[{"OA_type":"gold","doi":"10.37236/8096","file_date_updated":"2020-07-14T12:47:39Z","title":"On grounded L-graphs and their relatives","publication_status":"published","author":[{"full_name":"Jelínek, Vít","first_name":"Vít","last_name":"Jelínek"},{"full_name":"Töpfer, Martin","id":"4B865388-F248-11E8-B48F-1D18A9856A87","last_name":"Töpfer","first_name":"Martin"}],"date_published":"2019-07-19T00:00:00Z","file":[{"file_name":"2019_eJourCombinatorics_Jelinek.pdf","access_level":"open_access","file_id":"6764","file_size":533697,"content_type":"application/pdf","checksum":"20fc366fc6683ef0b074a019b73a663a","date_updated":"2020-07-14T12:47:39Z","relation":"main_file","date_created":"2019-08-05T06:46:55Z","creator":"dernst"}],"citation":{"apa":"Jelínek, V., &#38; Töpfer, M. (2019). On grounded L-graphs and their relatives. <i>Electronic Journal of Combinatorics</i>. Electronic Journal of Combinatorics. <a href=\"https://doi.org/10.37236/8096\">https://doi.org/10.37236/8096</a>","chicago":"Jelínek, Vít, and Martin Töpfer. “On Grounded L-Graphs and Their Relatives.” <i>Electronic Journal of Combinatorics</i>. Electronic Journal of Combinatorics, 2019. <a href=\"https://doi.org/10.37236/8096\">https://doi.org/10.37236/8096</a>.","short":"V. Jelínek, M. Töpfer, Electronic Journal of Combinatorics 26 (2019).","mla":"Jelínek, Vít, and Martin Töpfer. “On Grounded L-Graphs and Their Relatives.” <i>Electronic Journal of Combinatorics</i>, vol. 26, no. 3, P3.17, Electronic Journal of Combinatorics, 2019, doi:<a href=\"https://doi.org/10.37236/8096\">10.37236/8096</a>.","ama":"Jelínek V, Töpfer M. On grounded L-graphs and their relatives. <i>Electronic Journal of Combinatorics</i>. 2019;26(3). doi:<a href=\"https://doi.org/10.37236/8096\">10.37236/8096</a>","ista":"Jelínek V, Töpfer M. 2019. On grounded L-graphs and their relatives. Electronic Journal of Combinatorics. 26(3), P3.17.","ieee":"V. Jelínek and M. Töpfer, “On grounded L-graphs and their relatives,” <i>Electronic Journal of Combinatorics</i>, vol. 26, no. 3. Electronic Journal of Combinatorics, 2019."},"department":[{"_id":"DaAl"}],"status":"public","oa_version":"Published Version","ec_funded":1,"language":[{"iso":"eng"}],"date_created":"2019-08-04T21:59:20Z","intvolume":"        26","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"_id":"6759","date_updated":"2025-06-26T12:25:39Z","quality_controlled":"1","article_number":"P3.17","issue":"3","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2019","fulldoi":"https://doi.org/10.37236/8096","project":[{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program"}],"type":"journal_article","article_type":"original","arxiv":1,"article_processing_charge":"Yes","DOAJ_listed":"1","oa":1,"OA_place":"publisher","publication":"Electronic Journal of Combinatorics","external_id":{"arxiv":["1808.04148"]},"month":"07","scopus_import":"1","abstract":[{"text":"We consider the graph class Grounded-L corresponding to graphs that admit an intersection representation by L-shaped curves, where additionally the topmost points of each curve are assumed to belong to a common horizontal line. We prove that Grounded-L graphs admit an equivalent characterisation in terms of vertex ordering with forbidden patterns. \r\nWe also compare this class to related intersection classes, such as the grounded segment graphs, the monotone L-graphs (a.k.a. max point-tolerance graphs), or the outer-1-string graphs. We give constructions showing that these classes are all distinct and satisfy only trivial or previously known inclusions.","lang":"eng"}],"publication_identifier":{"eissn":["1077-8926"]},"volume":26,"day":"19","has_accepted_license":"1","ddc":["510"],"corr_author":"1","publisher":"Electronic Journal of Combinatorics"},{"status":"public","department":[{"_id":"JuFi"}],"main_file_link":[{"url":"https://arxiv.org/abs/1808.04200","open_access":"1"}],"citation":{"chicago":"Friesecke, Gero, and Michael Kniely. “New Optimal Control Problems in Density Functional Theory Motivated by Photovoltaics.” <i>Multiscale Modeling and Simulation</i>. SIAM, 2019. <a href=\"https://doi.org/10.1137/18M1207272\">https://doi.org/10.1137/18M1207272</a>.","apa":"Friesecke, G., &#38; Kniely, M. (2019). New optimal control problems in density functional theory motivated by photovoltaics. <i>Multiscale Modeling and Simulation</i>. SIAM. <a href=\"https://doi.org/10.1137/18M1207272\">https://doi.org/10.1137/18M1207272</a>","short":"G. Friesecke, M. Kniely, Multiscale Modeling and Simulation 17 (2019) 926–947.","ista":"Friesecke G, Kniely M. 2019. New optimal control problems in density functional theory motivated by photovoltaics. Multiscale Modeling and Simulation. 17(3), 926–947.","ama":"Friesecke G, Kniely M. New optimal control problems in density functional theory motivated by photovoltaics. <i>Multiscale Modeling and Simulation</i>. 2019;17(3):926-947. doi:<a href=\"https://doi.org/10.1137/18M1207272\">10.1137/18M1207272</a>","mla":"Friesecke, Gero, and Michael Kniely. “New Optimal Control Problems in Density Functional Theory Motivated by Photovoltaics.” <i>Multiscale Modeling and Simulation</i>, vol. 17, no. 3, SIAM, 2019, pp. 926–47, doi:<a href=\"https://doi.org/10.1137/18M1207272\">10.1137/18M1207272</a>.","ieee":"G. Friesecke and M. Kniely, “New optimal control problems in density functional theory motivated by photovoltaics,” <i>Multiscale Modeling and Simulation</i>, vol. 17, no. 3. SIAM, pp. 926–947, 2019."},"language":[{"iso":"eng"}],"oa_version":"Preprint","quality_controlled":"1","date_updated":"2025-07-10T11:53:49Z","_id":"6762","intvolume":"        17","date_created":"2019-08-04T21:59:21Z","title":"New optimal control problems in density functional theory motivated by photovoltaics","isi":1,"doi":"10.1137/18M1207272","author":[{"full_name":"Friesecke, Gero","last_name":"Friesecke","first_name":"Gero"},{"full_name":"Kniely, Michael","first_name":"Michael","id":"2CA2C08C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5645-4333","last_name":"Kniely"}],"date_published":"2019-07-16T00:00:00Z","publication_status":"published","page":"926-947","publication":"Multiscale Modeling and Simulation","external_id":{"isi":["000487931800002"],"arxiv":["1808.04200"]},"oa":1,"arxiv":1,"article_processing_charge":"No","month":"07","day":"16","volume":17,"publication_identifier":{"issn":["1540-3459"],"eissn":["1540-3467"]},"abstract":[{"lang":"eng","text":"We present and study novel optimal control problems motivated by the search for photovoltaic materials with high power-conversion efficiency. The material must perform the first step: convert light (photons) into electronic excitations. We formulate various desirable properties of the excitations as mathematical control goals at the Kohn-Sham-DFT level\r\nof theory, with the control being given by the nuclear charge distribution. We prove that nuclear distributions exist which give rise to optimal HOMO-LUMO excitations, and present illustrative numerical simulations for 1D finite nanocrystals. We observe pronounced goal-dependent features such as large electron-hole separation, and a hierarchy of length scales: internal HOMO and LUMO wavelengths < atomic spacings < (irregular) fluctuations of the doping profiles < system size."}],"scopus_import":"1","publisher":"SIAM","issue":"3","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","fulldoi":"https://doi.org/10.1137/18M1207272","year":"2019","type":"journal_article"},{"month":"07","external_id":{"pmid":["31305853"],"isi":["000476909200002"]},"publication":"Soft Matter","article_processing_charge":"No","publisher":"Royal Society of Chemistry","volume":15,"day":"15","abstract":[{"lang":"eng","text":"When grape-sized aqueous dimers are irradiated in a microwave oven, an intense electromagnetic hotspot forms at their point of contact, often igniting a plasma. Here we show that this irradiation can result in the injection of mechanical energy. By examining irradiated hydrogel dimers through high-speed imaging, we find that they repeatedly bounce off of each other while irradiated. We determine that an average of 1 lJ of mechanical energy is injected into the pair during each collision. Furthermore, a characteristic high-pitched audio signal is found to accompany each collision.\r\nWe show that both the audio signal and the energy injection arise via an interplay between vaporization and elastic deformations in the region of contact, the so-called ‘elastic Liedenfrost effect’. Our results establish a novel, non-contact method of injecting mechanical energy into soft matter systems, suggesting application in fields such as soft robotics."}],"scopus_import":"1","publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"year":"2019","fulldoi":"https://doi.org/10.1039/c9sm00756c","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"29","article_type":"original","type":"journal_article","language":[{"iso":"eng"}],"oa_version":"None","status":"public","citation":{"ama":"Khattak HK, Waitukaitis SR, Slepkov AD. Microwave induced mechanical activation of hydrogel dimers. <i>Soft Matter</i>. 2019;15(29):5804-5809. doi:<a href=\"https://doi.org/10.1039/c9sm00756c\">10.1039/c9sm00756c</a>","ista":"Khattak HK, Waitukaitis SR, Slepkov AD. 2019. Microwave induced mechanical activation of hydrogel dimers. Soft Matter. 15(29), 5804–5809.","mla":"Khattak, Hamza K., et al. “Microwave Induced Mechanical Activation of Hydrogel Dimers.” <i>Soft Matter</i>, vol. 15, no. 29, Royal Society of Chemistry, 2019, pp. 5804–09, doi:<a href=\"https://doi.org/10.1039/c9sm00756c\">10.1039/c9sm00756c</a>.","ieee":"H. K. Khattak, S. R. Waitukaitis, and A. D. Slepkov, “Microwave induced mechanical activation of hydrogel dimers,” <i>Soft Matter</i>, vol. 15, no. 29. Royal Society of Chemistry, pp. 5804–5809, 2019.","chicago":"Khattak, Hamza K., Scott R Waitukaitis, and Aaron D. Slepkov. “Microwave Induced Mechanical Activation of Hydrogel Dimers.” <i>Soft Matter</i>. Royal Society of Chemistry, 2019. <a href=\"https://doi.org/10.1039/c9sm00756c\">https://doi.org/10.1039/c9sm00756c</a>.","apa":"Khattak, H. K., Waitukaitis, S. R., &#38; Slepkov, A. D. (2019). Microwave induced mechanical activation of hydrogel dimers. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c9sm00756c\">https://doi.org/10.1039/c9sm00756c</a>","short":"H.K. Khattak, S.R. Waitukaitis, A.D. Slepkov, Soft Matter 15 (2019) 5804–5809."},"department":[{"_id":"ScWa"}],"date_updated":"2025-07-10T11:53:49Z","_id":"6763","quality_controlled":"1","date_created":"2019-08-04T21:59:21Z","intvolume":"        15","page":"5804-5809","date_published":"2019-07-15T00:00:00Z","author":[{"last_name":"Khattak","first_name":"Hamza K.","full_name":"Khattak, Hamza K."},{"id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","first_name":"Scott R","full_name":"Waitukaitis, Scott R"},{"first_name":"Aaron D.","last_name":"Slepkov","full_name":"Slepkov, Aaron D."}],"pmid":1,"publication_status":"published","doi":"10.1039/c9sm00756c","isi":1,"title":"Microwave induced mechanical activation of hydrogel dimers"},{"language":[{"iso":"eng"}],"ec_funded":1,"oa_version":"Published Version","status":"public","department":[{"_id":"JiFr"}],"citation":{"mla":"Zhang, Yuzhou, et al. “Evolution of Fast Root Gravitropism in Seed Plants.” <i>Nature Communications</i>, vol. 10, 3480, Springer Nature, 2019, doi:<a href=\"https://doi.org/10.1038/s41467-019-11471-8\">10.1038/s41467-019-11471-8</a>.","ista":"Zhang Y, Xiao G, Wang X, Zhang X, Friml J. 2019. Evolution of fast root gravitropism in seed plants. Nature Communications. 10, 3480.","ama":"Zhang Y, Xiao G, Wang X, Zhang X, Friml J. Evolution of fast root gravitropism in seed plants. <i>Nature Communications</i>. 2019;10. doi:<a href=\"https://doi.org/10.1038/s41467-019-11471-8\">10.1038/s41467-019-11471-8</a>","ieee":"Y. Zhang, G. Xiao, X. Wang, X. Zhang, and J. Friml, “Evolution of fast root gravitropism in seed plants,” <i>Nature Communications</i>, vol. 10. Springer Nature, 2019.","chicago":"Zhang, Yuzhou, G Xiao, X Wang, Xixi Zhang, and Jiří Friml. “Evolution of Fast Root Gravitropism in Seed Plants.” <i>Nature Communications</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41467-019-11471-8\">https://doi.org/10.1038/s41467-019-11471-8</a>.","apa":"Zhang, Y., Xiao, G., Wang, X., Zhang, X., &#38; Friml, J. (2019). Evolution of fast root gravitropism in seed plants. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-019-11471-8\">https://doi.org/10.1038/s41467-019-11471-8</a>","short":"Y. Zhang, G. Xiao, X. Wang, X. Zhang, J. Friml, Nature Communications 10 (2019)."},"article_number":"3480","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_updated":"2025-04-14T07:45:04Z","_id":"6778","intvolume":"        10","date_created":"2019-08-09T08:46:26Z","author":[{"full_name":"Zhang, Yuzhou","first_name":"Yuzhou","orcid":"0000-0003-2627-6956","last_name":"Zhang","id":"3B6137F2-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Xiao, G","first_name":"G","last_name":"Xiao"},{"last_name":"Wang","first_name":"X","full_name":"Wang, X"},{"first_name":"Xixi","id":"61A66458-47E9-11EA-85BA-8AEAAF14E49A","last_name":"Zhang","orcid":"0000-0001-7048-4627","full_name":"Zhang, Xixi"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jiří","full_name":"Friml, Jiří"}],"date_published":"2019-08-02T00:00:00Z","file":[{"file_name":"2019_NatureComm_Zhang.pdf","access_level":"open_access","file_id":"6798","content_type":"application/pdf","file_size":6406141,"checksum":"d2c654fdb97f33078f606fe0c298bf6e","date_updated":"2020-07-14T12:47:40Z","relation":"main_file","date_created":"2019-08-12T07:09:20Z","creator":"dernst"}],"pmid":1,"publication_status":"published","title":"Evolution of fast root gravitropism in seed plants","file_date_updated":"2020-07-14T12:47:40Z","isi":1,"doi":"10.1038/s41467-019-11471-8","related_material":{"link":[{"description":"News on IST Homepage","relation":"press_release","url":"https://ist.ac.at/en/news/when-plant-roots-learned-to-follow-gravity/"}]},"month":"08","external_id":{"pmid":["31375675"],"isi":["000478576500012"]},"publication":"Nature Communications","oa":1,"article_processing_charge":"No","publisher":"Springer Nature","has_accepted_license":"1","ddc":["580"],"day":"02","volume":10,"publication_identifier":{"issn":["2041-1723"]},"scopus_import":"1","abstract":[{"lang":"eng","text":"An important adaptation during colonization of land by plants is gravitropic growth of roots, which enabled roots to reach water and nutrients, and firmly anchor plants in the ground. Here we provide insights into the evolution of an efficient root gravitropic mechanism in the seed plants. Architectural innovation, with gravity perception constrained in the root tips\r\nalong with a shootward transport route for the phytohormone auxin, appeared only upon the emergence of seed plants. Interspecies complementation and protein domain swapping revealed functional innovations within the PIN family of auxin transporters leading to the evolution of gravitropism-specific PINs. The unique apical/shootward subcellular localization of PIN proteins is the major evolutionary innovation that connected the anatomically separated sites of gravity perception and growth response via the mobile auxin signal. We conclude that the crucial anatomical and functional components emerged hand-in-hand to facilitate the evolution of fast gravitropic response, which is one of the major adaptations of seed plants to dry land."}],"project":[{"grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Tracing Evolution of Auxin Transport and Polarity in Plants"},{"grant_number":"I03630","call_identifier":"FWF","_id":"26538374-B435-11E9-9278-68D0E5697425","name":"Molecular mechanisms of endocytic cargo recognition in plants"},{"_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","grant_number":"291734"}],"fulldoi":"https://doi.org/10.1038/s41467-019-11471-8","year":"2019","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_type":"original","type":"journal_article"},{"status":"public","citation":{"short":"B. Suri, R.K. Pallantla, M.F. Schatz, R.O. Grigoriev, Physical Review E 100 (2019).","chicago":"Suri, Balachandra, Ravi Kumar Pallantla, Michael F. Schatz, and Roman O. Grigoriev. “Heteroclinic and Homoclinic Connections in a Kolmogorov-like Flow.” <i>Physical Review E</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/physreve.100.013112\">https://doi.org/10.1103/physreve.100.013112</a>.","apa":"Suri, B., Pallantla, R. K., Schatz, M. F., &#38; Grigoriev, R. O. (2019). Heteroclinic and homoclinic connections in a Kolmogorov-like flow. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physreve.100.013112\">https://doi.org/10.1103/physreve.100.013112</a>","ieee":"B. Suri, R. K. Pallantla, M. F. Schatz, and R. O. Grigoriev, “Heteroclinic and homoclinic connections in a Kolmogorov-like flow,” <i>Physical Review E</i>, vol. 100, no. 1. American Physical Society, 2019.","ama":"Suri B, Pallantla RK, Schatz MF, Grigoriev RO. Heteroclinic and homoclinic connections in a Kolmogorov-like flow. <i>Physical Review E</i>. 2019;100(1). doi:<a href=\"https://doi.org/10.1103/physreve.100.013112\">10.1103/physreve.100.013112</a>","ista":"Suri B, Pallantla RK, Schatz MF, Grigoriev RO. 2019. Heteroclinic and homoclinic connections in a Kolmogorov-like flow. Physical Review E. 100(1), 013112.","mla":"Suri, Balachandra, et al. “Heteroclinic and Homoclinic Connections in a Kolmogorov-like Flow.” <i>Physical Review E</i>, vol. 100, no. 1, 013112, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/physreve.100.013112\">10.1103/physreve.100.013112</a>."},"department":[{"_id":"BjHo"}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1907.05860"}],"language":[{"iso":"eng"}],"oa_version":"Preprint","ec_funded":1,"date_updated":"2025-04-15T06:50:28Z","_id":"6779","quality_controlled":"1","article_number":"013112","date_created":"2019-08-09T09:40:41Z","intvolume":"       100","doi":"10.1103/physreve.100.013112","title":"Heteroclinic and homoclinic connections in a Kolmogorov-like flow","isi":1,"author":[{"first_name":"Balachandra","last_name":"Suri","id":"47A5E706-F248-11E8-B48F-1D18A9856A87","full_name":"Suri, Balachandra"},{"full_name":"Pallantla, Ravi Kumar","last_name":"Pallantla","first_name":"Ravi Kumar"},{"full_name":"Schatz, Michael F.","first_name":"Michael F.","last_name":"Schatz"},{"full_name":"Grigoriev, Roman O.","last_name":"Grigoriev","first_name":"Roman O."}],"date_published":"2019-07-25T00:00:00Z","publication_status":"published","publication":"Physical Review E","external_id":{"isi":["000477911800012"],"arxiv":["1907.05860"]},"article_processing_charge":"No","arxiv":1,"oa":1,"month":"07","volume":100,"day":"25","scopus_import":"1","abstract":[{"lang":"eng","text":"Recent studies suggest that unstable recurrent solutions of the Navier-Stokes equation provide new insights\r\ninto dynamics of turbulent flows. In this study, we compute an extensive network of dynamical connections\r\nbetween such solutions in a weakly turbulent quasi-two-dimensional Kolmogorov flow that lies in the inversion symmetric subspace. In particular, we find numerous isolated heteroclinic connections between different\r\ntypes of solutions—equilibria, periodic, and quasiperiodic orbits—as well as continua of connections forming\r\nhigher-dimensional connecting manifolds. We also compute a homoclinic connection of a periodic orbit and\r\nprovide strong evidence that the associated homoclinic tangle forms the chaotic repeller that underpins transient\r\nturbulence in the symmetric subspace."}],"publication_identifier":{"issn":["2470-0045"],"eissn":["2470-0053"]},"publisher":"American Physical Society","ddc":["532"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"1","year":"2019","project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"fulldoi":"https://doi.org/10.1103/physreve.100.013112","type":"journal_article","article_type":"original"},{"doi":"10.1371/journal.pcbi.1007168","isi":1,"file_date_updated":"2020-07-14T12:47:40Z","title":"Molecular noise of innate immunity shapes bacteria-phage ecologies","author":[{"full_name":"Ruess, Jakob","first_name":"Jakob","orcid":"0000-0003-1615-3282","last_name":"Ruess","id":"4A245D00-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Pleska, Maros","orcid":"0000-0001-7460-7479","last_name":"Pleska","id":"4569785E-F248-11E8-B48F-1D18A9856A87","first_name":"Maros"},{"full_name":"Guet, Calin C","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","last_name":"Guet","orcid":"0000-0001-6220-2052","first_name":"Calin C"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik","orcid":"0000-0002-6699-1455","first_name":"Gašper","full_name":"Tkačik, Gašper"}],"publication_status":"published","date_published":"2019-07-02T00:00:00Z","file":[{"file_name":"2019_PlosComputBiology_Ruess.pdf","access_level":"open_access","file_id":"6803","file_size":2200003,"content_type":"application/pdf","relation":"main_file","date_updated":"2020-07-14T12:47:40Z","checksum":"7ded4721b41c2a0fc66a1c634540416a","creator":"dernst","date_created":"2019-08-12T12:27:26Z"}],"date_created":"2019-08-11T21:59:19Z","intvolume":"        15","_id":"6784","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_updated":"2025-04-14T13:46:26Z","article_number":"e1007168","quality_controlled":"1","citation":{"apa":"Ruess, J., Pleska, M., Guet, C. C., &#38; Tkačik, G. (2019). Molecular noise of innate immunity shapes bacteria-phage ecologies. <i>PLoS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1007168\">https://doi.org/10.1371/journal.pcbi.1007168</a>","chicago":"Ruess, Jakob, Maros Pleska, Calin C Guet, and Gašper Tkačik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” <i>PLoS Computational Biology</i>. Public Library of Science, 2019. <a href=\"https://doi.org/10.1371/journal.pcbi.1007168\">https://doi.org/10.1371/journal.pcbi.1007168</a>.","short":"J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, PLoS Computational Biology 15 (2019).","mla":"Ruess, Jakob, et al. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” <i>PLoS Computational Biology</i>, vol. 15, no. 7, e1007168, Public Library of Science, 2019, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1007168\">10.1371/journal.pcbi.1007168</a>.","ista":"Ruess J, Pleska M, Guet CC, Tkačik G. 2019. Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. 15(7), e1007168.","ama":"Ruess J, Pleska M, Guet CC, Tkačik G. Molecular noise of innate immunity shapes bacteria-phage ecologies. <i>PLoS Computational Biology</i>. 2019;15(7). doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1007168\">10.1371/journal.pcbi.1007168</a>","ieee":"J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Molecular noise of innate immunity shapes bacteria-phage ecologies,” <i>PLoS Computational Biology</i>, vol. 15, no. 7. Public Library of Science, 2019."},"department":[{"_id":"CaGu"},{"_id":"GaTk"}],"status":"public","oa_version":"Published Version","language":[{"iso":"eng"}],"type":"journal_article","article_type":"original","issue":"7","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","year":"2019","fulldoi":"https://doi.org/10.1371/journal.pcbi.1007168","project":[{"grant_number":"24210","name":"Effects of Stochasticity on the Function of Restriction-Modi cation Systems at the Single-Cell Level","_id":"251D65D8-B435-11E9-9278-68D0E5697425"},{"grant_number":"RGY0079/2011","name":"Multi-Level Conflicts in Evolutionary Dynamics of Restriction-Modification Systems","_id":"251BCBEC-B435-11E9-9278-68D0E5697425"}],"abstract":[{"text":"Mathematical models have been used successfully at diverse scales of biological organization, ranging from ecology and population dynamics to stochastic reaction events occurring between individual molecules in single cells. Generally, many biological processes unfold across multiple scales, with mutations being the best studied example of how stochasticity at the molecular scale can influence outcomes at the population scale. In many other contexts, however, an analogous link between micro- and macro-scale remains elusive, primarily due to the challenges involved in setting up and analyzing multi-scale models. Here, we employ such a model to investigate how stochasticity propagates from individual biochemical reaction events in the bacterial innate immune system to the ecology of bacteria and bacterial viruses. We show analytically how the dynamics of bacterial populations are shaped by the activities of immunity-conferring enzymes in single cells and how the ecological consequences imply optimal bacterial defense strategies against viruses. Our results suggest that bacterial populations in the presence of viruses can either optimize their initial growth rate or their population size, with the first strategy favoring simple immunity featuring a single restriction modification system and the second strategy favoring complex bacterial innate immunity featuring several simultaneously active restriction modification systems.","lang":"eng"}],"scopus_import":"1","publication_identifier":{"eissn":["1553-7358"]},"volume":15,"day":"02","has_accepted_license":"1","ddc":["570"],"publisher":"Public Library of Science","article_processing_charge":"No","oa":1,"external_id":{"isi":["000481577700032"]},"publication":"PLoS Computational Biology","month":"07","related_material":{"record":[{"relation":"research_data","status":"public","id":"9786"}]}},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"2","year":"2019","fulldoi":"https://doi.org/10.1103/PhysRevX.9.021026","project":[{"_id":"26031614-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Quantum rotations in the presence of a many-body environment","grant_number":"P29902"}],"type":"journal_article","article_type":"original","publication":"Physical Review X","external_id":{"isi":["000467402900001"],"arxiv":["1807.11238"]},"article_processing_charge":"No","arxiv":1,"oa":1,"month":"05","volume":9,"day":"08","abstract":[{"lang":"eng","text":"Dipolar coupling plays a fundamental role in the interaction between electrically or magnetically polarized species such as magnetic atoms and dipolar molecules in a gas or dipolar excitons in the solid state. Unlike Coulomb or contactlike interactions found in many atomic, molecular, and condensed-matter systems, this interaction is long-ranged and highly anisotropic, as it changes from repulsive to attractive depending on the relative positions and orientation of the dipoles. Because of this unique property, many exotic, symmetry-breaking collective states have been recently predicted for cold dipolar gases, but only a few have been experimentally detected and only in dilute atomic dipolar Bose-Einstein condensates. Here, we report on the first observation of attractive dipolar coupling between excitonic dipoles using a new design of stacked semiconductor bilayers. We show that the presence of a dipolar exciton fluid in one bilayer modifies the spatial distribution and increases the binding energy of excitonic dipoles in a vertically remote layer. The binding energy changes are explained using a many-body polaron model describing the deformation of the exciton cloud due to its interaction with a remote dipolar exciton. The surprising nonmonotonic dependence on the cloud density indicates the important role of dipolar correlations, which is unique to dense, strongly interacting dipolar solid-state systems. Our concept provides a route for the realization of dipolar lattices with strong anisotropic interactions in semiconductor systems, which open the way for the observation of theoretically predicted new and exotic collective phases, as well as for engineering and sensing their collective excitations."}],"scopus_import":"1","publication_identifier":{"eissn":["2160-3308"]},"publisher":"American Physical Society","ddc":["530"],"has_accepted_license":"1","doi":"10.1103/PhysRevX.9.021026","title":"Attractive dipolar coupling between stacked exciton fluids","file_date_updated":"2020-07-14T12:47:40Z","isi":1,"publication_status":"published","date_published":"2019-05-08T00:00:00Z","file":[{"content_type":"application/pdf","file_size":1193550,"checksum":"065ff82ee4a1d2c3773ce4b76ff4213c","date_updated":"2020-07-14T12:47:40Z","relation":"main_file","date_created":"2019-08-12T12:14:18Z","creator":"dernst","file_name":"2019_PhysReviewX_Hubert.pdf","access_level":"open_access","file_id":"6802"}],"author":[{"full_name":"Hubert, Colin","last_name":"Hubert","first_name":"Colin"},{"last_name":"Baruchi","first_name":"Yifat","full_name":"Baruchi, Yifat"},{"first_name":"Yotam","last_name":"Mazuz-Harpaz","full_name":"Mazuz-Harpaz, Yotam"},{"last_name":"Cohen","first_name":"Kobi","full_name":"Cohen, Kobi"},{"full_name":"Biermann, Klaus","first_name":"Klaus","last_name":"Biermann"},{"full_name":"Lemeshko, Mikhail","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","last_name":"Lemeshko"},{"first_name":"Ken","last_name":"West","full_name":"West, Ken"},{"first_name":"Loren","last_name":"Pfeiffer","full_name":"Pfeiffer, Loren"},{"last_name":"Rapaport","first_name":"Ronen","full_name":"Rapaport, Ronen"},{"first_name":"Paulo","last_name":"Santos","full_name":"Santos, Paulo"}],"status":"public","citation":{"ama":"Hubert C, Baruchi Y, Mazuz-Harpaz Y, et al. Attractive dipolar coupling between stacked exciton fluids. <i>Physical Review X</i>. 2019;9(2). doi:<a href=\"https://doi.org/10.1103/PhysRevX.9.021026\">10.1103/PhysRevX.9.021026</a>","ista":"Hubert C, Baruchi Y, Mazuz-Harpaz Y, Cohen K, Biermann K, Lemeshko M, West K, Pfeiffer L, Rapaport R, Santos P. 2019. Attractive dipolar coupling between stacked exciton fluids. Physical Review X. 9(2), 021026.","mla":"Hubert, Colin, et al. “Attractive Dipolar Coupling between Stacked Exciton Fluids.” <i>Physical Review X</i>, vol. 9, no. 2, 021026, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/PhysRevX.9.021026\">10.1103/PhysRevX.9.021026</a>.","ieee":"C. Hubert <i>et al.</i>, “Attractive dipolar coupling between stacked exciton fluids,” <i>Physical Review X</i>, vol. 9, no. 2. American Physical Society, 2019.","apa":"Hubert, C., Baruchi, Y., Mazuz-Harpaz, Y., Cohen, K., Biermann, K., Lemeshko, M., … Santos, P. (2019). Attractive dipolar coupling between stacked exciton fluids. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevX.9.021026\">https://doi.org/10.1103/PhysRevX.9.021026</a>","chicago":"Hubert, Colin, Yifat Baruchi, Yotam Mazuz-Harpaz, Kobi Cohen, Klaus Biermann, Mikhail Lemeshko, Ken West, Loren Pfeiffer, Ronen Rapaport, and Paulo Santos. “Attractive Dipolar Coupling between Stacked Exciton Fluids.” <i>Physical Review X</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/PhysRevX.9.021026\">https://doi.org/10.1103/PhysRevX.9.021026</a>.","short":"C. Hubert, Y. Baruchi, Y. Mazuz-Harpaz, K. Cohen, K. Biermann, M. Lemeshko, K. West, L. Pfeiffer, R. Rapaport, P. Santos, Physical Review X 9 (2019)."},"department":[{"_id":"MiLe"}],"language":[{"iso":"eng"}],"oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"_id":"6786","date_updated":"2025-04-15T07:59:29Z","quality_controlled":"1","article_number":"021026","date_created":"2019-08-11T21:59:20Z","intvolume":"         9"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1903.04929"}],"department":[{"_id":"HeEd"}],"citation":{"chicago":"Akopyan, Arseniy, and Ivan Izmestiev. “The Regge Symmetry, Confocal Conics, and the Schläfli Formula.” <i>Bulletin of the London Mathematical Society</i>. London Mathematical Society, 2019. <a href=\"https://doi.org/10.1112/blms.12276\">https://doi.org/10.1112/blms.12276</a>.","apa":"Akopyan, A., &#38; Izmestiev, I. (2019). The Regge symmetry, confocal conics, and the Schläfli formula. <i>Bulletin of the London Mathematical Society</i>. London Mathematical Society. <a href=\"https://doi.org/10.1112/blms.12276\">https://doi.org/10.1112/blms.12276</a>","short":"A. Akopyan, I. Izmestiev, Bulletin of the London Mathematical Society 51 (2019) 765–775.","ama":"Akopyan A, Izmestiev I. The Regge symmetry, confocal conics, and the Schläfli formula. <i>Bulletin of the London Mathematical Society</i>. 2019;51(5):765-775. doi:<a href=\"https://doi.org/10.1112/blms.12276\">10.1112/blms.12276</a>","ista":"Akopyan A, Izmestiev I. 2019. The Regge symmetry, confocal conics, and the Schläfli formula. Bulletin of the London Mathematical Society. 51(5), 765–775.","mla":"Akopyan, Arseniy, and Ivan Izmestiev. “The Regge Symmetry, Confocal Conics, and the Schläfli Formula.” <i>Bulletin of the London Mathematical Society</i>, vol. 51, no. 5, London Mathematical Society, 2019, pp. 765–75, doi:<a href=\"https://doi.org/10.1112/blms.12276\">10.1112/blms.12276</a>.","ieee":"A. Akopyan and I. Izmestiev, “The Regge symmetry, confocal conics, and the Schläfli formula,” <i>Bulletin of the London Mathematical Society</i>, vol. 51, no. 5. London Mathematical Society, pp. 765–775, 2019."},"status":"public","ec_funded":1,"oa_version":"Preprint","language":[{"iso":"eng"}],"intvolume":"        51","date_created":"2019-08-11T21:59:23Z","quality_controlled":"1","_id":"6793","date_updated":"2025-07-10T11:53:52Z","title":"The Regge symmetry, confocal conics, and the Schläfli formula","isi":1,"doi":"10.1112/blms.12276","date_published":"2019-10-01T00:00:00Z","author":[{"full_name":"Akopyan, Arseniy","first_name":"Arseniy","last_name":"Akopyan","orcid":"0000-0002-2548-617X","id":"430D2C90-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Izmestiev, Ivan","first_name":"Ivan","last_name":"Izmestiev"}],"publication_status":"published","page":"765-775","oa":1,"article_processing_charge":"No","arxiv":1,"publication":"Bulletin of the London Mathematical Society","external_id":{"arxiv":["1903.04929"],"isi":["000478560200001"]},"month":"10","publication_identifier":{"eissn":["1469-2120"],"issn":["0024-6093"]},"scopus_import":"1","abstract":[{"lang":"eng","text":"The Regge symmetry is a set of remarkable relations between two tetrahedra whose edge lengths are related in a simple fashion. It was first discovered as a consequence of an asymptotic formula in mathematical physics. Here, we give a simple geometric proof of Regge symmetries in Euclidean, spherical, and hyperbolic geometry."}],"day":"01","volume":51,"publisher":"London Mathematical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"5","project":[{"grant_number":"788183","name":"Alpha Shape Theory Extended","call_identifier":"H2020","_id":"266A2E9E-B435-11E9-9278-68D0E5697425"}],"fulldoi":"https://doi.org/10.1112/blms.12276","year":"2019","type":"journal_article","article_type":"original"},{"language":[{"iso":"eng"}],"oa_version":"Published Version","ec_funded":1,"status":"public","citation":{"short":"B. Trubenova, R. Hager, Ecology and Evolution 9 (2019) 9597–9608.","chicago":"Trubenova, Barbora, and Reinmar Hager. “Green Beards in the Light of Indirect Genetic Effects.” <i>Ecology and Evolution</i>. Wiley, 2019. <a href=\"https://doi.org/10.1002/ece3.5484\">https://doi.org/10.1002/ece3.5484</a>.","apa":"Trubenova, B., &#38; Hager, R. (2019). Green beards in the light of indirect genetic effects. <i>Ecology and Evolution</i>. Wiley. <a href=\"https://doi.org/10.1002/ece3.5484\">https://doi.org/10.1002/ece3.5484</a>","ieee":"B. Trubenova and R. Hager, “Green beards in the light of indirect genetic effects,” <i>Ecology and Evolution</i>, vol. 9, no. 17. Wiley, pp. 9597–9608, 2019.","ama":"Trubenova B, Hager R. Green beards in the light of indirect genetic effects. <i>Ecology and Evolution</i>. 2019;9(17):9597-9608. doi:<a href=\"https://doi.org/10.1002/ece3.5484\">10.1002/ece3.5484</a>","ista":"Trubenova B, Hager R. 2019. Green beards in the light of indirect genetic effects. Ecology and Evolution. 9(17), 9597–9608.","mla":"Trubenova, Barbora, and Reinmar Hager. “Green Beards in the Light of Indirect Genetic Effects.” <i>Ecology and Evolution</i>, vol. 9, no. 17, Wiley, 2019, pp. 9597–608, doi:<a href=\"https://doi.org/10.1002/ece3.5484\">10.1002/ece3.5484</a>."},"department":[{"_id":"NiBa"}],"_id":"6795","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_updated":"2026-04-03T09:50:31Z","quality_controlled":"1","date_created":"2019-08-11T21:59:24Z","intvolume":"         9","page":"9597-9608","publication_status":"published","file":[{"file_id":"6799","access_level":"open_access","file_name":"2019_EcologyEvolution_Trubenova.pdf","date_created":"2019-08-12T07:30:30Z","creator":"dernst","date_updated":"2020-07-14T12:47:40Z","checksum":"adcb70af4901977d95b8747eeee01bd7","relation":"main_file","file_size":2839636,"content_type":"application/pdf"}],"author":[{"full_name":"Trubenova, Barbora","first_name":"Barbora","orcid":"0000-0002-6873-2967","last_name":"Trubenova","id":"42302D54-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Hager, Reinmar","last_name":"Hager","first_name":"Reinmar"}],"date_published":"2019-09-01T00:00:00Z","doi":"10.1002/ece3.5484","isi":1,"file_date_updated":"2020-07-14T12:47:40Z","title":"Green beards in the light of indirect genetic effects","month":"09","publication":"Ecology and Evolution","external_id":{"isi":["000479973400001"]},"article_processing_charge":"No","oa":1,"publisher":"Wiley","ddc":["576"],"has_accepted_license":"1","volume":9,"day":"01","scopus_import":"1","abstract":[{"lang":"eng","text":"The green‐beard effect is one proposed mechanism predicted to underpin the evolu‐tion of altruistic behavior. It relies on the recognition and the selective help of altruists to each other in order to promote and sustain altruistic behavior. However, this mechanism has often been dismissed as unlikely or uncommon, as it is assumed that both the signaling trait and altruistic trait need to be encoded by the same gene or through tightly linked genes. Here, we use models of indirect genetic effects (IGEs) to find the minimum correlation between the signaling and altruistic trait required for the evolution of the latter. We show that this correlation threshold depends on the strength of the interaction (influence of the green beard on the expression of the altruistic trait), as well as the costs and benefits of the altruistic behavior. We further show that this correlation does not necessarily have to be high and support our analytical results by simulations."}],"publication_identifier":{"eissn":["2045-7758"]},"year":"2019","fulldoi":"https://doi.org/10.1002/ece3.5484","project":[{"grant_number":"704172","name":"Rate of Adaptation in Changing Environment","call_identifier":"H2020","_id":"25AEDD42-B435-11E9-9278-68D0E5697425"}],"issue":"17","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","article_type":"original","type":"journal_article"},{"fulldoi":"https://doi.org/10.1016/j.dyepig.2019.107768","year":"2019","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_type":"original","type":"journal_article","month":"12","article_processing_charge":"No","external_id":{"isi":["000484870700099"]},"publication":"Dyes and Pigments","publisher":"Elsevier","publication_identifier":{"issn":["0143-7208"]},"scopus_import":"1","abstract":[{"lang":"eng","text":"Indigoidine is a blue natural pigment, which can be efficiently synthetized in E. coli. In addition to its antioxidant and antimicrobial activities indigoidine due to its stability and deep blue color can find an application as an industrial, environmentally friendly dye. Moreover, similarly to its counterpart regular indigo dye, due to its molecular structure, indigoidine is an organic semiconductor. Fully conjugated aromatic moiety and intermolecular hydrogen bonding of indigoidine result in an unusually narrow bandgap for such a small molecule. This, in its turn, result is tight molecular packing in the solid state and opens a path for a wide range of application in organic and bio-electronics, such as electrochemical and field effect transistors, organic solar cells, light and bio-sensors etc."}],"day":"01","volume":171,"date_published":"2019-12-01T00:00:00Z","publication_status":"published","author":[{"first_name":"Cigdem","last_name":"Yumusak","full_name":"Yumusak, Cigdem"},{"full_name":"Prochazkova, Anna Jancik","last_name":"Prochazkova","first_name":"Anna Jancik"},{"full_name":"Apaydin, Dogukan H","first_name":"Dogukan H","id":"2FF891BC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1075-8857","last_name":"Apaydin"},{"first_name":"Hathaichanok","last_name":"Seelajaroen","full_name":"Seelajaroen, Hathaichanok"},{"full_name":"Sariciftci, Niyazi Serdar","last_name":"Sariciftci","first_name":"Niyazi Serdar"},{"last_name":"Weiter","first_name":"Martin","full_name":"Weiter, Martin"},{"full_name":"Krajcovic, Jozef","last_name":"Krajcovic","first_name":"Jozef"},{"last_name":"Qin","first_name":"Yong","full_name":"Qin, Yong"},{"last_name":"Zhang","first_name":"Wei","full_name":"Zhang, Wei"},{"full_name":"Zhan, Jixun","first_name":"Jixun","last_name":"Zhan"},{"first_name":"Alexander","last_name":"Kovalenko","full_name":"Kovalenko, Alexander"}],"title":"Indigoidine - Biosynthesized organic semiconductor","isi":1,"doi":"10.1016/j.dyepig.2019.107768","oa_version":"None","language":[{"iso":"eng"}],"department":[{"_id":"MaIb"}],"citation":{"short":"C. Yumusak, A.J. Prochazkova, D.H. Apaydin, H. Seelajaroen, N.S. Sariciftci, M. Weiter, J. Krajcovic, Y. Qin, W. Zhang, J. Zhan, A. Kovalenko, Dyes and Pigments 171 (2019).","chicago":"Yumusak, Cigdem, Anna Jancik Prochazkova, Dogukan H Apaydin, Hathaichanok Seelajaroen, Niyazi Serdar Sariciftci, Martin Weiter, Jozef Krajcovic, et al. “Indigoidine - Biosynthesized Organic Semiconductor.” <i>Dyes and Pigments</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.dyepig.2019.107768\">https://doi.org/10.1016/j.dyepig.2019.107768</a>.","apa":"Yumusak, C., Prochazkova, A. J., Apaydin, D. H., Seelajaroen, H., Sariciftci, N. S., Weiter, M., … Kovalenko, A. (2019). Indigoidine - Biosynthesized organic semiconductor. <i>Dyes and Pigments</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.dyepig.2019.107768\">https://doi.org/10.1016/j.dyepig.2019.107768</a>","ieee":"C. Yumusak <i>et al.</i>, “Indigoidine - Biosynthesized organic semiconductor,” <i>Dyes and Pigments</i>, vol. 171. Elsevier, 2019.","mla":"Yumusak, Cigdem, et al. “Indigoidine - Biosynthesized Organic Semiconductor.” <i>Dyes and Pigments</i>, vol. 171, 107768, Elsevier, 2019, doi:<a href=\"https://doi.org/10.1016/j.dyepig.2019.107768\">10.1016/j.dyepig.2019.107768</a>.","ama":"Yumusak C, Prochazkova AJ, Apaydin DH, et al. Indigoidine - Biosynthesized organic semiconductor. <i>Dyes and Pigments</i>. 2019;171. doi:<a href=\"https://doi.org/10.1016/j.dyepig.2019.107768\">10.1016/j.dyepig.2019.107768</a>","ista":"Yumusak C, Prochazkova AJ, Apaydin DH, Seelajaroen H, Sariciftci NS, Weiter M, Krajcovic J, Qin Y, Zhang W, Zhan J, Kovalenko A. 2019. Indigoidine - Biosynthesized organic semiconductor. Dyes and Pigments. 171, 107768."},"status":"public","intvolume":"       171","date_created":"2019-08-18T22:00:39Z","article_number":"107768","quality_controlled":"1","_id":"6818","date_updated":"2023-08-29T07:11:09Z"},{"fulldoi":"https://doi.org/10.1186/s13104-019-4534-3","year":"2019","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","type":"journal_article","related_material":{"record":[{"id":"9784","relation":"research_data","status":"public"}]},"month":"08","external_id":{"pmid":["31395095"]},"publication":"BMC Research Notes","oa":1,"article_processing_charge":"No","publisher":"BioMed Central","has_accepted_license":"1","ddc":["570"],"day":"08","volume":12,"publication_identifier":{"eissn":["1756-0500"]},"scopus_import":1,"abstract":[{"lang":"eng","text":"Glyphosate (N-phosphonomethyl glycine) and its commercial herbicide formulations have been shown to exert toxicity via various mechanisms. It has been asserted that glyphosate substitutes for glycine in polypeptide chains leading to protein misfolding and toxicity. However, as no direct evidence exists for glycine to glyphosate substitution in proteins, including in mammalian organisms, we tested this claim by conducting a proteomics analysis of MDA-MB-231 human breast cancer cells grown in the presence of 100 mg/L glyphosate for 6 days. Protein extracts from three treated and three untreated cell cultures were analysed as one TMT-6plex labelled sample, to highlight a specific pattern (+/+/+/−/−/−) of reporter intensities for peptides bearing true glyphosate treatment induced-post translational modifications as well as allowing an investigation of the total proteome."}],"file":[{"file_id":"6829","access_level":"open_access","file_name":"2019_BMC_Antoniou.pdf","date_created":"2019-08-23T11:10:35Z","creator":"dernst","checksum":"4a2bb7994b7f2c432bf44f5127ea3102","date_updated":"2020-07-14T12:47:40Z","relation":"main_file","file_size":1177482,"content_type":"application/pdf"}],"author":[{"full_name":"Antoniou, Michael N.","last_name":"Antoniou","first_name":"Michael N."},{"first_name":"Armel","id":"2A103192-F248-11E8-B48F-1D18A9856A87","last_name":"Nicolas","full_name":"Nicolas, Armel"},{"first_name":"Robin","last_name":"Mesnage","full_name":"Mesnage, Robin"},{"last_name":"Biserni","first_name":"Martina","full_name":"Biserni, Martina"},{"first_name":"Francesco V.","last_name":"Rao","full_name":"Rao, Francesco V."},{"last_name":"Martin","first_name":"Cristina Vazquez","full_name":"Martin, Cristina Vazquez"}],"pmid":1,"publication_status":"published","date_published":"2019-08-08T00:00:00Z","title":"Glyphosate does not substitute for glycine in proteins of actively dividing mammalian cells","file_date_updated":"2020-07-14T12:47:40Z","doi":"10.1186/s13104-019-4534-3","language":[{"iso":"eng"}],"oa_version":"Published Version","status":"public","department":[{"_id":"LifeSc"}],"citation":{"mla":"Antoniou, Michael N., et al. “Glyphosate Does Not Substitute for Glycine in Proteins of Actively Dividing Mammalian Cells.” <i>BMC Research Notes</i>, vol. 12, 494, BioMed Central, 2019, doi:<a href=\"https://doi.org/10.1186/s13104-019-4534-3\">10.1186/s13104-019-4534-3</a>.","ama":"Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. Glyphosate does not substitute for glycine in proteins of actively dividing mammalian cells. <i>BMC Research Notes</i>. 2019;12. doi:<a href=\"https://doi.org/10.1186/s13104-019-4534-3\">10.1186/s13104-019-4534-3</a>","ista":"Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. 2019. Glyphosate does not substitute for glycine in proteins of actively dividing mammalian cells. BMC Research Notes. 12, 494.","ieee":"M. N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F. V. Rao, and C. V. Martin, “Glyphosate does not substitute for glycine in proteins of actively dividing mammalian cells,” <i>BMC Research Notes</i>, vol. 12. BioMed Central, 2019.","chicago":"Antoniou, Michael N., Armel Nicolas, Robin Mesnage, Martina Biserni, Francesco V. Rao, and Cristina Vazquez Martin. “Glyphosate Does Not Substitute for Glycine in Proteins of Actively Dividing Mammalian Cells.” <i>BMC Research Notes</i>. BioMed Central, 2019. <a href=\"https://doi.org/10.1186/s13104-019-4534-3\">https://doi.org/10.1186/s13104-019-4534-3</a>.","apa":"Antoniou, M. N., Nicolas, A., Mesnage, R., Biserni, M., Rao, F. V., &#38; Martin, C. V. (2019). Glyphosate does not substitute for glycine in proteins of actively dividing mammalian cells. <i>BMC Research Notes</i>. BioMed Central. <a href=\"https://doi.org/10.1186/s13104-019-4534-3\">https://doi.org/10.1186/s13104-019-4534-3</a>","short":"M.N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F.V. Rao, C.V. Martin, BMC Research Notes 12 (2019)."},"quality_controlled":"1","article_number":"494","date_updated":"2023-02-23T14:08:14Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"_id":"6819","intvolume":"        12","date_created":"2019-08-18T22:00:39Z"},{"issue":"6","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","year":"2019","fulldoi":"https://doi.org/10.1111/1755-0998.13062","type":"journal_article","article_type":"original","article_processing_charge":"No","oa":1,"external_id":{"isi":["000480196800001"],"pmid":["31325910"]},"publication":"Molecular Ecology Resources","month":"11","scopus_import":"1","abstract":[{"text":"To determine the visual sensitivities of an organism of interest, quantitative reverse transcription–polymerase chain reaction (qRT–PCR) is often used to quantify expression of the light‐sensitive opsins in the retina. While qRT–PCR is an affordable, high‐throughput method for measuring expression, it comes with inherent normalization issues that affect the interpretation of results, especially as opsin expression can vary greatly based on developmental stage, light environment or diurnal cycles. We tested for diurnal cycles of opsin expression over a period of 24 hr at 1‐hr increments and examined how normalization affects a data set with fluctuating expression levels using qRT–PCR and transcriptome data from the retinae of the cichlid Pelmatolapia mariae. We compared five methods of normalizing opsin expression relative to (a) the average of three stably expressed housekeeping genes (Ube2z, EF1‐α and β‐actin), (b) total RNA concentration, (c) GNAT2, (the cone‐specific subunit of transducin), (d) total opsin expression and (e) only opsins expressed in the same cone type. Normalizing by proportion of cone type produced the least variation and would be best for removing time‐of‐day variation. In contrast, normalizing by housekeeping genes produced the highest daily variation in expression and demonstrated that the peak of cone opsin expression was in the late afternoon. A weighted correlation network analysis showed that the expression of different cone opsins follows a very similar daily cycle. With the knowledge of how these normalization methods affect opsin expression data, we make recommendations for designing sampling approaches and quantification methods based upon the scientific question being examined.","lang":"eng"}],"publication_identifier":{"eissn":["1755-0998"]},"volume":19,"day":"01","publisher":"Wiley","doi":"10.1111/1755-0998.13062","isi":1,"title":"Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses","page":"1447-1460","publication_status":"published","pmid":1,"date_published":"2019-11-01T00:00:00Z","author":[{"full_name":"Yourick, Miranda R.","first_name":"Miranda R.","last_name":"Yourick"},{"full_name":"Sandkam, Benjamin A.","last_name":"Sandkam","first_name":"Benjamin A."},{"full_name":"Gammerdinger, William J","first_name":"William J","orcid":"0000-0001-9638-1220","last_name":"Gammerdinger","id":"3A7E01BC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Daniel","last_name":"Escobar-Camacho","full_name":"Escobar-Camacho, Daniel"},{"last_name":"Nandamuri","first_name":"Sri Pratima","full_name":"Nandamuri, Sri Pratima"},{"last_name":"Clark","first_name":"Frances E.","full_name":"Clark, Frances E."},{"full_name":"Joyce, Brendan","first_name":"Brendan","last_name":"Joyce"},{"first_name":"Matthew A.","last_name":"Conte","full_name":"Conte, Matthew A."},{"full_name":"Kocher, Thomas D.","first_name":"Thomas D.","last_name":"Kocher"},{"full_name":"Carleton, Karen L.","last_name":"Carleton","first_name":"Karen L."}],"citation":{"ieee":"M. R. Yourick <i>et al.</i>, “Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses,” <i>Molecular Ecology Resources</i>, vol. 19, no. 6. Wiley, pp. 1447–1460, 2019.","mla":"Yourick, Miranda R., et al. “Diurnal Variation in Opsin Expression and Common Housekeeping Genes Necessitates Comprehensive Normalization Methods for Quantitative Real-Time PCR Analyses.” <i>Molecular Ecology Resources</i>, vol. 19, no. 6, Wiley, 2019, pp. 1447–60, doi:<a href=\"https://doi.org/10.1111/1755-0998.13062\">10.1111/1755-0998.13062</a>.","ama":"Yourick MR, Sandkam BA, Gammerdinger WJ, et al. Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses. <i>Molecular Ecology Resources</i>. 2019;19(6):1447-1460. doi:<a href=\"https://doi.org/10.1111/1755-0998.13062\">10.1111/1755-0998.13062</a>","ista":"Yourick MR, Sandkam BA, Gammerdinger WJ, Escobar-Camacho D, Nandamuri SP, Clark FE, Joyce B, Conte MA, Kocher TD, Carleton KL. 2019. Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses. Molecular Ecology Resources. 19(6), 1447–1460.","short":"M.R. Yourick, B.A. Sandkam, W.J. Gammerdinger, D. Escobar-Camacho, S.P. Nandamuri, F.E. Clark, B. Joyce, M.A. Conte, T.D. Kocher, K.L. Carleton, Molecular Ecology Resources 19 (2019) 1447–1460.","chicago":"Yourick, Miranda R., Benjamin A. Sandkam, William J Gammerdinger, Daniel Escobar-Camacho, Sri Pratima Nandamuri, Frances E. Clark, Brendan Joyce, Matthew A. Conte, Thomas D. Kocher, and Karen L. Carleton. “Diurnal Variation in Opsin Expression and Common Housekeeping Genes Necessitates Comprehensive Normalization Methods for Quantitative Real-Time PCR Analyses.” <i>Molecular Ecology Resources</i>. Wiley, 2019. <a href=\"https://doi.org/10.1111/1755-0998.13062\">https://doi.org/10.1111/1755-0998.13062</a>.","apa":"Yourick, M. R., Sandkam, B. A., Gammerdinger, W. J., Escobar-Camacho, D., Nandamuri, S. P., Clark, F. E., … Carleton, K. L. (2019). Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses. <i>Molecular Ecology Resources</i>. Wiley. <a href=\"https://doi.org/10.1111/1755-0998.13062\">https://doi.org/10.1111/1755-0998.13062</a>"},"main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6995727","open_access":"1"}],"department":[{"_id":"BeVi"}],"status":"public","oa_version":"Submitted Version","language":[{"iso":"eng"}],"date_created":"2019-08-18T22:00:41Z","intvolume":"        19","date_updated":"2023-08-29T07:10:44Z","_id":"6821","quality_controlled":"1"},{"external_id":{"isi":["000499090600011"],"pmid":["31409920"]},"publication":"Nature Reviews Immunology","article_processing_charge":"No","month":"12","volume":19,"day":"01","abstract":[{"lang":"eng","text":"Platelets are small anucleate cellular fragments that are released by megakaryocytes and safeguard vascular integrity through a process termed ‘haemostasis’. However, platelets have important roles beyond haemostasis as they contribute to the initiation and coordination of intravascular immune responses. They continuously monitor blood vessel integrity and tightly coordinate vascular trafficking and functions of multiple cell types. In this way platelets act as ‘patrolling officers of the vascular highway’ that help to establish effective immune responses to infections and cancer. Here we discuss the distinct biological features of platelets that allow them to shape immune responses to pathogens and tumour cells, highlighting the parallels between these responses."}],"scopus_import":"1","publication_identifier":{"eissn":["1474-1741"],"issn":["1474-1733"]},"publisher":"Springer Nature","issue":"12","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","year":"2019","fulldoi":"https://doi.org/10.1038/s41577-019-0202-z","project":[{"grant_number":"747687","_id":"260AA4E2-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells"}],"type":"journal_article","article_type":"original","status":"public","citation":{"chicago":"Gärtner, Florian R, and Steffen Massberg. “Patrolling the Vascular Borders: Platelets in Immunity to Infection and Cancer.” <i>Nature Reviews Immunology</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41577-019-0202-z\">https://doi.org/10.1038/s41577-019-0202-z</a>.","apa":"Gärtner, F. R., &#38; Massberg, S. (2019). Patrolling the vascular borders: Platelets in immunity to infection and cancer. <i>Nature Reviews Immunology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41577-019-0202-z\">https://doi.org/10.1038/s41577-019-0202-z</a>","short":"F.R. Gärtner, S. Massberg, Nature Reviews Immunology 19 (2019) 747–760.","mla":"Gärtner, Florian R., and Steffen Massberg. “Patrolling the Vascular Borders: Platelets in Immunity to Infection and Cancer.” <i>Nature Reviews Immunology</i>, vol. 19, no. 12, Springer Nature, 2019, pp. 747–760, doi:<a href=\"https://doi.org/10.1038/s41577-019-0202-z\">10.1038/s41577-019-0202-z</a>.","ama":"Gärtner FR, Massberg S. Patrolling the vascular borders: Platelets in immunity to infection and cancer. <i>Nature Reviews Immunology</i>. 2019;19(12):747–760. doi:<a href=\"https://doi.org/10.1038/s41577-019-0202-z\">10.1038/s41577-019-0202-z</a>","ista":"Gärtner FR, Massberg S. 2019. Patrolling the vascular borders: Platelets in immunity to infection and cancer. Nature Reviews Immunology. 19(12), 747–760.","ieee":"F. R. Gärtner and S. Massberg, “Patrolling the vascular borders: Platelets in immunity to infection and cancer,” <i>Nature Reviews Immunology</i>, vol. 19, no. 12. Springer Nature, pp. 747–760, 2019."},"department":[{"_id":"MiSi"}],"language":[{"iso":"eng"}],"oa_version":"None","ec_funded":1,"date_updated":"2025-04-14T07:43:17Z","_id":"6824","quality_controlled":"1","date_created":"2019-08-20T17:24:32Z","intvolume":"        19","doi":"10.1038/s41577-019-0202-z","title":"Patrolling the vascular borders: Platelets in immunity to infection and cancer","isi":1,"page":"747–760","author":[{"full_name":"Gärtner, Florian R","id":"397A88EE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6120-3723","last_name":"Gärtner","first_name":"Florian R"},{"first_name":"Steffen","last_name":"Massberg","full_name":"Massberg, Steffen"}],"date_published":"2019-12-01T00:00:00Z","pmid":1,"publication_status":"published"},{"author":[{"full_name":"Brown, Adam","first_name":"Adam","last_name":"Brown","id":"70B7FDF6-608D-11E9-9333-8535E6697425"}],"date_published":"2019-11-15T00:00:00Z","publication_status":"published","page":"261-289","title":"Arakawa-Suzuki functors for Whittaker modules","isi":1,"doi":"10.1016/j.jalgebra.2019.07.027","quality_controlled":"1","_id":"6828","date_updated":"2023-08-29T07:11:47Z","intvolume":"       538","date_created":"2019-08-22T07:54:13Z","language":[{"iso":"eng"}],"oa_version":"Preprint","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1805.04676"}],"department":[{"_id":"HeEd"}],"citation":{"mla":"Brown, Adam. “Arakawa-Suzuki Functors for Whittaker Modules.” <i>Journal of Algebra</i>, vol. 538, Elsevier, 2019, pp. 261–89, doi:<a href=\"https://doi.org/10.1016/j.jalgebra.2019.07.027\">10.1016/j.jalgebra.2019.07.027</a>.","ama":"Brown A. Arakawa-Suzuki functors for Whittaker modules. <i>Journal of Algebra</i>. 2019;538:261-289. doi:<a href=\"https://doi.org/10.1016/j.jalgebra.2019.07.027\">10.1016/j.jalgebra.2019.07.027</a>","ista":"Brown A. 2019. Arakawa-Suzuki functors for Whittaker modules. Journal of Algebra. 538, 261–289.","ieee":"A. Brown, “Arakawa-Suzuki functors for Whittaker modules,” <i>Journal of Algebra</i>, vol. 538. Elsevier, pp. 261–289, 2019.","apa":"Brown, A. (2019). Arakawa-Suzuki functors for Whittaker modules. <i>Journal of Algebra</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jalgebra.2019.07.027\">https://doi.org/10.1016/j.jalgebra.2019.07.027</a>","chicago":"Brown, Adam. “Arakawa-Suzuki Functors for Whittaker Modules.” <i>Journal of Algebra</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.jalgebra.2019.07.027\">https://doi.org/10.1016/j.jalgebra.2019.07.027</a>.","short":"A. Brown, Journal of Algebra 538 (2019) 261–289."},"article_type":"original","type":"journal_article","fulldoi":"https://doi.org/10.1016/j.jalgebra.2019.07.027","year":"2019","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"Elsevier","day":"15","volume":538,"publication_identifier":{"issn":["0021-8693"]},"abstract":[{"text":"In this paper we construct a family of exact functors from the category of Whittaker modules of the simple complex Lie algebra of type  to the category of finite-dimensional modules of the graded affine Hecke algebra of type . Using results of Backelin [2] and of Arakawa-Suzuki [1], we prove that these functors map standard modules to standard modules (or zero) and simple modules to simple modules (or zero). Moreover, we show that each simple module of the graded affine Hecke algebra appears as the image of a simple Whittaker module. Since the Whittaker category contains the BGG category  as a full subcategory, our results generalize results of Arakawa-Suzuki [1], which in turn generalize Schur-Weyl duality between finite-dimensional representations of  and representations of the symmetric group .","lang":"eng"}],"month":"11","external_id":{"arxiv":["1805.04676"],"isi":["000487176300011"]},"publication":"Journal of Algebra","oa":1,"article_processing_charge":"No","arxiv":1},{"abstract":[{"lang":"eng","text":"* Understanding the mechanisms causing phenotypic differences between females and males has long fascinated evolutionary biologists. An extensive literature exists on animal sexual dimorphism but less information is known about sex differences in plants, particularly the extent of geographical variation in sexual dimorphism and its life‐cycle dynamics.\r\n* Here, we investigated patterns of genetically based sexual dimorphism in vegetative and reproductive traits of a wind‐pollinated dioecious plant, Rumex hastatulus, across three life‐cycle stages using open‐pollinated families from 30 populations spanning the geographic range and chromosomal variation (XY and XY1Y2) of the species.\r\n* The direction and degree of sexual dimorphism was highly variable among populations and life‐cycle stages. Sex‐specific differences in reproductive function explained a significant amount of temporal change in sexual dimorphism. For several traits, geographical variation in sexual dimorphism was associated with bioclimatic parameters, likely due to the differential responses of the sexes to climate. We found no systematic differences in sexual dimorphism between chromosome races.\r\n* Sex‐specific trait differences in dioecious plants largely result from a balance between sexual and natural selection on resource allocation. Our results indicate that abiotic factors associated with geographical context also play a role in modifying sexual dimorphism during the plant life‐cycle."}],"scopus_import":"1","publication_identifier":{"eissn":["1469-8137"]},"volume":224,"day":"01","has_accepted_license":"1","ddc":["570"],"corr_author":"1","publisher":"Wiley","article_processing_charge":"Yes (via OA deal)","oa":1,"external_id":{"isi":["000481376500001"]},"publication":"New Phytologist","month":"11","related_material":{"record":[{"id":"9803","relation":"research_data","status":"public"},{"relation":"dissertation_contains","status":"public","id":"14058"}]},"type":"journal_article","article_type":"original","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"3","year":"2019","project":[{"grant_number":"665385","name":"International IST Doctoral Program","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"fulldoi":"https://doi.org/10.1111/nph.16050","date_created":"2019-08-25T22:00:51Z","intvolume":"       224","_id":"6831","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_updated":"2026-04-07T13:25:33Z","quality_controlled":"1","citation":{"short":"G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, New Phytologist 224 (2019) 1108–1120.","apa":"Puixeu Sala, G., Pickup, M., Field, D., &#38; Barrett, S. C. H. (2019). Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.16050\">https://doi.org/10.1111/nph.16050</a>","chicago":"Puixeu Sala, Gemma, Melinda Pickup, David Field, and Spencer C.H. Barrett. “Variation in Sexual Dimorphism in a Wind-Pollinated Plant: The Influence of Geographical Context and Life-Cycle Dynamics.” <i>New Phytologist</i>. Wiley, 2019. <a href=\"https://doi.org/10.1111/nph.16050\">https://doi.org/10.1111/nph.16050</a>.","ieee":"G. Puixeu Sala, M. Pickup, D. Field, and S. C. H. Barrett, “Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics,” <i>New Phytologist</i>, vol. 224, no. 3. Wiley, pp. 1108–1120, 2019.","mla":"Puixeu Sala, Gemma, et al. “Variation in Sexual Dimorphism in a Wind-Pollinated Plant: The Influence of Geographical Context and Life-Cycle Dynamics.” <i>New Phytologist</i>, vol. 224, no. 3, Wiley, 2019, pp. 1108–20, doi:<a href=\"https://doi.org/10.1111/nph.16050\">10.1111/nph.16050</a>.","ista":"Puixeu Sala G, Pickup M, Field D, Barrett SCH. 2019. Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics. New Phytologist. 224(3), 1108–1120.","ama":"Puixeu Sala G, Pickup M, Field D, Barrett SCH. Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics. <i>New Phytologist</i>. 2019;224(3):1108-1120. doi:<a href=\"https://doi.org/10.1111/nph.16050\">10.1111/nph.16050</a>"},"department":[{"_id":"NiBa"},{"_id":"BeVi"}],"status":"public","oa_version":"Published Version","ec_funded":1,"language":[{"iso":"eng"}],"doi":"10.1111/nph.16050","isi":1,"file_date_updated":"2020-07-14T12:47:42Z","title":"Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics","page":"1108-1120","author":[{"full_name":"Puixeu Sala, Gemma","id":"33AB266C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8330-1754","last_name":"Puixeu Sala","first_name":"Gemma"},{"full_name":"Pickup, Melinda","first_name":"Melinda","id":"2C78037E-F248-11E8-B48F-1D18A9856A87","last_name":"Pickup","orcid":"0000-0001-6118-0541"},{"full_name":"Field, David","first_name":"David","orcid":"0000-0002-4014-8478","last_name":"Field"},{"full_name":"Barrett, Spencer C.H.","last_name":"Barrett","first_name":"Spencer C.H."}],"publication_status":"published","file":[{"file_name":"2019_NewPhytologist_Puixeu.pdf","file_id":"6833","access_level":"open_access","file_size":2314016,"content_type":"application/pdf","date_created":"2019-08-27T12:44:54Z","creator":"apreinsp","checksum":"6370e7567d96b7b562e77d8b89653f80","date_updated":"2020-07-14T12:47:42Z","relation":"main_file"}],"date_published":"2019-11-01T00:00:00Z"},{"volume":365,"day":"16","abstract":[{"lang":"eng","text":"Steady-state turnover is a hallmark of epithelial tissues throughout adult life. Intestinal epithelial turnover is marked by continuous cell migration, which is assumed to be driven by mitotic pressure from the crypts. However, the balance of forces in renewal remains ill-defined. Combining biophysical modeling and quantitative three-dimensional tissue imaging with genetic and physical manipulations, we revealed the existence of an actin-related protein 2/3 complex–dependent active migratory force, which explains quantitatively the profiles of cell speed, density, and tissue tension along the villi. Cells migrate collectively with minimal rearrangements while displaying dual—apicobasal and front-back—polarity characterized by actin-rich basal protrusions oriented in the direction of migration. We propose that active migration is a critical component of gut epithelial turnover."}],"scopus_import":"1","publisher":"American Association for the Advancement of Science","publication":"Science","external_id":{"isi":["000481688700050"],"pmid":["31416964"]},"article_processing_charge":"No","month":"08","type":"journal_article","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"6454","year":"2019","fulldoi":"https://doi.org/10.1126/science.aau3429","_id":"6832","date_updated":"2023-08-29T07:16:40Z","quality_controlled":"1","date_created":"2019-08-25T22:00:51Z","intvolume":"       365","status":"public","citation":{"mla":"Krndija, Denis, et al. “Active Cell Migration Is Critical for Steady-State Epithelial Turnover in the Gut.” <i>Science</i>, vol. 365, no. 6454, American Association for the Advancement of Science, 2019, pp. 705–10, doi:<a href=\"https://doi.org/10.1126/science.aau3429\">10.1126/science.aau3429</a>.","ista":"Krndija D, Marjou FE, Guirao B, Richon S, Leroy O, Bellaiche Y, Hannezo EB, Vignjevic DM. 2019. Active cell migration is critical for steady-state epithelial turnover in the gut. Science. 365(6454), 705–710.","ama":"Krndija D, Marjou FE, Guirao B, et al. Active cell migration is critical for steady-state epithelial turnover in the gut. <i>Science</i>. 2019;365(6454):705-710. doi:<a href=\"https://doi.org/10.1126/science.aau3429\">10.1126/science.aau3429</a>","ieee":"D. Krndija <i>et al.</i>, “Active cell migration is critical for steady-state epithelial turnover in the gut,” <i>Science</i>, vol. 365, no. 6454. American Association for the Advancement of Science, pp. 705–710, 2019.","apa":"Krndija, D., Marjou, F. E., Guirao, B., Richon, S., Leroy, O., Bellaiche, Y., … Vignjevic, D. M. (2019). Active cell migration is critical for steady-state epithelial turnover in the gut. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.aau3429\">https://doi.org/10.1126/science.aau3429</a>","chicago":"Krndija, Denis, Fatima El Marjou, Boris Guirao, Sophie Richon, Olivier Leroy, Yohanns Bellaiche, Edouard B Hannezo, and Danijela Matic Vignjevic. “Active Cell Migration Is Critical for Steady-State Epithelial Turnover in the Gut.” <i>Science</i>. American Association for the Advancement of Science, 2019. <a href=\"https://doi.org/10.1126/science.aau3429\">https://doi.org/10.1126/science.aau3429</a>.","short":"D. Krndija, F.E. Marjou, B. Guirao, S. Richon, O. Leroy, Y. Bellaiche, E.B. Hannezo, D.M. Vignjevic, Science 365 (2019) 705–710."},"department":[{"_id":"EdHa"}],"language":[{"iso":"eng"}],"oa_version":"None","doi":"10.1126/science.aau3429","isi":1,"title":"Active cell migration is critical for steady-state epithelial turnover in the gut","page":"705-710","date_published":"2019-08-16T00:00:00Z","publication_status":"published","author":[{"first_name":"Denis","last_name":"Krndija","full_name":"Krndija, Denis"},{"last_name":"Marjou","first_name":"Fatima El","full_name":"Marjou, Fatima El"},{"last_name":"Guirao","first_name":"Boris","full_name":"Guirao, Boris"},{"first_name":"Sophie","last_name":"Richon","full_name":"Richon, Sophie"},{"full_name":"Leroy, Olivier","last_name":"Leroy","first_name":"Olivier"},{"full_name":"Bellaiche, Yohanns","last_name":"Bellaiche","first_name":"Yohanns"},{"first_name":"Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","last_name":"Hannezo","full_name":"Hannezo, Edouard B"},{"full_name":"Vignjevic, Danijela Matic","last_name":"Vignjevic","first_name":"Danijela Matic"}],"pmid":1},{"fulldoi":"https://doi.org/10.1038/s41586-019-1488-5","project":[{"name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"279307"},{"grant_number":"S 11407_N23","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering"},{"call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","grant_number":"291734"}],"year":"2019","issue":"7770","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"letter_note","type":"journal_article","related_material":{"link":[{"url":"https://ist.ac.at/en/news/too-much-inequality-impedes-support-for-public-goods-according-to-research-published-in-nature/","description":"News on IST Homepage","relation":"press_release"}]},"month":"08","oa":1,"article_processing_charge":"No","external_id":{"isi":["000482219600045"]},"publication":"Nature","has_accepted_license":"1","ddc":["000"],"publisher":"Springer Nature","publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"abstract":[{"lang":"eng","text":"Direct reciprocity is a powerful mechanism for the evolution of cooperation on the basis of repeated interactions1,2,3,4. It requires that interacting individuals are sufficiently equal, such that everyone faces similar consequences when they cooperate or defect. Yet inequality is ubiquitous among humans5,6 and is generally considered to undermine cooperation and welfare7,8,9,10. Most previous models of reciprocity do not include inequality11,12,13,14,15. These models assume that individuals are the same in all relevant aspects. Here we introduce a general framework to study direct reciprocity among unequal individuals. Our model allows for multiple sources of inequality. Subjects can differ in their endowments, their productivities and in how much they benefit from public goods. We find that extreme inequality prevents cooperation. But if subjects differ in productivity, some endowment inequality can be necessary for cooperation to prevail. Our mathematical predictions are supported by a behavioural experiment in which we vary the endowments and productivities of the subjects. We observe that overall welfare is maximized when the two sources of heterogeneity are aligned, such that more productive individuals receive higher endowments. By contrast, when endowments and productivities are misaligned, cooperation quickly breaks down. Our findings have implications for policy-makers concerned with equity, efficiency and the provisioning of public goods."}],"scopus_import":"1","day":"22","volume":572,"file":[{"file_size":18577756,"content_type":"application/pdf","checksum":"a6e0e3168bf62de624e7772cdfaeb26f","date_updated":"2020-07-14T12:47:42Z","relation":"main_file","date_created":"2020-05-14T10:00:32Z","creator":"dernst","file_name":"2019_Nature_Hauser.pdf","access_level":"open_access","file_id":"7828"}],"publication_status":"published","date_published":"2019-08-22T00:00:00Z","author":[{"full_name":"Hauser, Oliver P.","last_name":"Hauser","first_name":"Oliver P."},{"last_name":"Hilbe","orcid":"0000-0001-5116-955X","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","first_name":"Christian","full_name":"Hilbe, Christian"},{"full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu"},{"full_name":"Nowak, Martin A.","last_name":"Nowak","first_name":"Martin A."}],"page":"524-527","isi":1,"title":"Social dilemmas among unequals","file_date_updated":"2020-07-14T12:47:42Z","doi":"10.1038/s41586-019-1488-5","ec_funded":1,"oa_version":"Submitted Version","language":[{"iso":"eng"}],"department":[{"_id":"KrCh"}],"citation":{"ieee":"O. P. Hauser, C. Hilbe, K. Chatterjee, and M. A. Nowak, “Social dilemmas among unequals,” <i>Nature</i>, vol. 572, no. 7770. Springer Nature, pp. 524–527, 2019.","ama":"Hauser OP, Hilbe C, Chatterjee K, Nowak MA. Social dilemmas among unequals. <i>Nature</i>. 2019;572(7770):524-527. doi:<a href=\"https://doi.org/10.1038/s41586-019-1488-5\">10.1038/s41586-019-1488-5</a>","ista":"Hauser OP, Hilbe C, Chatterjee K, Nowak MA. 2019. Social dilemmas among unequals. Nature. 572(7770), 524–527.","mla":"Hauser, Oliver P., et al. “Social Dilemmas among Unequals.” <i>Nature</i>, vol. 572, no. 7770, Springer Nature, 2019, pp. 524–27, doi:<a href=\"https://doi.org/10.1038/s41586-019-1488-5\">10.1038/s41586-019-1488-5</a>.","short":"O.P. Hauser, C. Hilbe, K. Chatterjee, M.A. Nowak, Nature 572 (2019) 524–527.","chicago":"Hauser, Oliver P., Christian Hilbe, Krishnendu Chatterjee, and Martin A. Nowak. “Social Dilemmas among Unequals.” <i>Nature</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41586-019-1488-5\">https://doi.org/10.1038/s41586-019-1488-5</a>.","apa":"Hauser, O. P., Hilbe, C., Chatterjee, K., &#38; Nowak, M. A. (2019). Social dilemmas among unequals. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-019-1488-5\">https://doi.org/10.1038/s41586-019-1488-5</a>"},"status":"public","intvolume":"       572","date_created":"2019-09-01T22:00:56Z","quality_controlled":"1","_id":"6836","date_updated":"2025-07-10T11:53:55Z"},{"oa_version":"None","language":[{"iso":"eng"}],"citation":{"ama":"Tavano S, Heisenberg C-PJ. Migrasomes take center stage. <i>Nature Cell Biology</i>. 2019;21(8):918-920. doi:<a href=\"https://doi.org/10.1038/s41556-019-0369-3\">10.1038/s41556-019-0369-3</a>","ista":"Tavano S, Heisenberg C-PJ. 2019. Migrasomes take center stage. Nature Cell Biology. 21(8), 918–920.","mla":"Tavano, Ste, and Carl-Philipp J. Heisenberg. “Migrasomes Take Center Stage.” <i>Nature Cell Biology</i>, vol. 21, no. 8, Springer Nature, 2019, pp. 918–20, doi:<a href=\"https://doi.org/10.1038/s41556-019-0369-3\">10.1038/s41556-019-0369-3</a>.","ieee":"S. Tavano and C.-P. J. Heisenberg, “Migrasomes take center stage,” <i>Nature Cell Biology</i>, vol. 21, no. 8. Springer Nature, pp. 918–920, 2019.","chicago":"Tavano, Ste, and Carl-Philipp J Heisenberg. “Migrasomes Take Center Stage.” <i>Nature Cell Biology</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41556-019-0369-3\">https://doi.org/10.1038/s41556-019-0369-3</a>.","apa":"Tavano, S., &#38; Heisenberg, C.-P. J. (2019). Migrasomes take center stage. <i>Nature Cell Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41556-019-0369-3\">https://doi.org/10.1038/s41556-019-0369-3</a>","short":"S. Tavano, C.-P.J. Heisenberg, Nature Cell Biology 21 (2019) 918–920."},"department":[{"_id":"CaHe"}],"status":"public","date_created":"2019-09-01T22:00:57Z","intvolume":"        21","_id":"6837","date_updated":"2023-08-29T07:42:20Z","quality_controlled":"1","page":"918-920","publication_status":"published","date_published":"2019-08-01T00:00:00Z","pmid":1,"author":[{"first_name":"Ste","orcid":"0000-0001-9970-7804","last_name":"Tavano","id":"2F162F0C-F248-11E8-B48F-1D18A9856A87","full_name":"Tavano, Ste"},{"first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566","last_name":"Heisenberg","id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J"}],"doi":"10.1038/s41556-019-0369-3","isi":1,"title":"Migrasomes take center stage","month":"08","article_processing_charge":"No","publication":"Nature Cell Biology","external_id":{"pmid":["31371826"],"isi":["000478029000003"]},"publisher":"Springer Nature","abstract":[{"lang":"eng","text":"Migrasomes are a recently discovered type of extracellular vesicles that are characteristically generated along retraction fibers in migrating cells. Two studies now show how migrasomes are formed and how they function in the physiologically relevant context of the developing zebrafish embryo."}],"scopus_import":"1","publication_identifier":{"eissn":["1476-4679"]},"volume":21,"day":"01","year":"2019","fulldoi":"https://doi.org/10.1038/s41556-019-0369-3","issue":"8","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","type":"journal_article"},{"type":"journal_article","year":"2019","fulldoi":"https://doi.org/10.1088/1742-5468/ab190d","project":[{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program","grant_number":"665385"}],"issue":"6","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"IOP Publishing","abstract":[{"text":"We discuss thermodynamic properties of harmonically trapped\r\nimperfect quantum gases. The spatial inhomogeneity of these systems imposes\r\na redefinition of the mean-field interparticle potential energy as compared\r\nto the homogeneous case. In our approach, it takes the form a\r\n2N2 ωd, where\r\nN is the number of particles, ω—the harmonic trap frequency, d—system’s\r\ndimensionality, and a is a parameter characterizing the interparticle interaction.\r\nWe provide arguments that this model corresponds to the limiting case of\r\na long-ranged interparticle potential of vanishingly small amplitude. This\r\nconclusion is drawn from a computation similar to the well-known Kac scaling\r\nprocedure, which is presented here in a form adapted to the case of an isotropic\r\nharmonic trap. We show that within the model, the imperfect gas of trapped\r\nrepulsive bosons undergoes the Bose–Einstein condensation provided d > 1.\r\nThe main result of our analysis is that in d = 1 the gas of attractive imperfect\r\nfermions with a = −aF < 0 is thermodynamically equivalent to the gas of\r\nrepulsive bosons with a = aB > 0 provided the parameters aF and aB fulfill\r\nthe relation aB + aF = \u001f. This result supplements similar recent conclusion\r\nabout thermodynamic equivalence of two-dimensional (2D) uniform imperfect\r\nrepulsive Bose and attractive Fermi gases.","lang":"eng"}],"scopus_import":"1","publication_identifier":{"eissn":["1742-5468"]},"volume":2019,"day":"13","month":"06","arxiv":1,"article_processing_charge":"No","oa":1,"publication":"Journal of Statistical Mechanics: Theory and Experiment","external_id":{"arxiv":["1810.02209"],"isi":["000471650100001"]},"publication_status":"published","author":[{"full_name":"Mysliwy, Krzysztof","first_name":"Krzysztof","last_name":"Mysliwy","id":"316457FC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Napiórkowski, Marek","last_name":"Napiórkowski","first_name":"Marek"}],"date_published":"2019-06-13T00:00:00Z","doi":"10.1088/1742-5468/ab190d","isi":1,"title":"Thermodynamics of inhomogeneous imperfect quantum gases in harmonic traps","date_created":"2019-09-01T22:00:59Z","intvolume":"      2019","date_updated":"2025-03-31T16:01:18Z","_id":"6840","quality_controlled":"1","article_number":"063101","oa_version":"Preprint","ec_funded":1,"language":[{"iso":"eng"}],"citation":{"ieee":"K. Mysliwy and M. Napiórkowski, “Thermodynamics of inhomogeneous imperfect quantum gases in harmonic traps,” <i>Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2019, no. 6. IOP Publishing, 2019.","mla":"Mysliwy, Krzysztof, and Marek Napiórkowski. “Thermodynamics of Inhomogeneous Imperfect Quantum Gases in Harmonic Traps.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2019, no. 6, 063101, IOP Publishing, 2019, doi:<a href=\"https://doi.org/10.1088/1742-5468/ab190d\">10.1088/1742-5468/ab190d</a>.","ama":"Mysliwy K, Napiórkowski M. Thermodynamics of inhomogeneous imperfect quantum gases in harmonic traps. <i>Journal of Statistical Mechanics: Theory and Experiment</i>. 2019;2019(6). doi:<a href=\"https://doi.org/10.1088/1742-5468/ab190d\">10.1088/1742-5468/ab190d</a>","ista":"Mysliwy K, Napiórkowski M. 2019. Thermodynamics of inhomogeneous imperfect quantum gases in harmonic traps. Journal of Statistical Mechanics: Theory and Experiment. 2019(6), 063101.","short":"K. Mysliwy, M. Napiórkowski, Journal of Statistical Mechanics: Theory and Experiment 2019 (2019).","apa":"Mysliwy, K., &#38; Napiórkowski, M. (2019). Thermodynamics of inhomogeneous imperfect quantum gases in harmonic traps. <i>Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1742-5468/ab190d\">https://doi.org/10.1088/1742-5468/ab190d</a>","chicago":"Mysliwy, Krzysztof, and Marek Napiórkowski. “Thermodynamics of Inhomogeneous Imperfect Quantum Gases in Harmonic Traps.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing, 2019. <a href=\"https://doi.org/10.1088/1742-5468/ab190d\">https://doi.org/10.1088/1742-5468/ab190d</a>."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1810.02209"}],"department":[{"_id":"RoSe"}],"status":"public"},{"title":"On isometric embeddings of Wasserstein spaces – the discrete case","isi":1,"doi":"10.1016/j.jmaa.2019.123435","author":[{"first_name":"György Pál","last_name":"Gehér","full_name":"Gehér, György Pál"},{"full_name":"Titkos, Tamás","first_name":"Tamás","last_name":"Titkos"},{"full_name":"Virosztek, Daniel","first_name":"Daniel","last_name":"Virosztek","orcid":"0000-0003-1109-5511","id":"48DB45DA-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2019-12-15T00:00:00Z","publication_status":"published","quality_controlled":"1","article_number":"123435","date_updated":"2025-07-10T11:53:55Z","_id":"6843","intvolume":"       480","date_created":"2019-09-01T22:01:01Z","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1809.01101"}],"department":[{"_id":"LaEr"}],"citation":{"short":"G.P. Gehér, T. Titkos, D. Virosztek, Journal of Mathematical Analysis and Applications 480 (2019).","apa":"Gehér, G. P., Titkos, T., &#38; Virosztek, D. (2019). On isometric embeddings of Wasserstein spaces – the discrete case. <i>Journal of Mathematical Analysis and Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jmaa.2019.123435\">https://doi.org/10.1016/j.jmaa.2019.123435</a>","chicago":"Gehér, György Pál, Tamás Titkos, and Daniel Virosztek. “On Isometric Embeddings of Wasserstein Spaces – the Discrete Case.” <i>Journal of Mathematical Analysis and Applications</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.jmaa.2019.123435\">https://doi.org/10.1016/j.jmaa.2019.123435</a>.","ieee":"G. P. Gehér, T. Titkos, and D. Virosztek, “On isometric embeddings of Wasserstein spaces – the discrete case,” <i>Journal of Mathematical Analysis and Applications</i>, vol. 480, no. 2. Elsevier, 2019.","ista":"Gehér GP, Titkos T, Virosztek D. 2019. On isometric embeddings of Wasserstein spaces – the discrete case. Journal of Mathematical Analysis and Applications. 480(2), 123435.","ama":"Gehér GP, Titkos T, Virosztek D. On isometric embeddings of Wasserstein spaces – the discrete case. <i>Journal of Mathematical Analysis and Applications</i>. 2019;480(2). doi:<a href=\"https://doi.org/10.1016/j.jmaa.2019.123435\">10.1016/j.jmaa.2019.123435</a>","mla":"Gehér, György Pál, et al. “On Isometric Embeddings of Wasserstein Spaces – the Discrete Case.” <i>Journal of Mathematical Analysis and Applications</i>, vol. 480, no. 2, 123435, Elsevier, 2019, doi:<a href=\"https://doi.org/10.1016/j.jmaa.2019.123435\">10.1016/j.jmaa.2019.123435</a>."},"language":[{"iso":"eng"}],"ec_funded":1,"oa_version":"Preprint","type":"journal_article","article_type":"original","issue":"2","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","fulldoi":"https://doi.org/10.1016/j.jmaa.2019.123435","project":[{"grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme"}],"year":"2019","day":"15","volume":480,"publication_identifier":{"eissn":["1096-0813"],"issn":["0022-247X"]},"scopus_import":"1","abstract":[{"text":"The aim of this short paper is to offer a complete characterization of all (not necessarily surjective) isometric embeddings of the Wasserstein space Wp(X), where S is a countable discrete metric space and 0<p<∞ is any parameter value. Roughly speaking, we will prove that any isometric embedding can be described by a special kind of X×(0,1]-indexed family of nonnegative finite measures. Our result implies that a typical non-surjective isometric embedding of Wp(X) splits mass and does not preserve the shape of measures. In order to stress that the lack of surjectivity is what makes things challenging, we will prove alternatively that Wp(X) is isometrically rigid for all 0<p<∞.","lang":"eng"}],"publisher":"Elsevier","external_id":{"arxiv":["1809.01101"],"isi":["000486563900031"]},"publication":"Journal of Mathematical Analysis and Applications","oa":1,"article_processing_charge":"No","arxiv":1,"month":"12"}]