions of surveyed individuals, geographic locations and summary statistics
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9864'
abstract:
- lang: eng
  text: Viral capsids are structurally constrained by interactions among the amino
    acids (AAs) of their constituent proteins. Therefore, epistasis is expected to
    evolve among physically interacting sites and to influence the rates of substitution.
    To study the evolution of epistasis, we focused on the major structural protein
    of the ϕX174 phage family by, first, reconstructing the ancestral protein sequences
    of 18 species using a Bayesian statistical framework. The inferred ancestral reconstruction
    differed at eight AAs, for a total of 256 possible ancestral haplotypes. For each
    ancestral haplotype and the extant species, we estimated, in silico, the distribution
    of free energies and epistasis of the capsid structure. We found that free energy
    has not significantly increased but epistasis has. We decomposed epistasis up
    to fifth order and found that higher-order epistasis sometimes compensates pairwise
    interactions making the free energy seem additive. The dN/dS ratio is low, suggesting
    strong purifying selection, and that structure is under stabilizing selection.
    We synthesized phages carrying ancestral haplotypes of the coat protein gene and
    measured their fitness experimentally. Our findings indicate that stabilizing
    mutations can have higher fitness, and that fitness optima do not necessarily
    coincide with energy minima.
article_processing_charge: No
author:
- first_name: Rodrigo A
  full_name: Fernandes Redondo, Rodrigo A
  id: 409D5C96-F248-11E8-B48F-1D18A9856A87
  last_name: Fernandes Redondo
  orcid: 0000-0002-5837-2793
- first_name: Harold
  full_name: de Vladar, Harold
  id: 2A181218-F248-11E8-B48F-1D18A9856A87
  last_name: de Vladar
  orcid: 0000-0002-5985-7653
- first_name: Tomasz
  full_name: Włodarski, Tomasz
  last_name: Włodarski
- first_name: Jonathan P
  full_name: Bollback, Jonathan P
  id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
  last_name: Bollback
  orcid: 0000-0002-4624-4612
citation:
  ama: Fernandes Redondo RA, de Vladar H, Włodarski T, Bollback JP. Data from evolutionary
    interplay between structure, energy and epistasis in the coat protein of the ϕX174
    phage family. 2016. doi:<a href="https://doi.org/10.6084/m9.figshare.4315652.v1">10.6084/m9.figshare.4315652.v1</a>
  apa: Fernandes Redondo, R. A., de Vladar, H., Włodarski, T., &#38; Bollback, J.
    P. (2016). Data from evolutionary interplay between structure, energy and epistasis
    in the coat protein of the ϕX174 phage family. The Royal Society. <a href="https://doi.org/10.6084/m9.figshare.4315652.v1">https://doi.org/10.6084/m9.figshare.4315652.v1</a>
  chicago: Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Włodarski, and Jonathan
    P Bollback. “Data from Evolutionary Interplay between Structure, Energy and Epistasis
    in the Coat Protein of the ΦX174 Phage Family.” The Royal Society, 2016. <a href="https://doi.org/10.6084/m9.figshare.4315652.v1">https://doi.org/10.6084/m9.figshare.4315652.v1</a>.
  ieee: R. A. Fernandes Redondo, H. de Vladar, T. Włodarski, and J. P. Bollback, “Data
    from evolutionary interplay between structure, energy and epistasis in the coat
    protein of the ϕX174 phage family.” The Royal Society, 2016.
  ista: Fernandes Redondo RA, de Vladar H, Włodarski T, Bollback JP. 2016. Data from
    evolutionary interplay between structure, energy and epistasis in the coat protein
    of the ϕX174 phage family, The Royal Society, <a href="https://doi.org/10.6084/m9.figshare.4315652.v1">10.6084/m9.figshare.4315652.v1</a>.
  mla: Fernandes Redondo, Rodrigo A., et al. <i>Data from Evolutionary Interplay between
    Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family</i>.
    The Royal Society, 2016, doi:<a href="https://doi.org/10.6084/m9.figshare.4315652.v1">10.6084/m9.figshare.4315652.v1</a>.
  short: R.A. Fernandes Redondo, H. de Vladar, T. Włodarski, J.P. Bollback, (2016).
date_created: 2021-08-10T08:29:47Z
date_published: 2016-12-14T00:00:00Z
date_updated: 2025-07-10T11:49:59Z
day: '14'
department:
- _id: NiBa
- _id: JoBo
doi: 10.6084/m9.figshare.4315652.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.4315652.v1
month: '12'
oa: 1
oa_version: Published Version
publisher: The Royal Society
related_material:
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  - id: '1077'
    relation: used_in_publication
    status: public
status: public
title: Data from evolutionary interplay between structure, energy and epistasis in
  the coat protein of the ϕX174 phage family
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9866'
article_processing_charge: No
author:
- first_name: Marcin P
  full_name: Zagórski, Marcin P
  id: 343DA0DC-F248-11E8-B48F-1D18A9856A87
  last_name: Zagórski
  orcid: 0000-0001-7896-7762
- first_name: Zdzisław
  full_name: Burda, Zdzisław
  last_name: Burda
- first_name: Bartłomiej
  full_name: Wacław, Bartłomiej
  last_name: Wacław
citation:
  ama: Zagórski MP, Burda Z, Wacław B. ZIP-archived directory containing all data
    and computer programs. 2016. doi:<a href="https://doi.org/10.1371/journal.pcbi.1005218.s009">10.1371/journal.pcbi.1005218.s009</a>
  apa: Zagórski, M. P., Burda, Z., &#38; Wacław, B. (2016). ZIP-archived directory
    containing all data and computer programs. Public Library of Science. <a href="https://doi.org/10.1371/journal.pcbi.1005218.s009">https://doi.org/10.1371/journal.pcbi.1005218.s009</a>
  chicago: Zagórski, Marcin P, Zdzisław Burda, and Bartłomiej Wacław. “ZIP-Archived
    Directory Containing All Data and Computer Programs.” Public Library of Science,
    2016. <a href="https://doi.org/10.1371/journal.pcbi.1005218.s009">https://doi.org/10.1371/journal.pcbi.1005218.s009</a>.
  ieee: M. P. Zagórski, Z. Burda, and B. Wacław, “ZIP-archived directory containing
    all data and computer programs.” Public Library of Science, 2016.
  ista: Zagórski MP, Burda Z, Wacław B. 2016. ZIP-archived directory containing all
    data and computer programs, Public Library of Science, <a href="https://doi.org/10.1371/journal.pcbi.1005218.s009">10.1371/journal.pcbi.1005218.s009</a>.
  mla: Zagórski, Marcin P., et al. <i>ZIP-Archived Directory Containing All Data and
    Computer Programs</i>. Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pcbi.1005218.s009">10.1371/journal.pcbi.1005218.s009</a>.
  short: M.P. Zagórski, Z. Burda, B. Wacław, (2016).
date_created: 2021-08-10T08:37:20Z
date_published: 2016-12-09T00:00:00Z
date_updated: 2025-09-22T09:53:16Z
day: '09'
department:
- _id: AnKi
doi: 10.1371/journal.pcbi.1005218.s009
month: '12'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1167'
    relation: used_in_publication
    status: public
status: public
title: ZIP-archived directory containing all data and computer programs
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9867'
abstract:
- lang: eng
  text: In the beginning of our experiment, subjects were asked to read a few pages
    on their computer screens that would explain the rules of the subsequent game.
    Here, we provide these instructions, translated from German.
article_processing_charge: No
author:
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: Kristin
  full_name: Hagel, Kristin
  last_name: Hagel
- first_name: Manfred
  full_name: Milinski, Manfred
  last_name: Milinski
citation:
  ama: Hilbe C, Hagel K, Milinski M. Experimental game instructions. 2016. doi:<a
    href="https://doi.org/10.1371/journal.pone.0163867.s008">10.1371/journal.pone.0163867.s008</a>
  apa: Hilbe, C., Hagel, K., &#38; Milinski, M. (2016). Experimental game instructions.
    Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0163867.s008">https://doi.org/10.1371/journal.pone.0163867.s008</a>
  chicago: Hilbe, Christian, Kristin Hagel, and Manfred Milinski. “Experimental Game
    Instructions.” Public Library of Science, 2016. <a href="https://doi.org/10.1371/journal.pone.0163867.s008">https://doi.org/10.1371/journal.pone.0163867.s008</a>.
  ieee: C. Hilbe, K. Hagel, and M. Milinski, “Experimental game instructions.” Public
    Library of Science, 2016.
  ista: Hilbe C, Hagel K, Milinski M. 2016. Experimental game instructions, Public
    Library of Science, <a href="https://doi.org/10.1371/journal.pone.0163867.s008">10.1371/journal.pone.0163867.s008</a>.
  mla: Hilbe, Christian, et al. <i>Experimental Game Instructions</i>. Public Library
    of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pone.0163867.s008">10.1371/journal.pone.0163867.s008</a>.
  short: C. Hilbe, K. Hagel, M. Milinski, (2016).
date_created: 2021-08-10T08:42:00Z
date_updated: 2025-09-22T08:27:00Z
day: '04'
department:
- _id: KrCh
doi: 10.1371/journal.pone.0163867.s008
month: '10'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1322'
    relation: used_in_publication
    status: public
status: public
title: Experimental game instructions
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9868'
abstract:
- lang: eng
  text: The raw data file containing the experimental decisions of all our study subjects.
article_processing_charge: No
author:
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: Kristin
  full_name: Hagel, Kristin
  last_name: Hagel
- first_name: Manfred
  full_name: Milinski, Manfred
  last_name: Milinski
citation:
  ama: Hilbe C, Hagel K, Milinski M. Experimental data. 2016. doi:<a href="https://doi.org/10.1371/journal.pone.0163867.s009">10.1371/journal.pone.0163867.s009</a>
  apa: Hilbe, C., Hagel, K., &#38; Milinski, M. (2016). Experimental data. Public
    Library of Science. <a href="https://doi.org/10.1371/journal.pone.0163867.s009">https://doi.org/10.1371/journal.pone.0163867.s009</a>
  chicago: Hilbe, Christian, Kristin Hagel, and Manfred Milinski. “Experimental Data.”
    Public Library of Science, 2016. <a href="https://doi.org/10.1371/journal.pone.0163867.s009">https://doi.org/10.1371/journal.pone.0163867.s009</a>.
  ieee: C. Hilbe, K. Hagel, and M. Milinski, “Experimental data.” Public Library of
    Science, 2016.
  ista: Hilbe C, Hagel K, Milinski M. 2016. Experimental data, Public Library of Science,
    <a href="https://doi.org/10.1371/journal.pone.0163867.s009">10.1371/journal.pone.0163867.s009</a>.
  mla: Hilbe, Christian, et al. <i>Experimental Data</i>. Public Library of Science,
    2016, doi:<a href="https://doi.org/10.1371/journal.pone.0163867.s009">10.1371/journal.pone.0163867.s009</a>.
  short: C. Hilbe, K. Hagel, M. Milinski, (2016).
date_created: 2021-08-10T08:45:00Z
date_published: 2016-10-04T00:00:00Z
date_updated: 2025-09-22T08:27:00Z
day: '04'
department:
- _id: KrCh
doi: 10.1371/journal.pone.0163867.s009
month: '10'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1322'
    relation: used_in_publication
    status: public
status: public
title: Experimental data
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9869'
abstract:
- lang: eng
  text: A lower bound on the error of a positional estimator with limited positional
    information is derived.
article_processing_charge: No
author:
- first_name: Patrick
  full_name: Hillenbrand, Patrick
  last_name: Hillenbrand
- first_name: Ulrich
  full_name: Gerland, Ulrich
  last_name: Gerland
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: Hillenbrand P, Gerland U, Tkačik G. Error bound on an estimator of position.
    2016. doi:<a href="https://doi.org/10.1371/journal.pone.0163628.s001">10.1371/journal.pone.0163628.s001</a>
  apa: Hillenbrand, P., Gerland, U., &#38; Tkačik, G. (2016). Error bound on an estimator
    of position. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0163628.s001">https://doi.org/10.1371/journal.pone.0163628.s001</a>
  chicago: Hillenbrand, Patrick, Ulrich Gerland, and Gašper Tkačik. “Error Bound on
    an Estimator of Position.” Public Library of Science, 2016. <a href="https://doi.org/10.1371/journal.pone.0163628.s001">https://doi.org/10.1371/journal.pone.0163628.s001</a>.
  ieee: P. Hillenbrand, U. Gerland, and G. Tkačik, “Error bound on an estimator of
    position.” Public Library of Science, 2016.
  ista: Hillenbrand P, Gerland U, Tkačik G. 2016. Error bound on an estimator of position,
    Public Library of Science, <a href="https://doi.org/10.1371/journal.pone.0163628.s001">10.1371/journal.pone.0163628.s001</a>.
  mla: Hillenbrand, Patrick, et al. <i>Error Bound on an Estimator of Position</i>.
    Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pone.0163628.s001">10.1371/journal.pone.0163628.s001</a>.
  short: P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
date_created: 2021-08-10T08:53:48Z
date_published: 2016-09-27T00:00:00Z
date_updated: 2025-09-22T08:46:14Z
day: '27'
department:
- _id: GaTk
doi: 10.1371/journal.pone.0163628.s001
month: '09'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1270'
    relation: used_in_publication
    status: public
status: public
title: Error bound on an estimator of position
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9870'
abstract:
- lang: eng
  text: The effect of noise in the input field on an Ising model is approximated.
    Furthermore, methods to compute positional information in an Ising model by transfer
    matrices and Monte Carlo sampling are outlined.
article_processing_charge: No
author:
- first_name: Patrick
  full_name: Hillenbrand, Patrick
  last_name: Hillenbrand
- first_name: Ulrich
  full_name: Gerland, Ulrich
  last_name: Gerland
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: Hillenbrand P, Gerland U, Tkačik G. Computation of positional information in
    an Ising model. 2016. doi:<a href="https://doi.org/10.1371/journal.pone.0163628.s002">10.1371/journal.pone.0163628.s002</a>
  apa: Hillenbrand, P., Gerland, U., &#38; Tkačik, G. (2016). Computation of positional
    information in an Ising model. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0163628.s002">https://doi.org/10.1371/journal.pone.0163628.s002</a>
  chicago: Hillenbrand, Patrick, Ulrich Gerland, and Gašper Tkačik. “Computation of
    Positional Information in an Ising Model.” Public Library of Science, 2016. <a
    href="https://doi.org/10.1371/journal.pone.0163628.s002">https://doi.org/10.1371/journal.pone.0163628.s002</a>.
  ieee: P. Hillenbrand, U. Gerland, and G. Tkačik, “Computation of positional information
    in an Ising model.” Public Library of Science, 2016.
  ista: Hillenbrand P, Gerland U, Tkačik G. 2016. Computation of positional information
    in an Ising model, Public Library of Science, <a href="https://doi.org/10.1371/journal.pone.0163628.s002">10.1371/journal.pone.0163628.s002</a>.
  mla: Hillenbrand, Patrick, et al. <i>Computation of Positional Information in an
    Ising Model</i>. Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pone.0163628.s002">10.1371/journal.pone.0163628.s002</a>.
  short: P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
date_created: 2021-08-10T09:23:45Z
date_published: 2016-09-27T00:00:00Z
date_updated: 2025-09-22T08:46:14Z
day: '27'
department:
- _id: GaTk
doi: 10.1371/journal.pone.0163628.s002
month: '09'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1270'
    relation: used_in_publication
    status: public
status: public
title: Computation of positional information in an Ising model
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9871'
abstract:
- lang: eng
  text: The positional information in a discrete morphogen field with Gaussian noise
    is computed.
article_processing_charge: No
author:
- first_name: Patrick
  full_name: Hillenbrand, Patrick
  last_name: Hillenbrand
- first_name: Ulrich
  full_name: Gerland, Ulrich
  last_name: Gerland
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: Hillenbrand P, Gerland U, Tkačik G. Computation of positional information in
    a discrete morphogen field. 2016. doi:<a href="https://doi.org/10.1371/journal.pone.0163628.s003">10.1371/journal.pone.0163628.s003</a>
  apa: Hillenbrand, P., Gerland, U., &#38; Tkačik, G. (2016). Computation of positional
    information in a discrete morphogen field. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0163628.s003">https://doi.org/10.1371/journal.pone.0163628.s003</a>
  chicago: Hillenbrand, Patrick, Ulrich Gerland, and Gašper Tkačik. “Computation of
    Positional Information in a Discrete Morphogen Field.” Public Library of Science,
    2016. <a href="https://doi.org/10.1371/journal.pone.0163628.s003">https://doi.org/10.1371/journal.pone.0163628.s003</a>.
  ieee: P. Hillenbrand, U. Gerland, and G. Tkačik, “Computation of positional information
    in a discrete morphogen field.” Public Library of Science, 2016.
  ista: Hillenbrand P, Gerland U, Tkačik G. 2016. Computation of positional information
    in a discrete morphogen field, Public Library of Science, <a href="https://doi.org/10.1371/journal.pone.0163628.s003">10.1371/journal.pone.0163628.s003</a>.
  mla: Hillenbrand, Patrick, et al. <i>Computation of Positional Information in a
    Discrete Morphogen Field</i>. Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pone.0163628.s003">10.1371/journal.pone.0163628.s003</a>.
  short: P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
date_created: 2021-08-10T09:27:35Z
date_updated: 2025-09-22T08:46:14Z
day: '27'
department:
- _id: GaTk
doi: 10.1371/journal.pone.0163628.s003
month: '09'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1270'
    relation: used_in_publication
    status: public
status: public
title: Computation of positional information in a discrete morphogen field
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9873'
article_processing_charge: No
author:
- first_name: Alex
  full_name: Boehm, Alex
  last_name: Boehm
- first_name: Markus
  full_name: Arnoldini, Markus
  last_name: Arnoldini
- first_name: Tobias
  full_name: Bergmiller, Tobias
  id: 2C471CFA-F248-11E8-B48F-1D18A9856A87
  last_name: Bergmiller
  orcid: 0000-0001-5396-4346
- first_name: Thomas
  full_name: Röösli, Thomas
  last_name: Röösli
- first_name: Colette
  full_name: Bigosch, Colette
  last_name: Bigosch
- first_name: Martin
  full_name: Ackermann, Martin
  last_name: Ackermann
citation:
  ama: Boehm A, Arnoldini M, Bergmiller T, Röösli T, Bigosch C, Ackermann M. Quantification
    of the growth rate reduction as a consequence of age-specific mortality. 2016.
    doi:<a href="https://doi.org/10.1371/journal.pgen.1005974.s015">10.1371/journal.pgen.1005974.s015</a>
  apa: Boehm, A., Arnoldini, M., Bergmiller, T., Röösli, T., Bigosch, C., &#38; Ackermann,
    M. (2016). Quantification of the growth rate reduction as a consequence of age-specific
    mortality. Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1005974.s015">https://doi.org/10.1371/journal.pgen.1005974.s015</a>
  chicago: Boehm, Alex, Markus Arnoldini, Tobias Bergmiller, Thomas Röösli, Colette
    Bigosch, and Martin Ackermann. “Quantification of the Growth Rate Reduction as
    a Consequence of Age-Specific Mortality.” Public Library of Science, 2016. <a
    href="https://doi.org/10.1371/journal.pgen.1005974.s015">https://doi.org/10.1371/journal.pgen.1005974.s015</a>.
  ieee: A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, and M. Ackermann,
    “Quantification of the growth rate reduction as a consequence of age-specific
    mortality.” Public Library of Science, 2016.
  ista: Boehm A, Arnoldini M, Bergmiller T, Röösli T, Bigosch C, Ackermann M. 2016.
    Quantification of the growth rate reduction as a consequence of age-specific mortality,
    Public Library of Science, <a href="https://doi.org/10.1371/journal.pgen.1005974.s015">10.1371/journal.pgen.1005974.s015</a>.
  mla: Boehm, Alex, et al. <i>Quantification of the Growth Rate Reduction as a Consequence
    of Age-Specific Mortality</i>. Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pgen.1005974.s015">10.1371/journal.pgen.1005974.s015</a>.
  short: A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann,
    (2016).
date_created: 2021-08-10T09:42:34Z
date_updated: 2025-09-22T09:10:03Z
day: '19'
department:
- _id: CaGu
doi: 10.1371/journal.pgen.1005974.s015
month: '04'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1250'
    relation: used_in_publication
    status: public
status: public
title: Quantification of the growth rate reduction as a consequence of age-specific
  mortality
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
OA_type: closed access
_id: '19990'
abstract:
- lang: eng
  text: Visualizing molecular localization at high resolution contributes to understanding
    of their functions and roles in physiological and pathological conditions. Sodium
    dodecyl sulfate-digested freeze-fracture replica labeling (SDS-FRL) is a powerful
    electron microscopy method to study high-resolution two-dimensional distribution
    of transmembrane proteins and their tightly associated proteins on platinum-carbon
    replica. During treatment with SDS, unfixed proteins and intracellular organelle
    are dissolved and integral membrane proteins captured and stabilized by carbon
    and platinum deposition are denatured, retaining most of their antigenicity, and
    exposed on exoplasmic and protoplasmic surfaces of lipid monolayers. The exposure
    of these antigens on the surface of replica facilitates the accessibility of antibodies
    and therefore provides higher labeling efficiency than those obtained with other
    immunoelectron microscopy techniques. In this chapter, we describe the protocols
    of SDS-FRL adapted for mammalian brain samples and an additional procedure for
    fluorescence-guided electron microscopy for replica immunolabeling.
acknowledgement: We thank Mitsuru Ikeda for preparing replica images used in Fig.
  2.
article_processing_charge: No
author:
- first_name: Harumi
  full_name: Harada, Harumi
  id: 2E55CDF2-F248-11E8-B48F-1D18A9856A87
  last_name: Harada
  orcid: 0000-0001-7429-7896
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: 'Harada H, Shigemoto R. High-Resolution Localization of Membrane Proteins by
    SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL). In: <i>Receptor and Ion
    Channel Detection in the Brain</i>. Neuromethods. Springer Nature; 2016:233-245.
    doi:<a href="https://doi.org/10.1007/978-1-4939-3064-7_17">10.1007/978-1-4939-3064-7_17</a>'
  apa: Harada, H., &#38; Shigemoto, R. (2016). High-Resolution Localization of Membrane
    Proteins by SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL). In <i>Receptor
    and Ion Channel Detection in the Brain</i> (pp. 233–245). Springer Nature. <a
    href="https://doi.org/10.1007/978-1-4939-3064-7_17">https://doi.org/10.1007/978-1-4939-3064-7_17</a>
  chicago: Harada, Harumi, and Ryuichi Shigemoto. “High-Resolution Localization of
    Membrane Proteins by SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL).”
    In <i>Receptor and Ion Channel Detection in the Brain</i>, 233–45. Neuromethods.
    Springer Nature, 2016. <a href="https://doi.org/10.1007/978-1-4939-3064-7_17">https://doi.org/10.1007/978-1-4939-3064-7_17</a>.
  ieee: H. Harada and R. Shigemoto, “High-Resolution Localization of Membrane Proteins
    by SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL),” in <i>Receptor and
    Ion Channel Detection in the Brain</i>, Springer Nature, 2016, pp. 233–245.
  ista: 'Harada H, Shigemoto R. 2016.High-Resolution Localization of Membrane Proteins
    by SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL). In: Receptor and Ion
    Channel Detection in the Brain. , 233–245.'
  mla: Harada, Harumi, and Ryuichi Shigemoto. “High-Resolution Localization of Membrane
    Proteins by SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL).” <i>Receptor
    and Ion Channel Detection in the Brain</i>, Springer Nature, 2016, pp. 233–45,
    doi:<a href="https://doi.org/10.1007/978-1-4939-3064-7_17">10.1007/978-1-4939-3064-7_17</a>.
  short: H. Harada, R. Shigemoto, in:, Receptor and Ion Channel Detection in the Brain,
    Springer Nature, 2016, pp. 233–245.
corr_author: '1'
date_created: 2025-07-10T13:56:06Z
date_published: 2016-02-02T00:00:00Z
date_updated: 2026-04-07T08:32:03Z
day: '02'
department:
- _id: RySh
doi: 10.1007/978-1-4939-3064-7_17
language:
- iso: eng
month: '02'
oa_version: None
page: 233-245
publication: Receptor and Ion Channel Detection in the Brain
publication_identifier:
  eisbn:
  - '9781493930647'
  eissn:
  - 1940-6045
  isbn:
  - '9781493930630'
  issn:
  - 0893-2336
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
series_title: Neuromethods
status: public
title: High-Resolution Localization of Membrane Proteins by SDS-Digested Freeze-Fracture
  Replica Labeling (SDS-FRL)
type: book_chapter
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2016'
...
---
_id: '1328'
abstract:
- lang: eng
  text: Hole spins have gained considerable interest in the past few years due to
    their potential for fast electrically controlled qubits. Here, we study holes
    confined in Ge hut wires, a so-far unexplored type of nanostructure. Low-temperature
    magnetotransport measurements reveal a large anisotropy between the in-plane and
    out-of-plane g-factors of up to 18. Numerical simulations verify that this large
    anisotropy originates from a confined wave function of heavy-hole character. A
    light-hole admixture of less than 1% is estimated for the states of lowest energy,
    leading to a surprisingly large reduction of the out-of-plane g-factors compared
    with those for pure heavy holes. Given this tiny light-hole contribution, the
    spin lifetimes are expected to be very long, even in isotopically nonpurified
    samples.
acknowledgement: 'The work was supported by the EC FP7 ICT project SiSPIN no. 323841,
  the EC FP7 ICT project PAMS no. 610446, the ERC Starting Grant no. 335497, the FWF-I-1190-N20
  project, and the Swiss NSF. We acknowledge F. Schäffler for fruitful discussions
  related to the hut wire growth and for giving us access to the molecular beam epitaxy
  system, M. Schatzl for her support in electron beam lithography, and V. Jadris ̌ko
  for helping us with the COMSOL simulations. Finally, we thank G. Bauer for his continuous
  support. '
article_processing_charge: No
author:
- first_name: Hannes
  full_name: Watzinger, Hannes
  id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
  last_name: Watzinger
- first_name: Christoph
  full_name: Kloeffel, Christoph
  last_name: Kloeffel
- first_name: Lada
  full_name: Vukusic, Lada
  id: 31E9F056-F248-11E8-B48F-1D18A9856A87
  last_name: Vukusic
  orcid: 0000-0003-2424-8636
- first_name: Marta
  full_name: Rossell, Marta
  last_name: Rossell
- first_name: Violetta
  full_name: Sessi, Violetta
  last_name: Sessi
- first_name: Josip
  full_name: Kukucka, Josip
  id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
  last_name: Kukucka
- first_name: Raimund
  full_name: Kirchschlager, Raimund
  last_name: Kirchschlager
- first_name: Elisabeth
  full_name: Lausecker, Elisabeth
  id: 33662F76-F248-11E8-B48F-1D18A9856A87
  last_name: Lausecker
- first_name: Alisha
  full_name: Truhlar, Alisha
  id: 49CBC780-F248-11E8-B48F-1D18A9856A87
  last_name: Truhlar
- first_name: Martin
  full_name: Glaser, Martin
  last_name: Glaser
- first_name: Armando
  full_name: Rastelli, Armando
  last_name: Rastelli
- first_name: Andreas
  full_name: Fuhrer, Andreas
  last_name: Fuhrer
- first_name: Daniel
  full_name: Loss, Daniel
  last_name: Loss
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
citation:
  ama: Watzinger H, Kloeffel C, Vukušić L, et al. Heavy-hole states in germanium hut
    wires. <i>Nano Letters</i>. 2016;16(11):6879-6885. doi:<a href="https://doi.org/10.1021/acs.nanolett.6b02715">10.1021/acs.nanolett.6b02715</a>
  apa: Watzinger, H., Kloeffel, C., Vukušić, L., Rossell, M., Sessi, V., Kukucka,
    J., … Katsaros, G. (2016). Heavy-hole states in germanium hut wires. <i>Nano Letters</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.6b02715">https://doi.org/10.1021/acs.nanolett.6b02715</a>
  chicago: Watzinger, Hannes, Christoph Kloeffel, Lada Vukušić, Marta Rossell, Violetta
    Sessi, Josip Kukucka, Raimund Kirchschlager, et al. “Heavy-Hole States in Germanium
    Hut Wires.” <i>Nano Letters</i>. American Chemical Society, 2016. <a href="https://doi.org/10.1021/acs.nanolett.6b02715">https://doi.org/10.1021/acs.nanolett.6b02715</a>.
  ieee: H. Watzinger <i>et al.</i>, “Heavy-hole states in germanium hut wires,” <i>Nano
    Letters</i>, vol. 16, no. 11. American Chemical Society, pp. 6879–6885, 2016.
  ista: Watzinger H, Kloeffel C, Vukušić L, Rossell M, Sessi V, Kukucka J, Kirchschlager
    R, Lausecker E, Truhlar A, Glaser M, Rastelli A, Fuhrer A, Loss D, Katsaros G.
    2016. Heavy-hole states in germanium hut wires. Nano Letters. 16(11), 6879–6885.
  mla: Watzinger, Hannes, et al. “Heavy-Hole States in Germanium Hut Wires.” <i>Nano
    Letters</i>, vol. 16, no. 11, American Chemical Society, 2016, pp. 6879–85, doi:<a
    href="https://doi.org/10.1021/acs.nanolett.6b02715">10.1021/acs.nanolett.6b02715</a>.
  short: H. Watzinger, C. Kloeffel, L. Vukušić, M. Rossell, V. Sessi, J. Kukucka,
    R. Kirchschlager, E. Lausecker, A. Truhlar, M. Glaser, A. Rastelli, A. Fuhrer,
    D. Loss, G. Katsaros, Nano Letters 16 (2016) 6879–6885.
corr_author: '1'
date_created: 2018-12-11T11:51:24Z
date_published: 2016-09-22T00:00:00Z
date_updated: 2026-04-08T07:27:13Z
day: '22'
ddc:
- '539'
department:
- _id: GeKa
doi: 10.1021/acs.nanolett.6b02715
ec_funded: 1
external_id:
  isi:
  - '000387625000025'
file:
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month: '09'
oa: 1
oa_version: Published Version
page: 6879 - 6885
project:
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  call_identifier: FP7
  grant_number: '335497'
  name: Towards Spin qubits and Majorana fermions in Germanium self assembled hut-wires
publication: Nano Letters
publication_status: published
publisher: American Chemical Society
publist_id: '5941'
pubrep_id: '664'
quality_controlled: '1'
related_material:
  record:
  - id: '7977'
    relation: popular_science
  - id: '7996'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Heavy-hole states in germanium hut wires
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 16
year: '2016'
...
---
_id: '1346'
abstract:
- lang: eng
  text: ATP production requires the establishment of an electrochemical proton gradient
    across the inner mitochondrial membrane. Mitochondrial uncouplers dissipate this
    proton gradient and disrupt numerous cellular processes, including vesicular trafficking,
    mainly through energy depletion. Here we show that Endosidin9 (ES9), a novel mitochondrial
    uncoupler, is a potent inhibitor of clathrin-mediated endocytosis (CME) in different
    systems and that ES9 induces inhibition of CME not because of its effect on cellular
    ATP, but rather due to its protonophore activity that leads to cytoplasm acidification.
    We show that the known tyrosine kinase inhibitor tyrphostinA23, which is routinely
    used to block CME, displays similar properties, thus questioning its use as a
    specific inhibitor of cargo recognition by the AP-2 adaptor complex via tyrosine
    motif-based endocytosis signals. Furthermore, we show that cytoplasm acidification
    dramatically affects the dynamics and recruitment of clathrin and associated adaptors,
    and leads to reduction of phosphatidylinositol 4,5-biphosphate from the plasma
    membrane.
acknowledgement: "We thank Yvon Jaillais, Ikuko Hara-Nishimura, Akihiko Nakano, Takashi
  Ueda and Jinxing Lin for providing materials, Natasha Raikhel, Glenn Hicks, Steffen
  Vanneste, and Ricardo Tejos for useful suggestions, Patrick Callaerts for providing
  S2 Drosophila cell cultures, Michael Sixt for providing HeLa cells, Annick Bleys
  for literature searches, VIB Bio Imaging Core for help with imaging conditions and
  Martine De Cock for help in preparing the article. This work was supported by the
  Agency for Innovation by Science\r\nand Technology for a pre-doctoral fellowship
  to W.D.; the Research fund KU Leuven\r\n(GOA), a Methusalem grant of the Flemish
  government and VIB to S.K., J.K. and P.V.;\r\nby the Netherlands Organisation for
  Scientific Research (NWO) for ALW grants\r\n846.11.002 (C.T.) and 867.15.020 (T.M.);
  the European Research Council (project\r\nERC-2011-StG-20101109 PSDP) (to J.F.);
  a European Research Council (ERC) Starting\r\nGrant (grant 260678) (to P.V.), the
  Research Foundation-Flanders (grants G.0747.09,\r\nG094011 and G095511) (to P.V.),
  the Hercules Foundation, an Interuniversity Attraction\r\nPoles Poles Program, initiated
  by the Belgian State, Science Policy Office (to P.V.),\r\nthe Swedish VetenskapsRådet
  grant to O.K., the Ghent University ‘Bijzonder\r\nOnderzoek Fonds’ (BOF) for a predoctoral
  fellowship to F.A.O.-M., the Research\r\nFoundation-Flanders (FWO) to K.M. and E.R."
article_number: '11710'
article_processing_charge: No
author:
- first_name: Wim
  full_name: Dejonghe, Wim
  last_name: Dejonghe
- first_name: Sabine
  full_name: Kuenen, Sabine
  last_name: Kuenen
- first_name: Evelien
  full_name: Mylle, Evelien
  last_name: Mylle
- first_name: Mina K
  full_name: Vasileva, Mina K
  id: 3407EB18-F248-11E8-B48F-1D18A9856A87
  last_name: Vasileva
- first_name: Olivier
  full_name: Keech, Olivier
  last_name: Keech
- first_name: Corrado
  full_name: Viotti, Corrado
  last_name: Viotti
- first_name: Jef
  full_name: Swerts, Jef
  last_name: Swerts
- first_name: Matyas
  full_name: Fendrych, Matyas
  id: 43905548-F248-11E8-B48F-1D18A9856A87
  last_name: Fendrych
  orcid: 0000-0002-9767-8699
- first_name: Fausto
  full_name: Ortiz Morea, Fausto
  last_name: Ortiz Morea
- first_name: Kiril
  full_name: Mishev, Kiril
  last_name: Mishev
- first_name: Simon
  full_name: Delang, Simon
  last_name: Delang
- first_name: Stefan
  full_name: Scholl, Stefan
  last_name: Scholl
- first_name: Xavier
  full_name: Zarza, Xavier
  last_name: Zarza
- first_name: Mareike
  full_name: Heilmann, Mareike
  last_name: Heilmann
- first_name: Jiorgos
  full_name: Kourelis, Jiorgos
  last_name: Kourelis
- first_name: Jaroslaw
  full_name: Kasprowicz, Jaroslaw
  last_name: Kasprowicz
- first_name: Le
  full_name: Nguyen, Le
  last_name: Nguyen
- first_name: Andrzej
  full_name: Drozdzecki, Andrzej
  last_name: Drozdzecki
- first_name: Isabelle
  full_name: Van Houtte, Isabelle
  last_name: Van Houtte
- first_name: Anna
  full_name: Szatmári, Anna
  last_name: Szatmári
- first_name: Mateusz
  full_name: Majda, Mateusz
  last_name: Majda
- first_name: Gary
  full_name: Baisa, Gary
  last_name: Baisa
- first_name: Sebastian
  full_name: Bednarek, Sebastian
  last_name: Bednarek
- first_name: Stéphanie
  full_name: Robert, Stéphanie
  last_name: Robert
- first_name: Dominique
  full_name: Audenaert, Dominique
  last_name: Audenaert
- first_name: Christa
  full_name: Testerink, Christa
  last_name: Testerink
- first_name: Teun
  full_name: Munnik, Teun
  last_name: Munnik
- first_name: Daniël
  full_name: Van Damme, Daniël
  last_name: Van Damme
- first_name: Ingo
  full_name: Heilmann, Ingo
  last_name: Heilmann
- first_name: Karin
  full_name: Schumacher, Karin
  last_name: Schumacher
- first_name: Johan
  full_name: Winne, Johan
  last_name: Winne
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Patrik
  full_name: Verstreken, Patrik
  last_name: Verstreken
- first_name: Eugenia
  full_name: Russinova, Eugenia
  last_name: Russinova
citation:
  ama: Dejonghe W, Kuenen S, Mylle E, et al. Mitochondrial uncouplers inhibit clathrin-mediated
    endocytosis largely through cytoplasmic acidification. <i>Nature Communications</i>.
    2016;7. doi:<a href="https://doi.org/10.1038/ncomms11710">10.1038/ncomms11710</a>
  apa: Dejonghe, W., Kuenen, S., Mylle, E., Vasileva, M. K., Keech, O., Viotti, C.,
    … Russinova, E. (2016). Mitochondrial uncouplers inhibit clathrin-mediated endocytosis
    largely through cytoplasmic acidification. <i>Nature Communications</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/ncomms11710">https://doi.org/10.1038/ncomms11710</a>
  chicago: Dejonghe, Wim, Sabine Kuenen, Evelien Mylle, Mina K Vasileva, Olivier Keech,
    Corrado Viotti, Jef Swerts, et al. “Mitochondrial Uncouplers Inhibit Clathrin-Mediated
    Endocytosis Largely through Cytoplasmic Acidification.” <i>Nature Communications</i>.
    Nature Publishing Group, 2016. <a href="https://doi.org/10.1038/ncomms11710">https://doi.org/10.1038/ncomms11710</a>.
  ieee: W. Dejonghe <i>et al.</i>, “Mitochondrial uncouplers inhibit clathrin-mediated
    endocytosis largely through cytoplasmic acidification,” <i>Nature Communications</i>,
    vol. 7. Nature Publishing Group, 2016.
  ista: Dejonghe W, Kuenen S, Mylle E, Vasileva MK, Keech O, Viotti C, Swerts J, Fendrych
    M, Ortiz Morea F, Mishev K, Delang S, Scholl S, Zarza X, Heilmann M, Kourelis
    J, Kasprowicz J, Nguyen L, Drozdzecki A, Van Houtte I, Szatmári A, Majda M, Baisa
    G, Bednarek S, Robert S, Audenaert D, Testerink C, Munnik T, Van Damme D, Heilmann
    I, Schumacher K, Winne J, Friml J, Verstreken P, Russinova E. 2016. Mitochondrial
    uncouplers inhibit clathrin-mediated endocytosis largely through cytoplasmic acidification.
    Nature Communications. 7, 11710.
  mla: Dejonghe, Wim, et al. “Mitochondrial Uncouplers Inhibit Clathrin-Mediated Endocytosis
    Largely through Cytoplasmic Acidification.” <i>Nature Communications</i>, vol.
    7, 11710, Nature Publishing Group, 2016, doi:<a href="https://doi.org/10.1038/ncomms11710">10.1038/ncomms11710</a>.
  short: W. Dejonghe, S. Kuenen, E. Mylle, M.K. Vasileva, O. Keech, C. Viotti, J.
    Swerts, M. Fendrych, F. Ortiz Morea, K. Mishev, S. Delang, S. Scholl, X. Zarza,
    M. Heilmann, J. Kourelis, J. Kasprowicz, L. Nguyen, A. Drozdzecki, I. Van Houtte,
    A. Szatmári, M. Majda, G. Baisa, S. Bednarek, S. Robert, D. Audenaert, C. Testerink,
    T. Munnik, D. Van Damme, I. Heilmann, K. Schumacher, J. Winne, J. Friml, P. Verstreken,
    E. Russinova, Nature Communications 7 (2016).
date_created: 2018-12-11T11:51:30Z
date_published: 2016-06-08T00:00:00Z
date_updated: 2026-04-08T13:54:44Z
day: '08'
ddc:
- '570'
department:
- _id: JiFr
doi: 10.1038/ncomms11710
ec_funded: 1
external_id:
  isi:
  - '000377899800001'
file:
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  checksum: e8dc81b3e44db5a7718d7f1501ce1aa7
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  date_created: 2018-12-12T10:18:47Z
  date_updated: 2020-07-14T12:44:45Z
  file_id: '5369'
  file_name: IST-2016-653-v1+1_ncomms11710_1_.pdf
  file_size: 3532505
  relation: main_file
file_date_updated: 2020-07-14T12:44:45Z
has_accepted_license: '1'
intvolume: '         7'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5906'
pubrep_id: '653'
quality_controlled: '1'
related_material:
  record:
  - id: '7172'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Mitochondrial uncouplers inhibit clathrin-mediated endocytosis largely through
  cytoplasmic acidification
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
