---
_id: '18279'
abstract:
- lang: eng
text: We consider the tasks of representing, analyzing and manipulating maps between
shapes. We model maps as densities over the product manifold of the input shapes;
these densities can be treated as scalar functions and therefore are manipulable
using the language of signal processing on manifolds. Being a manifold itself,
the product space endows the set of maps with a geometry of its own, which we
exploit to define map operations in the spectral domain. To apply these ideas
in practice, we introduce localized spectral analysis of the product manifold
as a novel tool for map processing.
article_processing_charge: No
author:
- first_name: E.
full_name: Rodola, E.
last_name: Rodola
- first_name: Z.
full_name: Lähner, Z.
last_name: Lähner
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
- first_name: M. M.
full_name: Bronstein, M. M.
last_name: Bronstein
- first_name: J.
full_name: Solomon, J.
last_name: Solomon
citation:
ama: Rodola E, Lähner Z, Bronstein AM, Bronstein MM, Solomon J. Functional Maps
on Product Manifolds. The Eurographics Association; 2018. doi:10.2312/SGP.20181182
apa: Rodola, E., Lähner, Z., Bronstein, A. M., Bronstein, M. M., & Solomon,
J. (2018). Functional maps on product manifolds. Symposium on Geometry
Processing. The Eurographics Association. https://doi.org/10.2312/SGP.20181182
chicago: Rodola, E., Z. Lähner, Alex M. Bronstein, M. M. Bronstein, and J. Solomon.
Functional Maps on Product Manifolds. Symposium on Geometry Processing.
The Eurographics Association, 2018. https://doi.org/10.2312/SGP.20181182.
ieee: E. Rodola, Z. Lähner, A. M. Bronstein, M. M. Bronstein, and J. Solomon, Functional
maps on product manifolds. The Eurographics Association, 2018.
ista: Rodola E, Lähner Z, Bronstein AM, Bronstein MM, Solomon J. 2018. Functional
maps on product manifolds, The Eurographics Association,p.
mla: Rodola, E., et al. “Functional Maps on Product Manifolds.” Symposium on
Geometry Processing, The Eurographics Association, 2018, doi:10.2312/SGP.20181182.
short: E. Rodola, Z. Lähner, A.M. Bronstein, M.M. Bronstein, J. Solomon, Functional
Maps on Product Manifolds, The Eurographics Association, 2018.
date_created: 2024-10-09T07:46:18Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2025-02-03T09:35:08Z
day: '01'
doi: 10.2312/SGP.20181182
extern: '1'
fulldoi: https://doi.org/10.2312/SGP.20181182
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.2312/sgp.20181182
month: '01'
oa: 1
oa_version: None
publication: Symposium on Geometry Processing
publication_identifier:
issn:
- 1727-8384
publication_status: published
publisher: The Eurographics Association
quality_controlled: '1'
status: public
title: Functional maps on product manifolds
type: conference_poster
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '18281'
abstract:
- lang: eng
text: Shape correspondence is a fundamental problem in computer graphics and vision,
with applications in various problems including animation, texture mapping, robotic
vision, medical imaging, archaeology and many more. In settings where the shapes
are allowed to undergo nonrigid deformations and only partial views are available,
the problem becomes very challenging. In this chapter we describe recent techniques
designed to tackle such problems. Specifically, we explain how the renown functional
maps framework can be extended to tackle the partial setting. We then present
a further extension to the multipart case in which one tries to establish correspondence
between a collection of shapes. Finally, we focus on improving the technique efficiency,
by disposing of its spatial ingredient and thus keeping the computation in the
spectral domain. Extensive experimental results are provided along with the theoretical
explanations, to demonstrate the effectiveness of the described methods in these
challenging scenarios.
alternative_title:
- Handbook of Numerical Analysis
article_processing_charge: No
author:
- first_name: Or
full_name: Litany, Or
last_name: Litany
- first_name: Emanuele
full_name: Rodolà, Emanuele
last_name: Rodolà
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
- first_name: Michael
full_name: Bronstein, Michael
last_name: Bronstein
- first_name: Daniel
full_name: Cremers, Daniel
last_name: Cremers
citation:
ama: 'Litany O, Rodolà E, Bronstein AM, Bronstein M, Cremers D. Partial Single-
and Multishape Dense Correspondence Using Functional Maps. In: Kimmel R, Tai X-C,
eds. Processing, Analyzing and Learning of Images, Shapes, and Forms: Part
1. Vol 19. 1st ed. Amsterdam: Elsevier; 2018:55-90. doi:10.1016/bs.hna.2018.09.002'
apa: 'Litany, O., Rodolà, E., Bronstein, A. M., Bronstein, M., & Cremers, D.
(2018). Partial Single- and Multishape Dense Correspondence Using Functional Maps.
In R. Kimmel & X.-C. Tai (Eds.), Processing, Analyzing and Learning of
Images, Shapes, and Forms: Part 1 (1st ed., Vol. 19, pp. 55–90). Amsterdam:
Elsevier. https://doi.org/10.1016/bs.hna.2018.09.002'
chicago: 'Litany, Or, Emanuele Rodolà, Alex M. Bronstein, Michael Bronstein, and
Daniel Cremers. “Partial Single- and Multishape Dense Correspondence Using Functional
Maps.” In Processing, Analyzing and Learning of Images, Shapes, and Forms:
Part 1, edited by Ron Kimmel and Xue-Cheng Tai, 1st ed., 19:55–90. Amsterdam:
Elsevier, 2018. https://doi.org/10.1016/bs.hna.2018.09.002.'
ieee: 'O. Litany, E. Rodolà, A. M. Bronstein, M. Bronstein, and D. Cremers, “Partial
Single- and Multishape Dense Correspondence Using Functional Maps,” in Processing,
Analyzing and Learning of Images, Shapes, and Forms: Part 1, 1st ed., vol.
19, R. Kimmel and X.-C. Tai, Eds. Amsterdam: Elsevier, 2018, pp. 55–90.'
ista: 'Litany O, Rodolà E, Bronstein AM, Bronstein M, Cremers D. 2018.Partial Single-
and Multishape Dense Correspondence Using Functional Maps. In: Processing, Analyzing
and Learning of Images, Shapes, and Forms: Part 1. Handbook of Numerical Analysis,
vol. 19, 55–90.'
mla: 'Litany, Or, et al. “Partial Single- and Multishape Dense Correspondence Using
Functional Maps.” Processing, Analyzing and Learning of Images, Shapes, and
Forms: Part 1, edited by Ron Kimmel and Xue-Cheng Tai, 1st ed., vol. 19, Elsevier,
2018, pp. 55–90, doi:10.1016/bs.hna.2018.09.002.'
short: 'O. Litany, E. Rodolà, A.M. Bronstein, M. Bronstein, D. Cremers, in:, R.
Kimmel, X.-C. Tai (Eds.), Processing, Analyzing and Learning of Images, Shapes,
and Forms: Part 1, 1st ed., Elsevier, Amsterdam, 2018, pp. 55–90.'
date_created: 2024-10-09T07:47:10Z
date_published: 2018-11-08T00:00:00Z
date_updated: 2025-01-23T13:43:17Z
day: '08'
doi: 10.1016/bs.hna.2018.09.002
edition: '1'
editor:
- first_name: Ron
full_name: Kimmel, Ron
last_name: Kimmel
- first_name: Xue-Cheng
full_name: Tai, Xue-Cheng
last_name: Tai
extern: '1'
fulldoi: https://doi.org/10.1016/bs.hna.2018.09.002
intvolume: ' 19'
language:
- iso: eng
month: '11'
oa_version: None
page: 55-90
place: Amsterdam
publication: 'Processing, Analyzing and Learning of Images, Shapes, and Forms: Part
1'
publication_identifier:
isbn:
- '9780444642059'
issn:
- 1570-8659
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Partial Single- and Multishape Dense Correspondence Using Functional Maps
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2018'
...
---
_id: '18282'
abstract:
- lang: eng
text: In this paper, we introduce a random forest semantic hashing scheme that embeds
tiny convolutional neural networks (CNN) into shallow random forests. A binary
hash code for a data point is obtained by a set of decision trees, setting ‘1’
for the visited tree leaf, and ‘0’ for the rest. We propose to first randomly
group arriving classes at each tree split node into two groups, obtaining a significantly
simplified two-class classification problem that can be a handled with a light-weight
CNN weak learner. Code uniqueness is achieved via the random class grouping, whilst
code consistency is achieved using a low-rank loss in the CNN weak learners that
encourages intra-class compactness for the two random class groups. Finally, we
introduce an information-theoretic approach for aggregating codes of individual
trees into a single hash code, producing a near-optimal unique hash for each class.
The proposed approach significantly outperforms state-of-the-art hashing methods
for image retrieval tasks on large-scale public datasets, and is comparable to
image classification methods while utilizing a more compact, efficient and scalable
representation. This work proposes a principled and robust procedure to train
and deploy in parallel an ensemble of light-weight CNNs, instead of simply going
deeper.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Qiang
full_name: Qiu, Qiang
last_name: Qiu
- first_name: José
full_name: Lezama, José
last_name: Lezama
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
- first_name: Guillermo
full_name: Sapiro, Guillermo
last_name: Sapiro
citation:
ama: 'Qiu Q, Lezama J, Bronstein AM, Sapiro G. ForestHash: Semantic hashing with
shallow random forests and tiny convolutional networks. In: European Conference
on Computer Vision. Vol 11206. Springer Nature; 2018. doi:10.1007/978-3-030-01216-8_27'
apa: 'Qiu, Q., Lezama, J., Bronstein, A. M., & Sapiro, G. (2018). ForestHash:
Semantic hashing with shallow random forests and tiny convolutional networks.
In European Conference on Computer Vision (Vol. 11206). Munich, Germany:
Springer Nature. https://doi.org/10.1007/978-3-030-01216-8_27'
chicago: 'Qiu, Qiang, José Lezama, Alex M. Bronstein, and Guillermo Sapiro. “ForestHash:
Semantic Hashing with Shallow Random Forests and Tiny Convolutional Networks.”
In European Conference on Computer Vision, Vol. 11206. Springer Nature,
2018. https://doi.org/10.1007/978-3-030-01216-8_27.'
ieee: 'Q. Qiu, J. Lezama, A. M. Bronstein, and G. Sapiro, “ForestHash: Semantic
hashing with shallow random forests and tiny convolutional networks,” in European
Conference on Computer Vision, Munich, Germany, 2018, vol. 11206, no. Part
II.'
ista: 'Qiu Q, Lezama J, Bronstein AM, Sapiro G. 2018. ForestHash: Semantic hashing
with shallow random forests and tiny convolutional networks. European Conference
on Computer Vision. ECCV: European Conference on Computer Vision, LNCS, vol. 11206.'
mla: 'Qiu, Qiang, et al. “ForestHash: Semantic Hashing with Shallow Random Forests
and Tiny Convolutional Networks.” European Conference on Computer Vision,
vol. 11206, no. Part II, Springer Nature, 2018, doi:10.1007/978-3-030-01216-8_27.'
short: Q. Qiu, J. Lezama, A.M. Bronstein, G. Sapiro, in:, European Conference on
Computer Vision, Springer Nature, 2018.
conference:
end_date: 2018-09-14
location: Munich, Germany
name: 'ECCV: European Conference on Computer Vision'
start_date: 2018-09-08
date_created: 2024-10-09T07:47:30Z
date_published: 2018-10-09T00:00:00Z
date_updated: 2025-01-23T13:25:18Z
day: '09'
doi: 10.1007/978-3-030-01216-8_27
extern: '1'
fulldoi: https://doi.org/10.1007/978-3-030-01216-8_27
intvolume: ' 11206'
issue: Part II
language:
- iso: eng
month: '10'
oa_version: None
publication: European Conference on Computer Vision
publication_identifier:
eisbn:
- '9783030012168'
eissn:
- 1611-3349
isbn:
- '9783030012151'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'ForestHash: Semantic hashing with shallow random forests and tiny convolutional
networks'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 11206
year: '2018'
...
---
_id: '18283'
abstract:
- lang: eng
text: Cardiac ultrasound imaging requires a high frame rate in order to capture
rapid motion. This can be achieved by multi-line acquisition (MLA), where several
narrow-focused received lines are obtained from each wide-focused transmitted
line. This shortens the acquisition time at the expense of introducing block artifacts.
In this paper, we propose a data-driven learning-based approach to improve the
MLA image quality. We train an end-to-end convolutional neural network on pairs
of real ultrasound cardiac data, acquired through MLA and the corresponding single-line
acquisition (SLA). The network achieves a significant improvement in image quality
for both 5- and 7-line MLA resulting in a decorrelation measure similar to that
of SLA while having the frame rate of MLA.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Ortal
full_name: Senouf, Ortal
last_name: Senouf
- first_name: Sanketh
full_name: Vedula, Sanketh
last_name: Vedula
- first_name: Grigoriy
full_name: Zurakhov, Grigoriy
last_name: Zurakhov
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
- first_name: Michael
full_name: Zibulevsky, Michael
last_name: Zibulevsky
- first_name: Oleg
full_name: Michailovich, Oleg
last_name: Michailovich
- first_name: Dan
full_name: Adam, Dan
last_name: Adam
- first_name: David
full_name: Blondheim, David
last_name: Blondheim
citation:
ama: 'Senouf O, Vedula S, Zurakhov G, et al. High frame-rate cardiac ultrasound
imaging with deep learning. In: International Conference on Medical Image Computing
and Computer Assisted Intervention. Vol 11070. Springer Nature; 2018:126-134.
doi:10.1007/978-3-030-00928-1_15'
apa: 'Senouf, O., Vedula, S., Zurakhov, G., Bronstein, A. M., Zibulevsky, M., Michailovich,
O., … Blondheim, D. (2018). High frame-rate cardiac ultrasound imaging with deep
learning. In International Conference on Medical Image Computing and Computer
Assisted Intervention (Vol. 11070, pp. 126–134). Granada, Spain: Springer
Nature. https://doi.org/10.1007/978-3-030-00928-1_15'
chicago: Senouf, Ortal, Sanketh Vedula, Grigoriy Zurakhov, Alex M. Bronstein, Michael
Zibulevsky, Oleg Michailovich, Dan Adam, and David Blondheim. “High Frame-Rate
Cardiac Ultrasound Imaging with Deep Learning.” In International Conference
on Medical Image Computing and Computer Assisted Intervention, 11070:126–34.
Springer Nature, 2018. https://doi.org/10.1007/978-3-030-00928-1_15.
ieee: O. Senouf et al., “High frame-rate cardiac ultrasound imaging with
deep learning,” in International Conference on Medical Image Computing and
Computer Assisted Intervention, Granada, Spain, 2018, vol. 11070, no. Part
1, pp. 126–134.
ista: 'Senouf O, Vedula S, Zurakhov G, Bronstein AM, Zibulevsky M, Michailovich
O, Adam D, Blondheim D. 2018. High frame-rate cardiac ultrasound imaging with
deep learning. International Conference on Medical Image Computing and Computer
Assisted Intervention. MICCAI: Medical Image Computing and Computer Assisted Intervention,
LNCS, vol. 11070, 126–134.'
mla: Senouf, Ortal, et al. “High Frame-Rate Cardiac Ultrasound Imaging with Deep
Learning.” International Conference on Medical Image Computing and Computer
Assisted Intervention, vol. 11070, no. Part 1, Springer Nature, 2018, pp.
126–34, doi:10.1007/978-3-030-00928-1_15.
short: O. Senouf, S. Vedula, G. Zurakhov, A.M. Bronstein, M. Zibulevsky, O. Michailovich,
D. Adam, D. Blondheim, in:, International Conference on Medical Image Computing
and Computer Assisted Intervention, Springer Nature, 2018, pp. 126–134.
conference:
end_date: 2018-09-20
location: Granada, Spain
name: 'MICCAI: Medical Image Computing and Computer Assisted Intervention'
start_date: 2018-09-16
date_created: 2024-10-09T07:47:49Z
date_published: 2018-09-14T00:00:00Z
date_updated: 2025-01-23T13:13:01Z
day: '14'
doi: 10.1007/978-3-030-00928-1_15
extern: '1'
fulldoi: https://doi.org/10.1007/978-3-030-00928-1_15
intvolume: ' 11070'
issue: Part 1
language:
- iso: eng
month: '09'
oa_version: None
page: 126 - 134
publication: International Conference on Medical Image Computing and Computer Assisted
Intervention
publication_identifier:
eisbn:
- '9783030009281'
eissn:
- 1611-3349
isbn:
- '9783030009274'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: High frame-rate cardiac ultrasound imaging with deep learning
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 11070
year: '2018'
...
---
_id: '18284'
abstract:
- lang: eng
text: Frame rate is a crucial consideration in cardiac ultrasound imaging and 3D
sonography. Several methods have been proposed in the medical ultrasound literature
aiming at accelerating the image acquisition. In this paper, we consider one such
method called multi-line transmission (MLT), in which several evenly separated
focused beams are transmitted simultaneously. While MLT reduces the acquisition
time, it comes at the expense of a heavy loss of contrast due to the interactions
between the beams (cross-talk artifact). In this paper, we introduce a data-driven
method to reduce the artifacts arising in MLT. To this end, we propose to train
an end-to-end convolutional neural network consisting of correction layers followed
by a constant apodization layer. The network is trained on pairs of raw data obtained
through MLT and the corresponding single-line transmission (SLT) data. Experimental
evaluation demonstrates significant improvement both in the visual image quality
and in objective measures such as contrast ratio and contrast-to-noise ratio,
while preserving resolution unlike traditional apodization-based methods. We show
that the proposed method is able to generalize well across different patients
and anatomies on real and phantom data.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Sanketh
full_name: Vedula, Sanketh
last_name: Vedula
- first_name: Ortal
full_name: Senouf, Ortal
last_name: Senouf
- first_name: Grigoriy
full_name: Zurakhov, Grigoriy
last_name: Zurakhov
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
- first_name: Michael
full_name: Zibulevsky, Michael
last_name: Zibulevsky
- first_name: Oleg
full_name: Michailovich, Oleg
last_name: Michailovich
- first_name: Dan
full_name: Adam, Dan
last_name: Adam
- first_name: Diana
full_name: Gaitini, Diana
last_name: Gaitini
citation:
ama: 'Vedula S, Senouf O, Zurakhov G, et al. High quality ultrasonic multi-line
transmission through deep learning. In: First International Workshop, MLMIR
2018, Held in Conjunction with MICCAI 2018. Vol 11074. Springer Nature; 2018:147-155.
doi:10.1007/978-3-030-00129-2_17'
apa: 'Vedula, S., Senouf, O., Zurakhov, G., Bronstein, A. M., Zibulevsky, M., Michailovich,
O., … Gaitini, D. (2018). High quality ultrasonic multi-line transmission through
deep learning. In First International Workshop, MLMIR 2018, Held in Conjunction
with MICCAI 2018 (Vol. 11074, pp. 147–155). Granada, Spain: Springer Nature.
https://doi.org/10.1007/978-3-030-00129-2_17'
chicago: Vedula, Sanketh, Ortal Senouf, Grigoriy Zurakhov, Alex M. Bronstein, Michael
Zibulevsky, Oleg Michailovich, Dan Adam, and Diana Gaitini. “High Quality Ultrasonic
Multi-Line Transmission through Deep Learning.” In First International Workshop,
MLMIR 2018, Held in Conjunction with MICCAI 2018, 11074:147–55. Springer Nature,
2018. https://doi.org/10.1007/978-3-030-00129-2_17.
ieee: S. Vedula et al., “High quality ultrasonic multi-line transmission
through deep learning,” in First International Workshop, MLMIR 2018, Held in
Conjunction with MICCAI 2018, Granada, Spain, 2018, vol. 11074, pp. 147–155.
ista: 'Vedula S, Senouf O, Zurakhov G, Bronstein AM, Zibulevsky M, Michailovich
O, Adam D, Gaitini D. 2018. High quality ultrasonic multi-line transmission through
deep learning. First International Workshop, MLMIR 2018, Held in Conjunction with
MICCAI 2018. MLMIR: Workshop on Machine Learning for Medical Image Reconstruction,
LNCS, vol. 11074, 147–155.'
mla: Vedula, Sanketh, et al. “High Quality Ultrasonic Multi-Line Transmission through
Deep Learning.” First International Workshop, MLMIR 2018, Held in Conjunction
with MICCAI 2018, vol. 11074, Springer Nature, 2018, pp. 147–55, doi:10.1007/978-3-030-00129-2_17.
short: S. Vedula, O. Senouf, G. Zurakhov, A.M. Bronstein, M. Zibulevsky, O. Michailovich,
D. Adam, D. Gaitini, in:, First International Workshop, MLMIR 2018, Held in Conjunction
with MICCAI 2018, Springer Nature, 2018, pp. 147–155.
conference:
end_date: 2018-09-16
location: Granada, Spain
name: 'MLMIR: Workshop on Machine Learning for Medical Image Reconstruction'
start_date: 2018-09-16
date_created: 2024-10-09T07:48:06Z
date_published: 2018-09-12T00:00:00Z
date_updated: 2025-01-23T12:53:22Z
day: '12'
doi: 10.1007/978-3-030-00129-2_17
extern: '1'
fulldoi: https://doi.org/10.1007/978-3-030-00129-2_17
intvolume: ' 11074'
language:
- iso: eng
month: '09'
oa_version: None
page: 147 - 155
publication: First International Workshop, MLMIR 2018, Held in Conjunction with MICCAI
2018
publication_identifier:
eisbn:
- '9783030001292'
eissn:
- 1611-3349
isbn:
- '9783030001285'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: High quality ultrasonic multi-line transmission through deep learning
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 11074
year: '2018'
...
---
_id: '18285'
abstract:
- lang: eng
text: Single image depth estimation is achieved using computational imaging and
Deep Learning (DL). Imaging with phase-mask is also modeled as a DL-layer, and
the mask and DL parameters are jointly designed using labeled data.
article_number: CW3B.3
article_processing_charge: No
author:
- first_name: Harel
full_name: Haim, Harel
last_name: Haim
- first_name: Shay
full_name: Elmalem, Shay
last_name: Elmalem
- first_name: Raja
full_name: Giryes, Raja
last_name: Giryes
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
- first_name: Emanuel
full_name: Marom, Emanuel
last_name: Marom
citation:
ama: 'Haim H, Elmalem S, Giryes R, Bronstein AM, Marom E. Deep learned phase mask
for single image depth estimation and 3D scanning. In: Imaging and Applied
Optics 2018 (3D, AO, AIO, COSI, DH, IS, LACSEA, LS&C, MATH, PcAOP). Vol
Part F99-COSI 2018. OSA; 2018. doi:10.1364/cosi.2018.cw3b.3'
apa: 'Haim, H., Elmalem, S., Giryes, R., Bronstein, A. M., & Marom, E. (2018).
Deep learned phase mask for single image depth estimation and 3D scanning. In
Imaging and Applied Optics 2018 (3D, AO, AIO, COSI, DH, IS, LACSEA, LS&C,
MATH, pcAOP) (Vol. Part F99-COSI 2018). Orlando, FL, United States: OSA. https://doi.org/10.1364/cosi.2018.cw3b.3'
chicago: Haim, Harel, Shay Elmalem, Raja Giryes, Alex M. Bronstein, and Emanuel
Marom. “Deep Learned Phase Mask for Single Image Depth Estimation and 3D Scanning.”
In Imaging and Applied Optics 2018 (3D, AO, AIO, COSI, DH, IS, LACSEA, LS&C,
MATH, PcAOP), Vol. Part F99-COSI 2018. OSA, 2018. https://doi.org/10.1364/cosi.2018.cw3b.3.
ieee: H. Haim, S. Elmalem, R. Giryes, A. M. Bronstein, and E. Marom, “Deep learned
phase mask for single image depth estimation and 3D scanning,” in Imaging and
Applied Optics 2018 (3D, AO, AIO, COSI, DH, IS, LACSEA, LS&C, MATH, pcAOP),
Orlando, FL, United States, 2018, vol. Part F99-COSI 2018.
ista: 'Haim H, Elmalem S, Giryes R, Bronstein AM, Marom E. 2018. Deep learned phase
mask for single image depth estimation and 3D scanning. Imaging and Applied Optics
2018 (3D, AO, AIO, COSI, DH, IS, LACSEA, LS&C, MATH, pcAOP). COSI: Computational
Optical Sensing and Imaging vol. Part F99-COSI 2018, CW3B.3.'
mla: Haim, Harel, et al. “Deep Learned Phase Mask for Single Image Depth Estimation
and 3D Scanning.” Imaging and Applied Optics 2018 (3D, AO, AIO, COSI, DH, IS,
LACSEA, LS&C, MATH, PcAOP), vol. Part F99-COSI 2018, CW3B.3, OSA, 2018,
doi:10.1364/cosi.2018.cw3b.3.
short: H. Haim, S. Elmalem, R. Giryes, A.M. Bronstein, E. Marom, in:, Imaging and
Applied Optics 2018 (3D, AO, AIO, COSI, DH, IS, LACSEA, LS&C, MATH, PcAOP),
OSA, 2018.
conference:
end_date: 2018-06-28
location: Orlando, FL, United States
name: 'COSI: Computational Optical Sensing and Imaging'
start_date: 2018-06-25
date_created: 2024-10-09T07:48:24Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2025-01-23T12:42:46Z
day: '01'
doi: 10.1364/cosi.2018.cw3b.3
extern: '1'
fulldoi: https://doi.org/10.1364/cosi.2018.cw3b.3
language:
- iso: eng
month: '06'
oa_version: None
publication: Imaging and Applied Optics 2018 (3D, AO, AIO, COSI, DH, IS, LACSEA, LS&C,
MATH, pcAOP)
publication_identifier:
isbn:
- '9781943580446'
publication_status: published
publisher: OSA
quality_controlled: '1'
scopus_import: '1'
status: public
title: Deep learned phase mask for single image depth estimation and 3D scanning
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: Part F99-COSI 2018
year: '2018'
...
---
_id: '183'
abstract:
- lang: eng
text: 'Fault-localization is considered to be a very tedious and time-consuming
activity in the design of complex Cyber-Physical Systems (CPS). This laborious
task essentially requires expert knowledge of the system in order to discover
the cause of the fault. In this context, we propose a new procedure that AIDS
designers in debugging Simulink/Stateflow hybrid system models, guided by Signal
Temporal Logic (STL) specifications. The proposed method relies on three main
ingredients: (1) a monitoring and a trace diagnostics procedure that checks whether
a tested behavior satisfies or violates an STL specification, localizes time segments
and interfaces variables contributing to the property violations; (2) a slicing
procedure that maps these observable behavior segments to the internal states
and transitions of the Simulink model; and (3) a spectrum-based fault-localization
method that combines the previous analysis from multiple tests to identify the
internal states and/or transitions that are the most likely to explain the fault.
We demonstrate the applicability of our approach on two Simulink models from the
automotive and the avionics domain.'
acknowledgement: This work was partially supported by the Austrian Science Fund (FWF)
under grants S11402-N23 and S11405-N23 (RiSE/SHiNE), the CPS/IoT project (HRSM),
the EU ICT COST Action IC1402 on Run-time Verification beyond Monitoring (ARVI),
the AMASS project (ECSEL 692474), and the ENABLE-S3 project (ECSEL 692455). The
CPS/IoT project receives support from the Austrian government through the Federal
Ministry of Science, Research and Economy (BMWFW) in the funding program Hochschulraum-Strukturmittel
(HRSM) 2016. The ECSEL Joint Undertaking receives support from the European Union’s
Horizon 2020 research and innovation programme and Austria, Denmark, Germany, Finland,
Czech Republic, Italy, Spain, Portugal, Poland, Ireland, Belgium, France, Netherlands,
United Kingdom, Slovakia, Norway.
alternative_title:
- HSCC Proceedings
article_processing_charge: No
author:
- first_name: Ezio
full_name: Bartocci, Ezio
last_name: Bartocci
- first_name: Thomas
full_name: Ferrere, Thomas
id: 40960E6E-F248-11E8-B48F-1D18A9856A87
last_name: Ferrere
orcid: 0000-0001-5199-3143
- first_name: Niveditha
full_name: Manjunath, Niveditha
last_name: Manjunath
- first_name: Dejan
full_name: Nickovic, Dejan
last_name: Nickovic
citation:
ama: 'Bartocci E, Ferrere T, Manjunath N, Nickovic D. Localizing faults in simulink/stateflow
models with STL. In: Association for Computing Machinery; 2018:197-206. doi:10.1145/3178126.3178131'
apa: 'Bartocci, E., Ferrere, T., Manjunath, N., & Nickovic, D. (2018). Localizing
faults in simulink/stateflow models with STL (pp. 197–206). Presented at the HSCC:
Hybrid Systems - Computation and Control, Porto, Portugal: Association for Computing
Machinery. https://doi.org/10.1145/3178126.3178131'
chicago: Bartocci, Ezio, Thomas Ferrere, Niveditha Manjunath, and Dejan Nickovic.
“Localizing Faults in Simulink/Stateflow Models with STL,” 197–206. Association
for Computing Machinery, 2018. https://doi.org/10.1145/3178126.3178131.
ieee: 'E. Bartocci, T. Ferrere, N. Manjunath, and D. Nickovic, “Localizing faults
in simulink/stateflow models with STL,” presented at the HSCC: Hybrid Systems
- Computation and Control, Porto, Portugal, 2018, pp. 197–206.'
ista: 'Bartocci E, Ferrere T, Manjunath N, Nickovic D. 2018. Localizing faults in
simulink/stateflow models with STL. HSCC: Hybrid Systems - Computation and Control,
HSCC Proceedings, , 197–206.'
mla: Bartocci, Ezio, et al. Localizing Faults in Simulink/Stateflow Models with
STL. Association for Computing Machinery, 2018, pp. 197–206, doi:10.1145/3178126.3178131.
short: E. Bartocci, T. Ferrere, N. Manjunath, D. Nickovic, in:, Association for
Computing Machinery, 2018, pp. 197–206.
conference:
end_date: 2018-04-13
location: Porto, Portugal
name: 'HSCC: Hybrid Systems - Computation and Control'
start_date: 2018-04-11
date_created: 2018-12-11T11:45:04Z
date_published: 2018-04-11T00:00:00Z
date_updated: 2025-07-10T11:51:22Z
day: '11'
department:
- _id: ToHe
doi: 10.1145/3178126.3178131
external_id:
isi:
- '000474781600022'
fulldoi: https://doi.org/10.1145/3178126.3178131
isi: 1
language:
- iso: eng
month: '04'
oa_version: None
page: 197 - 206
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication_status: published
publisher: Association for Computing Machinery
publist_id: '7738'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Localizing faults in simulink/stateflow models with STL
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '184'
abstract:
- lang: eng
text: We prove that for every d ≥ 2, deciding if a pure, d-dimensional, simplicial
complex is shellable is NP-hard, hence NP-complete. This resolves a question raised,
e.g., by Danaraj and Klee in 1978. Our reduction also yields that for every d
≥ 2 and k ≥ 0, deciding if a pure, d-dimensional, simplicial complex is k-decomposable
is NP-hard. For d ≥ 3, both problems remain NP-hard when restricted to contractible
pure d-dimensional complexes.
acknowledgement: 'Partially supported by the project EMBEDS II (CZ: 7AMB17FR029, FR:
38087RM) of Czech-French collaboration.'
alternative_title:
- Leibniz International Proceedings in Information, LIPIcs
author:
- first_name: Xavier
full_name: Goaoc, Xavier
last_name: Goaoc
- first_name: Pavel
full_name: Paták, Pavel
last_name: Paták
- first_name: Zuzana
full_name: Patakova, Zuzana
id: 48B57058-F248-11E8-B48F-1D18A9856A87
last_name: Patakova
orcid: 0000-0002-3975-1683
- first_name: Martin
full_name: Tancer, Martin
id: 38AC689C-F248-11E8-B48F-1D18A9856A87
last_name: Tancer
orcid: 0000-0002-1191-6714
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: 'Goaoc X, Paták P, Patakova Z, Tancer M, Wagner U. Shellability is NP-complete.
In: Vol 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018:41:1-41:16.
doi:10.4230/LIPIcs.SoCG.2018.41'
apa: 'Goaoc, X., Paták, P., Patakova, Z., Tancer, M., & Wagner, U. (2018). Shellability
is NP-complete (Vol. 99, p. 41:1-41:16). Presented at the SoCG: Symposium on Computational
Geometry, Budapest, Hungary: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
https://doi.org/10.4230/LIPIcs.SoCG.2018.41'
chicago: Goaoc, Xavier, Pavel Paták, Zuzana Patakova, Martin Tancer, and Uli Wagner.
“Shellability Is NP-Complete,” 99:41:1-41:16. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2018. https://doi.org/10.4230/LIPIcs.SoCG.2018.41.
ieee: 'X. Goaoc, P. Paták, Z. Patakova, M. Tancer, and U. Wagner, “Shellability
is NP-complete,” presented at the SoCG: Symposium on Computational Geometry, Budapest,
Hungary, 2018, vol. 99, p. 41:1-41:16.'
ista: 'Goaoc X, Paták P, Patakova Z, Tancer M, Wagner U. 2018. Shellability is NP-complete.
SoCG: Symposium on Computational Geometry, Leibniz International Proceedings in
Information, LIPIcs, vol. 99, 41:1-41:16.'
mla: Goaoc, Xavier, et al. Shellability Is NP-Complete. Vol. 99, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2018, p. 41:1-41:16, doi:10.4230/LIPIcs.SoCG.2018.41.
short: X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, Schloss Dagstuhl
- Leibniz-Zentrum für Informatik, 2018, p. 41:1-41:16.
conference:
end_date: 2018-06-14
location: Budapest, Hungary
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2018-06-11
date_created: 2018-12-11T11:45:04Z
date_published: 2018-06-11T00:00:00Z
date_updated: 2025-06-04T07:49:02Z
day: '11'
ddc:
- '516'
- '000'
department:
- _id: UlWa
doi: 10.4230/LIPIcs.SoCG.2018.41
file:
- access_level: open_access
checksum: d12bdd60f04a57307867704b5f930afd
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T16:35:02Z
date_updated: 2020-07-14T12:45:18Z
file_id: '5725'
file_name: 2018_LIPIcs_Goaoc.pdf
file_size: 718414
relation: main_file
file_date_updated: 2020-07-14T12:45:18Z
fulldoi: https://doi.org/10.4230/LIPIcs.SoCG.2018.41
has_accepted_license: '1'
intvolume: ' 99'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '06'
oa: 1
oa_version: Published Version
page: 41:1 - 41:16
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7736'
quality_controlled: '1'
related_material:
record:
- id: '7108'
relation: later_version
status: public
scopus_import: 1
status: public
title: Shellability is NP-complete
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 99
year: '2018'
...
---
_id: '18402'
abstract:
- lang: eng
text: The increasing demand for high image quality in mobile devices brings forth
the need for better computational enhancement techniques, and image denoising
in particular. To this end, we propose a new fully convolutional deep neural network
architecture which is simple yet powerful and achieves state-of-the-art performance
for additive Gaussian noise removal. Furthermore, we claim that the personal photo-collections
can usually be categorized into a small set of semantic classes. However simple,
this observation has not been exploited in image denoising until now. We show
that a significant boost in performance of up to 0.4dB PSNR can be achieved by
making our network class-aware, namely, by fine-tuning it for images belonging
to a specific semantic class. Relying on the hugely successful existing image
classifiers, this research advocates for using a class-aware approach in all image
enhancement tasks.
article_processing_charge: No
author:
- first_name: Tal
full_name: Remez, Tal
last_name: Remez
- first_name: Or
full_name: Litany, Or
last_name: Litany
- first_name: Raja
full_name: Giryes, Raja
last_name: Giryes
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
citation:
ama: 'Remez T, Litany O, Giryes R, Bronstein AM. Deep class-aware image denoising.
In: 2017 IEEE International Conference on Image Processing (ICIP). IEEE;
2018:1895-1899. doi:10.1109/icip.2017.8296611'
apa: 'Remez, T., Litany, O., Giryes, R., & Bronstein, A. M. (2018). Deep class-aware
image denoising. In 2017 IEEE International Conference on Image Processing
(ICIP) (pp. 1895–1899). Beijing, China: IEEE. https://doi.org/10.1109/icip.2017.8296611'
chicago: Remez, Tal, Or Litany, Raja Giryes, and Alex M. Bronstein. “Deep Class-Aware
Image Denoising.” In 2017 IEEE International Conference on Image Processing
(ICIP), 1895–99. IEEE, 2018. https://doi.org/10.1109/icip.2017.8296611.
ieee: T. Remez, O. Litany, R. Giryes, and A. M. Bronstein, “Deep class-aware image
denoising,” in 2017 IEEE International Conference on Image Processing (ICIP),
Beijing, China, 2018, pp. 1895–1899.
ista: Remez T, Litany O, Giryes R, Bronstein AM. 2018. Deep class-aware image denoising.
2017 IEEE International Conference on Image Processing (ICIP). 24th IEEE International
Conference on Image Processing, 1895–1899.
mla: Remez, Tal, et al. “Deep Class-Aware Image Denoising.” 2017 IEEE International
Conference on Image Processing (ICIP), IEEE, 2018, pp. 1895–99, doi:10.1109/icip.2017.8296611.
short: T. Remez, O. Litany, R. Giryes, A.M. Bronstein, in:, 2017 IEEE International
Conference on Image Processing (ICIP), IEEE, 2018, pp. 1895–1899.
conference:
end_date: 2017-09-20
location: Beijing, China
name: 24th IEEE International Conference on Image Processing
start_date: 2017-09-17
date_created: 2024-10-15T11:20:54Z
date_published: 2018-02-22T00:00:00Z
date_updated: 2024-12-05T14:00:53Z
day: '22'
doi: 10.1109/icip.2017.8296611
extern: '1'
fulldoi: https://doi.org/10.1109/icip.2017.8296611
language:
- iso: eng
month: '02'
oa_version: None
page: 1895 - 1899
publication: 2017 IEEE International Conference on Image Processing (ICIP)
publication_identifier:
eissn:
- 2381-8549
isbn:
- '9781509021765'
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Deep class-aware image denoising
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
OA_place: repository
OA_type: green
_id: '22042'
abstract:
- lang: eng
text: "We study the L p-theory for the Schrödinger operatorLa with inverse-square
potential\r\na|x|^−2. Our main result describes when L p-based Sobolev spaces
defined in terms of the\r\noperator (La)^s/2 agree with those defined via (−\x02)^s/2.We
consider all regularities 0 < s < 2.\r\nIn order to make the paper self-contained,
we also review (with proofs) multiplier theorems,\r\nLittlewood–Paley theory,
and Hardy-type inequalities associated to the operator La."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: R.
full_name: Killip, R.
last_name: Killip
- first_name: C.
full_name: Miao, C.
last_name: Miao
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
- first_name: J.
full_name: Zhang, J.
last_name: Zhang
- first_name: J.
full_name: Zheng, J.
last_name: Zheng
citation:
ama: Killip R, Miao C, Vişan M, Zhang J, Zheng J. Sobolev spaces adapted to the
Schrödinger operator with inverse-square potential. Mathematische Zeitschrift.
2018;288(3-4):1273-1298. doi:10.1007/s00209-017-1934-8
apa: Killip, R., Miao, C., Vişan, M., Zhang, J., & Zheng, J. (2018). Sobolev
spaces adapted to the Schrödinger operator with inverse-square potential. Mathematische
Zeitschrift. Springer Nature. https://doi.org/10.1007/s00209-017-1934-8
chicago: Killip, R., C. Miao, Monica Vişan, J. Zhang, and J. Zheng. “Sobolev Spaces
Adapted to the Schrödinger Operator with Inverse-Square Potential.” Mathematische
Zeitschrift. Springer Nature, 2018. https://doi.org/10.1007/s00209-017-1934-8.
ieee: R. Killip, C. Miao, M. Vişan, J. Zhang, and J. Zheng, “Sobolev spaces adapted
to the Schrödinger operator with inverse-square potential,” Mathematische Zeitschrift,
vol. 288, no. 3–4. Springer Nature, pp. 1273–1298, 2018.
ista: Killip R, Miao C, Vişan M, Zhang J, Zheng J. 2018. Sobolev spaces adapted
to the Schrödinger operator with inverse-square potential. Mathematische Zeitschrift.
288(3–4), 1273–1298.
mla: Killip, R., et al. “Sobolev Spaces Adapted to the Schrödinger Operator with
Inverse-Square Potential.” Mathematische Zeitschrift, vol. 288, no. 3–4,
Springer Nature, 2018, pp. 1273–98, doi:10.1007/s00209-017-1934-8.
short: R. Killip, C. Miao, M. Vişan, J. Zhang, J. Zheng, Mathematische Zeitschrift
288 (2018) 1273–1298.
date_created: 2026-06-19T07:46:14Z
date_published: 2018-04-01T00:00:00Z
date_updated: 2026-06-25T07:36:26Z
day: '01'
doi: 10.1007/s00209-017-1934-8
extern: '1'
external_id:
arxiv:
- '1503.02716'
fulldoi: https://doi.org/10.1007/s00209-017-1934-8
intvolume: ' 288'
issue: 3-4
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.1503.02716
mathsc:
- 35P25
- 35Q55
month: '04'
oa: 1
oa_version: Preprint
page: 1273-1298
publication: Mathematische Zeitschrift
publication_identifier:
eissn:
- 1432-1823
issn:
- 0025-5874
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sobolev spaces adapted to the Schrödinger operator with inverse-square potential
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 288
year: '2018'
...
---
OA_place: repository
OA_type: green
_id: '22045'
abstract:
- lang: eng
text: "We consider the initial-value problem for the cubic-quintic nonlinear Schrödinger
equation (\U0001D456\U0001D715\U0001D461+Δ)\U0001D713 =\U0001D6FC1\U0001D713
−\U0001D6FC3|\U0001D713|2\U0001D713 +\U0001D6FC5|\U0001D713|4\U0001D713 in
three spatial dimensions in the class of solutions with |\U0001D713(\U0001D465)|
→\U0001D450 >0 as |\U0001D465| →∞. Here \U0001D6FC1, \U0001D6FC3, \U0001D6FC5,
and \U0001D450 are such that \U0001D713(\U0001D465) ≡\U0001D450 is an energetically
stable equilibrium solution to this equation. Normalizing the boundary condition
to \U0001D713(\U0001D465) →1 as |\U0001D465| →∞, we study the associated initial-value
problem for \U0001D462 =\U0001D713 −1 and prove a scattering result for small
initial data in a weighted Sobolev space."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rowan
full_name: Killip, Rowan
last_name: Killip
- first_name: Jason
full_name: Murphy, Jason
last_name: Murphy
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
citation:
ama: Killip R, Murphy J, Vişan M. The initial-value problem for the cubic-quintic
NLS with nonvanishing boundary conditions. SIAM Journal on Mathematical Analysis.
2018;50(3):2681-2739. doi:10.1137/17m1116702
apa: Killip, R., Murphy, J., & Vişan, M. (2018). The initial-value problem for
the cubic-quintic NLS with nonvanishing boundary conditions. SIAM Journal on
Mathematical Analysis. Society for Industrial & Applied Mathematics. https://doi.org/10.1137/17m1116702
chicago: Killip, Rowan, Jason Murphy, and Monica Vişan. “The Initial-Value Problem
for the Cubic-Quintic NLS with Nonvanishing Boundary Conditions.” SIAM Journal
on Mathematical Analysis. Society for Industrial & Applied Mathematics,
2018. https://doi.org/10.1137/17m1116702.
ieee: R. Killip, J. Murphy, and M. Vişan, “The initial-value problem for the cubic-quintic
NLS with nonvanishing boundary conditions,” SIAM Journal on Mathematical Analysis,
vol. 50, no. 3. Society for Industrial & Applied Mathematics, pp. 2681–2739,
2018.
ista: Killip R, Murphy J, Vişan M. 2018. The initial-value problem for the cubic-quintic
NLS with nonvanishing boundary conditions. SIAM Journal on Mathematical Analysis.
50(3), 2681–2739.
mla: Killip, Rowan, et al. “The Initial-Value Problem for the Cubic-Quintic NLS
with Nonvanishing Boundary Conditions.” SIAM Journal on Mathematical Analysis,
vol. 50, no. 3, Society for Industrial & Applied Mathematics, 2018, pp. 2681–739,
doi:10.1137/17m1116702.
short: R. Killip, J. Murphy, M. Vişan, SIAM Journal on Mathematical Analysis 50
(2018) 2681–2739.
das_tickbox: '1'
date_created: 2026-06-19T07:49:03Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2026-06-25T07:49:21Z
day: '01'
doi: 10.1137/17m1116702
extern: '1'
external_id:
arxiv:
- '1702.04413'
fulldoi: https://doi.org/10.1137/17m1116702
intvolume: ' 50'
issue: '3'
keyword:
- cubic-quintic NLS
- nonvanishing boundary conditions
- space-time resonances
- scattering
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.1702.04413
mathsc:
- 35Q55
month: '01'
oa: 1
oa_version: Preprint
page: 2681-2739
publication: SIAM Journal on Mathematical Analysis
publication_identifier:
issn:
- 0036-1410
- 1095-7154
publication_status: published
publisher: Society for Industrial & Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: The initial-value problem for the cubic-quintic NLS with nonvanishing boundary
conditions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2018'
...
---
OA_place: repository
OA_type: green
_id: '22055'
abstract:
- lang: eng
text: We present a general method for obtaining conservation laws for integrable
PDE at negative regularity and exhibit its application to KdV, NLS, and mKdV.
Our method works uniformly for these problems posed both on the line and on the
circle.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rowan
full_name: Killip, Rowan
last_name: Killip
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
- first_name: Xiaoyi
full_name: Zhang, Xiaoyi
last_name: Zhang
citation:
ama: Killip R, Vişan M, Zhang X. Low regularity conservation laws for integrable
PDE. Geometric and Functional Analysis. 2018;28(4):1062-1090. doi:10.1007/s00039-018-0444-0
apa: Killip, R., Vişan, M., & Zhang, X. (2018). Low regularity conservation
laws for integrable PDE. Geometric and Functional Analysis. Springer Nature.
https://doi.org/10.1007/s00039-018-0444-0
chicago: Killip, Rowan, Monica Vişan, and Xiaoyi Zhang. “Low Regularity Conservation
Laws for Integrable PDE.” Geometric and Functional Analysis. Springer Nature,
2018. https://doi.org/10.1007/s00039-018-0444-0.
ieee: R. Killip, M. Vişan, and X. Zhang, “Low regularity conservation laws for integrable
PDE,” Geometric and Functional Analysis, vol. 28, no. 4. Springer Nature,
pp. 1062–1090, 2018.
ista: Killip R, Vişan M, Zhang X. 2018. Low regularity conservation laws for integrable
PDE. Geometric and Functional Analysis. 28(4), 1062–1090.
mla: Killip, Rowan, et al. “Low Regularity Conservation Laws for Integrable PDE.”
Geometric and Functional Analysis, vol. 28, no. 4, Springer Nature, 2018,
pp. 1062–90, doi:10.1007/s00039-018-0444-0.
short: R. Killip, M. Vişan, X. Zhang, Geometric and Functional Analysis 28 (2018)
1062–1090.
das_tickbox: '1'
date_created: 2026-06-19T07:56:48Z
date_published: 2018-07-01T00:00:00Z
date_updated: 2026-06-29T09:55:53Z
day: '01'
doi: 10.1007/s00039-018-0444-0
extern: '1'
external_id:
arxiv:
- '1708.05362'
fulldoi: https://doi.org/10.1007/s00039-018-0444-0
intvolume: ' 28'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.1708.05362
month: '07'
oa: 1
oa_version: Preprint
page: 1062-1090
publication: Geometric and Functional Analysis
publication_identifier:
eissn:
- 1420-8970
issn:
- 1016-443X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Low regularity conservation laws for integrable PDE
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2018'
...
---
OA_type: free access
_id: '22093'
abstract:
- lang: eng
text: Nonlinear dispersive equations are models for nonlinear waves in a wide range
of physical contexts. Mathematically they display an interplay between linear
dispersion and nonlinear interactions, which can result in a wide range of outcomes
from finite time blow-up to solitons and scattering. They are linked to many areas
of mathematics and physics, ranging from integrable systems and harmonic analysis
to fluid dynamics, geometry, general relativity and probability.
article_processing_charge: No
author:
- first_name: Herbert
full_name: Koch, Herbert
last_name: Koch
- first_name: Pierre
full_name: Raphaël, Pierre
last_name: Raphaël
- first_name: Daniel
full_name: Tataru, Daniel
last_name: Tataru
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
citation:
ama: Koch H, Raphaël P, Tataru D, Vişan M. Nonlinear waves and dispersive equations.
Oberwolfach Reports. 2018;14(2):1681-1745. doi:10.4171/owr/2017/27
apa: Koch, H., Raphaël, P., Tataru, D., & Vişan, M. (2018). Nonlinear waves
and dispersive equations. Oberwolfach Reports. EMS Press. https://doi.org/10.4171/owr/2017/27
chicago: Koch, Herbert, Pierre Raphaël, Daniel Tataru, and Monica Vişan. “Nonlinear
Waves and Dispersive Equations.” Oberwolfach Reports. EMS Press, 2018.
https://doi.org/10.4171/owr/2017/27.
ieee: H. Koch, P. Raphaël, D. Tataru, and M. Vişan, “Nonlinear waves and dispersive
equations,” Oberwolfach Reports, vol. 14, no. 2. EMS Press, pp. 1681–1745,
2018.
ista: Koch H, Raphaël P, Tataru D, Vişan M. 2018. Nonlinear waves and dispersive
equations. Oberwolfach Reports. 14(2), 1681–1745.
mla: Koch, Herbert, et al. “Nonlinear Waves and Dispersive Equations.” Oberwolfach
Reports, vol. 14, no. 2, EMS Press, 2018, pp. 1681–745, doi:10.4171/owr/2017/27.
short: H. Koch, P. Raphaël, D. Tataru, M. Vişan, Oberwolfach Reports 14 (2018) 1681–1745.
das_tickbox: '1'
date_created: 2026-06-19T08:55:08Z
date_published: 2018-04-28T00:00:00Z
date_updated: 2026-07-02T05:51:37Z
day: '28'
doi: 10.4171/owr/2017/27
extern: '1'
fulldoi: https://doi.org/10.4171/owr/2017/27
intvolume: ' 14'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.4171/OWR/2017/27
month: '04'
oa: 1
oa_version: Published Version
page: 1681-1745
publication: Oberwolfach Reports
publication_identifier:
eissn:
- 1660-8941
issn:
- 1660-8933
publication_status: published
publisher: EMS Press
quality_controlled: '1'
status: public
title: Nonlinear waves and dispersive equations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2018'
...
---
_id: '5992'
abstract:
- lang: eng
text: Lamellipodia are flat membrane protrusions formed during mesenchymal motion.
Polymerization at the leading edge assembles the actin filament network and generates
protrusion force. How this force is supported by the network and how the assembly
rate is shared between protrusion and network retrograde flow determines the protrusion
rate. We use mathematical modeling to understand experiments changing the F-actin
density in lamellipodia of B16-F1 melanoma cells by modulation of Arp2/3 complex
activity or knockout of the formins FMNL2 and FMNL3. Cells respond to a reduction
of density with a decrease of protrusion velocity, an increase in the ratio of
force to filament number, but constant network assembly rate. The relation between
protrusion force and tension gradient in the F-actin network and the density dependency
of friction, elasticity, and viscosity of the network explain the experimental
observations. The formins act as filament nucleators and elongators with differential
rates. Modulation of their activity suggests an effect on network assembly rate.
Contrary to these expectations, the effect of changes in elongator composition
is much weaker than the consequences of the density change. We conclude that the
force acting on the leading edge membrane is the force required to drive F-actin
network retrograde flow.
article_processing_charge: No
author:
- first_name: Setareh
full_name: Dolati, Setareh
last_name: Dolati
- first_name: Frieda
full_name: Kage, Frieda
last_name: Kage
- first_name: Jan
full_name: Mueller, Jan
last_name: Mueller
- first_name: Mathias
full_name: Müsken, Mathias
last_name: Müsken
- first_name: Marieluise
full_name: Kirchner, Marieluise
last_name: Kirchner
- first_name: Gunnar
full_name: Dittmar, Gunnar
last_name: Dittmar
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
- first_name: Klemens
full_name: Rottner, Klemens
last_name: Rottner
- first_name: Martin
full_name: Falcke, Martin
last_name: Falcke
citation:
ama: Dolati S, Kage F, Mueller J, et al. On the relation between filament density,
force generation, and protrusion rate in mesenchymal cell motility. Molecular
Biology of the Cell. 2018;29(22):2674-2686. doi:10.1091/mbc.e18-02-0082
apa: Dolati, S., Kage, F., Mueller, J., Müsken, M., Kirchner, M., Dittmar, G., …
Falcke, M. (2018). On the relation between filament density, force generation,
and protrusion rate in mesenchymal cell motility. Molecular Biology of the
Cell. American Society for Cell Biology. https://doi.org/10.1091/mbc.e18-02-0082
chicago: Dolati, Setareh, Frieda Kage, Jan Mueller, Mathias Müsken, Marieluise Kirchner,
Gunnar Dittmar, Michael K Sixt, Klemens Rottner, and Martin Falcke. “On the Relation
between Filament Density, Force Generation, and Protrusion Rate in Mesenchymal
Cell Motility.” Molecular Biology of the Cell. American Society for Cell
Biology, 2018. https://doi.org/10.1091/mbc.e18-02-0082.
ieee: S. Dolati et al., “On the relation between filament density, force
generation, and protrusion rate in mesenchymal cell motility,” Molecular Biology
of the Cell, vol. 29, no. 22. American Society for Cell Biology, pp. 2674–2686,
2018.
ista: Dolati S, Kage F, Mueller J, Müsken M, Kirchner M, Dittmar G, Sixt MK, Rottner
K, Falcke M. 2018. On the relation between filament density, force generation,
and protrusion rate in mesenchymal cell motility. Molecular Biology of the Cell.
29(22), 2674–2686.
mla: Dolati, Setareh, et al. “On the Relation between Filament Density, Force Generation,
and Protrusion Rate in Mesenchymal Cell Motility.” Molecular Biology of the
Cell, vol. 29, no. 22, American Society for Cell Biology, 2018, pp. 2674–86,
doi:10.1091/mbc.e18-02-0082.
short: S. Dolati, F. Kage, J. Mueller, M. Müsken, M. Kirchner, G. Dittmar, M.K.
Sixt, K. Rottner, M. Falcke, Molecular Biology of the Cell 29 (2018) 2674–2686.
das_tickbox: '1'
date_created: 2019-02-14T12:25:47Z
date_published: 2018-11-01T00:00:00Z
date_updated: 2026-07-06T12:25:34Z
day: '01'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1091/mbc.e18-02-0082
external_id:
isi:
- '000455641000011'
pmid:
- '30156465'
file:
- access_level: open_access
checksum: e98465b4416b3e804c47f40086932af2
content_type: application/pdf
creator: kschuh
date_created: 2019-02-14T12:34:29Z
date_updated: 2020-07-14T12:47:15Z
file_id: '5994'
file_name: 2018_ASCB_Dolati.pdf
file_size: 6668971
relation: main_file
file_date_updated: 2020-07-14T12:47:15Z
fulldoi: https://doi.org/10.1091/mbc.e18-02-0082
has_accepted_license: '1'
intvolume: ' 29'
isi: 1
issue: '22'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '11'
oa: 1
oa_version: Published Version
page: 2674-2686
pmid: 1
publication: Molecular Biology of the Cell
publication_identifier:
eissn:
- 1939-4586
publication_status: published
publisher: American Society for Cell Biology
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the relation between filament density, force generation, and protrusion
rate in mesenchymal cell motility
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2018'
...
---
_id: '8547'
abstract:
- lang: eng
text: The cerebral cortex contains multiple hierarchically organized areas with
distinctive cytoarchitectonical patterns, but the cellular mechanisms underlying
the emergence of this diversity remain unclear. Here, we have quantitatively investigated
the neuronal output of individual progenitor cells in the ventricular zone of
the developing mouse neocortex using a combination of methods that together circumvent
the biases and limitations of individual approaches. We found that individual
cortical progenitor cells show a high degree of stochasticity and generate pyramidal
cell lineages that adopt a wide range of laminar configurations. Mathematical
modelling these lineage data suggests that a small number of progenitor cell populations,
each generating pyramidal cells following different stochastic developmental programs,
suffice to generate the heterogenous complement of pyramidal cell lineages that
collectively build the complex cytoarchitecture of the neocortex.
acknowledgement: We thank I. Andrew and S.E. Bae for excellent technical assistance,
F. Gage for plasmids, and K. Nave (Nex-Cre) for mouse colonies. We thank members
of the Marín and Rico laboratories for stimulating discussions and ideas. Our research
on this topic is supported by grants from the European Research Council (ERC-2017-AdG
787355 to O.M and ERC2016-CoG 725780 to S.H.) and Wellcome Trust (103714MA) to O.M.
L.L. was the recipient of an EMBO long-term postdoctoral fellowship, R.B. received
support from FWF Lise-Meitner program (M 2416) and F.K.W. was supported by an EMBO
postdoctoral fellowship and is currently a Marie Skłodowska-Curie Fellow from the
European Commission under the H2020 Programme.
article_processing_charge: No
author:
- first_name: Alfredo
full_name: Llorca, Alfredo
last_name: Llorca
- first_name: Gabriele
full_name: Ciceri, Gabriele
last_name: Ciceri
- first_name: Robert J
full_name: Beattie, Robert J
id: 2E26DF60-F248-11E8-B48F-1D18A9856A87
last_name: Beattie
orcid: 0000-0002-8483-8753
- first_name: Fong K.
full_name: Wong, Fong K.
last_name: Wong
- first_name: Giovanni
full_name: Diana, Giovanni
last_name: Diana
- first_name: Eleni
full_name: Serafeimidou, Eleni
last_name: Serafeimidou
- first_name: Marian
full_name: Fernández-Otero, Marian
last_name: Fernández-Otero
- first_name: Carmen
full_name: Streicher, Carmen
id: 36BCB99C-F248-11E8-B48F-1D18A9856A87
last_name: Streicher
- first_name: Sebastian J.
full_name: Arnold, Sebastian J.
last_name: Arnold
- first_name: Martin
full_name: Meyer, Martin
last_name: Meyer
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Miguel
full_name: Maravall, Miguel
last_name: Maravall
- first_name: Oscar
full_name: Marín, Oscar
last_name: Marín
citation:
ama: Llorca A, Ciceri G, Beattie RJ, et al. Heterogeneous progenitor cell behaviors
underlie the assembly of neocortical cytoarchitecture. bioRxiv. doi:10.1101/494088
apa: Llorca, A., Ciceri, G., Beattie, R. J., Wong, F. K., Diana, G., Serafeimidou,
E., … Marín, O. (n.d.). Heterogeneous progenitor cell behaviors underlie the assembly
of neocortical cytoarchitecture. bioRxiv. https://doi.org/10.1101/494088
chicago: Llorca, Alfredo, Gabriele Ciceri, Robert J Beattie, Fong K. Wong, Giovanni
Diana, Eleni Serafeimidou, Marian Fernández-Otero, et al. “Heterogeneous Progenitor
Cell Behaviors Underlie the Assembly of Neocortical Cytoarchitecture.” BioRxiv,
n.d. https://doi.org/10.1101/494088.
ieee: A. Llorca et al., “Heterogeneous progenitor cell behaviors underlie
the assembly of neocortical cytoarchitecture,” bioRxiv. .
ista: Llorca A, Ciceri G, Beattie RJ, Wong FK, Diana G, Serafeimidou E, Fernández-Otero
M, Streicher C, Arnold SJ, Meyer M, Hippenmeyer S, Maravall M, Marín O. Heterogeneous
progenitor cell behaviors underlie the assembly of neocortical cytoarchitecture.
bioRxiv, 10.1101/494088.
mla: Llorca, Alfredo, et al. “Heterogeneous Progenitor Cell Behaviors Underlie the
Assembly of Neocortical Cytoarchitecture.” BioRxiv, doi:10.1101/494088.
short: A. Llorca, G. Ciceri, R.J. Beattie, F.K. Wong, G. Diana, E. Serafeimidou,
M. Fernández-Otero, C. Streicher, S.J. Arnold, M. Meyer, S. Hippenmeyer, M. Maravall,
O. Marín, BioRxiv (n.d.).
das_tickbox: '1'
date_created: 2020-09-21T12:01:50Z
date_published: 2018-12-13T00:00:00Z
date_updated: 2026-07-06T12:52:50Z
day: '13'
department:
- _id: SiHi
doi: 10.1101/494088
ec_funded: 1
fulldoi: https://doi.org/10.1101/494088
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/494088
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '725780'
name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 264E56E2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02416
name: Molecular Mechanisms Regulating Gliogenesis in the Neocortex
publication: bioRxiv
publication_status: submitted
status: public
title: Heterogeneous progenitor cell behaviors underlie the assembly of neocortical
cytoarchitecture
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
OA_place: publisher
OA_type: diamond
_id: '10286'
abstract:
- lang: eng
text: 'In this paper, we evaluate clock signals generated in ring oscillators and
self-timed rings and the way their jitter can be transformed into random numbers.
We show that counting the periods of the jittery clock signal produces random
numbers of significantly better quality than the methods in which the jittery
signal is simply sampled (the case in almost all current methods). Moreover, we
use the counter values to characterize and continuously monitor the source of
randomness. However, instead of using the widely used statistical variance, we
propose to use Allan variance to do so. There are two main advantages: Allan variance
is insensitive to low frequency noises such as flicker noise that are known to
be autocorrelated and significantly less circuitry is required for its computation
than that used to compute commonly used variance. We also show that it is essential
to use a differential principle of randomness extraction from the jitter based
on the use of two identical oscillators to avoid autocorrelations originating
from external and internal global jitter sources and that this fact is valid for
both kinds of rings. Last but not least, we propose a method of statistical testing
based on high order Markov model to show the reduced dependencies when the proposed
randomness extraction is applied.'
article_processing_charge: No
article_type: original
author:
- first_name: Elie Noumon
full_name: Allini, Elie Noumon
last_name: Allini
- first_name: Maciej
full_name: Skórski, Maciej
id: EC09FA6A-02D0-11E9-8223-86B7C91467DD
last_name: Skórski
- first_name: Oto
full_name: Petura, Oto
last_name: Petura
- first_name: Florent
full_name: Bernard, Florent
last_name: Bernard
- first_name: Marek
full_name: Laban, Marek
last_name: Laban
- first_name: Viktor
full_name: Fischer, Viktor
last_name: Fischer
citation:
ama: Allini EN, Skórski M, Petura O, Bernard F, Laban M, Fischer V. Evaluation and
monitoring of free running oscillators serving as source of randomness. IACR
Transactions on Cryptographic Hardware and Embedded Systems. 2018;2018(3):214-242.
doi:10.13154/tches.v2018.i3.214-242
apa: Allini, E. N., Skórski, M., Petura, O., Bernard, F., Laban, M., & Fischer,
V. (2018). Evaluation and monitoring of free running oscillators serving as source
of randomness. IACR Transactions on Cryptographic Hardware and Embedded Systems.
International Association for Cryptologic Research. https://doi.org/10.13154/tches.v2018.i3.214-242
chicago: Allini, Elie Noumon, Maciej Skórski, Oto Petura, Florent Bernard, Marek
Laban, and Viktor Fischer. “Evaluation and Monitoring of Free Running Oscillators
Serving as Source of Randomness.” IACR Transactions on Cryptographic Hardware
and Embedded Systems. International Association for Cryptologic Research,
2018. https://doi.org/10.13154/tches.v2018.i3.214-242.
ieee: E. N. Allini, M. Skórski, O. Petura, F. Bernard, M. Laban, and V. Fischer,
“Evaluation and monitoring of free running oscillators serving as source of randomness,”
IACR Transactions on Cryptographic Hardware and Embedded Systems, vol.
2018, no. 3. International Association for Cryptologic Research, pp. 214–242,
2018.
ista: Allini EN, Skórski M, Petura O, Bernard F, Laban M, Fischer V. 2018. Evaluation
and monitoring of free running oscillators serving as source of randomness. IACR
Transactions on Cryptographic Hardware and Embedded Systems. 2018(3), 214–242.
mla: Allini, Elie Noumon, et al. “Evaluation and Monitoring of Free Running Oscillators
Serving as Source of Randomness.” IACR Transactions on Cryptographic Hardware
and Embedded Systems, vol. 2018, no. 3, International Association for Cryptologic
Research, 2018, pp. 214–42, doi:10.13154/tches.v2018.i3.214-242.
short: E.N. Allini, M. Skórski, O. Petura, F. Bernard, M. Laban, V. Fischer, IACR
Transactions on Cryptographic Hardware and Embedded Systems 2018 (2018) 214–242.
corr_author: '1'
das_tickbox: '1'
date_created: 2021-11-14T23:01:25Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2026-07-06T13:16:35Z
day: '01'
ddc:
- '000'
department:
- _id: KrPi
doi: 10.13154/tches.v2018.i3.214-242
file:
- access_level: open_access
checksum: b816b848f046c48a8357700d9305dce5
content_type: application/pdf
creator: cchlebak
date_created: 2021-11-15T10:27:29Z
date_updated: 2021-11-15T10:27:29Z
file_id: '10289'
file_name: 2018_IACR_Allini.pdf
file_size: 955755
relation: main_file
success: 1
file_date_updated: 2021-11-15T10:27:29Z
fulldoi: https://doi.org/10.13154/tches.v2018.i3.214-242
has_accepted_license: '1'
intvolume: ' 2018'
issue: '3'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 214-242
publication: IACR Transactions on Cryptographic Hardware and Embedded Systems
publication_identifier:
eissn:
- 2569-2925
publication_status: published
publisher: International Association for Cryptologic Research
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evaluation and monitoring of free running oscillators serving as source of
randomness
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2018
year: '2018'
...
---
_id: '5995'
abstract:
- lang: eng
text: "Motivation\r\nComputational prediction of the effect of mutations on protein
stability is used by researchers in many fields. The utility of the prediction
methods is affected by their accuracy and bias. Bias, a systematic shift of the
predicted change of stability, has been noted as an issue for several methods,
but has not been investigated systematically. Presence of the bias may lead to
misleading results especially when exploring the effects of combination of different
mutations.\r\n\r\nResults\r\nHere we use a protocol to measure the bias as a function
of the number of introduced mutations. It is based on a self-consistency test
of the reciprocity the effect of a mutation. An advantage of the used approach
is that it relies solely on crystal structures without experimentally measured
stability values. We applied the protocol to four popular algorithms predicting
change of protein stability upon mutation, FoldX, Eris, Rosetta and I-Mutant,
and found an inherent bias. For one program, FoldX, we manage to substantially
reduce the bias using additional relaxation by Modeller. Authors using algorithms
for predicting effects of mutations should be aware of the bias described here."
article_processing_charge: No
author:
- first_name: Dinara R
full_name: Usmanova, Dinara R
last_name: Usmanova
- first_name: Natalya S
full_name: Bogatyreva, Natalya S
last_name: Bogatyreva
- first_name: Joan
full_name: Ariño Bernad, Joan
last_name: Ariño Bernad
- first_name: Aleksandra A
full_name: Eremina, Aleksandra A
last_name: Eremina
- first_name: Anastasiya A
full_name: Gorshkova, Anastasiya A
last_name: Gorshkova
- first_name: German M
full_name: Kanevskiy, German M
last_name: Kanevskiy
- first_name: Lyubov R
full_name: Lonishin, Lyubov R
last_name: Lonishin
- first_name: Alexander V
full_name: Meister, Alexander V
last_name: Meister
- first_name: Alisa G
full_name: Yakupova, Alisa G
last_name: Yakupova
- first_name: Fyodor
full_name: Kondrashov, Fyodor
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
- first_name: Dmitry
full_name: Ivankov, Dmitry
id: 49FF1036-F248-11E8-B48F-1D18A9856A87
last_name: Ivankov
orcid: 0000-0002-8224-4118
citation:
ama: Usmanova DR, Bogatyreva NS, Ariño Bernad J, et al. Self-consistency test reveals
systematic bias in programs for prediction change of stability upon mutation.
Bioinformatics. 2018;34(21):3653-3658. doi:10.1093/bioinformatics/bty340
apa: Usmanova, D. R., Bogatyreva, N. S., Ariño Bernad, J., Eremina, A. A., Gorshkova,
A. A., Kanevskiy, G. M., … Ivankov, D. (2018). Self-consistency test reveals systematic
bias in programs for prediction change of stability upon mutation. Bioinformatics.
Oxford University Press. https://doi.org/10.1093/bioinformatics/bty340
chicago: Usmanova, Dinara R, Natalya S Bogatyreva, Joan Ariño Bernad, Aleksandra
A Eremina, Anastasiya A Gorshkova, German M Kanevskiy, Lyubov R Lonishin, et al.
“Self-Consistency Test Reveals Systematic Bias in Programs for Prediction Change
of Stability upon Mutation.” Bioinformatics. Oxford University Press, 2018.
https://doi.org/10.1093/bioinformatics/bty340.
ieee: D. R. Usmanova et al., “Self-consistency test reveals systematic bias
in programs for prediction change of stability upon mutation,” Bioinformatics,
vol. 34, no. 21. Oxford University Press, pp. 3653–3658, 2018.
ista: Usmanova DR, Bogatyreva NS, Ariño Bernad J, Eremina AA, Gorshkova AA, Kanevskiy
GM, Lonishin LR, Meister AV, Yakupova AG, Kondrashov F, Ivankov D. 2018. Self-consistency
test reveals systematic bias in programs for prediction change of stability upon
mutation. Bioinformatics. 34(21), 3653–3658.
mla: Usmanova, Dinara R., et al. “Self-Consistency Test Reveals Systematic Bias
in Programs for Prediction Change of Stability upon Mutation.” Bioinformatics,
vol. 34, no. 21, Oxford University Press, 2018, pp. 3653–58, doi:10.1093/bioinformatics/bty340.
short: D.R. Usmanova, N.S. Bogatyreva, J. Ariño Bernad, A.A. Eremina, A.A. Gorshkova,
G.M. Kanevskiy, L.R. Lonishin, A.V. Meister, A.G. Yakupova, F. Kondrashov, D.
Ivankov, Bioinformatics 34 (2018) 3653–3658.
das_tickbox: '1'
date_created: 2019-02-14T12:48:00Z
date_published: 2018-11-01T00:00:00Z
date_updated: 2026-07-06T13:48:02Z
day: '01'
ddc:
- '570'
department:
- _id: FyKo
doi: 10.1093/bioinformatics/bty340
ec_funded: 1
external_id:
isi:
- '000450038900008'
pmid:
- '29722803'
file:
- access_level: open_access
checksum: 7e0495153f44211479674601d7f6ee03
content_type: application/pdf
creator: kschuh
date_created: 2019-02-14T13:00:55Z
date_updated: 2020-07-14T12:47:15Z
file_id: '5997'
file_name: 2018_Oxford_Usmanova.pdf
file_size: 291969
relation: main_file
file_date_updated: 2020-07-14T12:47:15Z
fulldoi: https://doi.org/10.1093/bioinformatics/bty340
has_accepted_license: '1'
intvolume: ' 34'
isi: 1
issue: '21'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '11'
oa: 1
oa_version: Published Version
page: 3653-3658
pmid: 1
project:
- _id: 26120F5C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '335980'
name: Systematic investigation of epistasis in molecular evolution
publication: Bioinformatics
publication_identifier:
eissn:
- 1367-4811
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-consistency test reveals systematic bias in programs for prediction change
of stability upon mutation
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2018'
...
---
_id: '404'
abstract:
- lang: eng
text: "We construct martingale solutions to stochastic thin-film equations by introducing
a (spatial) semidiscretization and establishing convergence. The discrete scheme
allows for variants of the energy and entropy estimates in the continuous setting
as long as the discrete energy does not exceed certain threshold values depending
on the spatial grid size $h$. Using a stopping time argument to prolongate high-energy
paths constant in time, arbitrary moments of coupled energy/entropy functionals
can be controlled. Having established Hölder regularity of approximate solutions,
the convergence proof is then based on compactness arguments---in particular on
Jakubowski's generalization of Skorokhod's theorem---weak convergence methods,
and recent tools on martingale convergence.\r\n\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
- first_name: Günther
full_name: Grün, Günther
last_name: Grün
citation:
ama: Fischer JL, Grün G. Existence of positive solutions to stochastic thin-film
equations. SIAM Journal on Mathematical Analysis. 2018;50(1):411-455. doi:10.1137/16M1098796
apa: Fischer, J. L., & Grün, G. (2018). Existence of positive solutions to stochastic
thin-film equations. SIAM Journal on Mathematical Analysis. Society for
Industrial and Applied Mathematics. https://doi.org/10.1137/16M1098796
chicago: Fischer, Julian L, and Günther Grün. “Existence of Positive Solutions to
Stochastic Thin-Film Equations.” SIAM Journal on Mathematical Analysis.
Society for Industrial and Applied Mathematics, 2018. https://doi.org/10.1137/16M1098796.
ieee: J. L. Fischer and G. Grün, “Existence of positive solutions to stochastic
thin-film equations,” SIAM Journal on Mathematical Analysis, vol. 50, no.
1. Society for Industrial and Applied Mathematics, pp. 411–455, 2018.
ista: Fischer JL, Grün G. 2018. Existence of positive solutions to stochastic thin-film
equations. SIAM Journal on Mathematical Analysis. 50(1), 411–455.
mla: Fischer, Julian L., and Günther Grün. “Existence of Positive Solutions to Stochastic
Thin-Film Equations.” SIAM Journal on Mathematical Analysis, vol. 50, no.
1, Society for Industrial and Applied Mathematics, 2018, pp. 411–55, doi:10.1137/16M1098796.
short: J.L. Fischer, G. Grün, SIAM Journal on Mathematical Analysis 50 (2018) 411–455.
corr_author: '1'
das_tickbox: '1'
date_created: 2018-12-11T11:46:17Z
date_published: 2018-01-30T00:00:00Z
date_updated: 2026-07-06T14:01:18Z
day: '30'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1137/16M1098796
external_id:
isi:
- '000426630900015'
file:
- access_level: open_access
checksum: 89a8eae7c52bb356c04f52b44bff4b5a
content_type: application/pdf
creator: dernst
date_created: 2019-11-07T12:20:25Z
date_updated: 2020-07-14T12:46:22Z
file_id: '6992'
file_name: 2018_SIAM_Fischer.pdf
file_size: 557338
relation: main_file
file_date_updated: 2020-07-14T12:46:22Z
fulldoi: https://doi.org/10.1137/16M1098796
has_accepted_license: '1'
intvolume: ' 50'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 411 - 455
publication: SIAM Journal on Mathematical Analysis
publication_status: published
publisher: Society for Industrial and Applied Mathematics
publist_id: '7425'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Existence of positive solutions to stochastic thin-film equations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2018'
...
---
_id: '181'
abstract:
- lang: eng
text: We consider large random matrices X with centered, independent entries but
possibly di erent variances. We compute the normalized trace of f(X)g(X∗) for
f, g functions analytic on the spectrum of X. We use these results to compute
the long time asymptotics for systems of coupled di erential equations with random
coe cients. We show that when the coupling is critical, the norm squared of the
solution decays like t−1/2.
acknowledgement: The work of the second author was also partially supported by the
Hausdorff Center of Mathematics.
article_processing_charge: No
arxiv: 1
author:
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Torben H
full_name: Krüger, Torben H
id: 3020C786-F248-11E8-B48F-1D18A9856A87
last_name: Krüger
orcid: 0000-0002-4821-3297
- first_name: David T
full_name: Renfrew, David T
id: 4845BF6A-F248-11E8-B48F-1D18A9856A87
last_name: Renfrew
orcid: 0000-0003-3493-121X
citation:
ama: Erdös L, Krüger TH, Renfrew DT. Power law decay for systems of randomly coupled
differential equations. SIAM Journal on Mathematical Analysis. 2018;50(3):3271-3290.
doi:10.1137/17M1143125
apa: Erdös, L., Krüger, T. H., & Renfrew, D. T. (2018). Power law decay for
systems of randomly coupled differential equations. SIAM Journal on Mathematical
Analysis. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/17M1143125
chicago: Erdös, László, Torben H Krüger, and David T Renfrew. “Power Law Decay for
Systems of Randomly Coupled Differential Equations.” SIAM Journal on Mathematical
Analysis. Society for Industrial and Applied Mathematics, 2018. https://doi.org/10.1137/17M1143125.
ieee: L. Erdös, T. H. Krüger, and D. T. Renfrew, “Power law decay for systems of
randomly coupled differential equations,” SIAM Journal on Mathematical Analysis,
vol. 50, no. 3. Society for Industrial and Applied Mathematics, pp. 3271–3290,
2018.
ista: Erdös L, Krüger TH, Renfrew DT. 2018. Power law decay for systems of randomly
coupled differential equations. SIAM Journal on Mathematical Analysis. 50(3),
3271–3290.
mla: Erdös, László, et al. “Power Law Decay for Systems of Randomly Coupled Differential
Equations.” SIAM Journal on Mathematical Analysis, vol. 50, no. 3, Society
for Industrial and Applied Mathematics, 2018, pp. 3271–90, doi:10.1137/17M1143125.
short: L. Erdös, T.H. Krüger, D.T. Renfrew, SIAM Journal on Mathematical Analysis
50 (2018) 3271–3290.
das_tickbox: '1'
date_created: 2018-12-11T11:45:03Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2026-07-06T14:02:06Z
day: '01'
ddc:
- '500'
department:
- _id: LaEr
doi: 10.1137/17M1143125
ec_funded: 1
external_id:
arxiv:
- '1708.01546'
isi:
- '000437018500032'
fulldoi: https://doi.org/10.1137/17M1143125
intvolume: ' 50'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1708.01546
month: '01'
oa: 1
oa_version: Published Version
page: 3271 - 3290
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
- _id: 258F40A4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02080
name: Structured Non-Hermitian Random Matrices
publication: SIAM Journal on Mathematical Analysis
publication_status: published
publisher: Society for Industrial and Applied Mathematics
publist_id: '7740'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Power law decay for systems of randomly coupled differential equations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2018'
...
---
_id: '312'
abstract:
- lang: eng
text: Motivated by biological questions, we study configurations of equal spheres
that neither pack nor cover. Placing their centers on a lattice, we define the
soft density of the configuration by penalizing multiple overlaps. Considering
the 1-parameter family of diagonally distorted 3-dimensional integer lattices,
we show that the soft density is maximized at the FCC lattice.
acknowledgement: This work was partially supported by the DFG Collaborative Research
Center TRR 109, “Discretization in Geometry and Dynamics,” through grant I02979-N35
of the Austrian Science Fund (FWF).
article_processing_charge: No
article_type: original
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Mabel
full_name: Iglesias Ham, Mabel
id: 41B58C0C-F248-11E8-B48F-1D18A9856A87
last_name: Iglesias Ham
citation:
ama: Edelsbrunner H, Iglesias Ham M. On the optimality of the FCC lattice for soft
sphere packing. SIAM J Discrete Math. 2018;32(1):750-782. doi:10.1137/16M1097201
apa: Edelsbrunner, H., & Iglesias Ham, M. (2018). On the optimality of the FCC
lattice for soft sphere packing. SIAM J Discrete Math. Society for Industrial
and Applied Mathematics. https://doi.org/10.1137/16M1097201
chicago: Edelsbrunner, Herbert, and Mabel Iglesias Ham. “On the Optimality of the
FCC Lattice for Soft Sphere Packing.” SIAM J Discrete Math. Society for
Industrial and Applied Mathematics, 2018. https://doi.org/10.1137/16M1097201.
ieee: H. Edelsbrunner and M. Iglesias Ham, “On the optimality of the FCC lattice
for soft sphere packing,” SIAM J Discrete Math, vol. 32, no. 1. Society
for Industrial and Applied Mathematics, pp. 750–782, 2018.
ista: Edelsbrunner H, Iglesias Ham M. 2018. On the optimality of the FCC lattice
for soft sphere packing. SIAM J Discrete Math. 32(1), 750–782.
mla: Edelsbrunner, Herbert, and Mabel Iglesias Ham. “On the Optimality of the FCC
Lattice for Soft Sphere Packing.” SIAM J Discrete Math, vol. 32, no. 1,
Society for Industrial and Applied Mathematics, 2018, pp. 750–82, doi:10.1137/16M1097201.
short: H. Edelsbrunner, M. Iglesias Ham, SIAM J Discrete Math 32 (2018) 750–782.
das_tickbox: '1'
date_created: 2018-12-11T11:45:46Z
date_published: 2018-03-29T00:00:00Z
date_updated: 2026-07-06T14:00:50Z
day: '29'
department:
- _id: HeEd
doi: 10.1137/16M1097201
external_id:
isi:
- '000428958900038'
fulldoi: https://doi.org/10.1137/16M1097201
intvolume: ' 32'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://pdfs.semanticscholar.org/d2d5/6da00fbc674e6a8b1bb9d857167e54200dc6.pdf
month: '03'
oa: 1
oa_version: Submitted Version
page: 750 - 782
project:
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
publication: SIAM J Discrete Math
publication_identifier:
issn:
- 0895-4801
publication_status: published
publisher: Society for Industrial and Applied Mathematics
publist_id: '7553'
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the optimality of the FCC lattice for soft sphere packing
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2018'
...