---
_id: '152'
abstract:
- lang: eng
  text: Complex I has an essential role in ATP production by coupling electron transfer
    from NADH to quinone with translocation of protons across the inner mitochondrial
    membrane. Isolated complex I deficiency is a frequent cause of mitochondrial inherited
    diseases. Complex I has also been implicated in cancer, ageing, and neurodegenerative
    conditions. Until recently, the understanding of complex I deficiency on the molecular
    level was limited due to the lack of high-resolution structures of the enzyme.
    However, due to developments in single particle cryo-electron microscopy (cryo-EM),
    recent studies have reported nearly atomic resolution maps and models of mitochondrial
    complex I. These structures significantly add to our understanding of complex
    I mechanism and assembly. The disease-causing mutations are discussed here in
    their structural context.
article_processing_charge: No
article_type: original
author:
- first_name: Karol
  full_name: Fiedorczuk, Karol
  id: 5BFF67CE-02D1-11E9-B11A-A5A4D7DFFFD0
  last_name: Fiedorczuk
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Fiedorczuk K, Sazanov LA. Mammalian mitochondrial complex I structure and disease
    causing mutations. <i>Trends in Cell Biology</i>. 2018;28(10):835-867. doi:<a
    href="https://doi.org/10.1016/j.tcb.2018.06.006">10.1016/j.tcb.2018.06.006</a>
  apa: Fiedorczuk, K., &#38; Sazanov, L. A. (2018). Mammalian mitochondrial complex
    I structure and disease causing mutations. <i>Trends in Cell Biology</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.tcb.2018.06.006">https://doi.org/10.1016/j.tcb.2018.06.006</a>
  chicago: Fiedorczuk, Karol, and Leonid A Sazanov. “Mammalian Mitochondrial Complex
    I Structure and Disease Causing Mutations.” <i>Trends in Cell Biology</i>. Elsevier,
    2018. <a href="https://doi.org/10.1016/j.tcb.2018.06.006">https://doi.org/10.1016/j.tcb.2018.06.006</a>.
  ieee: K. Fiedorczuk and L. A. Sazanov, “Mammalian mitochondrial complex I structure
    and disease causing mutations,” <i>Trends in Cell Biology</i>, vol. 28, no. 10.
    Elsevier, pp. 835–867, 2018.
  ista: Fiedorczuk K, Sazanov LA. 2018. Mammalian mitochondrial complex I structure
    and disease causing mutations. Trends in Cell Biology. 28(10), 835–867.
  mla: Fiedorczuk, Karol, and Leonid A. Sazanov. “Mammalian Mitochondrial Complex
    I Structure and Disease Causing Mutations.” <i>Trends in Cell Biology</i>, vol.
    28, no. 10, Elsevier, 2018, pp. 835–67, doi:<a href="https://doi.org/10.1016/j.tcb.2018.06.006">10.1016/j.tcb.2018.06.006</a>.
  short: K. Fiedorczuk, L.A. Sazanov, Trends in Cell Biology 28 (2018) 835–867.
date_created: 2018-12-11T11:44:54Z
date_published: 2018-07-26T00:00:00Z
date_updated: 2023-09-13T08:51:56Z
day: '26'
ddc:
- '572'
department:
- _id: LeSa
doi: 10.1016/j.tcb.2018.06.006
external_id:
  isi:
  - '000445118200007'
file:
- access_level: open_access
  checksum: ef6d2b4e1fd63948539639242610bfa6
  content_type: application/pdf
  creator: lsazanov
  date_created: 2019-11-07T12:55:20Z
  date_updated: 2020-07-14T12:45:00Z
  file_id: '6994'
  file_name: SasanovFinalMS+EdComments_LS_allacc_withFigs.pdf
  file_size: 2185385
  relation: main_file
file_date_updated: 2020-07-14T12:45:00Z
has_accepted_license: '1'
intvolume: '        28'
isi: 1
issue: '10'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Submitted Version
page: 835 - 867
publication: Trends in Cell Biology
publication_status: published
publisher: Elsevier
publist_id: '7769'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mammalian mitochondrial complex I structure and disease causing mutations
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 28
year: '2018'
...
---
_id: '15232'
abstract:
- lang: eng
  text: 'In this paper we describe the potential of the enhanced X-ray Timing and
    Polarimetry (eXTP) mission for studies related to accretion flows in the strong
    field gravity regime around both stellar-mass and supermassive black-holes. eXTP
    has the unique capability of using advanced “spectral-timing-polarimetry” techniques
    to analyze the rapid variations with three orthogonal diagnostics of the flow
    and its geometry, yielding unprecedented insight into the inner accreting regions,
    the effects of strong field gravity on the material within them and the powerful
    outflows which are driven by the accretion process. '
article_number: '29504'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Alessandra De
  full_name: Rosa, Alessandra De
  last_name: Rosa
- first_name: Phil
  full_name: Uttley, Phil
  last_name: Uttley
- first_name: LiJun
  full_name: Gou, LiJun
  last_name: Gou
- first_name: Yuan
  full_name: Liu, Yuan
  last_name: Liu
- first_name: Cosimo
  full_name: Bambi, Cosimo
  last_name: Bambi
- first_name: Didier
  full_name: Barret, Didier
  last_name: Barret
- first_name: Tomaso
  full_name: Belloni, Tomaso
  last_name: Belloni
- first_name: Emanuele
  full_name: Berti, Emanuele
  last_name: Berti
- first_name: Stefano
  full_name: Bianchi, Stefano
  last_name: Bianchi
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Piergiorgio
  full_name: Casella, Piergiorgio
  last_name: Casella
- first_name: Marco
  full_name: Feroci, Marco
  last_name: Feroci
- first_name: Valeria
  full_name: Ferrari, Valeria
  last_name: Ferrari
- first_name: Leonardo
  full_name: Gualtieri, Leonardo
  last_name: Gualtieri
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Adam
  full_name: Ingram, Adam
  last_name: Ingram
- first_name: Vladimir
  full_name: Karas, Vladimir
  last_name: Karas
- first_name: FangJun
  full_name: Lu, FangJun
  last_name: Lu
- first_name: Bin
  full_name: Luo, Bin
  last_name: Luo
- first_name: Giorgio
  full_name: Matt, Giorgio
  last_name: Matt
- first_name: Sara
  full_name: Motta, Sara
  last_name: Motta
- first_name: Joseph
  full_name: Neilsen, Joseph
  last_name: Neilsen
- first_name: Paolo
  full_name: Pani, Paolo
  last_name: Pani
- first_name: Andrea
  full_name: Santangelo, Andrea
  last_name: Santangelo
- first_name: XinWen
  full_name: Shu, XinWen
  last_name: Shu
- first_name: JunFeng
  full_name: Wang, JunFeng
  last_name: Wang
- first_name: Jian-Min
  full_name: Wang, Jian-Min
  last_name: Wang
- first_name: YongQuan
  full_name: Xue, YongQuan
  last_name: Xue
- first_name: YuPeng
  full_name: Xu, YuPeng
  last_name: Xu
- first_name: WeiMin
  full_name: Yuan, WeiMin
  last_name: Yuan
- first_name: YeFei
  full_name: Yuan, YeFei
  last_name: Yuan
- first_name: Shuang-Nan
  full_name: Zhang, Shuang-Nan
  last_name: Zhang
- first_name: Shu
  full_name: Zhang, Shu
  last_name: Zhang
- first_name: Ivan
  full_name: Agudo, Ivan
  last_name: Agudo
- first_name: Lorenzo
  full_name: Amati, Lorenzo
  last_name: Amati
- first_name: Nils
  full_name: Andersson, Nils
  last_name: Andersson
- first_name: Cristina
  full_name: Baglio, Cristina
  last_name: Baglio
- first_name: Pavel
  full_name: Bakala, Pavel
  last_name: Bakala
- first_name: Altan
  full_name: Baykal, Altan
  last_name: Baykal
- first_name: Sudip
  full_name: Bhattacharyya, Sudip
  last_name: Bhattacharyya
- first_name: Ignazio
  full_name: Bombaci, Ignazio
  last_name: Bombaci
- first_name: Niccoló
  full_name: Bucciantini, Niccoló
  last_name: Bucciantini
- first_name: Fiamma
  full_name: Capitanio, Fiamma
  last_name: Capitanio
- first_name: Riccardo
  full_name: Ciolfi, Riccardo
  last_name: Ciolfi
- first_name: Wei K.
  full_name: Cui, Wei K.
  last_name: Cui
- first_name: Filippo
  full_name: D’Ammando, Filippo
  last_name: D’Ammando
- first_name: Thomas
  full_name: Dauser, Thomas
  last_name: Dauser
- first_name: Melania
  full_name: Del Santo, Melania
  last_name: Del Santo
- first_name: Barbara
  full_name: De Marco, Barbara
  last_name: De Marco
- first_name: Tiziana
  full_name: Di Salvo, Tiziana
  last_name: Di Salvo
- first_name: Chris
  full_name: Done, Chris
  last_name: Done
- first_name: Michal
  full_name: Dovčiak, Michal
  last_name: Dovčiak
- first_name: Andrew C.
  full_name: Fabian, Andrew C.
  last_name: Fabian
- first_name: Maurizio
  full_name: Falanga, Maurizio
  last_name: Falanga
- first_name: Angelo Francesco
  full_name: Gambino, Angelo Francesco
  last_name: Gambino
- first_name: Bruce
  full_name: Gendre, Bruce
  last_name: Gendre
- first_name: Victoria
  full_name: Grinberg, Victoria
  last_name: Grinberg
- first_name: Alexander
  full_name: Heger, Alexander
  last_name: Heger
- first_name: Jeroen
  full_name: Homan, Jeroen
  last_name: Homan
- first_name: Rosario
  full_name: Iaria, Rosario
  last_name: Iaria
- first_name: JiaChen
  full_name: Jiang, JiaChen
  last_name: Jiang
- first_name: ChiChuan
  full_name: Jin, ChiChuan
  last_name: Jin
- first_name: Elmar
  full_name: Koerding, Elmar
  last_name: Koerding
- first_name: Manu
  full_name: Linares, Manu
  last_name: Linares
- first_name: Zhu
  full_name: Liu, Zhu
  last_name: Liu
- first_name: Thomas J.
  full_name: Maccarone, Thomas J.
  last_name: Maccarone
- first_name: Julien
  full_name: Malzac, Julien
  last_name: Malzac
- first_name: Antonios
  full_name: Manousakis, Antonios
  last_name: Manousakis
- first_name: Frédéric
  full_name: Marin, Frédéric
  last_name: Marin
- first_name: Andrea
  full_name: Marinucci, Andrea
  last_name: Marinucci
- first_name: Missagh
  full_name: Mehdipour, Missagh
  last_name: Mehdipour
- first_name: Mariano
  full_name: Méndez, Mariano
  last_name: Méndez
- first_name: Simone
  full_name: Migliari, Simone
  last_name: Migliari
- first_name: Cole
  full_name: Miller, Cole
  last_name: Miller
- first_name: Giovanni
  full_name: Miniutti, Giovanni
  last_name: Miniutti
- first_name: Emanuele
  full_name: Nardini, Emanuele
  last_name: Nardini
- first_name: Paul T.
  full_name: O’Brien, Paul T.
  last_name: O’Brien
- first_name: Julian P.
  full_name: Osborne, Julian P.
  last_name: Osborne
- first_name: Pierre Olivier
  full_name: Petrucci, Pierre Olivier
  last_name: Petrucci
- first_name: Andrea
  full_name: Possenti, Andrea
  last_name: Possenti
- first_name: Alessandro
  full_name: Riggio, Alessandro
  last_name: Riggio
- first_name: Jerome
  full_name: Rodriguez, Jerome
  last_name: Rodriguez
- first_name: Andrea
  full_name: Sanna, Andrea
  last_name: Sanna
- first_name: LiJing
  full_name: Shao, LiJing
  last_name: Shao
- first_name: Malgosia
  full_name: Sobolewska, Malgosia
  last_name: Sobolewska
- first_name: Eva
  full_name: Sramkova, Eva
  last_name: Sramkova
- first_name: Abigail L.
  full_name: Stevens, Abigail L.
  last_name: Stevens
- first_name: Holger
  full_name: Stiele, Holger
  last_name: Stiele
- first_name: Giulia
  full_name: Stratta, Giulia
  last_name: Stratta
- first_name: Zdenek
  full_name: Stuchlik, Zdenek
  last_name: Stuchlik
- first_name: Jiri
  full_name: Svoboda, Jiri
  last_name: Svoboda
- first_name: Fabrizio
  full_name: Tamburini, Fabrizio
  last_name: Tamburini
- first_name: Thomas M.
  full_name: Tauris, Thomas M.
  last_name: Tauris
- first_name: Francesco
  full_name: Tombesi, Francesco
  last_name: Tombesi
- first_name: Gabriel
  full_name: Torok, Gabriel
  last_name: Torok
- first_name: Martin
  full_name: Urbanec, Martin
  last_name: Urbanec
- first_name: Frederic
  full_name: Vincent, Frederic
  last_name: Vincent
- first_name: QingWen
  full_name: Wu, QingWen
  last_name: Wu
- first_name: Feng
  full_name: Yuan, Feng
  last_name: Yuan
- first_name: Jean J. M.
  full_name: in’ t Zand, Jean J. M.
  last_name: in’ t Zand
- first_name: Andrzej A.
  full_name: Zdziarski, Andrzej A.
  last_name: Zdziarski
- first_name: XinLin
  full_name: Zhou, XinLin
  last_name: Zhou
citation:
  ama: Rosa AD, Uttley P, Gou L, et al. Accretion in strong field gravity with eXTP.
    <i>Science China Physics, Mechanics &#38; Astronomy</i>. 2018;62(2). doi:<a href="https://doi.org/10.1007/s11433-018-9297-0">10.1007/s11433-018-9297-0</a>
  apa: Rosa, A. D., Uttley, P., Gou, L., Liu, Y., Bambi, C., Barret, D., … Zhou, X.
    (2018). Accretion in strong field gravity with eXTP. <i>Science China Physics,
    Mechanics &#38; Astronomy</i>. Springer Nature. <a href="https://doi.org/10.1007/s11433-018-9297-0">https://doi.org/10.1007/s11433-018-9297-0</a>
  chicago: Rosa, Alessandra De, Phil Uttley, LiJun Gou, Yuan Liu, Cosimo Bambi, Didier
    Barret, Tomaso Belloni, et al. “Accretion in Strong Field Gravity with EXTP.”
    <i>Science China Physics, Mechanics &#38; Astronomy</i>. Springer Nature, 2018.
    <a href="https://doi.org/10.1007/s11433-018-9297-0">https://doi.org/10.1007/s11433-018-9297-0</a>.
  ieee: A. D. Rosa <i>et al.</i>, “Accretion in strong field gravity with eXTP,” <i>Science
    China Physics, Mechanics &#38; Astronomy</i>, vol. 62, no. 2. Springer Nature,
    2018.
  ista: Rosa AD et al. 2018. Accretion in strong field gravity with eXTP. Science
    China Physics, Mechanics &#38; Astronomy. 62(2), 29504.
  mla: Rosa, Alessandra De, et al. “Accretion in Strong Field Gravity with EXTP.”
    <i>Science China Physics, Mechanics &#38; Astronomy</i>, vol. 62, no. 2, 29504,
    Springer Nature, 2018, doi:<a href="https://doi.org/10.1007/s11433-018-9297-0">10.1007/s11433-018-9297-0</a>.
  short: A.D. Rosa, P. Uttley, L. Gou, Y. Liu, C. Bambi, D. Barret, T. Belloni, E.
    Berti, S. Bianchi, I. Caiazzo, P. Casella, M. Feroci, V. Ferrari, L. Gualtieri,
    J. Heyl, A. Ingram, V. Karas, F. Lu, B. Luo, G. Matt, S. Motta, J. Neilsen, P.
    Pani, A. Santangelo, X. Shu, J. Wang, J.-M. Wang, Y. Xue, Y. Xu, W. Yuan, Y. Yuan,
    S.-N. Zhang, S. Zhang, I. Agudo, L. Amati, N. Andersson, C. Baglio, P. Bakala,
    A. Baykal, S. Bhattacharyya, I. Bombaci, N. Bucciantini, F. Capitanio, R. Ciolfi,
    W.K. Cui, F. D’Ammando, T. Dauser, M. Del Santo, B. De Marco, T. Di Salvo, C.
    Done, M. Dovčiak, A.C. Fabian, M. Falanga, A.F. Gambino, B. Gendre, V. Grinberg,
    A. Heger, J. Homan, R. Iaria, J. Jiang, C. Jin, E. Koerding, M. Linares, Z. Liu,
    T.J. Maccarone, J. Malzac, A. Manousakis, F. Marin, A. Marinucci, M. Mehdipour,
    M. Méndez, S. Migliari, C. Miller, G. Miniutti, E. Nardini, P.T. O’Brien, J.P.
    Osborne, P.O. Petrucci, A. Possenti, A. Riggio, J. Rodriguez, A. Sanna, L. Shao,
    M. Sobolewska, E. Sramkova, A.L. Stevens, H. Stiele, G. Stratta, Z. Stuchlik,
    J. Svoboda, F. Tamburini, T.M. Tauris, F. Tombesi, G. Torok, M. Urbanec, F. Vincent,
    Q. Wu, F. Yuan, J.J.M. in’ t Zand, A.A. Zdziarski, X. Zhou, Science China Physics,
    Mechanics &#38; Astronomy 62 (2018).
date_created: 2024-03-26T10:37:41Z
date_published: 2018-12-07T00:00:00Z
date_updated: 2024-04-05T07:12:09Z
day: '07'
doi: 10.1007/s11433-018-9297-0
extern: '1'
external_id:
  arxiv:
  - '1812.04022'
intvolume: '        62'
issue: '2'
keyword:
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1812.04022
month: '12'
oa: 1
oa_version: Preprint
publication: Science China Physics, Mechanics & Astronomy
publication_identifier:
  eissn:
  - 1869-1927
  issn:
  - 1674-7348
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Accretion in strong field gravity with eXTP
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 62
year: '2018'
...
---
_id: '15233'
abstract:
- lang: eng
  text: In this paper we present the science potential of the enhanced X-ray Timing
    and Polarimetry (eXTP) mission for studies of strongly magnetized objects. We
    will focus on the physics and astrophysics of strongly magnetized objects, namely
    magnetars, accreting X-ray pulsars, and rotation powered pulsars. We also discuss
    the science potential of eXTP for QED studies. Developed by an international Consortium
    led by the Institute of High Energy Physics of the Chinese Academy of Sciences,
    the eXTP mission is expected to be launched in the mid 2020s.
article_number: '29505'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Andrea
  full_name: Santangelo, Andrea
  last_name: Santangelo
- first_name: Silvia
  full_name: Zane, Silvia
  last_name: Zane
- first_name: Hua
  full_name: Feng, Hua
  last_name: Feng
- first_name: RenXin
  full_name: Xu, RenXin
  last_name: Xu
- first_name: Victor
  full_name: Doroshenko, Victor
  last_name: Doroshenko
- first_name: Enrico
  full_name: Bozzo, Enrico
  last_name: Bozzo
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Francesco Coti
  full_name: Zelati, Francesco Coti
  last_name: Zelati
- first_name: Paolo
  full_name: Esposito, Paolo
  last_name: Esposito
- first_name: Denis
  full_name: González-Caniulef, Denis
  last_name: González-Caniulef
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Daniela
  full_name: Huppenkothen, Daniela
  last_name: Huppenkothen
- first_name: Gianluca
  full_name: Israel, Gianluca
  last_name: Israel
- first_name: ZhaoSheng
  full_name: Li, ZhaoSheng
  last_name: Li
- first_name: Lin
  full_name: Lin, Lin
  last_name: Lin
- first_name: Roberto
  full_name: Mignani, Roberto
  last_name: Mignani
- first_name: Nanda
  full_name: Rea, Nanda
  last_name: Rea
- first_name: Mauro
  full_name: Orlandini, Mauro
  last_name: Orlandini
- first_name: Roberto
  full_name: Taverna, Roberto
  last_name: Taverna
- first_name: Hao
  full_name: Tong, Hao
  last_name: Tong
- first_name: Roberto
  full_name: Turolla, Roberto
  last_name: Turolla
- first_name: Cristina
  full_name: Baglio, Cristina
  last_name: Baglio
- first_name: Federico
  full_name: Bernardini, Federico
  last_name: Bernardini
- first_name: Niccolo’
  full_name: Bucciantini, Niccolo’
  last_name: Bucciantini
- first_name: Marco
  full_name: Feroci, Marco
  last_name: Feroci
- first_name: Felix
  full_name: Fürst, Felix
  last_name: Fürst
- first_name: Ersin
  full_name: Göğüş, Ersin
  last_name: Göğüş
- first_name: Can
  full_name: Güngör, Can
  last_name: Güngör
- first_name: Long
  full_name: Ji, Long
  last_name: Ji
- first_name: FangJun
  full_name: Lu, FangJun
  last_name: Lu
- first_name: Antonios
  full_name: Manousakis, Antonios
  last_name: Manousakis
- first_name: Sandro
  full_name: Mereghetti, Sandro
  last_name: Mereghetti
- first_name: Romana
  full_name: Mikusincova, Romana
  last_name: Mikusincova
- first_name: Biswajit
  full_name: Paul, Biswajit
  last_name: Paul
- first_name: Chanda
  full_name: Prescod-Weinstein, Chanda
  last_name: Prescod-Weinstein
- first_name: George
  full_name: Younes, George
  last_name: Younes
- first_name: Andrea
  full_name: Tiengo, Andrea
  last_name: Tiengo
- first_name: YuPeng
  full_name: Xu, YuPeng
  last_name: Xu
- first_name: Anna
  full_name: Watts, Anna
  last_name: Watts
- first_name: Shu
  full_name: Zhang, Shu
  last_name: Zhang
- first_name: Shuang-Nan
  full_name: Zhan, Shuang-Nan
  last_name: Zhan
citation:
  ama: Santangelo A, Zane S, Feng H, et al. Physics and astrophysics of strong magnetic
    field systems with eXTP. <i>Science China Physics, Mechanics &#38; Astronomy</i>.
    2018;62(2). doi:<a href="https://doi.org/10.1007/s11433-018-9234-3">10.1007/s11433-018-9234-3</a>
  apa: Santangelo, A., Zane, S., Feng, H., Xu, R., Doroshenko, V., Bozzo, E., … Zhan,
    S.-N. (2018). Physics and astrophysics of strong magnetic field systems with eXTP.
    <i>Science China Physics, Mechanics &#38; Astronomy</i>. Springer Nature. <a href="https://doi.org/10.1007/s11433-018-9234-3">https://doi.org/10.1007/s11433-018-9234-3</a>
  chicago: Santangelo, Andrea, Silvia Zane, Hua Feng, RenXin Xu, Victor Doroshenko,
    Enrico Bozzo, Ilaria Caiazzo, et al. “Physics and Astrophysics of Strong Magnetic
    Field Systems with EXTP.” <i>Science China Physics, Mechanics &#38; Astronomy</i>.
    Springer Nature, 2018. <a href="https://doi.org/10.1007/s11433-018-9234-3">https://doi.org/10.1007/s11433-018-9234-3</a>.
  ieee: A. Santangelo <i>et al.</i>, “Physics and astrophysics of strong magnetic
    field systems with eXTP,” <i>Science China Physics, Mechanics &#38; Astronomy</i>,
    vol. 62, no. 2. Springer Nature, 2018.
  ista: Santangelo A, Zane S, Feng H, Xu R, Doroshenko V, Bozzo E, Caiazzo I, Zelati
    FC, Esposito P, González-Caniulef D, Heyl J, Huppenkothen D, Israel G, Li Z, Lin
    L, Mignani R, Rea N, Orlandini M, Taverna R, Tong H, Turolla R, Baglio C, Bernardini
    F, Bucciantini N, Feroci M, Fürst F, Göğüş E, Güngör C, Ji L, Lu F, Manousakis
    A, Mereghetti S, Mikusincova R, Paul B, Prescod-Weinstein C, Younes G, Tiengo
    A, Xu Y, Watts A, Zhang S, Zhan S-N. 2018. Physics and astrophysics of strong
    magnetic field systems with eXTP. Science China Physics, Mechanics &#38; Astronomy.
    62(2), 29505.
  mla: Santangelo, Andrea, et al. “Physics and Astrophysics of Strong Magnetic Field
    Systems with EXTP.” <i>Science China Physics, Mechanics &#38; Astronomy</i>, vol.
    62, no. 2, 29505, Springer Nature, 2018, doi:<a href="https://doi.org/10.1007/s11433-018-9234-3">10.1007/s11433-018-9234-3</a>.
  short: A. Santangelo, S. Zane, H. Feng, R. Xu, V. Doroshenko, E. Bozzo, I. Caiazzo,
    F.C. Zelati, P. Esposito, D. González-Caniulef, J. Heyl, D. Huppenkothen, G. Israel,
    Z. Li, L. Lin, R. Mignani, N. Rea, M. Orlandini, R. Taverna, H. Tong, R. Turolla,
    C. Baglio, F. Bernardini, N. Bucciantini, M. Feroci, F. Fürst, E. Göğüş, C. Güngör,
    L. Ji, F. Lu, A. Manousakis, S. Mereghetti, R. Mikusincova, B. Paul, C. Prescod-Weinstein,
    G. Younes, A. Tiengo, Y. Xu, A. Watts, S. Zhang, S.-N. Zhan, Science China Physics,
    Mechanics &#38; Astronomy 62 (2018).
date_created: 2024-03-26T10:38:05Z
date_published: 2018-10-08T00:00:00Z
date_updated: 2024-04-08T07:01:20Z
day: '08'
doi: 10.1007/s11433-018-9234-3
extern: '1'
external_id:
  arxiv:
  - '1812.04460'
intvolume: '        62'
issue: '2'
keyword:
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1812.04460
month: '10'
oa: 1
oa_version: Preprint
publication: Science China Physics, Mechanics & Astronomy
publication_identifier:
  eissn:
  - 1869-1927
  issn:
  - 1674-7348
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Physics and astrophysics of strong magnetic field systems with eXTP
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2018'
...
---
_id: '15234'
abstract:
- lang: eng
  text: Using parallaxes from Gaia Data Release 2 (Gaia DR2), we estimate the distance
    to the globular clusters 47 Tuc and NGC 362, taking advantage of the background
    stars in the Small Magellanic Cloud and quasars to account for various parallax
    systematics. We found the parallax to be dependent on the Gaia DR2 G-band apparent
    magnitude for stars with 13 < G < 18, where brighter stars have a lower parallax
    zero point than fainter stars. The distance to 47 Tuc was found to be 4.45 ± 0.01
    ± 0.12 kpc, and for NGC 362 8.54 ± 0.20 ± 0.44 kpc, with random and systematic
    errors listed, respectively. This is the first time a precise distance measurement
    directly using parallaxes has been determined for either of these two globular
    clusters.
article_number: '132'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Seery
  full_name: Chen, Seery
  last_name: Chen
- first_name: Harvey
  full_name: Richer, Harvey
  last_name: Richer
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
citation:
  ama: Chen S, Richer H, Caiazzo I, Heyl J. Distances to the globular clusters 47
    Tucanae and NGC 362 using Gaia DR2 parallaxes. <i>The Astrophysical Journal</i>.
    2018;867(2). doi:<a href="https://doi.org/10.3847/1538-4357/aae089">10.3847/1538-4357/aae089</a>
  apa: Chen, S., Richer, H., Caiazzo, I., &#38; Heyl, J. (2018). Distances to the
    globular clusters 47 Tucanae and NGC 362 using Gaia DR2 parallaxes. <i>The Astrophysical
    Journal</i>. American Astronomical Society. <a href="https://doi.org/10.3847/1538-4357/aae089">https://doi.org/10.3847/1538-4357/aae089</a>
  chicago: Chen, Seery, Harvey Richer, Ilaria Caiazzo, and Jeremy Heyl. “Distances
    to the Globular Clusters 47 Tucanae and NGC 362 Using Gaia DR2 Parallaxes.” <i>The
    Astrophysical Journal</i>. American Astronomical Society, 2018. <a href="https://doi.org/10.3847/1538-4357/aae089">https://doi.org/10.3847/1538-4357/aae089</a>.
  ieee: S. Chen, H. Richer, I. Caiazzo, and J. Heyl, “Distances to the globular clusters
    47 Tucanae and NGC 362 using Gaia DR2 parallaxes,” <i>The Astrophysical Journal</i>,
    vol. 867, no. 2. American Astronomical Society, 2018.
  ista: Chen S, Richer H, Caiazzo I, Heyl J. 2018. Distances to the globular clusters
    47 Tucanae and NGC 362 using Gaia DR2 parallaxes. The Astrophysical Journal. 867(2),
    132.
  mla: Chen, Seery, et al. “Distances to the Globular Clusters 47 Tucanae and NGC
    362 Using Gaia DR2 Parallaxes.” <i>The Astrophysical Journal</i>, vol. 867, no.
    2, 132, American Astronomical Society, 2018, doi:<a href="https://doi.org/10.3847/1538-4357/aae089">10.3847/1538-4357/aae089</a>.
  short: S. Chen, H. Richer, I. Caiazzo, J. Heyl, The Astrophysical Journal 867 (2018).
date_created: 2024-03-26T10:38:28Z
date_published: 2018-11-07T00:00:00Z
date_updated: 2024-04-08T07:01:51Z
day: '07'
doi: 10.3847/1538-4357/aae089
extern: '1'
external_id:
  arxiv:
  - '1807.07089'
intvolume: '       867'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1807.07089
month: '11'
oa: 1
oa_version: Preprint
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distances to the globular clusters 47 Tucanae and NGC 362 using Gaia DR2 parallaxes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 867
year: '2018'
...
---
_id: '15235'
abstract:
- lang: eng
  text: Radiative corrections of quantum electrodynamics cause a vacuum threaded by
    a magnetic field to be birefringent. This means that radiation of different polarizations
    travels at different speeds. Even in the strong magnetic fields of astrophysical
    sources, the difference in speed is small. However, it has profound consequences
    for the extent of polarization expected from strongly magnetized sources. We demonstrate
    how the birefringence arises from first principles, show how birefringence affects
    the polarization state of radiation and present recent calculations for the expected
    polarization from magnetars and X-ray pulsars.
article_number: '76'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
citation:
  ama: 'Heyl J, Caiazzo I. Strongly magnetized sources: QED and X-ray polarization.
    <i>Galaxies</i>. 2018;6(3). doi:<a href="https://doi.org/10.3390/galaxies6030076">10.3390/galaxies6030076</a>'
  apa: 'Heyl, J., &#38; Caiazzo, I. (2018). Strongly magnetized sources: QED and X-ray
    polarization. <i>Galaxies</i>. MDPI. <a href="https://doi.org/10.3390/galaxies6030076">https://doi.org/10.3390/galaxies6030076</a>'
  chicago: 'Heyl, Jeremy, and Ilaria Caiazzo. “Strongly Magnetized Sources: QED and
    X-Ray Polarization.” <i>Galaxies</i>. MDPI, 2018. <a href="https://doi.org/10.3390/galaxies6030076">https://doi.org/10.3390/galaxies6030076</a>.'
  ieee: 'J. Heyl and I. Caiazzo, “Strongly magnetized sources: QED and X-ray polarization,”
    <i>Galaxies</i>, vol. 6, no. 3. MDPI, 2018.'
  ista: 'Heyl J, Caiazzo I. 2018. Strongly magnetized sources: QED and X-ray polarization.
    Galaxies. 6(3), 76.'
  mla: 'Heyl, Jeremy, and Ilaria Caiazzo. “Strongly Magnetized Sources: QED and X-Ray
    Polarization.” <i>Galaxies</i>, vol. 6, no. 3, 76, MDPI, 2018, doi:<a href="https://doi.org/10.3390/galaxies6030076">10.3390/galaxies6030076</a>.'
  short: J. Heyl, I. Caiazzo, Galaxies 6 (2018).
date_created: 2024-03-26T10:38:46Z
date_published: 2018-07-21T00:00:00Z
date_updated: 2024-04-08T07:02:25Z
day: '21'
doi: 10.3390/galaxies6030076
extern: '1'
external_id:
  arxiv:
  - '1802.00358'
intvolume: '         6'
issue: '3'
keyword:
- Astronomy and Astrophysics
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3390/galaxies6030076
month: '07'
oa: 1
oa_version: Published Version
publication: Galaxies
publication_identifier:
  eissn:
  - 2075-4434
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Strongly magnetized sources: QED and X-ray polarization'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2018'
...
---
_id: '15236'
abstract:
- lang: eng
  text: 'Radio pulsars found in binary systems with short orbital periods are usually
    fast spinning as a consequence of recycling via mass transfer from their companion
    stars; this process is also thought to decrease the magnetic field of the neutron
    star being recycled. Here, we report on timing observations of the recently discovered
    binary PSR J1755−2550 and find that this pulsar is an exception: with a characteristic
    age of 2.1 Myr, it is relatively young; furthermore, with a spin period of 315 ms
    and a surface magnetic field strength at its poles of 0.88 × 1012 G, the pulsar
    shows no sign of having been recycled. Based on its timing and orbital characteristics,
    the pulsar either has a massive white dwarf (WD) or a neutron star (NS) companion.
    To distinguish between these two cases, we searched radio observations for a potential
    recycled pulsar companion and analysed archival optical data for a potential WD
    companion. Neither work returned conclusive detections. We apply population synthesis
    modelling and find that both solutions are roughly equally probable. Our population
    synthesis also predicts a minimum mass of 0.90 M⊙ for the companion star to PSR
    J1755−2550 and we simulate the systemic runaway velocities for the resulting WDNS
    systems which may merge and possibly produce Ca-rich supernovae. Whether PSR J1755−2550
    hosts a WD or a NS companion star, it is certainly a member of a rare subpopulation
    of binary radio pulsars.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: C
  full_name: Ng, C
  last_name: Ng
- first_name: M U
  full_name: Kruckow, M U
  last_name: Kruckow
- first_name: T M
  full_name: Tauris, T M
  last_name: Tauris
- first_name: A G
  full_name: Lyne, A G
  last_name: Lyne
- first_name: P C C
  full_name: Freire, P C C
  last_name: Freire
- first_name: A
  full_name: Ridolfi, A
  last_name: Ridolfi
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: J
  full_name: Heyl, J
  last_name: Heyl
- first_name: M
  full_name: Kramer, M
  last_name: Kramer
- first_name: A D
  full_name: Cameron, A D
  last_name: Cameron
- first_name: D J
  full_name: Champion, D J
  last_name: Champion
- first_name: B
  full_name: Stappers, B
  last_name: Stappers
citation:
  ama: 'Ng C, Kruckow MU, Tauris TM, et al. PSR J1755−2550: A young radio pulsar with
    a massive, compact companion. <i>Monthly Notices of the Royal Astronomical Society</i>.
    2018;476(4):4315-4326. doi:<a href="https://doi.org/10.1093/mnras/sty482">10.1093/mnras/sty482</a>'
  apa: 'Ng, C., Kruckow, M. U., Tauris, T. M., Lyne, A. G., Freire, P. C. C., Ridolfi,
    A., … Stappers, B. (2018). PSR J1755−2550: A young radio pulsar with a massive,
    compact companion. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford
    University Press. <a href="https://doi.org/10.1093/mnras/sty482">https://doi.org/10.1093/mnras/sty482</a>'
  chicago: 'Ng, C, M U Kruckow, T M Tauris, A G Lyne, P C C Freire, A Ridolfi, Ilaria
    Caiazzo, et al. “PSR J1755−2550: A Young Radio Pulsar with a Massive, Compact
    Companion.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University
    Press, 2018. <a href="https://doi.org/10.1093/mnras/sty482">https://doi.org/10.1093/mnras/sty482</a>.'
  ieee: 'C. Ng <i>et al.</i>, “PSR J1755−2550: A young radio pulsar with a massive,
    compact companion,” <i>Monthly Notices of the Royal Astronomical Society</i>,
    vol. 476, no. 4. Oxford University Press, pp. 4315–4326, 2018.'
  ista: 'Ng C, Kruckow MU, Tauris TM, Lyne AG, Freire PCC, Ridolfi A, Caiazzo I, Heyl
    J, Kramer M, Cameron AD, Champion DJ, Stappers B. 2018. PSR J1755−2550: A young
    radio pulsar with a massive, compact companion. Monthly Notices of the Royal Astronomical
    Society. 476(4), 4315–4326.'
  mla: 'Ng, C., et al. “PSR J1755−2550: A Young Radio Pulsar with a Massive, Compact
    Companion.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 476,
    no. 4, Oxford University Press, 2018, pp. 4315–26, doi:<a href="https://doi.org/10.1093/mnras/sty482">10.1093/mnras/sty482</a>.'
  short: C. Ng, M.U. Kruckow, T.M. Tauris, A.G. Lyne, P.C.C. Freire, A. Ridolfi, I.
    Caiazzo, J. Heyl, M. Kramer, A.D. Cameron, D.J. Champion, B. Stappers, Monthly
    Notices of the Royal Astronomical Society 476 (2018) 4315–4326.
date_created: 2024-03-26T10:39:05Z
date_published: 2018-02-23T00:00:00Z
date_updated: 2024-04-08T07:02:52Z
day: '23'
doi: 10.1093/mnras/sty482
extern: '1'
external_id:
  arxiv:
  - '1802.08248'
intvolume: '       476'
issue: '4'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1802.08248
month: '02'
oa: 1
oa_version: Preprint
page: 4315-4326
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'PSR J1755−2550: A young radio pulsar with a massive, compact companion'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 476
year: '2018'
...
---
_id: '15237'
abstract:
- lang: eng
  text: 'The effect of vacuum birefringence is one of the first predictions of quantum
    electrodynamics (QED): the presence of a charged Dirac field makes the vacuum
    birefringent when threaded by magnetic fields. This effect, extremely weak for
    terrestrial magnetic fields, becomes important for highly magnetized astrophysical
    objects, such as accreting black holes. In the X-ray regime, the polarization
    of photons traveling in the magnetosphere of a black hole is not frozen at emission
    but is changed by the local magnetic field. We show that, for photons traveling
    along the plane of the disk, where the field is expected to be partially organized,
    this results in a depolarization of the X-ray radiation. Because the amount of
    depolarization depends on the strength of the magnetic field, this effect can
    provide a way to probe the magnetic field in black-hole accretion disks and to
    study the role of magnetic fields in astrophysical accretion in general.'
article_number: '57'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
citation:
  ama: Caiazzo I, Heyl J. Probing black hole magnetic fields with QED. <i>Galaxies</i>.
    2018;6(2). doi:<a href="https://doi.org/10.3390/galaxies6020057">10.3390/galaxies6020057</a>
  apa: Caiazzo, I., &#38; Heyl, J. (2018). Probing black hole magnetic fields with
    QED. <i>Galaxies</i>. MDPI. <a href="https://doi.org/10.3390/galaxies6020057">https://doi.org/10.3390/galaxies6020057</a>
  chicago: Caiazzo, Ilaria, and Jeremy Heyl. “Probing Black Hole Magnetic Fields with
    QED.” <i>Galaxies</i>. MDPI, 2018. <a href="https://doi.org/10.3390/galaxies6020057">https://doi.org/10.3390/galaxies6020057</a>.
  ieee: I. Caiazzo and J. Heyl, “Probing black hole magnetic fields with QED,” <i>Galaxies</i>,
    vol. 6, no. 2. MDPI, 2018.
  ista: Caiazzo I, Heyl J. 2018. Probing black hole magnetic fields with QED. Galaxies.
    6(2), 57.
  mla: Caiazzo, Ilaria, and Jeremy Heyl. “Probing Black Hole Magnetic Fields with
    QED.” <i>Galaxies</i>, vol. 6, no. 2, 57, MDPI, 2018, doi:<a href="https://doi.org/10.3390/galaxies6020057">10.3390/galaxies6020057</a>.
  short: I. Caiazzo, J. Heyl, Galaxies 6 (2018).
date_created: 2024-03-26T10:39:26Z
date_published: 2018-05-24T00:00:00Z
date_updated: 2024-10-14T12:33:20Z
day: '24'
doi: 10.3390/galaxies6020057
extern: '1'
external_id:
  arxiv:
  - '1805.11018'
intvolume: '         6'
issue: '2'
keyword:
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3390/galaxies6020057
month: '05'
oa: 1
oa_version: Published Version
publication: Galaxies
publication_identifier:
  eissn:
  - 2075-4434
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Probing black hole magnetic fields with QED
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2018'
...
---
_id: '15238'
abstract:
- lang: eng
  text: 'In the next decade, x-ray polarimetry will open a new window on the high-energy
    Universe, as several missions that include an x-ray polarimeter are currently
    under development. Observations of the polarization of x rays coming from the
    accretion disks of stellar-mass and supermassive black holes are among the new
    polarimeters’ major objectives. In this paper, we show that these observations
    can be affected by the quantum electrodynamic (QED) effect of vacuum birefringence:
    after an x-ray photon is emitted from the accretion disk, its polarization changes
    as the photon travels through the accretion disk’s magnetosphere, as a result
    of the vacuum becoming birefringent in the presence of a magnetic field. We show
    that this effect can be important for black holes in the energy band of the upcoming
    polarimeters and has to be taken into account in a complete model of the x-ray
    polarization that we expect to detect from black-hole accretion disks, both for
    stellar mass and for supermassive black holes. We find that, for a chaotic magnetic
    field in the disk, QED can significantly decrease the linear polarization fraction
    of edge-on photons, depending on the spin of the hole and on the strength of the
    magnetic field. This effect can provide, for the first time, a direct way to probe
    the magnetic field strength close to the innermost stable orbit of black-hole
    accretion disks and to study the role of magnetic fields in astrophysical accretion
    in general.'
article_number: '083001'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
citation:
  ama: Caiazzo I, Heyl J. Vacuum birefringence and the x-ray polarization from black-hole
    accretion disks. <i>Physical Review D</i>. 2018;97(8). doi:<a href="https://doi.org/10.1103/physrevd.97.083001">10.1103/physrevd.97.083001</a>
  apa: Caiazzo, I., &#38; Heyl, J. (2018). Vacuum birefringence and the x-ray polarization
    from black-hole accretion disks. <i>Physical Review D</i>. American Physical Society.
    <a href="https://doi.org/10.1103/physrevd.97.083001">https://doi.org/10.1103/physrevd.97.083001</a>
  chicago: Caiazzo, Ilaria, and Jeremy Heyl. “Vacuum Birefringence and the X-Ray Polarization
    from Black-Hole Accretion Disks.” <i>Physical Review D</i>. American Physical
    Society, 2018. <a href="https://doi.org/10.1103/physrevd.97.083001">https://doi.org/10.1103/physrevd.97.083001</a>.
  ieee: I. Caiazzo and J. Heyl, “Vacuum birefringence and the x-ray polarization from
    black-hole accretion disks,” <i>Physical Review D</i>, vol. 97, no. 8. American
    Physical Society, 2018.
  ista: Caiazzo I, Heyl J. 2018. Vacuum birefringence and the x-ray polarization from
    black-hole accretion disks. Physical Review D. 97(8), 083001.
  mla: Caiazzo, Ilaria, and Jeremy Heyl. “Vacuum Birefringence and the X-Ray Polarization
    from Black-Hole Accretion Disks.” <i>Physical Review D</i>, vol. 97, no. 8, 083001,
    American Physical Society, 2018, doi:<a href="https://doi.org/10.1103/physrevd.97.083001">10.1103/physrevd.97.083001</a>.
  short: I. Caiazzo, J. Heyl, Physical Review D 97 (2018).
date_created: 2024-03-26T10:39:46Z
date_published: 2018-04-03T00:00:00Z
date_updated: 2024-10-14T12:33:32Z
day: '03'
doi: 10.1103/physrevd.97.083001
extern: '1'
external_id:
  arxiv:
  - '1803.03798'
intvolume: '        97'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1803.03798
month: '04'
oa: 1
oa_version: Preprint
publication: Physical Review D
publication_identifier:
  eissn:
  - 2470-0029
  issn:
  - 2470-0010
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Vacuum birefringence and the x-ray polarization from black-hole accretion disks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 97
year: '2018'
...
---
_id: '153'
abstract:
- lang: eng
  text: Cells migrating in multicellular organisms steadily traverse complex three-dimensional
    (3D) environments. To decipher the underlying cell biology, current experimental
    setups either use simplified 2D, tissue-mimetic 3D (e.g., collagen matrices) or
    in vivo environments. While only in vivo experiments are truly physiological,
    they do not allow for precise manipulation of environmental parameters. 2D in
    vitro experiments do allow mechanical and chemical manipulations, but increasing
    evidence demonstrates substantial differences of migratory mechanisms in 2D and
    3D. Here, we describe simple, robust, and versatile “pillar forests” to investigate
    cell migration in complex but fully controllable 3D environments. Pillar forests
    are polydimethylsiloxane-based setups, in which two closely adjacent surfaces
    are interconnected by arrays of micrometer-sized pillars. Changing the pillar
    shape, size, height and the inter-pillar distance precisely manipulates microenvironmental
    parameters (e.g., pore sizes, micro-geometry, micro-topology), while being easily
    combined with chemotactic cues, surface coatings, diverse cell types and advanced
    imaging techniques. Thus, pillar forests combine the advantages of 2D cell migration
    assays with the precise definition of 3D environmental parameters.
article_processing_charge: No
author:
- first_name: Jörg
  full_name: Renkawitz, Jörg
  id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
  last_name: Renkawitz
  orcid: 0000-0003-2856-3369
- first_name: Anne
  full_name: Reversat, Anne
  id: 35B76592-F248-11E8-B48F-1D18A9856A87
  last_name: Reversat
  orcid: 0000-0003-0666-8928
- first_name: Alexander F
  full_name: Leithner, Alexander F
  id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
  last_name: Leithner
  orcid: 0000-0002-1073-744X
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: 'Renkawitz J, Reversat A, Leithner AF, Merrin J, Sixt MK. Micro-engineered
    “pillar forests” to study cell migration in complex but controlled 3D environments.
    In: <i>Methods in Cell Biology</i>. Vol 147. Academic Press; 2018:79-91. doi:<a
    href="https://doi.org/10.1016/bs.mcb.2018.07.004">10.1016/bs.mcb.2018.07.004</a>'
  apa: Renkawitz, J., Reversat, A., Leithner, A. F., Merrin, J., &#38; Sixt, M. K.
    (2018). Micro-engineered “pillar forests” to study cell migration in complex but
    controlled 3D environments. In <i>Methods in Cell Biology</i> (Vol. 147, pp. 79–91).
    Academic Press. <a href="https://doi.org/10.1016/bs.mcb.2018.07.004">https://doi.org/10.1016/bs.mcb.2018.07.004</a>
  chicago: Renkawitz, Jörg, Anne Reversat, Alexander F Leithner, Jack Merrin, and
    Michael K Sixt. “Micro-Engineered ‘Pillar Forests’ to Study Cell Migration in
    Complex but Controlled 3D Environments.” In <i>Methods in Cell Biology</i>, 147:79–91.
    Academic Press, 2018. <a href="https://doi.org/10.1016/bs.mcb.2018.07.004">https://doi.org/10.1016/bs.mcb.2018.07.004</a>.
  ieee: J. Renkawitz, A. Reversat, A. F. Leithner, J. Merrin, and M. K. Sixt, “Micro-engineered
    ‘pillar forests’ to study cell migration in complex but controlled 3D environments,”
    in <i>Methods in Cell Biology</i>, vol. 147, Academic Press, 2018, pp. 79–91.
  ista: 'Renkawitz J, Reversat A, Leithner AF, Merrin J, Sixt MK. 2018.Micro-engineered
    “pillar forests” to study cell migration in complex but controlled 3D environments.
    In: Methods in Cell Biology. vol. 147, 79–91.'
  mla: Renkawitz, Jörg, et al. “Micro-Engineered ‘Pillar Forests’ to Study Cell Migration
    in Complex but Controlled 3D Environments.” <i>Methods in Cell Biology</i>, vol.
    147, Academic Press, 2018, pp. 79–91, doi:<a href="https://doi.org/10.1016/bs.mcb.2018.07.004">10.1016/bs.mcb.2018.07.004</a>.
  short: J. Renkawitz, A. Reversat, A.F. Leithner, J. Merrin, M.K. Sixt, in:, Methods
    in Cell Biology, Academic Press, 2018, pp. 79–91.
date_created: 2018-12-11T11:44:54Z
date_published: 2018-07-27T00:00:00Z
date_updated: 2025-07-10T11:51:09Z
day: '27'
department:
- _id: MiSi
- _id: NanoFab
doi: 10.1016/bs.mcb.2018.07.004
external_id:
  isi:
  - '000452412300006'
  pmid:
  - '30165964'
intvolume: '       147'
isi: 1
language:
- iso: eng
month: '07'
oa_version: None
page: 79 - 91
pmid: 1
publication: Methods in Cell Biology
publication_identifier:
  issn:
  - 0091-679X
publication_status: published
publisher: Academic Press
publist_id: '7768'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Micro-engineered “pillar forests” to study cell migration in complex but controlled
  3D environments
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 147
year: '2018'
...
---
_id: '154'
abstract:
- lang: eng
  text: We give a lower bound on the ground state energy of a system of two fermions
    of one species interacting with two fermions of another species via point interactions.
    We show that there is a critical mass ratio m2 ≈ 0.58 such that the system is
    stable, i.e., the energy is bounded from below, for m∈[m2,m2−1]. So far it was
    not known whether this 2 + 2 system exhibits a stable region at all or whether
    the formation of four-body bound states causes an unbounded spectrum for all mass
    ratios, similar to the Thomas effect. Our result gives further evidence for the
    stability of the more general N + M system.
acknowledgement: Open access funding provided by Austrian Science Fund (FWF).
article_number: '19'
article_processing_charge: No
article_type: original
author:
- first_name: Thomas
  full_name: Moser, Thomas
  id: 2B5FC9A4-F248-11E8-B48F-1D18A9856A87
  last_name: Moser
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Moser T, Seiringer R. Stability of the 2+2 fermionic system with point interactions.
    <i>Mathematical Physics Analysis and Geometry</i>. 2018;21(3). doi:<a href="https://doi.org/10.1007/s11040-018-9275-3">10.1007/s11040-018-9275-3</a>
  apa: Moser, T., &#38; Seiringer, R. (2018). Stability of the 2+2 fermionic system
    with point interactions. <i>Mathematical Physics Analysis and Geometry</i>. Springer.
    <a href="https://doi.org/10.1007/s11040-018-9275-3">https://doi.org/10.1007/s11040-018-9275-3</a>
  chicago: Moser, Thomas, and Robert Seiringer. “Stability of the 2+2 Fermionic System
    with Point Interactions.” <i>Mathematical Physics Analysis and Geometry</i>. Springer,
    2018. <a href="https://doi.org/10.1007/s11040-018-9275-3">https://doi.org/10.1007/s11040-018-9275-3</a>.
  ieee: T. Moser and R. Seiringer, “Stability of the 2+2 fermionic system with point
    interactions,” <i>Mathematical Physics Analysis and Geometry</i>, vol. 21, no.
    3. Springer, 2018.
  ista: Moser T, Seiringer R. 2018. Stability of the 2+2 fermionic system with point
    interactions. Mathematical Physics Analysis and Geometry. 21(3), 19.
  mla: Moser, Thomas, and Robert Seiringer. “Stability of the 2+2 Fermionic System
    with Point Interactions.” <i>Mathematical Physics Analysis and Geometry</i>, vol.
    21, no. 3, 19, Springer, 2018, doi:<a href="https://doi.org/10.1007/s11040-018-9275-3">10.1007/s11040-018-9275-3</a>.
  short: T. Moser, R. Seiringer, Mathematical Physics Analysis and Geometry 21 (2018).
date_created: 2018-12-11T11:44:55Z
date_published: 2018-09-01T00:00:00Z
date_updated: 2026-04-08T14:12:30Z
day: '01'
ddc:
- '530'
department:
- _id: RoSe
doi: 10.1007/s11040-018-9275-3
ec_funded: 1
external_id:
  isi:
  - '000439639700001'
file:
- access_level: open_access
  checksum: 411c4db5700d7297c9cd8ebc5dd29091
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-17T16:49:02Z
  date_updated: 2020-07-14T12:45:01Z
  file_id: '5729'
  file_name: 2018_MathPhysics_Moser.pdf
  file_size: 496973
  relation: main_file
file_date_updated: 2020-07-14T12:45:01Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '3'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P27533_N27
  name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
- _id: 3AC91DDA-15DF-11EA-824D-93A3E7B544D1
  call_identifier: FWF
  name: FWF Open Access Fund
publication: Mathematical Physics Analysis and Geometry
publication_identifier:
  eissn:
  - 1572-9656
  issn:
  - 1385-0172
publication_status: published
publisher: Springer
publist_id: '7767'
quality_controlled: '1'
related_material:
  record:
  - id: '52'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Stability of the 2+2 fermionic system with point interactions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2018'
...
---
_id: '155'
abstract:
- lang: eng
  text: There is currently significant interest in operating devices in the quantum
    regime, where their behaviour cannot be explained through classical mechanics.
    Quantum states, including entangled states, are fragile and easily disturbed by
    excessive thermal noise. Here we address the question of whether it is possible
    to create non-reciprocal devices that encourage the flow of thermal noise towards
    or away from a particular quantum device in a network. Our work makes use of the
    cascaded systems formalism to answer this question in the affirmative, showing
    how a three-port device can be used as an effective thermal transistor, and illustrates
    how this formalism maps onto an experimentally-realisable optomechanical system.
    Our results pave the way to more resilient quantum devices and to the use of thermal
    noise as a resource.
alternative_title:
- Proceedings of SPIE
article_number: 106721N
article_processing_charge: No
arxiv: 1
author:
- first_name: André
  full_name: Xuereb, André
  last_name: Xuereb
- first_name: Matteo
  full_name: Aquilina, Matteo
  last_name: Aquilina
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
citation:
  ama: 'Xuereb A, Aquilina M, Barzanjeh S. Routing thermal noise through quantum networks.
    In: Andrews DL, Ostendorf A, Bain AJ, Nunzi JM, eds. Vol 10672. SPIE; 2018. doi:<a
    href="https://doi.org/10.1117/12.2309928">10.1117/12.2309928</a>'
  apa: 'Xuereb, A., Aquilina, M., &#38; Barzanjeh, S. (2018). Routing thermal noise
    through quantum networks. In D. L. Andrews, A. Ostendorf, A. J. Bain, &#38; J.
    M. Nunzi (Eds.) (Vol. 10672). Presented at the SPIE: The international society
    for optical engineering, Strasbourg, France: SPIE. <a href="https://doi.org/10.1117/12.2309928">https://doi.org/10.1117/12.2309928</a>'
  chicago: Xuereb, André, Matteo Aquilina, and Shabir Barzanjeh. “Routing Thermal
    Noise through Quantum Networks.” edited by D L Andrews, A Ostendorf, A J Bain,
    and J M Nunzi, Vol. 10672. SPIE, 2018. <a href="https://doi.org/10.1117/12.2309928">https://doi.org/10.1117/12.2309928</a>.
  ieee: 'A. Xuereb, M. Aquilina, and S. Barzanjeh, “Routing thermal noise through
    quantum networks,” presented at the SPIE: The international society for optical
    engineering, Strasbourg, France, 2018, vol. 10672.'
  ista: 'Xuereb A, Aquilina M, Barzanjeh S. 2018. Routing thermal noise through quantum
    networks. SPIE: The international society for optical engineering, Proceedings
    of SPIE, vol. 10672, 106721N.'
  mla: Xuereb, André, et al. <i>Routing Thermal Noise through Quantum Networks</i>.
    Edited by D L Andrews et al., vol. 10672, 106721N, SPIE, 2018, doi:<a href="https://doi.org/10.1117/12.2309928">10.1117/12.2309928</a>.
  short: A. Xuereb, M. Aquilina, S. Barzanjeh, in:, D.L. Andrews, A. Ostendorf, A.J.
    Bain, J.M. Nunzi (Eds.), SPIE, 2018.
conference:
  end_date: 2018-04-26
  location: Strasbourg, France
  name: 'SPIE: The international society for optical engineering'
  start_date: 2018-04-22
date_created: 2018-12-11T11:44:55Z
date_published: 2018-05-04T00:00:00Z
date_updated: 2023-09-18T08:12:24Z
day: '04'
department:
- _id: JoFi
doi: 10.1117/12.2309928
editor:
- first_name: D L
  full_name: Andrews, D L
  last_name: Andrews
- first_name: A
  full_name: Ostendorf, A
  last_name: Ostendorf
- first_name: A J
  full_name: Bain, A J
  last_name: Bain
- first_name: J M
  full_name: Nunzi, J M
  last_name: Nunzi
external_id:
  arxiv:
  - '1806.01000'
  isi:
  - '000453298500019'
intvolume: '     10672'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1806.01000
month: '05'
oa: 1
oa_version: Preprint
publication_status: published
publisher: SPIE
publist_id: '7766'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Routing thermal noise through quantum networks
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 10672
year: '2018'
...
---
_id: '156'
abstract:
- lang: eng
  text: 'Imprecision in timing can sometimes be beneficial: Metric interval temporal
    logic (MITL), disabling the expression of punctuality constraints, was shown to
    translate to timed automata, yielding an elementary decision procedure. We show
    how this principle extends to other forms of dense-time specification using regular
    expressions. By providing a clean, automaton-based formal framework for non-punctual
    languages, we are able to recover and extend several results in timed systems.
    Metric interval regular expressions (MIRE) are introduced, providing regular expressions
    with non-singular duration constraints. We obtain that MIRE are expressively complete
    relative to a class of one-clock timed automata, which can be determinized using
    additional clocks. Metric interval dynamic logic (MIDL) is then defined using
    MIRE as temporal modalities. We show that MIDL generalizes known extensions of
    MITL, while translating to timed automata at comparable cost.'
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Ferrere, Thomas
  id: 40960E6E-F248-11E8-B48F-1D18A9856A87
  last_name: Ferrere
  orcid: 0000-0001-5199-3143
citation:
  ama: 'Ferrere T. The compound interest in relaxing punctuality. In: Vol 10951. Springer;
    2018:147-164. doi:<a href="https://doi.org/10.1007/978-3-319-95582-7_9">10.1007/978-3-319-95582-7_9</a>'
  apa: 'Ferrere, T. (2018). The compound interest in relaxing punctuality (Vol. 10951,
    pp. 147–164). Presented at the FM: Formal Methods, Oxford, UK: Springer. <a href="https://doi.org/10.1007/978-3-319-95582-7_9">https://doi.org/10.1007/978-3-319-95582-7_9</a>'
  chicago: Ferrere, Thomas. “The Compound Interest in Relaxing Punctuality,” 10951:147–64.
    Springer, 2018. <a href="https://doi.org/10.1007/978-3-319-95582-7_9">https://doi.org/10.1007/978-3-319-95582-7_9</a>.
  ieee: 'T. Ferrere, “The compound interest in relaxing punctuality,” presented at
    the FM: Formal Methods, Oxford, UK, 2018, vol. 10951, pp. 147–164.'
  ista: 'Ferrere T. 2018. The compound interest in relaxing punctuality. FM: Formal
    Methods, LNCS, vol. 10951, 147–164.'
  mla: Ferrere, Thomas. <i>The Compound Interest in Relaxing Punctuality</i>. Vol.
    10951, Springer, 2018, pp. 147–64, doi:<a href="https://doi.org/10.1007/978-3-319-95582-7_9">10.1007/978-3-319-95582-7_9</a>.
  short: T. Ferrere, in:, Springer, 2018, pp. 147–164.
conference:
  end_date: 2018-07-17
  location: Oxford, UK
  name: 'FM: Formal Methods'
  start_date: 2018-07-15
date_created: 2018-12-11T11:44:55Z
date_published: 2018-07-12T00:00:00Z
date_updated: 2025-07-10T11:51:10Z
day: '12'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-319-95582-7_9
external_id:
  isi:
  - '000489765800009'
file:
- access_level: open_access
  checksum: a045c213c42c445f1889326f8db82a0a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-09T06:22:41Z
  date_updated: 2020-10-09T06:22:41Z
  file_id: '8637'
  file_name: 2018_LNCS_Ferrere.pdf
  file_size: 485576
  relation: main_file
  success: 1
file_date_updated: 2020-10-09T06:22:41Z
has_accepted_license: '1'
intvolume: '     10951'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 147 - 164
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_status: published
publisher: Springer
publist_id: '7765'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The compound interest in relaxing punctuality
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10951
year: '2018'
...
---
_id: '157'
abstract:
- lang: eng
  text: 'Social dilemmas occur when incentives for individuals are misaligned with
    group interests 1-7 . According to the ''tragedy of the commons'', these misalignments
    can lead to overexploitation and collapse of public resources. The resulting behaviours
    can be analysed with the tools of game theory 8 . The theory of direct reciprocity
    9-15 suggests that repeated interactions can alleviate such dilemmas, but previous
    work has assumed that the public resource remains constant over time. Here we
    introduce the idea that the public resource is instead changeable and depends
    on the strategic choices of individuals. An intuitive scenario is that cooperation
    increases the public resource, whereas defection decreases it. Thus, cooperation
    allows the possibility of playing a more valuable game with higher payoffs, whereas
    defection leads to a less valuable game. We analyse this idea using the theory
    of stochastic games 16-19 and evolutionary game theory. We find that the dependence
    of the public resource on previous interactions can greatly enhance the propensity
    for cooperation. For these results, the interaction between reciprocity and payoff
    feedback is crucial: neither repeated interactions in a constant environment nor
    single interactions in a changing environment yield similar cooperation rates.
    Our framework shows which feedbacks between exploitation and environment - either
    naturally occurring or designed - help to overcome social dilemmas.'
acknowledgement: "European Research Council Start Grant 279307, Austrian Science Fund
  (FWF) grant P23499-N23, \r\nC.H. acknowledges support from the ISTFELLOW programme."
article_processing_charge: No
author:
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: Štepán
  full_name: Šimsa, Štepán
  last_name: Šimsa
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Hilbe C, Šimsa Š, Chatterjee K, Nowak M. Evolution of cooperation in stochastic
    games. <i>Nature</i>. 2018;559(7713):246-249. doi:<a href="https://doi.org/10.1038/s41586-018-0277-x">10.1038/s41586-018-0277-x</a>
  apa: Hilbe, C., Šimsa, Š., Chatterjee, K., &#38; Nowak, M. (2018). Evolution of
    cooperation in stochastic games. <i>Nature</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/s41586-018-0277-x">https://doi.org/10.1038/s41586-018-0277-x</a>
  chicago: Hilbe, Christian, Štepán Šimsa, Krishnendu Chatterjee, and Martin Nowak.
    “Evolution of Cooperation in Stochastic Games.” <i>Nature</i>. Nature Publishing
    Group, 2018. <a href="https://doi.org/10.1038/s41586-018-0277-x">https://doi.org/10.1038/s41586-018-0277-x</a>.
  ieee: C. Hilbe, Š. Šimsa, K. Chatterjee, and M. Nowak, “Evolution of cooperation
    in stochastic games,” <i>Nature</i>, vol. 559, no. 7713. Nature Publishing Group,
    pp. 246–249, 2018.
  ista: Hilbe C, Šimsa Š, Chatterjee K, Nowak M. 2018. Evolution of cooperation in
    stochastic games. Nature. 559(7713), 246–249.
  mla: Hilbe, Christian, et al. “Evolution of Cooperation in Stochastic Games.” <i>Nature</i>,
    vol. 559, no. 7713, Nature Publishing Group, 2018, pp. 246–49, doi:<a href="https://doi.org/10.1038/s41586-018-0277-x">10.1038/s41586-018-0277-x</a>.
  short: C. Hilbe, Š. Šimsa, K. Chatterjee, M. Nowak, Nature 559 (2018) 246–249.
date_created: 2018-12-11T11:44:56Z
date_published: 2018-07-04T00:00:00Z
date_updated: 2025-04-15T06:30:08Z
day: '04'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1038/s41586-018-0277-x
ec_funded: 1
external_id:
  isi:
  - '000438240900054'
file:
- access_level: open_access
  checksum: 011ab905cf9a410bc2b96f15174d654d
  content_type: application/pdf
  creator: dernst
  date_created: 2019-11-19T08:09:57Z
  date_updated: 2020-07-14T12:45:02Z
  file_id: '7049'
  file_name: 2018_Nature_Hilbe.pdf
  file_size: 2834442
  relation: main_file
file_date_updated: 2020-07-14T12:45:02Z
has_accepted_license: '1'
intvolume: '       559'
isi: 1
issue: '7713'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 246 - 249
project:
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '7764'
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/engineering-cooperation/
scopus_import: '1'
status: public
title: Evolution of cooperation in stochastic games
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 559
year: '2018'
...
---
_id: '158'
abstract:
- lang: eng
  text: 'The angiosperm seed is composed of three genetically distinct tissues: the
    diploid embryo that originates from the fertilized egg cell, the triploid endosperm
    that is produced from the fertilized central cell, and the maternal sporophytic
    integuments that develop into the seed coat1. At the onset of embryo development
    in Arabidopsis thaliana, the zygote divides asymmetrically, producing a small
    apical embryonic cell and a larger basal cell that connects the embryo to the
    maternal tissue2. The coordinated and synchronous development of the embryo and
    the surrounding integuments, and the alignment of their growth axes, suggest communication
    between maternal tissues and the embryo. In contrast to animals, however, where
    a network of maternal factors that direct embryo patterning have been identified3,4,
    only a few maternal mutations have been described to affect embryo development
    in plants5–7. Early embryo patterning in Arabidopsis requires accumulation of
    the phytohormone auxin in the apical cell by directed transport from the suspensor8–10.
    However, the origin of this auxin has remained obscure. Here we investigate the
    source of auxin for early embryogenesis and provide evidence that the mother plant
    coordinates seed development by supplying auxin to the early embryo from the integuments
    of the ovule. We show that auxin response increases in ovules after fertilization,
    due to upregulated auxin biosynthesis in the integuments, and this maternally
    produced auxin is required for correct embryo development.'
acknowledgement: This work was further supported by the Czech Science Foundation GACR
  (GA13-40637S) to J.F.;
article_processing_charge: No
author:
- first_name: Hélène
  full_name: Robert, Hélène
  last_name: Robert
- first_name: Chulmin
  full_name: Park, Chulmin
  last_name: Park
- first_name: Carla
  full_name: Gutièrrez, Carla
  last_name: Gutièrrez
- first_name: Barbara
  full_name: Wójcikowska, Barbara
  last_name: Wójcikowska
- first_name: Aleš
  full_name: Pěnčík, Aleš
  last_name: Pěnčík
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Junyi
  full_name: Chen, Junyi
  last_name: Chen
- first_name: Wim
  full_name: Grunewald, Wim
  last_name: Grunewald
- first_name: Thomas
  full_name: Dresselhaus, Thomas
  last_name: Dresselhaus
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Thomas
  full_name: Laux, Thomas
  last_name: Laux
citation:
  ama: Robert H, Park C, Gutièrrez C, et al. Maternal auxin supply contributes to
    early embryo patterning in Arabidopsis. <i>Nature Plants</i>. 2018;4(8):548-553.
    doi:<a href="https://doi.org/10.1038/s41477-018-0204-z">10.1038/s41477-018-0204-z</a>
  apa: Robert, H., Park, C., Gutièrrez, C., Wójcikowska, B., Pěnčík, A., Novák, O.,
    … Laux, T. (2018). Maternal auxin supply contributes to early embryo patterning
    in Arabidopsis. <i>Nature Plants</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/s41477-018-0204-z">https://doi.org/10.1038/s41477-018-0204-z</a>
  chicago: Robert, Hélène, Chulmin Park, Carla Gutièrrez, Barbara Wójcikowska, Aleš
    Pěnčík, Ondřej Novák, Junyi Chen, et al. “Maternal Auxin Supply Contributes to
    Early Embryo Patterning in Arabidopsis.” <i>Nature Plants</i>. Nature Publishing
    Group, 2018. <a href="https://doi.org/10.1038/s41477-018-0204-z">https://doi.org/10.1038/s41477-018-0204-z</a>.
  ieee: H. Robert <i>et al.</i>, “Maternal auxin supply contributes to early embryo
    patterning in Arabidopsis,” <i>Nature Plants</i>, vol. 4, no. 8. Nature Publishing
    Group, pp. 548–553, 2018.
  ista: Robert H, Park C, Gutièrrez C, Wójcikowska B, Pěnčík A, Novák O, Chen J, Grunewald
    W, Dresselhaus T, Friml J, Laux T. 2018. Maternal auxin supply contributes to
    early embryo patterning in Arabidopsis. Nature Plants. 4(8), 548–553.
  mla: Robert, Hélène, et al. “Maternal Auxin Supply Contributes to Early Embryo Patterning
    in Arabidopsis.” <i>Nature Plants</i>, vol. 4, no. 8, Nature Publishing Group,
    2018, pp. 548–53, doi:<a href="https://doi.org/10.1038/s41477-018-0204-z">10.1038/s41477-018-0204-z</a>.
  short: H. Robert, C. Park, C. Gutièrrez, B. Wójcikowska, A. Pěnčík, O. Novák, J.
    Chen, W. Grunewald, T. Dresselhaus, J. Friml, T. Laux, Nature Plants 4 (2018)
    548–553.
date_created: 2018-12-11T11:44:56Z
date_published: 2018-07-16T00:00:00Z
date_updated: 2025-04-15T07:48:03Z
day: '16'
department:
- _id: JiFr
doi: 10.1038/s41477-018-0204-z
ec_funded: 1
external_id:
  isi:
  - '000443861300011'
  pmid:
  - '30013211'
intvolume: '         4'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pubmed/30013211
month: '07'
oa: 1
oa_version: Submitted Version
page: 548 - 553
pmid: 1
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Nature Plants
publication_status: published
publisher: Nature Publishing Group
publist_id: '7763'
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/plant-mothers-talk-to-their-embryos-via-the-hormone-auxin/
scopus_import: '1'
status: public
title: Maternal auxin supply contributes to early embryo patterning in Arabidopsis
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 4
year: '2018'
...
---
_id: '159'
abstract:
- lang: eng
  text: L-type Ca2+ channels (LTCCs) play a crucial role in excitation-contraction
    coupling and release of hormones from secretory cells. They are targets of antihypertensive
    and antiarrhythmic drugs such as diltiazem. Here, we present a photoswitchable
    diltiazem, FHU-779, which can be used to reversibly block endogenous LTCCs by
    light. FHU-779 is as potent as diltiazem and can be used to place pancreatic β-cell
    function and cardiac activity under optical control.
article_processing_charge: No
article_type: original
author:
- first_name: Timm
  full_name: Fehrentz, Timm
  last_name: Fehrentz
- first_name: Florian
  full_name: Huber, Florian
  last_name: Huber
- first_name: Nina
  full_name: Hartrampf, Nina
  last_name: Hartrampf
- first_name: Tobias
  full_name: Bruegmann, Tobias
  last_name: Bruegmann
- first_name: James
  full_name: Frank, James
  last_name: Frank
- first_name: Nicholas
  full_name: Fine, Nicholas
  last_name: Fine
- first_name: Daniela
  full_name: Malan, Daniela
  last_name: Malan
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Denis
  full_name: Tikhonov, Denis
  last_name: Tikhonov
- first_name: Maritn
  full_name: Sumser, Maritn
  last_name: Sumser
- first_name: Philipp
  full_name: Sasse, Philipp
  last_name: Sasse
- first_name: David
  full_name: Hodson, David
  last_name: Hodson
- first_name: Boris
  full_name: Zhorov, Boris
  last_name: Zhorov
- first_name: Nikolaj
  full_name: Klocker, Nikolaj
  last_name: Klocker
- first_name: Dirk
  full_name: Trauner, Dirk
  last_name: Trauner
citation:
  ama: Fehrentz T, Huber F, Hartrampf N, et al. Optical control of L-type Ca2+ channels
    using a diltiazem photoswitch. <i>Nature Chemical Biology</i>. 2018;14(8):764-767.
    doi:<a href="https://doi.org/10.1038/s41589-018-0090-8">10.1038/s41589-018-0090-8</a>
  apa: Fehrentz, T., Huber, F., Hartrampf, N., Bruegmann, T., Frank, J., Fine, N.,
    … Trauner, D. (2018). Optical control of L-type Ca2+ channels using a diltiazem
    photoswitch. <i>Nature Chemical Biology</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/s41589-018-0090-8">https://doi.org/10.1038/s41589-018-0090-8</a>
  chicago: Fehrentz, Timm, Florian Huber, Nina Hartrampf, Tobias Bruegmann, James
    Frank, Nicholas Fine, Daniela Malan, et al. “Optical Control of L-Type Ca2+ Channels
    Using a Diltiazem Photoswitch.” <i>Nature Chemical Biology</i>. Nature Publishing
    Group, 2018. <a href="https://doi.org/10.1038/s41589-018-0090-8">https://doi.org/10.1038/s41589-018-0090-8</a>.
  ieee: T. Fehrentz <i>et al.</i>, “Optical control of L-type Ca2+ channels using
    a diltiazem photoswitch,” <i>Nature Chemical Biology</i>, vol. 14, no. 8. Nature
    Publishing Group, pp. 764–767, 2018.
  ista: Fehrentz T, Huber F, Hartrampf N, Bruegmann T, Frank J, Fine N, Malan D, Danzl
    JG, Tikhonov D, Sumser M, Sasse P, Hodson D, Zhorov B, Klocker N, Trauner D. 2018.
    Optical control of L-type Ca2+ channels using a diltiazem photoswitch. Nature
    Chemical Biology. 14(8), 764–767.
  mla: Fehrentz, Timm, et al. “Optical Control of L-Type Ca2+ Channels Using a Diltiazem
    Photoswitch.” <i>Nature Chemical Biology</i>, vol. 14, no. 8, Nature Publishing
    Group, 2018, pp. 764–67, doi:<a href="https://doi.org/10.1038/s41589-018-0090-8">10.1038/s41589-018-0090-8</a>.
  short: T. Fehrentz, F. Huber, N. Hartrampf, T. Bruegmann, J. Frank, N. Fine, D.
    Malan, J.G. Danzl, D. Tikhonov, M. Sumser, P. Sasse, D. Hodson, B. Zhorov, N.
    Klocker, D. Trauner, Nature Chemical Biology 14 (2018) 764–767.
date_created: 2018-12-11T11:44:56Z
date_published: 2018-07-16T00:00:00Z
date_updated: 2023-09-13T09:36:35Z
day: '16'
ddc:
- '570'
department:
- _id: JoDa
doi: 10.1038/s41589-018-0090-8
external_id:
  isi:
  - '000438970200010'
file:
- access_level: open_access
  checksum: d42935094ec845f54a0688bf12986d62
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-14T12:14:09Z
  date_updated: 2020-07-14T12:45:03Z
  file_id: '7832'
  file_name: 2018_NatureChemicalBiology_Fehrentz.pdf
  file_size: 6321000
  relation: main_file
file_date_updated: 2020-07-14T12:45:03Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '8'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 764 - 767
publication: Nature Chemical Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '7762'
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41589-021-00744-3
scopus_import: '1'
status: public
title: Optical control of L-type Ca2+ channels using a diltiazem photoswitch
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 14
year: '2018'
...
---
_id: '16'
abstract:
- lang: eng
  text: We report quantitative evidence of mixing-layer elastic instability in a viscoelastic
    fluid flow between two widely spaced obstacles hindering a channel flow at Re
    1 and Wi 1. Two mixing layers with nonuniform shear velocity profiles are formed
    in the region between the obstacles. The mixing-layer instability arises in the
    vicinity of an inflection point on the shear velocity profile with a steep variation
    in the elastic stress. The instability results in an intermittent appearance of
    small vortices in the mixing layers and an amplification of spatiotemporal averaged
    vorticity in the elastic turbulence regime. The latter is characterized through
    scaling of friction factor with Wi and both pressure and velocity spectra. Furthermore,
    the observations reported provide improved understanding of the stability of the
    mixing layer in a viscoelastic fluid at large elasticity, i.e., Wi 1 and Re 1
    and oppose the current view of suppression of vorticity solely by polymer additives.
acknowledgement: This work was partially supported by the Israel Science Foundation
  (ISF; Grant No. 882/15) and the Binational USA-Israel Foundation (BSF; Grant No.
  2016145).
article_number: '103303'
article_processing_charge: No
article_type: original
author:
- first_name: Atul
  full_name: Varshney, Atul
  id: 2A2006B2-F248-11E8-B48F-1D18A9856A87
  last_name: Varshney
  orcid: 0000-0002-3072-5999
- first_name: Victor
  full_name: Steinberg, Victor
  last_name: Steinberg
citation:
  ama: Varshney A, Steinberg V. Mixing layer instability and vorticity amplification
    in a creeping viscoelastic flow. <i>Physical Review Fluids</i>. 2018;3(10). doi:<a
    href="https://doi.org/10.1103/PhysRevFluids.3.103303">10.1103/PhysRevFluids.3.103303</a>
  apa: Varshney, A., &#38; Steinberg, V. (2018). Mixing layer instability and vorticity
    amplification in a creeping viscoelastic flow. <i>Physical Review Fluids</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevFluids.3.103303">https://doi.org/10.1103/PhysRevFluids.3.103303</a>
  chicago: Varshney, Atul, and Victor Steinberg. “Mixing Layer Instability and Vorticity
    Amplification in a Creeping Viscoelastic Flow.” <i>Physical Review Fluids</i>.
    American Physical Society, 2018. <a href="https://doi.org/10.1103/PhysRevFluids.3.103303">https://doi.org/10.1103/PhysRevFluids.3.103303</a>.
  ieee: A. Varshney and V. Steinberg, “Mixing layer instability and vorticity amplification
    in a creeping viscoelastic flow,” <i>Physical Review Fluids</i>, vol. 3, no. 10.
    American Physical Society, 2018.
  ista: Varshney A, Steinberg V. 2018. Mixing layer instability and vorticity amplification
    in a creeping viscoelastic flow. Physical Review Fluids. 3(10), 103303.
  mla: Varshney, Atul, and Victor Steinberg. “Mixing Layer Instability and Vorticity
    Amplification in a Creeping Viscoelastic Flow.” <i>Physical Review Fluids</i>,
    vol. 3, no. 10, 103303, American Physical Society, 2018, doi:<a href="https://doi.org/10.1103/PhysRevFluids.3.103303">10.1103/PhysRevFluids.3.103303</a>.
  short: A. Varshney, V. Steinberg, Physical Review Fluids 3 (2018).
date_created: 2018-12-11T11:44:10Z
date_published: 2018-10-16T00:00:00Z
date_updated: 2025-04-14T07:44:02Z
day: '16'
ddc:
- '532'
department:
- _id: BjHo
doi: 10.1103/PhysRevFluids.3.103303
ec_funded: 1
external_id:
  isi:
  - '000447469200001'
file:
- access_level: open_access
  checksum: 7fc0a2322214d1c04debef36d5bf2e8a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:56Z
  date_updated: 2020-07-14T12:45:04Z
  file_id: '5043'
  file_name: IST-2018-1062-v1+1_PhysRevFluids.3.103303.pdf
  file_size: 1838431
  relation: main_file
file_date_updated: 2020-07-14T12:45:04Z
has_accepted_license: '1'
intvolume: '         3'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Physical Review Fluids
publication_status: published
publisher: American Physical Society
publist_id: '8039'
pubrep_id: '1062'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mixing layer instability and vorticity amplification in a creeping viscoelastic
  flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 3
year: '2018'
...
---
_id: '160'
abstract:
- lang: eng
  text: We present layered concurrent programs, a compact and expressive notation
    for specifying refinement proofs of concurrent programs. A layered concurrent
    program specifies a sequence of connected concurrent programs, from most concrete
    to most abstract, such that common parts of different programs are written exactly
    once. These programs are expressed in the ordinary syntax of imperative concurrent
    programs using gated atomic actions, sequencing, choice, and (recursive) procedure
    calls. Each concurrent program is automatically extracted from the layered program.
    We reduce refinement to the safety of a sequence of concurrent checker programs,
    one each to justify the connection between every two consecutive concurrent programs.
    These checker programs are also automatically extracted from the layered program.
    Layered concurrent programs have been implemented in the CIVL verifier which has
    been successfully used for the verification of several complex concurrent programs.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Bernhard
  full_name: Kragl, Bernhard
  id: 320FC952-F248-11E8-B48F-1D18A9856A87
  last_name: Kragl
  orcid: 0000-0001-7745-9117
- first_name: Shaz
  full_name: Qadeer, Shaz
  last_name: Qadeer
citation:
  ama: 'Kragl B, Qadeer S. Layered Concurrent Programs. In: Vol 10981. Springer; 2018:79-102.
    doi:<a href="https://doi.org/10.1007/978-3-319-96145-3_5">10.1007/978-3-319-96145-3_5</a>'
  apa: 'Kragl, B., &#38; Qadeer, S. (2018). Layered Concurrent Programs (Vol. 10981,
    pp. 79–102). Presented at the CAV: Computer Aided Verification, Oxford, UK: Springer.
    <a href="https://doi.org/10.1007/978-3-319-96145-3_5">https://doi.org/10.1007/978-3-319-96145-3_5</a>'
  chicago: Kragl, Bernhard, and Shaz Qadeer. “Layered Concurrent Programs,” 10981:79–102.
    Springer, 2018. <a href="https://doi.org/10.1007/978-3-319-96145-3_5">https://doi.org/10.1007/978-3-319-96145-3_5</a>.
  ieee: 'B. Kragl and S. Qadeer, “Layered Concurrent Programs,” presented at the CAV:
    Computer Aided Verification, Oxford, UK, 2018, vol. 10981, pp. 79–102.'
  ista: 'Kragl B, Qadeer S. 2018. Layered Concurrent Programs. CAV: Computer Aided
    Verification, LNCS, vol. 10981, 79–102.'
  mla: Kragl, Bernhard, and Shaz Qadeer. <i>Layered Concurrent Programs</i>. Vol.
    10981, Springer, 2018, pp. 79–102, doi:<a href="https://doi.org/10.1007/978-3-319-96145-3_5">10.1007/978-3-319-96145-3_5</a>.
  short: B. Kragl, S. Qadeer, in:, Springer, 2018, pp. 79–102.
conference:
  end_date: 2018-07-17
  location: Oxford, UK
  name: 'CAV: Computer Aided Verification'
  start_date: 2018-07-14
date_created: 2018-12-11T11:44:57Z
date_published: 2018-07-18T00:00:00Z
date_updated: 2026-04-08T07:23:52Z
day: '18'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-319-96145-3_5
external_id:
  isi:
  - '000491481600005'
file:
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  file_id: '5705'
  file_name: 2018_LNCS_Kragl.pdf
  file_size: 1603844
  relation: main_file
file_date_updated: 2020-07-14T12:45:04Z
has_accepted_license: '1'
intvolume: '     10981'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 79 - 102
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_status: published
publisher: Springer
publist_id: '7761'
quality_controlled: '1'
related_material:
  record:
  - id: '8332'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Layered Concurrent Programs
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 10981
year: '2018'
...
---
_id: '161'
abstract:
- lang: eng
  text: 'Which properties of metabolic networks can be derived solely from stoichiometry?
    Predictive results have been obtained by flux balance analysis (FBA), by postulating
    that cells set metabolic fluxes to maximize growth rate. Here we consider a generalization
    of FBA to single-cell level using maximum entropy modeling, which we extend and
    test experimentally. Specifically, we define for Escherichia coli metabolism a
    flux distribution that yields the experimental growth rate: the model, containing
    FBA as a limit, provides a better match to measured fluxes and it makes a wide
    range of predictions: on flux variability, regulation, and correlations; on the
    relative importance of stoichiometry vs. optimization; on scaling relations for
    growth rate distributions. We validate the latter here with single-cell data at
    different sub-inhibitory antibiotic concentrations. The model quantifies growth
    optimization as emerging from the interplay of competitive dynamics in the population
    and regulation of metabolism at the level of single cells.'
article_number: '2988'
article_processing_charge: No
author:
- first_name: Daniele
  full_name: De Martino, Daniele
  id: 3FF5848A-F248-11E8-B48F-1D18A9856A87
  last_name: De Martino
  orcid: 0000-0002-5214-4706
- first_name: Andersson Anna
  full_name: Mc, Andersson Anna
  last_name: Mc
- first_name: Tobias
  full_name: Bergmiller, Tobias
  id: 2C471CFA-F248-11E8-B48F-1D18A9856A87
  last_name: Bergmiller
  orcid: 0000-0001-5396-4346
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: Gasper
  full_name: Tkacik, Gasper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkacik
  orcid: 0000-0002-6699-1455
citation:
  ama: De Martino D, Mc AA, Bergmiller T, Guet CC, Tkačik G. Statistical mechanics
    for metabolic networks during steady state growth. <i>Nature Communications</i>.
    2018;9(1). doi:<a href="https://doi.org/10.1038/s41467-018-05417-9">10.1038/s41467-018-05417-9</a>
  apa: De Martino, D., Mc, A. A., Bergmiller, T., Guet, C. C., &#38; Tkačik, G. (2018).
    Statistical mechanics for metabolic networks during steady state growth. <i>Nature
    Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-018-05417-9">https://doi.org/10.1038/s41467-018-05417-9</a>
  chicago: De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet,
    and Gašper Tkačik. “Statistical Mechanics for Metabolic Networks during Steady
    State Growth.” <i>Nature Communications</i>. Springer Nature, 2018. <a href="https://doi.org/10.1038/s41467-018-05417-9">https://doi.org/10.1038/s41467-018-05417-9</a>.
  ieee: D. De Martino, A. A. Mc, T. Bergmiller, C. C. Guet, and G. Tkačik, “Statistical
    mechanics for metabolic networks during steady state growth,” <i>Nature Communications</i>,
    vol. 9, no. 1. Springer Nature, 2018.
  ista: De Martino D, Mc AA, Bergmiller T, Guet CC, Tkačik G. 2018. Statistical mechanics
    for metabolic networks during steady state growth. Nature Communications. 9(1),
    2988.
  mla: De Martino, Daniele, et al. “Statistical Mechanics for Metabolic Networks during
    Steady State Growth.” <i>Nature Communications</i>, vol. 9, no. 1, 2988, Springer
    Nature, 2018, doi:<a href="https://doi.org/10.1038/s41467-018-05417-9">10.1038/s41467-018-05417-9</a>.
  short: D. De Martino, A.A. Mc, T. Bergmiller, C.C. Guet, G. Tkačik, Nature Communications
    9 (2018).
date_created: 2018-12-11T11:44:57Z
date_published: 2018-07-30T00:00:00Z
date_updated: 2025-04-15T06:50:08Z
day: '30'
ddc:
- '570'
department:
- _id: GaTk
- _id: CaGu
doi: 10.1038/s41467-018-05417-9
ec_funded: 1
external_id:
  isi:
  - '000440149300021'
file:
- access_level: open_access
  checksum: 3ba7ab27b27723c7dcf633e8fc1f8f18
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-17T16:44:28Z
  date_updated: 2020-07-14T12:45:06Z
  file_id: '5728'
  file_name: 2018_NatureComm_DeMartino.pdf
  file_size: 1043205
  relation: main_file
file_date_updated: 2020-07-14T12:45:06Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 254E9036-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P28844-B27
  name: Biophysics of information processing in gene regulation
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Nature Communications
publication_status: published
publisher: Springer Nature
publist_id: '7760'
quality_controlled: '1'
related_material:
  record:
  - id: '5587'
    relation: popular_science
    status: public
scopus_import: '1'
status: public
title: Statistical mechanics for metabolic networks during steady state growth
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 9
year: '2018'
...
---
_id: '162'
abstract:
- lang: eng
  text: 'Facial shape is the basis for facial recognition and categorization. Facial
    features reflect the underlying geometry of the skeletal structures. Here, we
    reveal that cartilaginous nasal capsule (corresponding to upper jaw and face)
    is shaped by signals generated by neural structures: brain and olfactory epithelium.
    Brain-derived Sonic Hedgehog (SHH) enables the induction of nasal septum and posterior
    nasal capsule, whereas the formation of a capsule roof is controlled by signals
    from the olfactory epithelium. Unexpectedly, the cartilage of the nasal capsule
    turned out to be important for shaping membranous facial bones during development.
    This suggests that conserved neurosensory structures could benefit from protection
    and have evolved signals inducing cranial cartilages encasing them. Experiments
    with mutant mice revealed that the genomic regulatory regions controlling production
    of SHH in the nervous system contribute to facial cartilage morphogenesis, which
    might be a mechanism responsible for the adaptive evolution of animal faces and
    snouts.'
article_number: e34465
article_processing_charge: No
author:
- first_name: Marketa
  full_name: Kaucka, Marketa
  last_name: Kaucka
- first_name: Julian
  full_name: Petersen, Julian
  last_name: Petersen
- first_name: Marketa
  full_name: Tesarova, Marketa
  last_name: Tesarova
- first_name: Bara
  full_name: Szarowska, Bara
  last_name: Szarowska
- first_name: Maria
  full_name: Kastriti, Maria
  last_name: Kastriti
- first_name: Meng
  full_name: Xie, Meng
  last_name: Xie
- first_name: Anna
  full_name: Kicheva, Anna
  id: 3959A2A0-F248-11E8-B48F-1D18A9856A87
  last_name: Kicheva
  orcid: 0000-0003-4509-4998
- first_name: Karl
  full_name: Annusver, Karl
  last_name: Annusver
- first_name: Maria
  full_name: Kasper, Maria
  last_name: Kasper
- first_name: Orsolya
  full_name: Symmons, Orsolya
  last_name: Symmons
- first_name: Leslie
  full_name: Pan, Leslie
  last_name: Pan
- first_name: Francois
  full_name: Spitz, Francois
  last_name: Spitz
- first_name: Jozef
  full_name: Kaiser, Jozef
  last_name: Kaiser
- first_name: Maria
  full_name: Hovorakova, Maria
  last_name: Hovorakova
- first_name: Tomas
  full_name: Zikmund, Tomas
  last_name: Zikmund
- first_name: Kazunori
  full_name: Sunadome, Kazunori
  last_name: Sunadome
- first_name: Michael P
  full_name: Matise, Michael P
  last_name: Matise
- first_name: Hui
  full_name: Wang, Hui
  last_name: Wang
- first_name: Ulrika
  full_name: Marklund, Ulrika
  last_name: Marklund
- first_name: Hind
  full_name: Abdo, Hind
  last_name: Abdo
- first_name: Patrik
  full_name: Ernfors, Patrik
  last_name: Ernfors
- first_name: Pascal
  full_name: Maire, Pascal
  last_name: Maire
- first_name: Maud
  full_name: Wurmser, Maud
  last_name: Wurmser
- first_name: Andrei S
  full_name: Chagin, Andrei S
  last_name: Chagin
- first_name: Kaj
  full_name: Fried, Kaj
  last_name: Fried
- first_name: Igor
  full_name: Adameyko, Igor
  last_name: Adameyko
citation:
  ama: Kaucka M, Petersen J, Tesarova M, et al. Signals from the brain and olfactory
    epithelium control shaping of the mammalian nasal capsule cartilage. <i>eLife</i>.
    2018;7. doi:<a href="https://doi.org/10.7554/eLife.34465">10.7554/eLife.34465</a>
  apa: Kaucka, M., Petersen, J., Tesarova, M., Szarowska, B., Kastriti, M., Xie, M.,
    … Adameyko, I. (2018). Signals from the brain and olfactory epithelium control
    shaping of the mammalian nasal capsule cartilage. <i>ELife</i>. eLife Sciences
    Publications. <a href="https://doi.org/10.7554/eLife.34465">https://doi.org/10.7554/eLife.34465</a>
  chicago: Kaucka, Marketa, Julian Petersen, Marketa Tesarova, Bara Szarowska, Maria
    Kastriti, Meng Xie, Anna Kicheva, et al. “Signals from the Brain and Olfactory
    Epithelium Control Shaping of the Mammalian Nasal Capsule Cartilage.” <i>ELife</i>.
    eLife Sciences Publications, 2018. <a href="https://doi.org/10.7554/eLife.34465">https://doi.org/10.7554/eLife.34465</a>.
  ieee: M. Kaucka <i>et al.</i>, “Signals from the brain and olfactory epithelium
    control shaping of the mammalian nasal capsule cartilage,” <i>eLife</i>, vol.
    7. eLife Sciences Publications, 2018.
  ista: Kaucka M, Petersen J, Tesarova M, Szarowska B, Kastriti M, Xie M, Kicheva
    A, Annusver K, Kasper M, Symmons O, Pan L, Spitz F, Kaiser J, Hovorakova M, Zikmund
    T, Sunadome K, Matise MP, Wang H, Marklund U, Abdo H, Ernfors P, Maire P, Wurmser
    M, Chagin AS, Fried K, Adameyko I. 2018. Signals from the brain and olfactory
    epithelium control shaping of the mammalian nasal capsule cartilage. eLife. 7,
    e34465.
  mla: Kaucka, Marketa, et al. “Signals from the Brain and Olfactory Epithelium Control
    Shaping of the Mammalian Nasal Capsule Cartilage.” <i>ELife</i>, vol. 7, e34465,
    eLife Sciences Publications, 2018, doi:<a href="https://doi.org/10.7554/eLife.34465">10.7554/eLife.34465</a>.
  short: M. Kaucka, J. Petersen, M. Tesarova, B. Szarowska, M. Kastriti, M. Xie, A.
    Kicheva, K. Annusver, M. Kasper, O. Symmons, L. Pan, F. Spitz, J. Kaiser, M. Hovorakova,
    T. Zikmund, K. Sunadome, M.P. Matise, H. Wang, U. Marklund, H. Abdo, P. Ernfors,
    P. Maire, M. Wurmser, A.S. Chagin, K. Fried, I. Adameyko, ELife 7 (2018).
date_created: 2018-12-11T11:44:57Z
date_published: 2018-06-13T00:00:00Z
date_updated: 2025-04-14T07:27:30Z
day: '13'
ddc:
- '571'
department:
- _id: AnKi
doi: 10.7554/eLife.34465
ec_funded: 1
external_id:
  isi:
  - '000436227500001'
file:
- access_level: open_access
  checksum: da2378cdcf6b5461dcde194e4d608343
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-17T16:41:58Z
  date_updated: 2020-07-14T12:45:07Z
  file_id: '5727'
  file_name: 2018_eLife_Kaucka.pdf
  file_size: 9816484
  relation: main_file
file_date_updated: 2020-07-14T12:45:07Z
has_accepted_license: '1'
intvolume: '         7'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: B6FC0238-B512-11E9-945C-1524E6697425
  call_identifier: H2020
  grant_number: '680037'
  name: Coordination of Patterning And Growth In the Spinal Cord
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '7759'
quality_controlled: '1'
related_material:
  record:
  - id: '9838'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Signals from the brain and olfactory epithelium control shaping of the mammalian
  nasal capsule cartilage
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7
year: '2018'
...
---
_id: '163'
abstract:
- lang: eng
  text: For ultrafast fixation of biological samples to avoid artifacts, high-pressure
    freezing (HPF) followed by freeze substitution (FS) is preferred over chemical
    fixation at room temperature. After HPF, samples are maintained at low temperature
    during dehydration and fixation, while avoiding damaging recrystallization. This
    is a notoriously slow process. McDonald and Webb demonstrated, in 2011, that sample
    agitation during FS dramatically reduces the necessary time. Then, in 2015, we
    (H.G. and S.R.) introduced an agitation module into the cryochamber of an automated
    FS unit and demonstrated that the preparation of algae could be shortened from
    days to a couple of hours. We argued that variability in the processing, reproducibility,
    and safety issues are better addressed using automated FS units. For dissemination,
    we started low-cost manufacturing of agitation modules for two of the most widely
    used FS units, the Automatic Freeze Substitution Systems, AFS(1) and AFS2, from
    Leica Microsystems, using three dimensional (3D)-printing of the major components.
    To test them, several labs independently used the modules on a wide variety of
    specimens that had previously been processed by manual agitation, or without agitation.
    We demonstrate that automated processing with sample agitation saves time, increases
    flexibility with respect to sample requirements and protocols, and produces data
    of at least as good quality as other approaches.
article_processing_charge: No
article_type: original
author:
- first_name: Siegfried
  full_name: Reipert, Siegfried
  last_name: Reipert
- first_name: Helmuth
  full_name: Goldammer, Helmuth
  last_name: Goldammer
- first_name: Christine
  full_name: Richardson, Christine
  last_name: Richardson
- first_name: Martin
  full_name: Goldberg, Martin
  last_name: Goldberg
- first_name: Timothy
  full_name: Hawkins, Timothy
  last_name: Hawkins
- first_name: Elena
  full_name: Hollergschwandtner, Elena
  id: 3C054040-F248-11E8-B48F-1D18A9856A87
  last_name: Hollergschwandtner
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Sebastian
  full_name: Antreich, Sebastian
  last_name: Antreich
- first_name: York
  full_name: Stierhof, York
  last_name: Stierhof
citation:
  ama: 'Reipert S, Goldammer H, Richardson C, et al. Agitation modules: Flexible means
    to accelerate automated freeze substitution. <i>Journal of Histochemistry and
    Cytochemistry</i>. 2018;66(12):903-921. doi:<a href="https://doi.org/10.1369/0022155418786698">10.1369/0022155418786698</a>'
  apa: 'Reipert, S., Goldammer, H., Richardson, C., Goldberg, M., Hawkins, T., Saeckl,
    E., … Stierhof, Y. (2018). Agitation modules: Flexible means to accelerate automated
    freeze substitution. <i>Journal of Histochemistry and Cytochemistry</i>. SAGE
    Publications. <a href="https://doi.org/10.1369/0022155418786698">https://doi.org/10.1369/0022155418786698</a>'
  chicago: 'Reipert, Siegfried, Helmuth Goldammer, Christine Richardson, Martin Goldberg,
    Timothy Hawkins, Elena Saeckl, Walter Kaufmann, Sebastian Antreich, and York Stierhof.
    “Agitation Modules: Flexible Means to Accelerate Automated Freeze Substitution.”
    <i>Journal of Histochemistry and Cytochemistry</i>. SAGE Publications, 2018. <a
    href="https://doi.org/10.1369/0022155418786698">https://doi.org/10.1369/0022155418786698</a>.'
  ieee: 'S. Reipert <i>et al.</i>, “Agitation modules: Flexible means to accelerate
    automated freeze substitution,” <i>Journal of Histochemistry and Cytochemistry</i>,
    vol. 66, no. 12. SAGE Publications, pp. 903–921, 2018.'
  ista: 'Reipert S, Goldammer H, Richardson C, Goldberg M, Hawkins T, Saeckl E, Kaufmann
    W, Antreich S, Stierhof Y. 2018. Agitation modules: Flexible means to accelerate
    automated freeze substitution. Journal of Histochemistry and Cytochemistry. 66(12),
    903–921.'
  mla: 'Reipert, Siegfried, et al. “Agitation Modules: Flexible Means to Accelerate
    Automated Freeze Substitution.” <i>Journal of Histochemistry and Cytochemistry</i>,
    vol. 66, no. 12, SAGE Publications, 2018, pp. 903–21, doi:<a href="https://doi.org/10.1369/0022155418786698">10.1369/0022155418786698</a>.'
  short: S. Reipert, H. Goldammer, C. Richardson, M. Goldberg, T. Hawkins, E. Saeckl,
    W. Kaufmann, S. Antreich, Y. Stierhof, Journal of Histochemistry and Cytochemistry
    66 (2018) 903–921.
date_created: 2018-12-11T11:44:57Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2026-06-18T17:50:00Z
day: '01'
ddc:
- '570'
department:
- _id: RySh
- _id: EM-Fac
doi: 10.1369/0022155418786698
external_id:
  isi:
  - '000452277700005'
  pmid:
  - '29969056'
intvolume: '        66'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1369/0022155418786698
month: '12'
oa: 1
oa_version: Published Version
page: 903-921
pmid: 1
publication: Journal of Histochemistry and Cytochemistry
publication_identifier:
  issn:
  - 0022-1554
publication_status: published
publisher: SAGE Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Agitation modules: Flexible means to accelerate automated freeze substitution'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 66
year: '2018'
...
