[{"publication_status":"published","publication_identifier":{"eissn":["1088-6850"],"issn":["0002-9947"]},"keyword":["Wasserstein space","isometric embeddings","isometric rigidity","exotic isometry flow"],"intvolume":"       373","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"5855-5883","main_file_link":[{"url":"https://arxiv.org/abs/2002.00859","open_access":"1"}],"type":"journal_article","publication":"Transactions of the American Mathematical Society","date_created":"2020-01-29T10:20:46Z","abstract":[{"lang":"eng","text":"Recently Kloeckner described the structure of the isometry group of the quadratic Wasserstein space W_2(R^n). It turned out that the case of the real line is exceptional in the sense that there exists an exotic isometry flow. Following this line of investigation, we compute Isom(W_p(R)), the isometry group of the Wasserstein space\r\nW_p(R) for all p \\in [1,\\infty) \\setminus {2}. We show that W_2(R) is also exceptional regarding the\r\nparameter p: W_p(R) is isometrically rigid if and only if p is not equal to 2. Regarding the underlying\r\nspace, we prove that the exceptionality of p = 2 disappears if we replace R by the compact\r\ninterval [0,1]. Surprisingly, in that case, W_p([0,1]) is isometrically rigid if and only if\r\np is not equal to 1. Moreover, W_1([0,1]) admits isometries that split mass, and Isom(W_1([0,1]))\r\ncannot be embedded into Isom(W_1(R))."}],"quality_controlled":"1","citation":{"chicago":"Geher, Gyorgy Pal, Tamas Titkos, and Daniel Virosztek. “Isometric Study of Wasserstein Spaces - the Real Line.” <i>Transactions of the American Mathematical Society</i>. American Mathematical Society, 2020. <a href=\"https://doi.org/10.1090/tran/8113\">https://doi.org/10.1090/tran/8113</a>.","ieee":"G. P. Geher, T. Titkos, and D. Virosztek, “Isometric study of Wasserstein spaces - the real line,” <i>Transactions of the American Mathematical Society</i>, vol. 373, no. 8. American Mathematical Society, pp. 5855–5883, 2020.","ista":"Geher GP, Titkos T, Virosztek D. 2020. Isometric study of Wasserstein spaces - the real line. Transactions of the American Mathematical Society. 373(8), 5855–5883.","mla":"Geher, Gyorgy Pal, et al. “Isometric Study of Wasserstein Spaces - the Real Line.” <i>Transactions of the American Mathematical Society</i>, vol. 373, no. 8, American Mathematical Society, 2020, pp. 5855–83, doi:<a href=\"https://doi.org/10.1090/tran/8113\">10.1090/tran/8113</a>.","short":"G.P. Geher, T. Titkos, D. Virosztek, Transactions of the American Mathematical Society 373 (2020) 5855–5883.","apa":"Geher, G. P., Titkos, T., &#38; Virosztek, D. (2020). Isometric study of Wasserstein spaces - the real line. <i>Transactions of the American Mathematical Society</i>. American Mathematical Society. <a href=\"https://doi.org/10.1090/tran/8113\">https://doi.org/10.1090/tran/8113</a>","ama":"Geher GP, Titkos T, Virosztek D. Isometric study of Wasserstein spaces - the real line. <i>Transactions of the American Mathematical Society</i>. 2020;373(8):5855-5883. doi:<a href=\"https://doi.org/10.1090/tran/8113\">10.1090/tran/8113</a>"},"year":"2020","month":"08","oa_version":"Preprint","volume":373,"article_type":"original","title":"Isometric study of Wasserstein spaces - the real line","date_updated":"2025-07-10T11:54:32Z","ec_funded":1,"project":[{"name":"Geometric study of Wasserstein spaces and free probability","grant_number":"846294","_id":"26A455A6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"scopus_import":"1","doi":"10.1090/tran/8113","author":[{"first_name":"Gyorgy Pal","full_name":"Geher, Gyorgy Pal","last_name":"Geher"},{"last_name":"Titkos","full_name":"Titkos, Tamas","first_name":"Tamas"},{"id":"48DB45DA-F248-11E8-B48F-1D18A9856A87","full_name":"Virosztek, Daniel","last_name":"Virosztek","orcid":"0000-0003-1109-5511","first_name":"Daniel"}],"ddc":["515"],"day":"01","language":[{"iso":"eng"}],"department":[{"_id":"LaEr"}],"status":"public","external_id":{"arxiv":["2002.00859"],"isi":["000551418100018"]},"publisher":"American Mathematical Society","article_processing_charge":"No","oa":1,"issue":"8","arxiv":1,"date_published":"2020-08-01T00:00:00Z","_id":"7389"},{"month":"06","date_created":"2018-12-11T11:44:29Z","abstract":[{"text":"We study the Gromov waist in the sense of t-neighborhoods for measures in the Euclidean  space,  motivated  by  the  famous  theorem  of  Gromov  about  the  waist  of  radially symmetric Gaussian measures.  In particular, it turns our possible to extend Gromov’s original result  to  the  case  of  not  necessarily  radially  symmetric  Gaussian  measure.   We  also  provide examples of measures having no t-neighborhood waist property, including a rather wide class\r\nof compactly supported radially symmetric measures and their maps into the Euclidean space of dimension at least 2.\r\nWe  use  a  simpler  form  of  Gromov’s  pancake  argument  to  produce  some  estimates  of t-neighborhoods of (weighted) volume-critical submanifolds in the spirit of the waist theorems, including neighborhoods of algebraic manifolds in the complex projective space. In the appendix of this paper we provide for reader’s convenience a more detailed explanation of the Caffarelli theorem that we use to handle not necessarily radially symmetric Gaussian\r\nmeasures.","lang":"eng"}],"year":"2020","citation":{"chicago":"Akopyan, Arseniy, and Roman Karasev. “Gromov’s Waist of Non-Radial Gaussian Measures and Radial Non-Gaussian Measures.” In <i>Geometric Aspects of Functional Analysis</i>, edited by Bo’az Klartag and Emanuel Milman, 2256:1–27. LNM. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/978-3-030-36020-7_1\">https://doi.org/10.1007/978-3-030-36020-7_1</a>.","ieee":"A. Akopyan and R. Karasev, “Gromov’s waist of non-radial Gaussian measures and radial non-Gaussian measures,” in <i>Geometric Aspects of Functional Analysis</i>, vol. 2256, B. Klartag and E. Milman, Eds. Springer Nature, 2020, pp. 1–27.","ista":"Akopyan A, Karasev R. 2020.Gromov’s waist of non-radial Gaussian measures and radial non-Gaussian measures. In: Geometric Aspects of Functional Analysis. vol. 2256, 1–27.","ama":"Akopyan A, Karasev R. Gromov’s waist of non-radial Gaussian measures and radial non-Gaussian measures. In: Klartag B, Milman E, eds. <i>Geometric Aspects of Functional Analysis</i>. Vol 2256. LNM. Springer Nature; 2020:1-27. doi:<a href=\"https://doi.org/10.1007/978-3-030-36020-7_1\">10.1007/978-3-030-36020-7_1</a>","short":"A. Akopyan, R. Karasev, in:, B. Klartag, E. Milman (Eds.), Geometric Aspects of Functional Analysis, Springer Nature, 2020, pp. 1–27.","mla":"Akopyan, Arseniy, and Roman Karasev. “Gromov’s Waist of Non-Radial Gaussian Measures and Radial Non-Gaussian Measures.” <i>Geometric Aspects of Functional Analysis</i>, edited by Bo’az Klartag and Emanuel Milman, vol. 2256, Springer Nature, 2020, pp. 1–27, doi:<a href=\"https://doi.org/10.1007/978-3-030-36020-7_1\">10.1007/978-3-030-36020-7_1</a>.","apa":"Akopyan, A., &#38; Karasev, R. (2020). Gromov’s waist of non-radial Gaussian measures and radial non-Gaussian measures. In B. Klartag &#38; E. Milman (Eds.), <i>Geometric Aspects of Functional Analysis</i> (Vol. 2256, pp. 1–27). Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-36020-7_1\">https://doi.org/10.1007/978-3-030-36020-7_1</a>"},"quality_controlled":"1","page":"1-27","main_file_link":[{"url":"https://arxiv.org/abs/1808.07350","open_access":"1"}],"type":"book_chapter","publication":"Geometric Aspects of Functional Analysis","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"editor":[{"last_name":"Klartag","full_name":"Klartag, Bo'az","first_name":"Bo'az"},{"first_name":"Emanuel","last_name":"Milman","full_name":"Milman, Emanuel"}],"intvolume":"      2256","publication_status":"published","publication_identifier":{"issn":["0075-8434"],"eissn":["1617-9692"],"eisbn":["9783030360207"],"isbn":["9783030360191"]},"date_published":"2020-06-21T00:00:00Z","_id":"74","arxiv":1,"publisher":"Springer Nature","article_processing_charge":"No","series_title":"LNM","oa":1,"status":"public","external_id":{"arxiv":["1808.07350"],"isi":["000557689300003"]},"language":[{"iso":"eng"}],"department":[{"_id":"HeEd"},{"_id":"JaMa"}],"scopus_import":"1","doi":"10.1007/978-3-030-36020-7_1","author":[{"id":"430D2C90-F248-11E8-B48F-1D18A9856A87","full_name":"Akopyan, Arseniy","last_name":"Akopyan","orcid":"0000-0002-2548-617X","first_name":"Arseniy"},{"last_name":"Karasev","full_name":"Karasev, Roman","first_name":"Roman"}],"day":"21","date_updated":"2025-07-10T11:54:33Z","title":"Gromov's waist of non-radial Gaussian measures and radial non-Gaussian measures","project":[{"call_identifier":"H2020","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425","name":"Optimal Transport and Stochastic Dynamics"}],"ec_funded":1,"volume":2256,"oa_version":"Preprint"},{"publication":"Gastrulation: From Embryonic Pattern to Form","type":"book_chapter","page":"319-341","quality_controlled":"1","year":"2020","citation":{"chicago":"Bruce, Ashley E.E., and Carl-Philipp J Heisenberg. “Mechanisms of Zebrafish Epiboly: A Current View.” In <i>Gastrulation: From Embryonic Pattern to Form</i>, edited by Lilianna  Solnica-Krezel, 136:319–41. Current Topics in Developmental Biology. Elsevier, 2020. <a href=\"https://doi.org/10.1016/bs.ctdb.2019.07.001\">https://doi.org/10.1016/bs.ctdb.2019.07.001</a>.","ieee":"A. E. E. Bruce and C.-P. J. Heisenberg, “Mechanisms of zebrafish epiboly: A current view,” in <i>Gastrulation: From Embryonic Pattern to Form</i>, vol. 136, L. Solnica-Krezel, Ed. Elsevier, 2020, pp. 319–341.","ista":"Bruce AEE, Heisenberg C-PJ. 2020.Mechanisms of zebrafish epiboly: A current view. In: Gastrulation: From Embryonic Pattern to Form. vol. 136, 319–341.","ama":"Bruce AEE, Heisenberg C-PJ. Mechanisms of zebrafish epiboly: A current view. In: Solnica-Krezel L, ed. <i>Gastrulation: From Embryonic Pattern to Form</i>. Vol 136. Current Topics in Developmental Biology. Elsevier; 2020:319-341. doi:<a href=\"https://doi.org/10.1016/bs.ctdb.2019.07.001\">10.1016/bs.ctdb.2019.07.001</a>","mla":"Bruce, Ashley E. E., and Carl-Philipp J. Heisenberg. “Mechanisms of Zebrafish Epiboly: A Current View.” <i>Gastrulation: From Embryonic Pattern to Form</i>, edited by Lilianna  Solnica-Krezel, vol. 136, Elsevier, 2020, pp. 319–41, doi:<a href=\"https://doi.org/10.1016/bs.ctdb.2019.07.001\">10.1016/bs.ctdb.2019.07.001</a>.","apa":"Bruce, A. E. E., &#38; Heisenberg, C.-P. J. (2020). Mechanisms of zebrafish epiboly: A current view. In L. Solnica-Krezel (Ed.), <i>Gastrulation: From Embryonic Pattern to Form</i> (Vol. 136, pp. 319–341). Elsevier. <a href=\"https://doi.org/10.1016/bs.ctdb.2019.07.001\">https://doi.org/10.1016/bs.ctdb.2019.07.001</a>","short":"A.E.E. Bruce, C.-P.J. Heisenberg, in:, L. Solnica-Krezel (Ed.), Gastrulation: From Embryonic Pattern to Form, Elsevier, 2020, pp. 319–341."},"abstract":[{"text":"Epiboly is a conserved gastrulation movement describing the thinning and spreading of a sheet or multi-layer of cells. The zebrafish embryo has emerged as a vital model system to address the cellular and molecular mechanisms that drive epiboly. In the zebrafish embryo, the blastoderm, consisting of a simple squamous epithelium (the enveloping layer) and an underlying mass of deep cells, as well as a yolk nuclear syncytium (the yolk syncytial layer) undergo epiboly to internalize the yolk cell during gastrulation. The major events during zebrafish epiboly are: expansion of the enveloping layer and the internal yolk syncytial layer, reduction and removal of the yolk membrane ahead of the advancing blastoderm margin and deep cell rearrangements between the enveloping layer and yolk syncytial layer to thin the blastoderm. Here, work addressing the cellular and molecular mechanisms as well as the sources of the mechanical forces that underlie these events is reviewed. The contribution of recent findings to the current model of epiboly as well as open questions and future prospects are also discussed.","lang":"eng"}],"date_created":"2020-01-30T09:24:06Z","month":"01","publication_status":"published","publication_identifier":{"isbn":["9780128127988"],"issn":["0070-2153"]},"intvolume":"       136","editor":[{"first_name":"Lilianna ","full_name":"Solnica-Krezel, Lilianna ","last_name":"Solnica-Krezel"}],"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"status":"public","external_id":{"pmid":["31959293"],"isi":["000611830600012"]},"series_title":"Current Topics in Developmental Biology","article_processing_charge":"No","publisher":"Elsevier","_id":"7410","date_published":"2020-01-01T00:00:00Z","oa_version":"None","volume":136,"title":"Mechanisms of zebrafish epiboly: A current view","date_updated":"2025-06-12T07:03:19Z","day":"01","author":[{"last_name":"Bruce","full_name":"Bruce, Ashley E.E.","first_name":"Ashley E.E."},{"orcid":"0000-0002-0912-4566","first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","last_name":"Heisenberg","full_name":"Heisenberg, Carl-Philipp J"}],"scopus_import":"1","doi":"10.1016/bs.ctdb.2019.07.001","department":[{"_id":"CaHe"}],"language":[{"iso":"eng"}]},{"citation":{"chicago":"Sinclair, Scott A, and U. Krämer. “Generation of Effective Zinc-Deficient Agar-Solidified Media Allows Identification of Root Morphology Changes in Response to Zinc Limitation.” <i>Plant Signaling &#38; Behavior</i>. Taylor &#38; Francis, 2020. <a href=\"https://doi.org/10.1080/15592324.2019.1687175\">https://doi.org/10.1080/15592324.2019.1687175</a>.","ieee":"S. A. Sinclair and U. Krämer, “Generation of effective zinc-deficient agar-solidified media allows identification of root morphology changes in response to zinc limitation,” <i>Plant Signaling &#38; Behavior</i>, vol. 15, no. 1. Taylor &#38; Francis, 2020.","ista":"Sinclair SA, Krämer U. 2020. Generation of effective zinc-deficient agar-solidified media allows identification of root morphology changes in response to zinc limitation. Plant Signaling &#38; Behavior. 15(1), 1687175.","ama":"Sinclair SA, Krämer U. Generation of effective zinc-deficient agar-solidified media allows identification of root morphology changes in response to zinc limitation. <i>Plant Signaling &#38; Behavior</i>. 2020;15(1). doi:<a href=\"https://doi.org/10.1080/15592324.2019.1687175\">10.1080/15592324.2019.1687175</a>","apa":"Sinclair, S. A., &#38; Krämer, U. (2020). Generation of effective zinc-deficient agar-solidified media allows identification of root morphology changes in response to zinc limitation. <i>Plant Signaling &#38; Behavior</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/15592324.2019.1687175\">https://doi.org/10.1080/15592324.2019.1687175</a>","mla":"Sinclair, Scott A., and U. Krämer. “Generation of Effective Zinc-Deficient Agar-Solidified Media Allows Identification of Root Morphology Changes in Response to Zinc Limitation.” <i>Plant Signaling &#38; Behavior</i>, vol. 15, no. 1, 1687175, Taylor &#38; Francis, 2020, doi:<a href=\"https://doi.org/10.1080/15592324.2019.1687175\">10.1080/15592324.2019.1687175</a>.","short":"S.A. Sinclair, U. Krämer, Plant Signaling &#38; Behavior 15 (2020)."},"year":"2020","quality_controlled":"1","abstract":[{"text":"Earlier, we demonstrated that transcript levels of METAL TOLERANCE PROTEIN2 (MTP2) and of HEAVY METAL ATPase2 (HMA2) increase strongly in roots of Arabidopsis upon prolonged zinc (Zn) deficiency and respond to shoot physiological Zn status, and not to the local Zn status in roots. This provided evidence for shoot-to-root communication in the acclimation of plants to Zn deficiency. Zn-deficient soils limit both the yield and quality of agricultural crops and can result in clinically relevant nutritional Zn deficiency in human populations. Implementing Zn deficiency during cultivation of the model plant Arabidopsis thaliana on agar-solidified media is difficult because trace element contaminations are present in almost all commercially available agars. Here, we demonstrate root morphological acclimations to Zn deficiency on agar-solidified medium following the effective removal of contaminants. These advancements allow reproducible phenotyping toward understanding fundamental plant responses to deficiencies of Zn and other essential trace elements.","lang":"eng"}],"date_created":"2020-01-30T10:12:04Z","type":"journal_article","publication":"Plant Signaling & Behavior","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012054","open_access":"1"}],"month":"01","intvolume":"        15","publication_status":"published","publication_identifier":{"issn":["1559-2324"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"issue":"1","oa":1,"article_processing_charge":"No","publisher":"Taylor & Francis","pmid":1,"external_id":{"isi":["000494909300001"],"pmid":["31696764"]},"status":"public","_id":"7416","date_published":"2020-01-01T00:00:00Z","date_updated":"2023-10-17T09:01:48Z","title":"Generation of effective zinc-deficient agar-solidified media allows identification of root morphology changes in response to zinc limitation","article_type":"original","article_number":"1687175","volume":15,"oa_version":"Submitted Version","department":[{"_id":"JiFr"}],"language":[{"iso":"eng"}],"day":"01","author":[{"orcid":"0000-0002-4566-0593","first_name":"Scott A","last_name":"Sinclair","full_name":"Sinclair, Scott A","id":"2D99FE6A-F248-11E8-B48F-1D18A9856A87"},{"first_name":"U.","full_name":"Krämer, U.","last_name":"Krämer"}],"scopus_import":"1","doi":"10.1080/15592324.2019.1687175"},{"publication_identifier":{"issn":["1559-2324"]},"publication_status":"published","intvolume":"        15","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","isi":1,"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012154"}],"publication":"Plant Signaling & Behavior","type":"journal_article","date_created":"2020-01-30T10:14:14Z","abstract":[{"lang":"eng","text":"Previously, we reported that the allelic de-etiolated by zinc (dez) and trichome birefringence (tbr) mutants exhibit photomorphogenic development in the dark, which is enhanced by high Zn. TRICHOME BIREFRINGENCE-LIKE proteins had been implicated in transferring acetyl groups to various hemicelluloses. Pectin O-acetylation levels were lower in dark-grown dez seedlings than in the wild type. We observed Zn-enhanced photomorphogenesis in the dark also in the reduced wall acetylation 2 (rwa2-3) mutant, which exhibits lowered O-acetylation levels of cell wall macromolecules including pectins and xyloglucans, supporting a role for cell wall macromolecule O-acetylation in the photomorphogenic phenotypes of rwa2-3 and dez. Application of very short oligogalacturonides (vsOGs) restored skotomorphogenesis in dark-grown dez and rwa2-3. Here we demonstrate that in dez, O-acetylation of non-pectin cell wall components, notably of xyloglucan, is enhanced. Our results highlight the complexity of cell wall homeostasis and indicate against an influence of xyloglucan O-acetylation on light-dependent seedling development."}],"quality_controlled":"1","citation":{"ieee":"S. A. Sinclair, S. Gille, M. Pauly, and U. Krämer, “Regulation of acetylation of plant cell wall components is complex and responds to external stimuli,” <i>Plant Signaling &#38; Behavior</i>, vol. 15, no. 1. Informa UK Limited, 2020.","chicago":"Sinclair, Scott A, S. Gille, M. Pauly, and U. Krämer. “Regulation of Acetylation of Plant Cell Wall Components Is Complex and Responds to External Stimuli.” <i>Plant Signaling &#38; Behavior</i>. Informa UK Limited, 2020. <a href=\"https://doi.org/10.1080/15592324.2019.1687185\">https://doi.org/10.1080/15592324.2019.1687185</a>.","mla":"Sinclair, Scott A., et al. “Regulation of Acetylation of Plant Cell Wall Components Is Complex and Responds to External Stimuli.” <i>Plant Signaling &#38; Behavior</i>, vol. 15, no. 1, e1687185, Informa UK Limited, 2020, doi:<a href=\"https://doi.org/10.1080/15592324.2019.1687185\">10.1080/15592324.2019.1687185</a>.","apa":"Sinclair, S. A., Gille, S., Pauly, M., &#38; Krämer, U. (2020). Regulation of acetylation of plant cell wall components is complex and responds to external stimuli. <i>Plant Signaling &#38; Behavior</i>. Informa UK Limited. <a href=\"https://doi.org/10.1080/15592324.2019.1687185\">https://doi.org/10.1080/15592324.2019.1687185</a>","short":"S.A. Sinclair, S. Gille, M. Pauly, U. Krämer, Plant Signaling &#38; Behavior 15 (2020).","ama":"Sinclair SA, Gille S, Pauly M, Krämer U. Regulation of acetylation of plant cell wall components is complex and responds to external stimuli. <i>Plant Signaling &#38; Behavior</i>. 2020;15(1). doi:<a href=\"https://doi.org/10.1080/15592324.2019.1687185\">10.1080/15592324.2019.1687185</a>","ista":"Sinclair SA, Gille S, Pauly M, Krämer U. 2020. Regulation of acetylation of plant cell wall components is complex and responds to external stimuli. Plant Signaling &#38; Behavior. 15(1), e1687185."},"year":"2020","month":"01","oa_version":"Submitted Version","volume":15,"article_number":"e1687185","article_type":"original","title":"Regulation of acetylation of plant cell wall components is complex and responds to external stimuli","date_updated":"2023-09-06T15:23:04Z","scopus_import":"1","doi":"10.1080/15592324.2019.1687185","author":[{"last_name":"Sinclair","full_name":"Sinclair, Scott A","id":"2D99FE6A-F248-11E8-B48F-1D18A9856A87","first_name":"Scott A","orcid":"0000-0002-4566-0593"},{"last_name":"Gille","full_name":"Gille, S.","first_name":"S."},{"first_name":"M.","full_name":"Pauly, M.","last_name":"Pauly"},{"first_name":"U.","last_name":"Krämer","full_name":"Krämer, U."}],"day":"01","language":[{"iso":"eng"}],"department":[{"_id":"JiFr"}],"status":"public","external_id":{"pmid":["31696770"],"isi":["000494907500001"]},"pmid":1,"publisher":"Informa UK Limited","article_processing_charge":"No","oa":1,"issue":"1","date_published":"2020-01-01T00:00:00Z","_id":"7417"},{"date_updated":"2025-07-10T11:54:37Z","title":"Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological superconductors","article_type":"original","volume":101,"oa_version":"Preprint","article_number":"020504","department":[{"_id":"MiLe"}],"language":[{"iso":"eng"}],"author":[{"id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","full_name":"Ghazaryan, Areg","last_name":"Ghazaryan","orcid":"0000-0001-9666-3543","first_name":"Areg"},{"first_name":"P. L.S.","last_name":"Lopes","full_name":"Lopes, P. L.S."},{"full_name":"Hosur, Pavan","last_name":"Hosur","first_name":"Pavan"},{"full_name":"Gilbert, Matthew J.","last_name":"Gilbert","first_name":"Matthew J."},{"first_name":"Pouyan","full_name":"Ghaemi, Pouyan","last_name":"Ghaemi"}],"day":"13","scopus_import":"1","doi":"10.1103/PhysRevB.101.020504","article_processing_charge":"No","issue":"2","oa":1,"publisher":"American Physical Society","status":"public","external_id":{"isi":["000506843500001"],"arxiv":["1907.02077"]},"_id":"7428","date_published":"2020-01-13T00:00:00Z","arxiv":1,"intvolume":"       101","publication_status":"published","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","year":"2020","citation":{"ama":"Ghazaryan A, Lopes PLS, Hosur P, Gilbert MJ, Ghaemi P. Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological superconductors. <i>Physical Review B</i>. 2020;101(2). doi:<a href=\"https://doi.org/10.1103/PhysRevB.101.020504\">10.1103/PhysRevB.101.020504</a>","mla":"Ghazaryan, Areg, et al. “Effect of Zeeman Coupling on the Majorana Vortex Modes in Iron-Based Topological Superconductors.” <i>Physical Review B</i>, vol. 101, no. 2, 020504, American Physical Society, 2020, doi:<a href=\"https://doi.org/10.1103/PhysRevB.101.020504\">10.1103/PhysRevB.101.020504</a>.","short":"A. Ghazaryan, P.L.S. Lopes, P. Hosur, M.J. Gilbert, P. Ghaemi, Physical Review B 101 (2020).","apa":"Ghazaryan, A., Lopes, P. L. S., Hosur, P., Gilbert, M. J., &#38; Ghaemi, P. (2020). Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological superconductors. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.101.020504\">https://doi.org/10.1103/PhysRevB.101.020504</a>","ista":"Ghazaryan A, Lopes PLS, Hosur P, Gilbert MJ, Ghaemi P. 2020. Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological superconductors. Physical Review B. 101(2), 020504.","ieee":"A. Ghazaryan, P. L. S. Lopes, P. Hosur, M. J. Gilbert, and P. Ghaemi, “Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological superconductors,” <i>Physical Review B</i>, vol. 101, no. 2. American Physical Society, 2020.","chicago":"Ghazaryan, Areg, P. L.S. Lopes, Pavan Hosur, Matthew J. Gilbert, and Pouyan Ghaemi. “Effect of Zeeman Coupling on the Majorana Vortex Modes in Iron-Based Topological Superconductors.” <i>Physical Review B</i>. American Physical Society, 2020. <a href=\"https://doi.org/10.1103/PhysRevB.101.020504\">https://doi.org/10.1103/PhysRevB.101.020504</a>."},"date_created":"2020-02-02T23:01:01Z","abstract":[{"lang":"eng","text":"In the superconducting regime of FeTe(1−x)Sex, there exist two types of vortices which are distinguished by the presence or absence of zero-energy states in their core. To understand their origin, we examine the interplay of Zeeman coupling and superconducting pairings in three-dimensional metals with band inversion. Weak Zeeman fields are found to suppress intraorbital spin-singlet pairing, known to localize the states at the ends of the vortices on the surface. On the other hand, an orbital-triplet pairing is shown to be stable against Zeeman interactions, but leads to delocalized zero-energy Majorana modes which extend through the vortex. In contrast, the finite-energy vortex modes remain localized at the vortex ends even when the pairing is of orbital-triplet form. Phenomenologically, this manifests as an observed disappearance of zero-bias peaks within the cores of topological vortices upon an increase of the applied magnetic field. The presence of magnetic impurities in FeTe(1−x)Sex, which are attracted to the vortices, would lead to such Zeeman-induced delocalization of Majorana modes in a fraction of vortices that capture a large enough number of magnetic impurities. Our results provide an explanation for the dichotomy between topological and nontopological vortices recently observed in FeTe(1−x)Sex."}],"publication":"Physical Review B","type":"journal_article","main_file_link":[{"url":"https://arxiv.org/abs/1907.02077","open_access":"1"}],"month":"01"},{"status":"public","file":[{"access_level":"open_access","content_type":"application/pdf","creator":"koelsboe","checksum":"1df9f8c530b443c0e63a3f2e4fde412e","date_created":"2020-02-06T14:43:54Z","date_updated":"2020-07-14T12:47:58Z","relation":"main_file","file_name":"thesis_ist-final_noack.pdf","file_id":"7461","file_size":76195184},{"file_size":122103715,"file_id":"7462","description":"latex source files, figures","file_name":"latex-files.zip","relation":"source_file","date_created":"2020-02-06T14:52:45Z","date_updated":"2020-07-14T12:47:58Z","checksum":"7a52383c812b0be64d3826546509e5a4","creator":"koelsboe","content_type":"application/x-zip-compressed","access_level":"closed"}],"publisher":"Institute of Science and Technology Austria","oa":1,"article_processing_charge":"No","corr_author":"1","date_published":"2020-02-10T00:00:00Z","_id":"7460","oa_version":"Published Version","file_date_updated":"2020-07-14T12:47:58Z","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","title":"The hole system of triangulated shapes","date_updated":"2026-04-08T07:23:21Z","has_accepted_license":"1","doi":"10.15479/AT:ISTA:7460","day":"10","ddc":["514"],"author":[{"orcid":"0000-0002-4672-8297","first_name":"Katharina","id":"4D4AA390-F248-11E8-B48F-1D18A9856A87","last_name":"Ölsböck","full_name":"Ölsböck, Katharina"}],"language":[{"iso":"eng"}],"department":[{"_id":"HeEd"},{"_id":"GradSch"}],"related_material":{"record":[{"status":"public","id":"6608","relation":"part_of_dissertation"}]},"page":"155","degree_awarded":"PhD","type":"dissertation","abstract":[{"text":"Many methods for the reconstruction of shapes from sets of points produce ordered simplicial complexes, which are collections of vertices, edges, triangles, and their higher-dimensional analogues, called simplices, in which every simplex gets assigned a real value measuring its size. This thesis studies ordered simplicial complexes, with a focus on their topology, which reflects the connectedness of the represented shapes and the presence of holes. We are interested both in understanding better the structure of these complexes, as well as in developing algorithms for applications.\r\n\r\nFor the Delaunay triangulation, the most popular measure for a simplex is the radius of the smallest empty circumsphere. Based on it, we revisit Alpha and Wrap complexes and experimentally determine their probabilistic properties for random data. Also, we prove the existence of tri-partitions, propose algorithms to open and close holes, and extend the concepts from Euclidean to Bregman geometries.","lang":"eng"}],"date_created":"2020-02-06T14:56:53Z","year":"2020","citation":{"ieee":"K. Ölsböck, “The hole system of triangulated shapes,” Institute of Science and Technology Austria, 2020.","chicago":"Ölsböck, Katharina. “The Hole System of Triangulated Shapes.” Institute of Science and Technology Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:7460\">https://doi.org/10.15479/AT:ISTA:7460</a>.","ama":"Ölsböck K. The hole system of triangulated shapes. 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7460\">10.15479/AT:ISTA:7460</a>","mla":"Ölsböck, Katharina. <i>The Hole System of Triangulated Shapes</i>. Institute of Science and Technology Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7460\">10.15479/AT:ISTA:7460</a>.","short":"K. Ölsböck, The Hole System of Triangulated Shapes, Institute of Science and Technology Austria, 2020.","apa":"Ölsböck, K. (2020). <i>The hole system of triangulated shapes</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:7460\">https://doi.org/10.15479/AT:ISTA:7460</a>","ista":"Ölsböck K. 2020. The hole system of triangulated shapes. Institute of Science and Technology Austria."},"month":"02","OA_place":"publisher","supervisor":[{"id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert","first_name":"Herbert","orcid":"0000-0002-9823-6833"}],"publication_status":"published","publication_identifier":{"issn":["2663-337X"]},"keyword":["shape reconstruction","hole manipulation","ordered complexes","Alpha complex","Wrap complex","computational topology","Bregman geometry"],"alternative_title":["ISTA Thesis"],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)"}},{"related_material":{"record":[{"relation":"research_data","status":"deleted","id":"9723"}]},"department":[{"_id":"FlSc"}],"language":[{"iso":"eng"}],"author":[{"full_name":"Dick, Robert A.","last_name":"Dick","first_name":"Robert A."},{"last_name":"Xu","full_name":"Xu, Chaoyi","first_name":"Chaoyi"},{"last_name":"Morado","full_name":"Morado, Dustin R.","first_name":"Dustin R."},{"orcid":"0000-0001-9523-9089","first_name":"Vladyslav","last_name":"Kravchuk","full_name":"Kravchuk, Vladyslav","id":"4D62F2A6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Ricana, Clifton L.","last_name":"Ricana","first_name":"Clifton L."},{"first_name":"Terri D.","last_name":"Lyddon","full_name":"Lyddon, Terri D."},{"first_name":"Arianna M.","full_name":"Broad, Arianna M.","last_name":"Broad"},{"full_name":"Feathers, J. Ryan","last_name":"Feathers","first_name":"J. Ryan"},{"last_name":"Johnson","full_name":"Johnson, Marc C.","first_name":"Marc C."},{"first_name":"Volker M.","full_name":"Vogt, Volker M.","last_name":"Vogt"},{"last_name":"Perilla","full_name":"Perilla, Juan R.","first_name":"Juan R."},{"last_name":"Briggs","full_name":"Briggs, John A. G.","first_name":"John A. G."},{"id":"48AD8942-F248-11E8-B48F-1D18A9856A87","last_name":"Schur","full_name":"Schur, Florian KM","orcid":"0000-0003-4790-8078","first_name":"Florian KM"}],"ddc":["570"],"day":"27","doi":"10.1371/journal.ppat.1008277","scopus_import":"1","has_accepted_license":"1","project":[{"call_identifier":"FWF","grant_number":"P31445","_id":"26736D6A-B435-11E9-9278-68D0E5697425","name":"Structural conservation and diversity in retroviral capsid"}],"date_updated":"2025-04-15T08:24:51Z","title":"Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly","license":"https://creativecommons.org/licenses/by/4.0/","article_type":"original","file_date_updated":"2020-07-14T12:47:59Z","oa_version":"Published Version","volume":16,"article_number":"e1008277","_id":"7464","date_published":"2020-01-27T00:00:00Z","corr_author":"1","article_processing_charge":"No","oa":1,"issue":"1","publisher":"Public Library of Science","file":[{"file_id":"7484","date_created":"2020-02-11T10:07:28Z","date_updated":"2020-07-14T12:47:59Z","relation":"main_file","file_name":"2020_PLOSPatho_Dick.pdf","file_size":4551246,"access_level":"open_access","content_type":"application/pdf","creator":"dernst","checksum":"a297f54d1fef0efe4789ca00f37f241e"}],"status":"public","external_id":{"pmid":["31986188"],"isi":["000510746400010"]},"pmid":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"        16","publication_identifier":{"issn":["1553-7374"]},"publication_status":"published","month":"01","year":"2020","quality_controlled":"1","citation":{"chicago":"Dick, Robert A., Chaoyi Xu, Dustin R. Morado, Vladyslav Kravchuk, Clifton L. Ricana, Terri D. Lyddon, Arianna M. Broad, et al. “Structures of Immature EIAV Gag Lattices Reveal a Conserved Role for IP6 in Lentivirus Assembly.” <i>PLOS Pathogens</i>. Public Library of Science, 2020. <a href=\"https://doi.org/10.1371/journal.ppat.1008277\">https://doi.org/10.1371/journal.ppat.1008277</a>.","ieee":"R. A. Dick <i>et al.</i>, “Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly,” <i>PLOS Pathogens</i>, vol. 16, no. 1. Public Library of Science, 2020.","ista":"Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FK. 2020. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. PLOS Pathogens. 16(1), e1008277.","ama":"Dick RA, Xu C, Morado DR, et al. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. <i>PLOS Pathogens</i>. 2020;16(1). doi:<a href=\"https://doi.org/10.1371/journal.ppat.1008277\">10.1371/journal.ppat.1008277</a>","mla":"Dick, Robert A., et al. “Structures of Immature EIAV Gag Lattices Reveal a Conserved Role for IP6 in Lentivirus Assembly.” <i>PLOS Pathogens</i>, vol. 16, no. 1, e1008277, Public Library of Science, 2020, doi:<a href=\"https://doi.org/10.1371/journal.ppat.1008277\">10.1371/journal.ppat.1008277</a>.","apa":"Dick, R. A., Xu, C., Morado, D. R., Kravchuk, V., Ricana, C. L., Lyddon, T. D., … Schur, F. K. (2020). Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. <i>PLOS Pathogens</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.ppat.1008277\">https://doi.org/10.1371/journal.ppat.1008277</a>","short":"R.A. Dick, C. Xu, D.R. Morado, V. Kravchuk, C.L. Ricana, T.D. Lyddon, A.M. Broad, J.R. Feathers, M.C. Johnson, V.M. Vogt, J.R. Perilla, J.A.G. Briggs, F.K. Schur, PLOS Pathogens 16 (2020)."},"date_created":"2020-02-06T18:47:17Z","abstract":[{"lang":"eng","text":"Retrovirus assembly is driven by the multidomain structural protein Gag. Interactions between the capsid domains (CA) of Gag result in Gag multimerization, leading to an immature virus particle that is formed by a protein lattice based on dimeric, trimeric, and hexameric protein contacts. Among retroviruses the inter- and intra-hexamer contacts differ, especially in the N-terminal sub-domain of CA (CANTD). For HIV-1 the cellular molecule inositol hexakisphosphate (IP6) interacts with and stabilizes the immature hexamer, and is required for production of infectious virus particles. We have used in vitro assembly, cryo-electron tomography and subtomogram averaging, atomistic molecular dynamics simulations and mutational analyses to study the HIV-related lentivirus equine infectious anemia virus (EIAV). In particular, we sought to understand the structural conservation of the immature lentivirus lattice and the role of IP6 in EIAV assembly. Similar to HIV-1, IP6 strongly promoted in vitro assembly of EIAV Gag proteins into virus-like particles (VLPs), which took three morphologically highly distinct forms: narrow tubes, wide tubes, and spheres. Structural characterization of these VLPs to sub-4Å resolution unexpectedly showed that all three morphologies are based on an immature lattice with preserved key structural components, highlighting the structural versatility of CA to form immature assemblies. A direct comparison between EIAV and HIV revealed that both lentiviruses maintain similar immature interfaces, which are established by both conserved and non-conserved residues. In both EIAV and HIV-1, IP6 regulates immature assembly via conserved lysine residues within the CACTD and SP. Lastly, we demonstrate that IP6 stimulates in vitro assembly of immature particles of several other retroviruses in the lentivirus genus, suggesting a conserved role for IP6 in lentiviral assembly."}],"type":"journal_article","publication":"PLOS Pathogens","acknowledged_ssus":[{"_id":"ScienComp"}]},{"month":"04","quality_controlled":"1","year":"2020","citation":{"chicago":"Mazur, Ewa, Michelle C Gallei, Maciek Adamowski, Huibin Han, Hélène S. Robert, and Jiří Friml. “Clathrin-Mediated Trafficking and PIN Trafficking Are Required for Auxin Canalization and Vascular Tissue Formation in Arabidopsis.” <i>Plant Science</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.plantsci.2020.110414\">https://doi.org/10.1016/j.plantsci.2020.110414</a>.","ieee":"E. Mazur, M. C. Gallei, M. Adamowski, H. Han, H. S. Robert, and J. Friml, “Clathrin-mediated trafficking and PIN trafficking are required for auxin canalization and vascular tissue formation in Arabidopsis,” <i>Plant Science</i>, vol. 293, no. 4. Elsevier, 2020.","ista":"Mazur E, Gallei MC, Adamowski M, Han H, Robert HS, Friml J. 2020. Clathrin-mediated trafficking and PIN trafficking are required for auxin canalization and vascular tissue formation in Arabidopsis. Plant Science. 293(4), 110414.","mla":"Mazur, Ewa, et al. “Clathrin-Mediated Trafficking and PIN Trafficking Are Required for Auxin Canalization and Vascular Tissue Formation in Arabidopsis.” <i>Plant Science</i>, vol. 293, no. 4, 110414, Elsevier, 2020, doi:<a href=\"https://doi.org/10.1016/j.plantsci.2020.110414\">10.1016/j.plantsci.2020.110414</a>.","short":"E. Mazur, M.C. Gallei, M. Adamowski, H. Han, H.S. Robert, J. Friml, Plant Science 293 (2020).","apa":"Mazur, E., Gallei, M. C., Adamowski, M., Han, H., Robert, H. S., &#38; Friml, J. (2020). Clathrin-mediated trafficking and PIN trafficking are required for auxin canalization and vascular tissue formation in Arabidopsis. <i>Plant Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.plantsci.2020.110414\">https://doi.org/10.1016/j.plantsci.2020.110414</a>","ama":"Mazur E, Gallei MC, Adamowski M, Han H, Robert HS, Friml J. Clathrin-mediated trafficking and PIN trafficking are required for auxin canalization and vascular tissue formation in Arabidopsis. <i>Plant Science</i>. 2020;293(4). doi:<a href=\"https://doi.org/10.1016/j.plantsci.2020.110414\">10.1016/j.plantsci.2020.110414</a>"},"date_created":"2020-02-09T23:00:50Z","abstract":[{"text":"The flexible development of plants is characterized by a high capacity for post-embryonic organ formation and tissue regeneration, processes, which require tightly regulated intercellular communication and coordinated tissue (re-)polarization. The phytohormone auxin, the main driver for these processes, is able to establish polarized auxin transport channels, which are characterized by the expression and polar, subcellular localization of the PIN1 auxin transport proteins. These channels are demarcating the position of future vascular strands necessary for organ formation and tissue regeneration. Major progress has been made in the last years to understand how PINs can change their polarity in different contexts and thus guide auxin flow through the plant. However, it still remains elusive how auxin mediates the establishment of auxin conducting channels and the formation of vascular tissue and which cellular processes are involved. By the means of sophisticated regeneration experiments combined with local auxin applications in Arabidopsis thaliana inflorescence stems we show that (i) PIN subcellular dynamics, (ii) PIN internalization by clathrin-mediated trafficking and (iii) an intact actin cytoskeleton required for post-endocytic trafficking are indispensable for auxin channel formation, de novo vascular formation and vascular regeneration after wounding. These observations provide novel insights into cellular mechanism of coordinated tissue polarization during auxin canalization.","lang":"eng"}],"publication":"Plant Science","type":"journal_article","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","isi":1,"intvolume":"       293","publication_identifier":{"eissn":["1873-2259"],"issn":["0168-9452"]},"publication_status":"published","_id":"7465","date_published":"2020-04-01T00:00:00Z","corr_author":"1","article_processing_charge":"No","issue":"4","oa":1,"publisher":"Elsevier","file":[{"file_id":"7471","date_updated":"2020-07-14T12:47:59Z","date_created":"2020-02-10T08:59:36Z","relation":"main_file","file_name":"2020_PlantScience_Mazur.pdf","file_size":3499069,"access_level":"open_access","content_type":"application/pdf","creator":"dernst","checksum":"f7f27c6a8fea985ceb9279be2204461c"}],"status":"public","external_id":{"pmid":["32081263"],"isi":["000520609800009"]},"pmid":1,"related_material":{"record":[{"status":"public","id":"11626","relation":"dissertation_contains"}]},"department":[{"_id":"JiFr"}],"language":[{"iso":"eng"}],"author":[{"first_name":"Ewa","full_name":"Mazur, Ewa","last_name":"Mazur"},{"orcid":"0000-0003-1286-7368","first_name":"Michelle C","full_name":"Gallei, Michelle C","last_name":"Gallei","id":"35A03822-F248-11E8-B48F-1D18A9856A87"},{"id":"45F536D2-F248-11E8-B48F-1D18A9856A87","full_name":"Adamowski, Maciek","last_name":"Adamowski","orcid":"0000-0001-6463-5257","first_name":"Maciek"},{"last_name":"Han","full_name":"Han, Huibin","id":"31435098-F248-11E8-B48F-1D18A9856A87","first_name":"Huibin"},{"first_name":"Hélène S.","full_name":"Robert, Hélène S.","last_name":"Robert"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"ddc":["580"],"day":"01","scopus_import":"1","doi":"10.1016/j.plantsci.2020.110414","has_accepted_license":"1","ec_funded":1,"project":[{"_id":"261099A6-B435-11E9-9278-68D0E5697425","grant_number":"742985","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","call_identifier":"H2020"}],"date_updated":"2026-04-07T14:18:57Z","title":"Clathrin-mediated trafficking and PIN trafficking are required for auxin canalization and vascular tissue formation in Arabidopsis","article_type":"original","file_date_updated":"2020-07-14T12:47:59Z","oa_version":"Published Version","volume":293,"article_number":"110414"},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","publication_identifier":{"eissn":["2050-084X"]},"publication_status":"published","intvolume":"         9","month":"01","type":"journal_article","publication":"eLife","quality_controlled":"1","citation":{"ieee":"K. Kierdorf <i>et al.</i>, “Muscle function and homeostasis require cytokine inhibition of AKT activity in Drosophila,” <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.","chicago":"Kierdorf, Katrin, Fabian Hersperger, Jessica Sharrock, Crystal M. Vincent, Pinar Ustaoglu, Jiawen Dou, Attila György, Olaf Groß, Daria E Siekhaus, and Marc S. Dionne. “Muscle Function and Homeostasis Require Cytokine Inhibition of AKT Activity in Drosophila.” <i>ELife</i>. eLife Sciences Publications, 2020. <a href=\"https://doi.org/10.7554/eLife.51595\">https://doi.org/10.7554/eLife.51595</a>.","short":"K. Kierdorf, F. Hersperger, J. Sharrock, C.M. Vincent, P. Ustaoglu, J. Dou, A. György, O. Groß, D.E. Siekhaus, M.S. Dionne, ELife 9 (2020).","apa":"Kierdorf, K., Hersperger, F., Sharrock, J., Vincent, C. M., Ustaoglu, P., Dou, J., … Dionne, M. S. (2020). Muscle function and homeostasis require cytokine inhibition of AKT activity in Drosophila. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.51595\">https://doi.org/10.7554/eLife.51595</a>","mla":"Kierdorf, Katrin, et al. “Muscle Function and Homeostasis Require Cytokine Inhibition of AKT Activity in Drosophila.” <i>ELife</i>, vol. 9, e51595, eLife Sciences Publications, 2020, doi:<a href=\"https://doi.org/10.7554/eLife.51595\">10.7554/eLife.51595</a>.","ama":"Kierdorf K, Hersperger F, Sharrock J, et al. Muscle function and homeostasis require cytokine inhibition of AKT activity in Drosophila. <i>eLife</i>. 2020;9. doi:<a href=\"https://doi.org/10.7554/eLife.51595\">10.7554/eLife.51595</a>","ista":"Kierdorf K, Hersperger F, Sharrock J, Vincent CM, Ustaoglu P, Dou J, György A, Groß O, Siekhaus DE, Dionne MS. 2020. Muscle function and homeostasis require cytokine inhibition of AKT activity in Drosophila. eLife. 9, e51595."},"year":"2020","date_created":"2020-02-09T23:00:51Z","abstract":[{"lang":"eng","text":"Unpaired ligands are secreted signals that act via a GP130-like receptor, domeless, to activate JAK/STAT signalling in Drosophila. Like many mammalian cytokines, unpaireds can be activated by infection and other stresses and can promote insulin resistance in target tissues. However, the importance of this effect in non-inflammatory physiology is unknown. Here, we identify a requirement for unpaired-JAK signalling as a metabolic regulator in healthy adult Drosophila muscle. Adult muscles show basal JAK-STAT signalling activity in the absence of any immune challenge. Plasmatocytes (Drosophila macrophages) are an important source of this tonic signal. Loss of the dome receptor on adult muscles significantly reduces lifespan and causes local and systemic metabolic pathology. These pathologies result from hyperactivation of AKT and consequent deregulation of metabolism. Thus, we identify a cytokine signal that must be received in muscle to control AKT activity and metabolic homeostasis."}],"author":[{"first_name":"Katrin","last_name":"Kierdorf","full_name":"Kierdorf, Katrin"},{"full_name":"Hersperger, Fabian","last_name":"Hersperger","first_name":"Fabian"},{"first_name":"Jessica","full_name":"Sharrock, Jessica","last_name":"Sharrock"},{"last_name":"Vincent","full_name":"Vincent, Crystal M.","first_name":"Crystal M."},{"first_name":"Pinar","last_name":"Ustaoglu","full_name":"Ustaoglu, Pinar"},{"full_name":"Dou, Jiawen","last_name":"Dou","first_name":"Jiawen"},{"orcid":"0000-0002-1819-198X","first_name":"Attila","id":"3BCEDBE0-F248-11E8-B48F-1D18A9856A87","full_name":"György, Attila","last_name":"György"},{"full_name":"Groß, Olaf","last_name":"Groß","first_name":"Olaf"},{"orcid":"0000-0001-8323-8353","first_name":"Daria E","full_name":"Siekhaus, Daria E","last_name":"Siekhaus","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Dionne, Marc S.","last_name":"Dionne","first_name":"Marc S."}],"day":"20","ddc":["570"],"doi":"10.7554/eLife.51595","scopus_import":"1","has_accepted_license":"1","department":[{"_id":"DaSi"}],"language":[{"iso":"eng"}],"article_type":"original","file_date_updated":"2020-07-14T12:47:59Z","oa_version":"Published Version","volume":9,"article_number":"e51595","project":[{"call_identifier":"FWF","grant_number":"P29638","_id":"253B6E48-B435-11E9-9278-68D0E5697425","name":"The role of Drosophila TNF alpha in immune cell invasion"}],"title":"Muscle function and homeostasis require cytokine inhibition of AKT activity in Drosophila","date_updated":"2026-04-03T09:24:34Z","_id":"7466","date_published":"2020-01-20T00:00:00Z","file":[{"checksum":"3a072be843f416c7a7d532a51dc0addb","creator":"dernst","content_type":"application/pdf","access_level":"open_access","file_size":4959933,"file_name":"2020_eLife_Kierdorf.pdf","date_updated":"2020-07-14T12:47:59Z","date_created":"2020-02-10T08:53:16Z","relation":"main_file","file_id":"7470"}],"status":"public","external_id":{"isi":["000512304800001"]},"article_processing_charge":"No","oa":1,"publisher":"eLife Sciences Publications"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","editor":[{"first_name":"Alois","orcid":"0000-0002-5621-8100","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","last_name":"Schlögl","full_name":"Schlögl, Alois"},{"first_name":"Janos","full_name":"Kiss, Janos","last_name":"Kiss","id":"3D3A06F8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Elefante, Stefano","last_name":"Elefante","id":"490F40CE-F248-11E8-B48F-1D18A9856A87","first_name":"Stefano"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publication_status":"published","publication_identifier":{"isbn":["978-3-99078-004-6"]},"month":"02","conference":{"name":"AHPC: Austrian High-Performance-Computing Meeting","location":"Klosterneuburg, Austria","end_date":"2020-02-21","start_date":"2020-02-19"},"page":"72","place":"Klosterneuburg, Austria","type":"book_editor","date_created":"2020-02-11T07:59:04Z","abstract":[{"text":"This booklet is a collection of abstracts presented at the AHPC conference.","lang":"eng"}],"quality_controlled":"1","year":"2020","citation":{"chicago":"Schlögl, Alois, Janos Kiss, and Stefano Elefante, eds. <i>Austrian High-Performance-Computing Meeting (AHPC2020)</i>. Klosterneuburg, Austria: IST Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:7474\">https://doi.org/10.15479/AT:ISTA:7474</a>.","ieee":"A. Schlögl, J. Kiss, and S. Elefante, Eds., <i>Austrian High-Performance-Computing meeting (AHPC2020)</i>. Klosterneuburg, Austria: IST Austria, 2020.","ista":"Schlögl A, Kiss J, Elefante S eds. 2020. Austrian High-Performance-Computing meeting (AHPC2020), Klosterneuburg, Austria: IST Austria, 72p.","ama":"Schlögl A, Kiss J, Elefante S, eds. <i>Austrian High-Performance-Computing Meeting (AHPC2020)</i>. Klosterneuburg, Austria: IST Austria; 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7474\">10.15479/AT:ISTA:7474</a>","apa":"Schlögl, A., Kiss, J., &#38; Elefante, S. (Eds.). (2020). <i>Austrian High-Performance-Computing meeting (AHPC2020)</i>. Presented at the AHPC: Austrian High-Performance-Computing Meeting, Klosterneuburg, Austria: IST Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:7474\">https://doi.org/10.15479/AT:ISTA:7474</a>","short":"A. Schlögl, J. Kiss, S. Elefante, eds., Austrian High-Performance-Computing Meeting (AHPC2020), IST Austria, Klosterneuburg, Austria, 2020.","mla":"Schlögl, Alois, et al., editors. <i>Austrian High-Performance-Computing Meeting (AHPC2020)</i>. IST Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7474\">10.15479/AT:ISTA:7474</a>."},"doi":"10.15479/AT:ISTA:7474","has_accepted_license":"1","ddc":["000"],"day":"19","language":[{"iso":"eng"}],"department":[{"_id":"ScienComp"}],"oa_version":"Published Version","file_date_updated":"2020-07-14T12:47:59Z","title":"Austrian High-Performance-Computing meeting (AHPC2020)","date_updated":"2023-05-16T07:48:28Z","date_published":"2020-02-19T00:00:00Z","_id":"7474","status":"public","file":[{"creator":"schloegl","access_level":"open_access","content_type":"application/pdf","checksum":"49798edb9e57bbd6be18362d1d7b18a9","file_name":"BOOKLET_AHPC2020.final.pdf","relation":"main_file","date_created":"2020-02-19T06:53:38Z","date_updated":"2020-07-14T12:47:59Z","file_id":"7504","file_size":90899507}],"publisher":"IST Austria","article_processing_charge":"No","oa":1},{"publication_identifier":{"issn":["0031-9007","1079-7114"]},"publication_status":"published","intvolume":"       124","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Physical Review Letters","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1905.05505"}],"citation":{"ista":"Ménard GC, Anselmetti GLR, Martinez EA, Puglia D, Malinowski FK, Lee JS, Choi S, Pendharkar M, Palmstrøm CJ, Flensberg K, Marcus CM, Casparis L, Higginbotham AP. 2020. Conductance-matrix symmetries of a three-terminal hybrid device. Physical Review Letters. 124(3), 036802.","ama":"Ménard GC, Anselmetti GLR, Martinez EA, et al. Conductance-matrix symmetries of a three-terminal hybrid device. <i>Physical Review Letters</i>. 2020;124(3). doi:<a href=\"https://doi.org/10.1103/physrevlett.124.036802\">10.1103/physrevlett.124.036802</a>","short":"G.C. Ménard, G.L.R. Anselmetti, E.A. Martinez, D. Puglia, F.K. Malinowski, J.S. Lee, S. Choi, M. Pendharkar, C.J. Palmstrøm, K. Flensberg, C.M. Marcus, L. Casparis, A.P. Higginbotham, Physical Review Letters 124 (2020).","mla":"Ménard, G. C., et al. “Conductance-Matrix Symmetries of a Three-Terminal Hybrid Device.” <i>Physical Review Letters</i>, vol. 124, no. 3, 036802, APS, 2020, doi:<a href=\"https://doi.org/10.1103/physrevlett.124.036802\">10.1103/physrevlett.124.036802</a>.","apa":"Ménard, G. C., Anselmetti, G. L. R., Martinez, E. A., Puglia, D., Malinowski, F. K., Lee, J. S., … Higginbotham, A. P. (2020). Conductance-matrix symmetries of a three-terminal hybrid device. <i>Physical Review Letters</i>. APS. <a href=\"https://doi.org/10.1103/physrevlett.124.036802\">https://doi.org/10.1103/physrevlett.124.036802</a>","chicago":"Ménard, G. C., G. L. R. Anselmetti, E. A. Martinez, D. Puglia, F. K. Malinowski, J. S. Lee, S. Choi, et al. “Conductance-Matrix Symmetries of a Three-Terminal Hybrid Device.” <i>Physical Review Letters</i>. APS, 2020. <a href=\"https://doi.org/10.1103/physrevlett.124.036802\">https://doi.org/10.1103/physrevlett.124.036802</a>.","ieee":"G. C. Ménard <i>et al.</i>, “Conductance-matrix symmetries of a three-terminal hybrid device,” <i>Physical Review Letters</i>, vol. 124, no. 3. APS, 2020."},"quality_controlled":"1","year":"2020","abstract":[{"text":"We present conductance-matrix measurements of a three-terminal superconductor-semiconductor hybrid device consisting of two normal leads and one superconducting lead. Using a symmetry decomposition of the conductance, we find that antisymmetric components of pairs of local and nonlocal conductances qualitatively match at energies below the superconducting gap, and we compare this finding with symmetry relations based on a noninteracting scattering matrix approach. Further, the local charge character of Andreev bound states is extracted from the symmetry-decomposed conductance data and is found to be similar at both ends of the device and tunable with gate voltage. Finally, we measure the conductance matrix as a function of magnetic field and identify correlated splittings in low-energy features, demonstrating how conductance-matrix measurements can complement traditional single-probe measurements in the search for Majorana zero modes.","lang":"eng"}],"date_created":"2020-02-11T08:50:02Z","month":"01","extern":"1","article_type":"original","article_number":"036802","volume":124,"oa_version":"Preprint","title":"Conductance-matrix symmetries of a three-terminal hybrid device","date_updated":"2021-01-12T08:13:48Z","day":"24","author":[{"first_name":"G. C.","last_name":"Ménard","full_name":"Ménard, G. C."},{"full_name":"Anselmetti, G. L. R.","last_name":"Anselmetti","first_name":"G. L. R."},{"first_name":"E. A.","full_name":"Martinez, E. A.","last_name":"Martinez"},{"first_name":"D.","full_name":"Puglia, D.","last_name":"Puglia"},{"first_name":"F. K.","last_name":"Malinowski","full_name":"Malinowski, F. K."},{"first_name":"J. S.","last_name":"Lee","full_name":"Lee, J. S."},{"first_name":"S.","last_name":"Choi","full_name":"Choi, S."},{"full_name":"Pendharkar, M.","last_name":"Pendharkar","first_name":"M."},{"last_name":"Palmstrøm","full_name":"Palmstrøm, C. J.","first_name":"C. J."},{"full_name":"Flensberg, K.","last_name":"Flensberg","first_name":"K."},{"last_name":"Marcus","full_name":"Marcus, C. M.","first_name":"C. M."},{"first_name":"L.","full_name":"Casparis, L.","last_name":"Casparis"},{"orcid":"0000-0003-2607-2363","first_name":"Andrew P","full_name":"Higginbotham, Andrew P","last_name":"Higginbotham","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87"}],"doi":"10.1103/physrevlett.124.036802","language":[{"iso":"eng"}],"status":"public","external_id":{"arxiv":["1905.05505"]},"issue":"3","oa":1,"article_processing_charge":"No","publisher":"APS","arxiv":1,"_id":"7477","date_published":"2020-01-24T00:00:00Z"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0031-9007","1079-7114"]},"publication_status":"published","intvolume":"       124","month":"01","main_file_link":[{"url":"https://arxiv.org/abs/1905.05438","open_access":"1"}],"type":"journal_article","publication":"Physical Review Letters","abstract":[{"text":"Two-terminal conductance spectroscopy of superconducting devices is a common tool for probing Andreev and Majorana bound states. Here, we study theoretically a three-terminal setup, with two normal leads coupled to a grounded superconducting terminal. Using a single-electron scattering matrix, we derive the subgap conductance matrix for the normal leads and discuss its symmetries. In particular, we show that the local and the nonlocal elements of the conductance matrix have pairwise identical antisymmetric components. Moreover, we find that the nonlocal elements are directly related to the local BCS charges of the bound states close to the normal probes and we show how the BCS charge of overlapping Majorana bound states can be extracted from experiments.","lang":"eng"}],"date_created":"2020-02-11T08:55:40Z","quality_controlled":"1","citation":{"ieee":"J. Danon, A. B. Hellenes, E. B. Hansen, L. Casparis, A. P. Higginbotham, and K. Flensberg, “Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges,” <i>Physical Review Letters</i>, vol. 124, no. 3. APS, 2020.","chicago":"Danon, Jeroen, Anna Birk Hellenes, Esben Bork Hansen, Lucas Casparis, Andrew P Higginbotham, and Karsten Flensberg. “Nonlocal Conductance Spectroscopy of Andreev Bound States: Symmetry Relations and BCS Charges.” <i>Physical Review Letters</i>. APS, 2020. <a href=\"https://doi.org/10.1103/physrevlett.124.036801\">https://doi.org/10.1103/physrevlett.124.036801</a>.","mla":"Danon, Jeroen, et al. “Nonlocal Conductance Spectroscopy of Andreev Bound States: Symmetry Relations and BCS Charges.” <i>Physical Review Letters</i>, vol. 124, no. 3, 036801, APS, 2020, doi:<a href=\"https://doi.org/10.1103/physrevlett.124.036801\">10.1103/physrevlett.124.036801</a>.","apa":"Danon, J., Hellenes, A. B., Hansen, E. B., Casparis, L., Higginbotham, A. P., &#38; Flensberg, K. (2020). Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges. <i>Physical Review Letters</i>. APS. <a href=\"https://doi.org/10.1103/physrevlett.124.036801\">https://doi.org/10.1103/physrevlett.124.036801</a>","short":"J. Danon, A.B. Hellenes, E.B. Hansen, L. Casparis, A.P. Higginbotham, K. Flensberg, Physical Review Letters 124 (2020).","ama":"Danon J, Hellenes AB, Hansen EB, Casparis L, Higginbotham AP, Flensberg K. Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges. <i>Physical Review Letters</i>. 2020;124(3). doi:<a href=\"https://doi.org/10.1103/physrevlett.124.036801\">10.1103/physrevlett.124.036801</a>","ista":"Danon J, Hellenes AB, Hansen EB, Casparis L, Higginbotham AP, Flensberg K. 2020. Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges. Physical Review Letters. 124(3), 036801."},"year":"2020","doi":"10.1103/physrevlett.124.036801","day":"24","author":[{"first_name":"Jeroen","last_name":"Danon","full_name":"Danon, Jeroen"},{"first_name":"Anna Birk","full_name":"Hellenes, Anna Birk","last_name":"Hellenes"},{"full_name":"Hansen, Esben Bork","last_name":"Hansen","first_name":"Esben Bork"},{"first_name":"Lucas","last_name":"Casparis","full_name":"Casparis, Lucas"},{"id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","last_name":"Higginbotham","full_name":"Higginbotham, Andrew P","first_name":"Andrew P","orcid":"0000-0003-2607-2363"},{"full_name":"Flensberg, Karsten","last_name":"Flensberg","first_name":"Karsten"}],"language":[{"iso":"eng"}],"article_number":"036801","volume":124,"oa_version":"Preprint","extern":"1","article_type":"original","date_updated":"2021-01-12T08:13:48Z","title":"Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges","arxiv":1,"date_published":"2020-01-24T00:00:00Z","_id":"7478","external_id":{"arxiv":["1905.05438"]},"status":"public","publisher":"APS","oa":1,"issue":"3","article_processing_charge":"No"},{"article_processing_charge":"No","issue":"1","oa":1,"publisher":"Springer Nature","file":[{"creator":"dernst","access_level":"open_access","content_type":"application/pdf","checksum":"c780bd87476a9c9e12668ff66de3dc96","file_name":"2020_ScientificReport_Lopez.pdf","date_updated":"2020-07-14T12:47:59Z","date_created":"2020-02-18T07:43:21Z","relation":"main_file","file_id":"7495","file_size":4703751}],"external_id":{"isi":["000560694800012"],"pmid":["32042057"]},"status":"public","pmid":1,"_id":"7487","date_published":"2020-02-10T00:00:00Z","title":"Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation","date_updated":"2026-04-02T11:51:06Z","article_type":"original","file_date_updated":"2020-07-14T12:47:59Z","oa_version":"Published Version","volume":10,"article_number":"2259","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/s41598-020-80651-0"}]},"department":[{"_id":"CaBe"}],"language":[{"iso":"eng"}],"author":[{"last_name":"López De La Oliva","full_name":"López De La Oliva, Amada R.","first_name":"Amada R."},{"first_name":"José A.","full_name":"Campos-Sandoval, José A.","last_name":"Campos-Sandoval"},{"full_name":"Gómez-García, María C.","last_name":"Gómez-García","first_name":"María C."},{"first_name":"Carolina","full_name":"Cardona, Carolina","last_name":"Cardona"},{"last_name":"Martín-Rufián","full_name":"Martín-Rufián, Mercedes","first_name":"Mercedes"},{"first_name":"Fernando J.","full_name":"Sialana, Fernando J.","last_name":"Sialana"},{"first_name":"Laura","last_name":"Castilla","full_name":"Castilla, Laura"},{"first_name":"Narkhyun","id":"3A5F7CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Bae","full_name":"Bae, Narkhyun"},{"first_name":"Carolina","last_name":"Lobo","full_name":"Lobo, Carolina"},{"first_name":"Ana","full_name":"Peñalver, Ana","last_name":"Peñalver"},{"last_name":"García-Frutos","full_name":"García-Frutos, Marina","first_name":"Marina"},{"first_name":"David","full_name":"Carro, David","last_name":"Carro"},{"first_name":"Victoria","full_name":"Enrique, Victoria","last_name":"Enrique"},{"last_name":"Paz","full_name":"Paz, José C.","first_name":"José C."},{"first_name":"Raghavendra G.","last_name":"Mirmira","full_name":"Mirmira, Raghavendra G."},{"last_name":"Gutiérrez","full_name":"Gutiérrez, Antonia","first_name":"Antonia"},{"first_name":"Francisco J.","last_name":"Alonso","full_name":"Alonso, Francisco J."},{"first_name":"Juan A.","full_name":"Segura, Juan A.","last_name":"Segura"},{"first_name":"José M.","full_name":"Matés, José M.","last_name":"Matés"},{"full_name":"Lubec, Gert","last_name":"Lubec","first_name":"Gert"},{"full_name":"Márquez, Javier","last_name":"Márquez","first_name":"Javier"}],"day":"10","ddc":["570"],"scopus_import":"1","doi":"10.1038/s41598-020-58264-4","has_accepted_license":"1","quality_controlled":"1","year":"2020","citation":{"ista":"López De La Oliva AR, Campos-Sandoval JA, Gómez-García MC, Cardona C, Martín-Rufián M, Sialana FJ, Castilla L, Bae N, Lobo C, Peñalver A, García-Frutos M, Carro D, Enrique V, Paz JC, Mirmira RG, Gutiérrez A, Alonso FJ, Segura JA, Matés JM, Lubec G, Márquez J. 2020. Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation. Scientific reports. 10(1), 2259.","ama":"López De La Oliva AR, Campos-Sandoval JA, Gómez-García MC, et al. Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation. <i>Scientific reports</i>. 2020;10(1). doi:<a href=\"https://doi.org/10.1038/s41598-020-58264-4\">10.1038/s41598-020-58264-4</a>","apa":"López De La Oliva, A. R., Campos-Sandoval, J. A., Gómez-García, M. C., Cardona, C., Martín-Rufián, M., Sialana, F. J., … Márquez, J. (2020). Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-020-58264-4\">https://doi.org/10.1038/s41598-020-58264-4</a>","short":"A.R. López De La Oliva, J.A. Campos-Sandoval, M.C. Gómez-García, C. Cardona, M. Martín-Rufián, F.J. Sialana, L. Castilla, N. Bae, C. Lobo, A. Peñalver, M. García-Frutos, D. Carro, V. Enrique, J.C. Paz, R.G. Mirmira, A. Gutiérrez, F.J. Alonso, J.A. Segura, J.M. Matés, G. Lubec, J. Márquez, Scientific Reports 10 (2020).","mla":"López De La Oliva, Amada R., et al. “Nuclear Translocation of Glutaminase GLS2 in Human Cancer Cells Associates with Proliferation Arrest and Differentiation.” <i>Scientific Reports</i>, vol. 10, no. 1, 2259, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s41598-020-58264-4\">10.1038/s41598-020-58264-4</a>.","chicago":"López De La Oliva, Amada R., José A. Campos-Sandoval, María C. Gómez-García, Carolina Cardona, Mercedes Martín-Rufián, Fernando J. Sialana, Laura Castilla, et al. “Nuclear Translocation of Glutaminase GLS2 in Human Cancer Cells Associates with Proliferation Arrest and Differentiation.” <i>Scientific Reports</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41598-020-58264-4\">https://doi.org/10.1038/s41598-020-58264-4</a>.","ieee":"A. R. López De La Oliva <i>et al.</i>, “Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation,” <i>Scientific reports</i>, vol. 10, no. 1. Springer Nature, 2020."},"date_created":"2020-02-16T23:00:49Z","abstract":[{"text":"Glutaminase (GA) catalyzes the first step in mitochondrial glutaminolysis playing a key role in cancer metabolic reprogramming. Humans express two types of GA isoforms: GLS and GLS2. GLS isozymes have been consistently related to cell proliferation, but the role of GLS2 in cancer remains poorly understood. GLS2 is repressed in many tumor cells and a better understanding of its function in tumorigenesis may further the development of new therapeutic approaches. We analyzed GLS2 expression in HCC, GBM and neuroblastoma cells, as well as in monkey COS-7 cells. We studied GLS2 expression after induction of differentiation with phorbol ester (PMA) and transduction with the full-length cDNA of GLS2. In parallel, we investigated cell cycle progression and levels of p53, p21 and c-Myc proteins. Using the baculovirus system, human GLS2 protein was overexpressed, purified and analyzed for posttranslational modifications employing a proteomics LC-MS/MS platform. We have demonstrated a dual targeting of GLS2 in human cancer cells. Immunocytochemistry and subcellular fractionation gave consistent results demonstrating nuclear and mitochondrial locations, with the latter being predominant. Nuclear targeting was confirmed in cancer cells overexpressing c-Myc- and GFP-tagged GLS2 proteins. We assessed the subnuclear location finding a widespread distribution of GLS2 in the nucleoplasm without clear overlapping with specific nuclear substructures. GLS2 expression and nuclear accrual notably increased by treatment of SH-SY5Y cells with PMA and it correlated with cell cycle arrest at G2/M, upregulation of tumor suppressor p53 and p21 protein. A similar response was obtained by overexpression of GLS2 in T98G glioma cells, including downregulation of oncogene c-Myc. Furthermore, human GLS2 was identified as being hypusinated by MS analysis, a posttranslational modification which may be relevant for its nuclear targeting and/or function. Our studies provide evidence for a tumor suppressor role of GLS2 in certain types of cancer. The data imply that GLS2 can be regarded as a highly mobile and multilocalizing protein translocated to both mitochondria and nuclei. Upregulation of GLS2 in cancer cells induced an antiproliferative response with cell cycle arrest at the G2/M phase.","lang":"eng"}],"type":"journal_article","publication":"Scientific reports","month":"02","intvolume":"        10","publication_status":"published","publication_identifier":{"eissn":["2045-2322"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","isi":1},{"corr_author":"1","_id":"7488","date_published":"2020-02-04T00:00:00Z","external_id":{"isi":["000522551606028"]},"file":[{"file_id":"7496","date_updated":"2020-07-14T12:47:59Z","date_created":"2020-02-18T07:49:22Z","relation":"main_file","file_name":"2020_IntMolecSciences_Latorre.pdf","file_size":4271234,"access_level":"open_access","content_type":"application/pdf","creator":"dernst","checksum":"0e6658c4fe329d55d4d9bef01c5b15d0"}],"status":"public","article_processing_charge":"No","oa":1,"issue":"3","publisher":"MDPI","author":[{"last_name":"Latorre-Pellicer","full_name":"Latorre-Pellicer, Ana","first_name":"Ana"},{"last_name":"Ascaso","full_name":"Ascaso, Ángela","first_name":"Ángela"},{"first_name":"Laura","full_name":"Trujillano, Laura","last_name":"Trujillano"},{"first_name":"Marta","last_name":"Gil-Salvador","full_name":"Gil-Salvador, Marta"},{"first_name":"Maria","full_name":"Arnedo, Maria","last_name":"Arnedo"},{"first_name":"Cristina","last_name":"Lucia-Campos","full_name":"Lucia-Campos, Cristina"},{"first_name":"Rebeca","full_name":"Antoñanzas-Pérez, Rebeca","last_name":"Antoñanzas-Pérez"},{"first_name":"Iñigo","full_name":"Marcos-Alcalde, Iñigo","last_name":"Marcos-Alcalde"},{"first_name":"Ilaria","last_name":"Parenti","full_name":"Parenti, Ilaria","id":"D93538B0-5B71-11E9-AC62-02EBE5697425"},{"last_name":"Bueno-Lozano","full_name":"Bueno-Lozano, Gloria","first_name":"Gloria"},{"first_name":"Antonio","last_name":"Musio","full_name":"Musio, Antonio"},{"last_name":"Puisac","full_name":"Puisac, Beatriz","first_name":"Beatriz"},{"last_name":"Kaiser","full_name":"Kaiser, Frank J.","first_name":"Frank J."},{"first_name":"Feliciano J.","last_name":"Ramos","full_name":"Ramos, Feliciano J."},{"first_name":"Paulino","last_name":"Gómez-Puertas","full_name":"Gómez-Puertas, Paulino"},{"full_name":"Pié, Juan","last_name":"Pié","first_name":"Juan"}],"ddc":["570"],"day":"04","doi":"10.3390/ijms21031042","scopus_import":"1","has_accepted_license":"1","department":[{"_id":"GaNo"}],"language":[{"iso":"eng"}],"article_type":"original","file_date_updated":"2020-07-14T12:47:59Z","oa_version":"Published Version","volume":21,"article_number":"1042","title":"Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes","date_updated":"2025-07-10T11:54:41Z","month":"02","publication":"International Journal of Molecular Sciences","type":"journal_article","quality_controlled":"1","year":"2020","citation":{"ieee":"A. Latorre-Pellicer <i>et al.</i>, “Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes,” <i>International Journal of Molecular Sciences</i>, vol. 21, no. 3. MDPI, 2020.","chicago":"Latorre-Pellicer, Ana, Ángela Ascaso, Laura Trujillano, Marta Gil-Salvador, Maria Arnedo, Cristina Lucia-Campos, Rebeca Antoñanzas-Pérez, et al. “Evaluating Face2Gene as a Tool to Identify Cornelia de Lange Syndrome by Facial Phenotypes.” <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href=\"https://doi.org/10.3390/ijms21031042\">https://doi.org/10.3390/ijms21031042</a>.","mla":"Latorre-Pellicer, Ana, et al. “Evaluating Face2Gene as a Tool to Identify Cornelia de Lange Syndrome by Facial Phenotypes.” <i>International Journal of Molecular Sciences</i>, vol. 21, no. 3, 1042, MDPI, 2020, doi:<a href=\"https://doi.org/10.3390/ijms21031042\">10.3390/ijms21031042</a>.","short":"A. Latorre-Pellicer, Á. Ascaso, L. Trujillano, M. Gil-Salvador, M. Arnedo, C. Lucia-Campos, R. Antoñanzas-Pérez, I. Marcos-Alcalde, I. Parenti, G. Bueno-Lozano, A. Musio, B. Puisac, F.J. Kaiser, F.J. Ramos, P. Gómez-Puertas, J. Pié, International Journal of Molecular Sciences 21 (2020).","apa":"Latorre-Pellicer, A., Ascaso, Á., Trujillano, L., Gil-Salvador, M., Arnedo, M., Lucia-Campos, C., … Pié, J. (2020). Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes. <i>International Journal of Molecular Sciences</i>. MDPI. <a href=\"https://doi.org/10.3390/ijms21031042\">https://doi.org/10.3390/ijms21031042</a>","ama":"Latorre-Pellicer A, Ascaso Á, Trujillano L, et al. Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes. <i>International Journal of Molecular Sciences</i>. 2020;21(3). doi:<a href=\"https://doi.org/10.3390/ijms21031042\">10.3390/ijms21031042</a>","ista":"Latorre-Pellicer A, Ascaso Á, Trujillano L, Gil-Salvador M, Arnedo M, Lucia-Campos C, Antoñanzas-Pérez R, Marcos-Alcalde I, Parenti I, Bueno-Lozano G, Musio A, Puisac B, Kaiser FJ, Ramos FJ, Gómez-Puertas P, Pié J. 2020. Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes. International Journal of Molecular Sciences. 21(3), 1042."},"date_created":"2020-02-16T23:00:49Z","abstract":[{"text":"Characteristic or classic phenotype of Cornelia de Lange syndrome (CdLS) is associated with a recognisable facial pattern. However, the heterogeneity in causal genes and the presence of overlapping syndromes have made it increasingly difficult to diagnose only by clinical features. DeepGestalt technology, and its app Face2Gene, is having a growing impact on the diagnosis and management of genetic diseases by analysing the features of affected individuals. Here, we performed a phenotypic study on a cohort of 49 individuals harbouring causative variants in known CdLS genes in order to evaluate Face2Gene utility and sensitivity in the clinical diagnosis of CdLS. Based on the profile images of patients, a diagnosis of CdLS was within the top five predicted syndromes for 97.9% of our cases and even listed as first prediction for 83.7%. The age of patients did not seem to affect the prediction accuracy, whereas our results indicate a correlation between the clinical score and affected genes. Furthermore, each gene presents a different pattern recognition that may be used to develop new neural networks with the goal of separating different genetic subtypes in CdLS. Overall, we conclude that computer-assisted image analysis based on deep learning could support the clinical diagnosis of CdLS.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publication_identifier":{"eissn":["1422-0067"],"issn":["1661-6596"]},"intvolume":"        21"},{"doi":"10.1007/s00205-019-01486-2","scopus_import":"1","has_accepted_license":"1","author":[{"first_name":"Julian L","orcid":"0000-0002-0479-558X","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","full_name":"Fischer, Julian L","last_name":"Fischer"},{"full_name":"Hensel, Sebastian","last_name":"Hensel","id":"4D23B7DA-F248-11E8-B48F-1D18A9856A87","first_name":"Sebastian","orcid":"0000-0001-7252-8072"}],"ddc":["530","532"],"day":"01","language":[{"iso":"eng"}],"related_material":{"record":[{"status":"public","id":"10007","relation":"dissertation_contains"}]},"department":[{"_id":"JuFi"}],"oa_version":"Published Version","volume":236,"article_type":"original","file_date_updated":"2020-11-20T09:14:22Z","title":"Weak–strong uniqueness for the Navier–Stokes equation for two fluids with surface tension","date_updated":"2026-04-08T07:01:01Z","project":[{"call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","name":"International IST Doctoral Program"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"ec_funded":1,"corr_author":"1","date_published":"2020-05-01T00:00:00Z","_id":"7489","file":[{"file_size":1897571,"file_id":"8779","relation":"main_file","date_updated":"2020-11-20T09:14:22Z","date_created":"2020-11-20T09:14:22Z","file_name":"2020_ArchRatMechAn_Fischer.pdf","checksum":"f107e21b58f5930876f47144be37cf6c","success":1,"content_type":"application/pdf","access_level":"open_access","creator":"dernst"}],"external_id":{"isi":["000511060200001"]},"status":"public","publisher":"Springer Nature","article_processing_charge":"Yes (via OA deal)","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publication_identifier":{"issn":["0003-9527"],"eissn":["1432-0673"]},"publication_status":"published","intvolume":"       236","month":"05","page":"967-1087","publication":"Archive for Rational Mechanics and Analysis","type":"journal_article","date_created":"2020-02-16T23:00:50Z","abstract":[{"lang":"eng","text":"In the present work, we consider the evolution of two fluids separated by a sharp interface in the presence of surface tension—like, for example, the evolution of oil bubbles in water. Our main result is a weak–strong uniqueness principle for the corresponding free boundary problem for the incompressible Navier–Stokes equation: as long as a strong solution exists, any varifold solution must coincide with it. In particular, in the absence of physical singularities, the concept of varifold solutions—whose global in time existence has been shown by Abels (Interfaces Free Bound 9(1):31–65, 2007) for general initial data—does not introduce a mechanism for non-uniqueness. The key ingredient of our approach is the construction of a relative entropy functional capable of controlling the interface error. If the viscosities of the two fluids do not coincide, even for classical (strong) solutions the gradient of the velocity field becomes discontinuous at the interface, introducing the need for a careful additional adaption of the relative entropy."}],"citation":{"chicago":"Fischer, Julian L, and Sebastian Hensel. “Weak–Strong Uniqueness for the Navier–Stokes Equation for Two Fluids with Surface Tension.” <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s00205-019-01486-2\">https://doi.org/10.1007/s00205-019-01486-2</a>.","ieee":"J. L. Fischer and S. Hensel, “Weak–strong uniqueness for the Navier–Stokes equation for two fluids with surface tension,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 236. Springer Nature, pp. 967–1087, 2020.","ista":"Fischer JL, Hensel S. 2020. Weak–strong uniqueness for the Navier–Stokes equation for two fluids with surface tension. Archive for Rational Mechanics and Analysis. 236, 967–1087.","apa":"Fischer, J. L., &#38; Hensel, S. (2020). Weak–strong uniqueness for the Navier–Stokes equation for two fluids with surface tension. <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00205-019-01486-2\">https://doi.org/10.1007/s00205-019-01486-2</a>","short":"J.L. Fischer, S. Hensel, Archive for Rational Mechanics and Analysis 236 (2020) 967–1087.","mla":"Fischer, Julian L., and Sebastian Hensel. “Weak–Strong Uniqueness for the Navier–Stokes Equation for Two Fluids with Surface Tension.” <i>Archive for Rational Mechanics and Analysis</i>, vol. 236, Springer Nature, 2020, pp. 967–1087, doi:<a href=\"https://doi.org/10.1007/s00205-019-01486-2\">10.1007/s00205-019-01486-2</a>.","ama":"Fischer JL, Hensel S. Weak–strong uniqueness for the Navier–Stokes equation for two fluids with surface tension. <i>Archive for Rational Mechanics and Analysis</i>. 2020;236:967-1087. doi:<a href=\"https://doi.org/10.1007/s00205-019-01486-2\">10.1007/s00205-019-01486-2</a>"},"quality_controlled":"1","year":"2020"},{"date_published":"2020-01-23T00:00:00Z","_id":"7490","publisher":"eLife Sciences Publications","oa":1,"article_processing_charge":"No","pmid":1,"status":"public","external_id":{"pmid":["31971511"],"isi":["000514104100001"]},"file":[{"creator":"dernst","content_type":"application/pdf","access_level":"open_access","checksum":"2052daa4be5019534f3a42f200a09f32","file_name":"2020_eLife_Narasimhan.pdf","relation":"main_file","date_updated":"2020-07-14T12:47:59Z","date_created":"2020-02-18T07:21:16Z","file_id":"7494","file_size":7247468}],"language":[{"iso":"eng"}],"department":[{"_id":"JiFr"},{"_id":"GaTk"},{"_id":"EM-Fac"},{"_id":"SyCr"}],"has_accepted_license":"1","scopus_import":"1","doi":"10.7554/eLife.52067","day":"23","ddc":["570","580"],"author":[{"first_name":"Madhumitha","orcid":"0000-0002-8600-0671","full_name":"Narasimhan, Madhumitha","last_name":"Narasimhan","id":"44BF24D0-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Johnson","full_name":"Johnson, Alexander J","id":"46A62C3A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2739-8843","first_name":"Alexander J"},{"full_name":"Prizak, Roshan","last_name":"Prizak","id":"4456104E-F248-11E8-B48F-1D18A9856A87","first_name":"Roshan"},{"full_name":"Kaufmann, Walter","last_name":"Kaufmann","id":"3F99E422-F248-11E8-B48F-1D18A9856A87","first_name":"Walter","orcid":"0000-0001-9735-5315"},{"orcid":"0000-0002-0471-8285","first_name":"Shutang","last_name":"Tan","full_name":"Tan, Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Casillas Perez, Barbara E","last_name":"Casillas Perez","id":"351ED2AA-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara E"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","last_name":"Friml"}],"title":"Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants","date_updated":"2025-04-14T07:45:03Z","project":[{"name":"Tracing Evolution of Auxin Transport and Polarity in Plants","_id":"261099A6-B435-11E9-9278-68D0E5697425","grant_number":"742985","call_identifier":"H2020"},{"call_identifier":"FWF","_id":"26538374-B435-11E9-9278-68D0E5697425","grant_number":"I03630","name":"Molecular mechanisms of endocytic cargo recognition in plants"}],"ec_funded":1,"article_number":"e52067","volume":9,"oa_version":"Published Version","file_date_updated":"2020-07-14T12:47:59Z","article_type":"original","month":"01","abstract":[{"lang":"eng","text":"In plants, clathrin mediated endocytosis (CME) represents the major route for cargo internalisation from the cell surface. It has been assumed to operate in an evolutionary conserved manner as in yeast and animals. Here we report characterisation of ultrastructure, dynamics and mechanisms of plant CME as allowed by our advancement in electron microscopy and quantitative live imaging techniques. Arabidopsis CME appears to follow the constant curvature model and the bona fide CME population generates vesicles of a predominantly hexagonal-basket type; larger and with faster kinetics than in other models. Contrary to the existing paradigm, actin is dispensable for CME events at the plasma membrane but plays a unique role in collecting endocytic vesicles, sorting of internalised cargos and directional endosome movement that itself actively promote CME events. Internalized vesicles display a strongly delayed and sequential uncoating. These unique features highlight the independent evolution of the plant CME mechanism during the autonomous rise of multicellularity in eukaryotes."}],"date_created":"2020-02-16T23:00:50Z","citation":{"ieee":"M. Narasimhan <i>et al.</i>, “Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants,” <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.","chicago":"Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann, Shutang Tan, Barbara E Casillas Perez, and Jiří Friml. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>. eLife Sciences Publications, 2020. <a href=\"https://doi.org/10.7554/eLife.52067\">https://doi.org/10.7554/eLife.52067</a>.","mla":"Narasimhan, Madhumitha, et al. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>, vol. 9, e52067, eLife Sciences Publications, 2020, doi:<a href=\"https://doi.org/10.7554/eLife.52067\">10.7554/eLife.52067</a>.","apa":"Narasimhan, M., Johnson, A. J., Prizak, R., Kaufmann, W., Tan, S., Casillas Perez, B. E., &#38; Friml, J. (2020). Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.52067\">https://doi.org/10.7554/eLife.52067</a>","short":"M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020).","ama":"Narasimhan M, Johnson AJ, Prizak R, et al. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. <i>eLife</i>. 2020;9. doi:<a href=\"https://doi.org/10.7554/eLife.52067\">10.7554/eLife.52067</a>","ista":"Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE, Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. eLife. 9, e52067."},"year":"2020","quality_controlled":"1","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"Bio"},{"_id":"EM-Fac"}],"publication":"eLife","type":"journal_article","isi":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"intvolume":"         9","publication_status":"published","publication_identifier":{"eissn":["2050-084X"]}},{"scopus_import":"1","doi":"10.1111/jipb.12905","author":[{"full_name":"Han, L","last_name":"Han","first_name":"L"},{"last_name":"Zhou","full_name":"Zhou, X","first_name":"X"},{"full_name":"Zhao, Y","last_name":"Zhao","first_name":"Y"},{"first_name":"S","last_name":"Zhu","full_name":"Zhu, S"},{"first_name":"L","last_name":"Wu","full_name":"Wu, L"},{"full_name":"He, Y","last_name":"He","first_name":"Y"},{"full_name":"Ping, X","last_name":"Ping","first_name":"X"},{"last_name":"Lu","full_name":"Lu, X","first_name":"X"},{"first_name":"W","full_name":"Huang, W","last_name":"Huang"},{"full_name":"Qian, J","last_name":"Qian","first_name":"J"},{"first_name":"L","full_name":"Zhang, L","last_name":"Zhang"},{"full_name":"Jiang, X","last_name":"Jiang","first_name":"X"},{"full_name":"Zhu, D","last_name":"Zhu","first_name":"D"},{"full_name":"Luo, C","last_name":"Luo","first_name":"C"},{"last_name":"Li","full_name":"Li, S","first_name":"S"},{"last_name":"Dong","full_name":"Dong, Q","first_name":"Q"},{"last_name":"Fu","full_name":"Fu, Q","first_name":"Q"},{"first_name":"K","last_name":"Deng","full_name":"Deng, K"},{"last_name":"Wang","full_name":"Wang, X","first_name":"X"},{"full_name":"Wang, L","last_name":"Wang","first_name":"L"},{"last_name":"Peng","full_name":"Peng, S","first_name":"S"},{"first_name":"J","last_name":"Wu","full_name":"Wu, J"},{"first_name":"W","full_name":"Li, W","last_name":"Li"},{"full_name":"Friml, Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","orcid":"0000-0002-8302-7596"},{"first_name":"Y","last_name":"Zhu","full_name":"Zhu, Y"},{"full_name":"He, X","last_name":"He","first_name":"X"},{"full_name":"Du, Y","last_name":"Du","first_name":"Y"}],"day":"01","ddc":["580"],"language":[{"iso":"eng"}],"department":[{"_id":"JiFr"}],"oa_version":"Published Version","volume":62,"article_type":"original","title":"Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid","date_updated":"2026-06-18T19:22:29Z","date_published":"2020-09-01T00:00:00Z","_id":"7497","status":"public","external_id":{"pmid":["31912615"],"isi":["000515803000001"]},"pmid":1,"publisher":"Wiley","acknowledgement":"We thank Professor Jianqiang Wu (Kunming Institute of Botany, Chinese Academy of Sciences) for providing generous support with the IAA and JA measurements. We thank Professor Guohua Xu (Nanjing Agricultural University) for generously providing the Nipponbare rice expressing DR5::GUS. We thank Professor Muyuan Zhu (Zhejiang University) for generously providing a rice line expressing 35S::miR393b. We thank Professor Yinong Yang (Pennsylvania State University) for generously providing the rice line coi1-18. This work was supported by grants from the National Natural Science Foundation of China (31660501, 31460453, 31860064 and 31470382), the Major Special Program for Scientific Research, Education Department of Yunnan Province (ZD2015005), the Project sponsored by SRF for ROCS, SEM ([2013] 1792), the Major Science and Technique Programs in Yunnan Province (2016ZF001), the Key Projects of the Applied Basic Research Plan of Yunnan Province (2017FA018), the National Key R&D Program of China (2018YFD0201100) and the China Agriculture Research System (CARS-21).","article_processing_charge":"No","issue":"9","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"publication_status":"published","publication_identifier":{"eissn":["1744-7909"],"issn":["1672-9072"]},"intvolume":"        62","month":"09","page":"1433-1451","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1111/jipb.12905"}],"publication":"Journal of Integrative Plant Biology","type":"journal_article","date_created":"2020-02-18T10:02:25Z","abstract":[{"text":"Endophytic fungi can be beneficial to plant growth. However, the molecular mechanisms underlying colonization of Acremonium spp. remain unclear. In this study, a novel endophytic Acremonium strain was isolated from the buds of Panax notoginseng and named Acremonium sp. D212. The Acremonium sp. D212 could colonize the roots of P. notoginseng, enhance the resistance of P. notoginseng to root rot disease, and promote root growth and saponin biosynthesis in P. notoginseng. Acremonium sp. D212 could secrete indole‐3‐acetic acid (IAA) and jasmonic acid (JA), and inoculation with the fungus increased the endogenous levels of IAA and JA in P. notoginseng. Colonization of the Acremonium sp. D212 in the roots of the rice line Nipponbare was dependent on the concentration of methyl jasmonate (MeJA) (2 to 15 μM) and 1‐naphthalenacetic acid (NAA) (10 to 20 μM). Moreover, the roots of the JA signalling‐defective coi1‐18 mutant were colonized by Acremonium sp. D212 to a lesser degree than those of the wild‐type Nipponbare and miR393b‐overexpressing lines, and the colonization was rescued by MeJA but not by NAA. It suggests that the cross‐talk between JA signalling and the auxin biosynthetic pathway plays a crucial role in the colonization of Acremonium sp. D212 in host plants.","lang":"eng"}],"quality_controlled":"1","citation":{"chicago":"Han, L, X Zhou, Y Zhao, S Zhu, L Wu, Y He, X Ping, et al. “Colonization of Endophyte Acremonium Sp. D212 in Panax Notoginseng and Rice Mediated by Auxin and Jasmonic Acid.” <i>Journal of Integrative Plant Biology</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/jipb.12905\">https://doi.org/10.1111/jipb.12905</a>.","ieee":"L. Han <i>et al.</i>, “Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid,” <i>Journal of Integrative Plant Biology</i>, vol. 62, no. 9. Wiley, pp. 1433–1451, 2020.","ista":"Han L, Zhou X, Zhao Y, Zhu S, Wu L, He Y, Ping X, Lu X, Huang W, Qian J, Zhang L, Jiang X, Zhu D, Luo C, Li S, Dong Q, Fu Q, Deng K, Wang X, Wang L, Peng S, Wu J, Li W, Friml J, Zhu Y, He X, Du Y. 2020. Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. Journal of Integrative Plant Biology. 62(9), 1433–1451.","ama":"Han L, Zhou X, Zhao Y, et al. Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. <i>Journal of Integrative Plant Biology</i>. 2020;62(9):1433-1451. doi:<a href=\"https://doi.org/10.1111/jipb.12905\">10.1111/jipb.12905</a>","mla":"Han, L., et al. “Colonization of Endophyte Acremonium Sp. D212 in Panax Notoginseng and Rice Mediated by Auxin and Jasmonic Acid.” <i>Journal of Integrative Plant Biology</i>, vol. 62, no. 9, Wiley, 2020, pp. 1433–51, doi:<a href=\"https://doi.org/10.1111/jipb.12905\">10.1111/jipb.12905</a>.","short":"L. Han, X. Zhou, Y. Zhao, S. Zhu, L. Wu, Y. He, X. Ping, X. Lu, W. Huang, J. Qian, L. Zhang, X. Jiang, D. Zhu, C. Luo, S. Li, Q. Dong, Q. Fu, K. Deng, X. Wang, L. Wang, S. Peng, J. Wu, W. Li, J. Friml, Y. Zhu, X. He, Y. Du, Journal of Integrative Plant Biology 62 (2020) 1433–1451.","apa":"Han, L., Zhou, X., Zhao, Y., Zhu, S., Wu, L., He, Y., … Du, Y. (2020). Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. <i>Journal of Integrative Plant Biology</i>. Wiley. <a href=\"https://doi.org/10.1111/jipb.12905\">https://doi.org/10.1111/jipb.12905</a>"},"year":"2020"},{"ec_funded":1,"project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"},{"call_identifier":"FWF","grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering"},{"call_identifier":"FWF","name":"Formal methods for the design and analysis of complex systems","grant_number":"Z211","_id":"25F42A32-B435-11E9-9278-68D0E5697425"}],"date_updated":"2025-04-15T06:26:13Z","title":"Outside the box: Abstraction-based monitoring of neural networks","license":"https://creativecommons.org/licenses/by-nc/4.0/","file_date_updated":"2020-09-21T07:12:32Z","oa_version":"Published Version","volume":325,"department":[{"_id":"ToHe"}],"language":[{"iso":"eng"}],"author":[{"first_name":"Thomas A","orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","last_name":"Henzinger"},{"id":"CBA4D1A8-0FE8-11E9-BDE6-07BFE5697425","full_name":"Lukina, Anna","last_name":"Lukina","first_name":"Anna"},{"id":"3A2F4DCE-F248-11E8-B48F-1D18A9856A87","last_name":"Schilling","full_name":"Schilling, Christian","first_name":"Christian","orcid":"0000-0003-3658-1065"}],"ddc":["000"],"day":"24","doi":"10.3233/FAIA200375","scopus_import":"1","has_accepted_license":"1","article_processing_charge":"No","acknowledgement":"We thank Christoph Lampert and Nikolaus Mayer for fruitful discussions. This research was supported in part by the Austrian Science Fund (FWF) under grants S11402-N23 (RiSE/SHiNE) and Z211-N23 (Wittgenstein Award) and the European Union’s Horizon 2020 research and innovation programme under the Marie SkłodowskaCurie grant agreement No. 754411.","oa":1,"publisher":"IOS Press","external_id":{"isi":["000650971303002"],"arxiv":["1911.09032"]},"file":[{"checksum":"80642fa0b6cd7da95dcd87d63789ad5e","success":1,"creator":"dernst","content_type":"application/pdf","access_level":"open_access","file_size":1692214,"file_id":"8540","file_name":"2020_ECAI_Henzinger.pdf","date_updated":"2020-09-21T07:12:32Z","relation":"main_file","date_created":"2020-09-21T07:12:32Z"}],"status":"public","_id":"7505","date_published":"2020-02-24T00:00:00Z","corr_author":"1","arxiv":1,"alternative_title":["Frontiers in Artificial Intelligence and Applications"],"intvolume":"       325","publication_status":"published","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)"},"isi":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","year":"2020","quality_controlled":"1","citation":{"chicago":"Henzinger, Thomas A, Anna Lukina, and Christian Schilling. “Outside the Box: Abstraction-Based Monitoring of Neural Networks.” In <i>24th European Conference on Artificial Intelligence</i>, 325:2433–40. IOS Press, 2020. <a href=\"https://doi.org/10.3233/FAIA200375\">https://doi.org/10.3233/FAIA200375</a>.","ieee":"T. A. Henzinger, A. Lukina, and C. Schilling, “Outside the box: Abstraction-based monitoring of neural networks,” in <i>24th European Conference on Artificial Intelligence</i>, Santiago de Compostela, Spain, 2020, vol. 325, pp. 2433–2440.","ista":"Henzinger TA, Lukina A, Schilling C. 2020. Outside the box: Abstraction-based monitoring of neural networks. 24th European Conference on Artificial Intelligence. ECAI: European Conference on Artificial Intelligence, Frontiers in Artificial Intelligence and Applications, vol. 325, 2433–2440.","ama":"Henzinger TA, Lukina A, Schilling C. Outside the box: Abstraction-based monitoring of neural networks. In: <i>24th European Conference on Artificial Intelligence</i>. Vol 325. IOS Press; 2020:2433-2440. doi:<a href=\"https://doi.org/10.3233/FAIA200375\">10.3233/FAIA200375</a>","mla":"Henzinger, Thomas A., et al. “Outside the Box: Abstraction-Based Monitoring of Neural Networks.” <i>24th European Conference on Artificial Intelligence</i>, vol. 325, IOS Press, 2020, pp. 2433–40, doi:<a href=\"https://doi.org/10.3233/FAIA200375\">10.3233/FAIA200375</a>.","short":"T.A. Henzinger, A. Lukina, C. Schilling, in:, 24th European Conference on Artificial Intelligence, IOS Press, 2020, pp. 2433–2440.","apa":"Henzinger, T. A., Lukina, A., &#38; Schilling, C. (2020). Outside the box: Abstraction-based monitoring of neural networks. In <i>24th European Conference on Artificial Intelligence</i> (Vol. 325, pp. 2433–2440). Santiago de Compostela, Spain: IOS Press. <a href=\"https://doi.org/10.3233/FAIA200375\">https://doi.org/10.3233/FAIA200375</a>"},"date_created":"2020-02-21T16:44:03Z","abstract":[{"text":"Neural networks have demonstrated unmatched performance in a range of classification tasks. Despite numerous efforts of the research community, novelty detection remains one of the significant limitations of neural networks. The ability to identify previously unseen inputs as novel is crucial for our understanding of the decisions made by neural networks. At runtime, inputs not falling into any of the categories learned during training cannot be classified correctly by the neural network. Existing approaches treat the neural network as a black box and try to detect novel inputs based on the confidence of the output predictions. However, neural networks are not trained to reduce their confidence for novel inputs, which limits the effectiveness of these approaches. We propose a framework to monitor a neural network by observing the hidden layers. We employ a common abstraction from program analysis - boxes - to identify novel behaviors in the monitored layers, i.e., inputs that cause behaviors outside the box. For each neuron, the boxes range over the values seen in training. The framework is efficient and flexible to achieve a desired trade-off between raising false warnings and detecting novel inputs. We illustrate the performance and the robustness to variability in the unknown classes on popular image-classification benchmarks.","lang":"eng"}],"type":"conference","publication":"24th European Conference on Artificial Intelligence","page":"2433-2440","conference":{"name":"ECAI: European Conference on Artificial Intelligence","location":"Santiago de Compostela, Spain","end_date":"2020-09-08","start_date":"2020-08-29"},"month":"02"},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_identifier":{"issn":["0022-4715"],"eissn":["1572-9613"]},"publication_status":"published","intvolume":"       178","month":"02","publication":"Journal of Statistical Physics","type":"journal_article","page":"1362-1396","year":"2020","quality_controlled":"1","citation":{"short":"L. Bossmann, N. Pavlović, P. Pickl, A. Soffer, Journal of Statistical Physics 178 (2020) 1362–1396.","apa":"Bossmann, L., Pavlović, N., Pickl, P., &#38; Soffer, A. (2020). Higher order corrections to the mean-field description of the dynamics of interacting bosons. <i>Journal of Statistical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10955-020-02500-8\">https://doi.org/10.1007/s10955-020-02500-8</a>","mla":"Bossmann, Lea, et al. “Higher Order Corrections to the Mean-Field Description of the Dynamics of Interacting Bosons.” <i>Journal of Statistical Physics</i>, vol. 178, Springer Nature, 2020, pp. 1362–96, doi:<a href=\"https://doi.org/10.1007/s10955-020-02500-8\">10.1007/s10955-020-02500-8</a>.","ama":"Bossmann L, Pavlović N, Pickl P, Soffer A. Higher order corrections to the mean-field description of the dynamics of interacting bosons. <i>Journal of Statistical Physics</i>. 2020;178:1362-1396. doi:<a href=\"https://doi.org/10.1007/s10955-020-02500-8\">10.1007/s10955-020-02500-8</a>","ista":"Bossmann L, Pavlović N, Pickl P, Soffer A. 2020. Higher order corrections to the mean-field description of the dynamics of interacting bosons. Journal of Statistical Physics. 178, 1362–1396.","ieee":"L. Bossmann, N. Pavlović, P. Pickl, and A. Soffer, “Higher order corrections to the mean-field description of the dynamics of interacting bosons,” <i>Journal of Statistical Physics</i>, vol. 178. Springer Nature, pp. 1362–1396, 2020.","chicago":"Bossmann, Lea, Nataša Pavlović, Peter Pickl, and Avy Soffer. “Higher Order Corrections to the Mean-Field Description of the Dynamics of Interacting Bosons.” <i>Journal of Statistical Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s10955-020-02500-8\">https://doi.org/10.1007/s10955-020-02500-8</a>."},"date_created":"2020-02-23T09:45:51Z","abstract":[{"text":"In this paper, we introduce a novel method for deriving higher order corrections to the mean-field description of the dynamics of interacting bosons. More precisely, we consider the dynamics of N d-dimensional bosons for large N. The bosons initially form a Bose–Einstein condensate and interact with each other via a pair potential of the form (N−1)−1Ndβv(Nβ·)forβ∈[0,14d). We derive a sequence of N-body functions which approximate the true many-body dynamics in L2(RdN)-norm to arbitrary precision in powers of N−1. The approximating functions are constructed as Duhamel expansions of finite order in terms of the first quantised analogue of a Bogoliubov time evolution.","lang":"eng"}],"author":[{"orcid":"0000-0002-6854-1343","first_name":"Lea","id":"A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425","last_name":"Bossmann","full_name":"Bossmann, Lea"},{"first_name":"Nataša","full_name":"Pavlović, Nataša","last_name":"Pavlović"},{"full_name":"Pickl, Peter","last_name":"Pickl","first_name":"Peter"},{"last_name":"Soffer","full_name":"Soffer, Avy","first_name":"Avy"}],"day":"21","ddc":["510"],"doi":"10.1007/s10955-020-02500-8","scopus_import":"1","has_accepted_license":"1","department":[{"_id":"RoSe"}],"language":[{"iso":"eng"}],"article_type":"original","file_date_updated":"2020-11-20T09:26:46Z","volume":178,"oa_version":"Published Version","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"},{"call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"}],"ec_funded":1,"title":"Higher order corrections to the mean-field description of the dynamics of interacting bosons","date_updated":"2025-04-14T07:44:03Z","corr_author":"1","arxiv":1,"_id":"7508","date_published":"2020-02-21T00:00:00Z","external_id":{"isi":["000516342200001"],"arxiv":["1905.06164"]},"status":"public","file":[{"file_size":576726,"file_id":"8780","file_name":"2020_JournStatPhysics_Bossmann.pdf","relation":"main_file","date_created":"2020-11-20T09:26:46Z","date_updated":"2020-11-20T09:26:46Z","checksum":"643e230bf147e64d9cdb3f6cc573679d","success":1,"creator":"dernst","access_level":"open_access","content_type":"application/pdf"}],"article_processing_charge":"Yes (via OA deal)","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).\r\nL.B. gratefully acknowledges the support by the German Research Foundation (DFG) within the Research Training Group 1838 “Spectral Theory and Dynamics of Quantum Systems”, and wishes to thank Stefan Teufel, Sören Petrat and Marcello Porta for helpful discussions. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. N.P. gratefully acknowledges support from NSF grant DMS-1516228 and DMS-1840314. P.P.’s research was funded by DFG Grant no. PI 1114/3-1. Part of this work was done when N.P. and P.P. were visiting CCNU, Wuhan. N.P. and P.P. thank A.S. for his hospitality at CCNU.","oa":1,"publisher":"Springer Nature"}]