[{"_id":"7490","scopus_import":"1","type":"journal_article","article_type":"original","intvolume":"         9","oa_version":"Published Version","department":[{"_id":"JiFr"},{"_id":"GaTk"},{"_id":"EM-Fac"},{"_id":"SyCr"}],"publisher":"eLife Sciences Publications","date_updated":"2025-04-14T07:45:03Z","language":[{"iso":"eng"}],"month":"01","date_published":"2020-01-23T00:00:00Z","oa":1,"file_date_updated":"2020-07-14T12:47:59Z","isi":1,"status":"public","day":"23","ec_funded":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"project":[{"_id":"261099A6-B435-11E9-9278-68D0E5697425","grant_number":"742985","call_identifier":"H2020","name":"Tracing Evolution of Auxin Transport and Polarity in Plants"},{"call_identifier":"FWF","name":"Molecular mechanisms of endocytic cargo recognition in plants","_id":"26538374-B435-11E9-9278-68D0E5697425","grant_number":"I03630"}],"citation":{"ama":"Narasimhan M, Johnson AJ, Prizak R, et al. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. <i>eLife</i>. 2020;9. doi:<a href=\"https://doi.org/10.7554/eLife.52067\">10.7554/eLife.52067</a>","ista":"Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE, Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. eLife. 9, e52067.","ieee":"M. Narasimhan <i>et al.</i>, “Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants,” <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.","short":"M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020).","mla":"Narasimhan, Madhumitha, et al. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>, vol. 9, e52067, eLife Sciences Publications, 2020, doi:<a href=\"https://doi.org/10.7554/eLife.52067\">10.7554/eLife.52067</a>.","chicago":"Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann, Shutang Tan, Barbara E Casillas Perez, and Jiří Friml. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>. eLife Sciences Publications, 2020. <a href=\"https://doi.org/10.7554/eLife.52067\">https://doi.org/10.7554/eLife.52067</a>.","apa":"Narasimhan, M., Johnson, A. J., Prizak, R., Kaufmann, W., Tan, S., Casillas Perez, B. E., &#38; Friml, J. (2020). Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.52067\">https://doi.org/10.7554/eLife.52067</a>"},"pmid":1,"acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"Bio"},{"_id":"EM-Fac"}],"volume":9,"author":[{"full_name":"Narasimhan, Madhumitha","id":"44BF24D0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8600-0671","first_name":"Madhumitha","last_name":"Narasimhan"},{"id":"46A62C3A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2739-8843","full_name":"Johnson, Alexander J","first_name":"Alexander J","last_name":"Johnson"},{"last_name":"Prizak","first_name":"Roshan","id":"4456104E-F248-11E8-B48F-1D18A9856A87","full_name":"Prizak, Roshan"},{"first_name":"Walter","last_name":"Kaufmann","full_name":"Kaufmann, Walter","orcid":"0000-0001-9735-5315","id":"3F99E422-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Tan, Shutang","orcid":"0000-0002-0471-8285","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","last_name":"Tan","first_name":"Shutang"},{"full_name":"Casillas Perez, Barbara E","id":"351ED2AA-F248-11E8-B48F-1D18A9856A87","last_name":"Casillas Perez","first_name":"Barbara E"},{"first_name":"Jiří","last_name":"Friml","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","title":"Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants","abstract":[{"text":"In plants, clathrin mediated endocytosis (CME) represents the major route for cargo internalisation from the cell surface. It has been assumed to operate in an evolutionary conserved manner as in yeast and animals. Here we report characterisation of ultrastructure, dynamics and mechanisms of plant CME as allowed by our advancement in electron microscopy and quantitative live imaging techniques. Arabidopsis CME appears to follow the constant curvature model and the bona fide CME population generates vesicles of a predominantly hexagonal-basket type; larger and with faster kinetics than in other models. Contrary to the existing paradigm, actin is dispensable for CME events at the plasma membrane but plays a unique role in collecting endocytic vesicles, sorting of internalised cargos and directional endosome movement that itself actively promote CME events. Internalized vesicles display a strongly delayed and sequential uncoating. These unique features highlight the independent evolution of the plant CME mechanism during the autonomous rise of multicellularity in eukaryotes.","lang":"eng"}],"external_id":{"isi":["000514104100001"],"pmid":["31971511"]},"publication_status":"published","article_processing_charge":"No","publication":"eLife","publication_identifier":{"eissn":["2050-084X"]},"doi":"10.7554/eLife.52067","article_number":"e52067","year":"2020","date_created":"2020-02-16T23:00:50Z","ddc":["570","580"],"has_accepted_license":"1","file":[{"file_id":"7494","checksum":"2052daa4be5019534f3a42f200a09f32","relation":"main_file","access_level":"open_access","file_size":7247468,"date_updated":"2020-07-14T12:47:59Z","date_created":"2020-02-18T07:21:16Z","file_name":"2020_eLife_Narasimhan.pdf","content_type":"application/pdf","creator":"dernst"}],"quality_controlled":"1"},{"quality_controlled":"1","ddc":["580"],"main_file_link":[{"url":"https://doi.org/10.1111/jipb.12905","open_access":"1"}],"date_created":"2020-02-18T10:02:25Z","year":"2020","publication":"Journal of Integrative Plant Biology","publication_identifier":{"eissn":["1744-7909"],"issn":["1672-9072"]},"doi":"10.1111/jipb.12905","issue":"9","publication_status":"published","external_id":{"isi":["000515803000001"],"pmid":["31912615"]},"abstract":[{"lang":"eng","text":"Endophytic fungi can be beneficial to plant growth. However, the molecular mechanisms underlying colonization of Acremonium spp. remain unclear. In this study, a novel endophytic Acremonium strain was isolated from the buds of Panax notoginseng and named Acremonium sp. D212. The Acremonium sp. D212 could colonize the roots of P. notoginseng, enhance the resistance of P. notoginseng to root rot disease, and promote root growth and saponin biosynthesis in P. notoginseng. Acremonium sp. D212 could secrete indole‐3‐acetic acid (IAA) and jasmonic acid (JA), and inoculation with the fungus increased the endogenous levels of IAA and JA in P. notoginseng. Colonization of the Acremonium sp. D212 in the roots of the rice line Nipponbare was dependent on the concentration of methyl jasmonate (MeJA) (2 to 15 μM) and 1‐naphthalenacetic acid (NAA) (10 to 20 μM). Moreover, the roots of the JA signalling‐defective coi1‐18 mutant were colonized by Acremonium sp. D212 to a lesser degree than those of the wild‐type Nipponbare and miR393b‐overexpressing lines, and the colonization was rescued by MeJA but not by NAA. It suggests that the cross‐talk between JA signalling and the auxin biosynthetic pathway plays a crucial role in the colonization of Acremonium sp. D212 in host plants."}],"article_processing_charge":"No","page":"1433-1451","title":"Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid","volume":62,"author":[{"full_name":"Han, L","last_name":"Han","first_name":"L"},{"full_name":"Zhou, X","first_name":"X","last_name":"Zhou"},{"full_name":"Zhao, Y","last_name":"Zhao","first_name":"Y"},{"full_name":"Zhu, S","first_name":"S","last_name":"Zhu"},{"last_name":"Wu","first_name":"L","full_name":"Wu, L"},{"full_name":"He, Y","first_name":"Y","last_name":"He"},{"last_name":"Ping","first_name":"X","full_name":"Ping, X"},{"full_name":"Lu, X","first_name":"X","last_name":"Lu"},{"full_name":"Huang, W","first_name":"W","last_name":"Huang"},{"full_name":"Qian, J","last_name":"Qian","first_name":"J"},{"last_name":"Zhang","first_name":"L","full_name":"Zhang, L"},{"first_name":"X","last_name":"Jiang","full_name":"Jiang, X"},{"full_name":"Zhu, D","last_name":"Zhu","first_name":"D"},{"first_name":"C","last_name":"Luo","full_name":"Luo, C"},{"first_name":"S","last_name":"Li","full_name":"Li, S"},{"full_name":"Dong, Q","first_name":"Q","last_name":"Dong"},{"first_name":"Q","last_name":"Fu","full_name":"Fu, Q"},{"first_name":"K","last_name":"Deng","full_name":"Deng, K"},{"full_name":"Wang, X","last_name":"Wang","first_name":"X"},{"full_name":"Wang, L","first_name":"L","last_name":"Wang"},{"full_name":"Peng, S","last_name":"Peng","first_name":"S"},{"full_name":"Wu, J","last_name":"Wu","first_name":"J"},{"last_name":"Li","first_name":"W","full_name":"Li, W"},{"full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jiří"},{"last_name":"Zhu","first_name":"Y","full_name":"Zhu, Y"},{"full_name":"He, X","last_name":"He","first_name":"X"},{"full_name":"Du, Y","last_name":"Du","first_name":"Y"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"citation":{"mla":"Han, L., et al. “Colonization of Endophyte Acremonium Sp. D212 in Panax Notoginseng and Rice Mediated by Auxin and Jasmonic Acid.” <i>Journal of Integrative Plant Biology</i>, vol. 62, no. 9, Wiley, 2020, pp. 1433–51, doi:<a href=\"https://doi.org/10.1111/jipb.12905\">10.1111/jipb.12905</a>.","chicago":"Han, L, X Zhou, Y Zhao, S Zhu, L Wu, Y He, X Ping, et al. “Colonization of Endophyte Acremonium Sp. D212 in Panax Notoginseng and Rice Mediated by Auxin and Jasmonic Acid.” <i>Journal of Integrative Plant Biology</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/jipb.12905\">https://doi.org/10.1111/jipb.12905</a>.","apa":"Han, L., Zhou, X., Zhao, Y., Zhu, S., Wu, L., He, Y., … Du, Y. (2020). Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. <i>Journal of Integrative Plant Biology</i>. Wiley. <a href=\"https://doi.org/10.1111/jipb.12905\">https://doi.org/10.1111/jipb.12905</a>","ama":"Han L, Zhou X, Zhao Y, et al. Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. <i>Journal of Integrative Plant Biology</i>. 2020;62(9):1433-1451. doi:<a href=\"https://doi.org/10.1111/jipb.12905\">10.1111/jipb.12905</a>","ista":"Han L, Zhou X, Zhao Y, Zhu S, Wu L, He Y, Ping X, Lu X, Huang W, Qian J, Zhang L, Jiang X, Zhu D, Luo C, Li S, Dong Q, Fu Q, Deng K, Wang X, Wang L, Peng S, Wu J, Li W, Friml J, Zhu Y, He X, Du Y. 2020. Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. Journal of Integrative Plant Biology. 62(9), 1433–1451.","short":"L. Han, X. Zhou, Y. Zhao, S. Zhu, L. Wu, Y. He, X. Ping, X. Lu, W. Huang, J. Qian, L. Zhang, X. Jiang, D. Zhu, C. Luo, S. Li, Q. Dong, Q. Fu, K. Deng, X. Wang, L. Wang, S. Peng, J. Wu, W. Li, J. Friml, Y. Zhu, X. He, Y. Du, Journal of Integrative Plant Biology 62 (2020) 1433–1451.","ieee":"L. Han <i>et al.</i>, “Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid,” <i>Journal of Integrative Plant Biology</i>, vol. 62, no. 9. Wiley, pp. 1433–1451, 2020."},"day":"01","status":"public","oa":1,"isi":1,"date_updated":"2026-06-18T19:22:29Z","department":[{"_id":"JiFr"}],"publisher":"Wiley","date_published":"2020-09-01T00:00:00Z","language":[{"iso":"eng"}],"month":"09","acknowledgement":"We thank Professor Jianqiang Wu (Kunming Institute of Botany, Chinese Academy of Sciences) for providing generous support with the IAA and JA measurements. We thank Professor Guohua Xu (Nanjing Agricultural University) for generously providing the Nipponbare rice expressing DR5::GUS. We thank Professor Muyuan Zhu (Zhejiang University) for generously providing a rice line expressing 35S::miR393b. We thank Professor Yinong Yang (Pennsylvania State University) for generously providing the rice line coi1-18. This work was supported by grants from the National Natural Science Foundation of China (31660501, 31460453, 31860064 and 31470382), the Major Special Program for Scientific Research, Education Department of Yunnan Province (ZD2015005), the Project sponsored by SRF for ROCS, SEM ([2013] 1792), the Major Science and Technique Programs in Yunnan Province (2016ZF001), the Key Projects of the Applied Basic Research Plan of Yunnan Province (2017FA018), the National Key R&D Program of China (2018YFD0201100) and the China Agriculture Research System (CARS-21).","type":"journal_article","oa_version":"Published Version","intvolume":"        62","article_type":"original","scopus_import":"1","_id":"7497"},{"date_published":"2020-02-24T00:00:00Z","language":[{"iso":"eng"}],"month":"02","date_updated":"2025-04-15T06:26:13Z","department":[{"_id":"ToHe"}],"arxiv":1,"publisher":"IOS Press","isi":1,"file_date_updated":"2020-09-21T07:12:32Z","oa":1,"scopus_import":"1","_id":"7505","oa_version":"Published Version","intvolume":"       325","acknowledgement":"We thank Christoph Lampert and Nikolaus Mayer for fruitful discussions. This research was supported in part by the Austrian Science Fund (FWF) under grants S11402-N23 (RiSE/SHiNE) and Z211-N23 (Wittgenstein Award) and the European Union’s Horizon 2020 research and innovation programme under the Marie SkłodowskaCurie grant agreement No. 754411.","type":"conference","citation":{"mla":"Henzinger, Thomas A., et al. “Outside the Box: Abstraction-Based Monitoring of Neural Networks.” <i>24th European Conference on Artificial Intelligence</i>, vol. 325, IOS Press, 2020, pp. 2433–40, doi:<a href=\"https://doi.org/10.3233/FAIA200375\">10.3233/FAIA200375</a>.","apa":"Henzinger, T. A., Lukina, A., &#38; Schilling, C. (2020). Outside the box: Abstraction-based monitoring of neural networks. In <i>24th European Conference on Artificial Intelligence</i> (Vol. 325, pp. 2433–2440). Santiago de Compostela, Spain: IOS Press. <a href=\"https://doi.org/10.3233/FAIA200375\">https://doi.org/10.3233/FAIA200375</a>","chicago":"Henzinger, Thomas A, Anna Lukina, and Christian Schilling. “Outside the Box: Abstraction-Based Monitoring of Neural Networks.” In <i>24th European Conference on Artificial Intelligence</i>, 325:2433–40. IOS Press, 2020. <a href=\"https://doi.org/10.3233/FAIA200375\">https://doi.org/10.3233/FAIA200375</a>.","ama":"Henzinger TA, Lukina A, Schilling C. Outside the box: Abstraction-based monitoring of neural networks. In: <i>24th European Conference on Artificial Intelligence</i>. Vol 325. IOS Press; 2020:2433-2440. doi:<a href=\"https://doi.org/10.3233/FAIA200375\">10.3233/FAIA200375</a>","ista":"Henzinger TA, Lukina A, Schilling C. 2020. Outside the box: Abstraction-based monitoring of neural networks. 24th European Conference on Artificial Intelligence. ECAI: European Conference on Artificial Intelligence, Frontiers in Artificial Intelligence and Applications, vol. 325, 2433–2440.","short":"T.A. Henzinger, A. Lukina, C. Schilling, in:, 24th European Conference on Artificial Intelligence, IOS Press, 2020, pp. 2433–2440.","ieee":"T. A. Henzinger, A. Lukina, and C. Schilling, “Outside the box: Abstraction-based monitoring of neural networks,” in <i>24th European Conference on Artificial Intelligence</i>, Santiago de Compostela, Spain, 2020, vol. 325, pp. 2433–2440."},"project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering","call_identifier":"FWF"},{"name":"Formal methods for the design and analysis of complex systems","call_identifier":"FWF","grant_number":"Z211","_id":"25F42A32-B435-11E9-9278-68D0E5697425"}],"alternative_title":["Frontiers in Artificial Intelligence and Applications"],"status":"public","day":"24","tmp":{"short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode"},"ec_funded":1,"title":"Outside the box: Abstraction-based monitoring of neural networks","article_processing_charge":"No","page":"2433-2440","external_id":{"isi":["000650971303002"],"arxiv":["1911.09032"]},"publication_status":"published","abstract":[{"lang":"eng","text":"Neural networks have demonstrated unmatched performance in a range of classification tasks. Despite numerous efforts of the research community, novelty detection remains one of the significant limitations of neural networks. The ability to identify previously unseen inputs as novel is crucial for our understanding of the decisions made by neural networks. At runtime, inputs not falling into any of the categories learned during training cannot be classified correctly by the neural network. Existing approaches treat the neural network as a black box and try to detect novel inputs based on the confidence of the output predictions. However, neural networks are not trained to reduce their confidence for novel inputs, which limits the effectiveness of these approaches. We propose a framework to monitor a neural network by observing the hidden layers. We employ a common abstraction from program analysis - boxes - to identify novel behaviors in the monitored layers, i.e., inputs that cause behaviors outside the box. For each neuron, the boxes range over the values seen in training. The framework is efficient and flexible to achieve a desired trade-off between raising false warnings and detecting novel inputs. We illustrate the performance and the robustness to variability in the unknown classes on popular image-classification benchmarks."}],"author":[{"first_name":"Thomas A","last_name":"Henzinger","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724"},{"id":"CBA4D1A8-0FE8-11E9-BDE6-07BFE5697425","full_name":"Lukina, Anna","first_name":"Anna","last_name":"Lukina"},{"orcid":"0000-0003-3658-1065","id":"3A2F4DCE-F248-11E8-B48F-1D18A9856A87","full_name":"Schilling, Christian","first_name":"Christian","last_name":"Schilling"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":325,"has_accepted_license":"1","conference":{"location":"Santiago de Compostela, Spain","end_date":"2020-09-08","start_date":"2020-08-29","name":"ECAI: European Conference on Artificial Intelligence"},"ddc":["000"],"corr_author":"1","file":[{"file_size":1692214,"date_updated":"2020-09-21T07:12:32Z","access_level":"open_access","relation":"main_file","checksum":"80642fa0b6cd7da95dcd87d63789ad5e","file_id":"8540","success":1,"creator":"dernst","content_type":"application/pdf","file_name":"2020_ECAI_Henzinger.pdf","date_created":"2020-09-21T07:12:32Z"}],"quality_controlled":"1","doi":"10.3233/FAIA200375","publication":"24th European Conference on Artificial Intelligence","date_created":"2020-02-21T16:44:03Z","year":"2020"},{"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).\r\nL.B. gratefully acknowledges the support by the German Research Foundation (DFG) within the Research Training Group 1838 “Spectral Theory and Dynamics of Quantum Systems”, and wishes to thank Stefan Teufel, Sören Petrat and Marcello Porta for helpful discussions. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. N.P. gratefully acknowledges support from NSF grant DMS-1516228 and DMS-1840314. P.P.’s research was funded by DFG Grant no. PI 1114/3-1. Part of this work was done when N.P. and P.P. were visiting CCNU, Wuhan. N.P. and P.P. thank A.S. for his hospitality at CCNU.","type":"journal_article","intvolume":"       178","oa_version":"Published Version","article_type":"original","scopus_import":"1","_id":"7508","file_date_updated":"2020-11-20T09:26:46Z","oa":1,"isi":1,"date_updated":"2025-04-14T07:44:03Z","publisher":"Springer Nature","arxiv":1,"department":[{"_id":"RoSe"}],"date_published":"2020-02-21T00:00:00Z","language":[{"iso":"eng"}],"month":"02","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ec_funded":1,"day":"21","status":"public","project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"},{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"citation":{"ieee":"L. Bossmann, N. Pavlović, P. Pickl, and A. Soffer, “Higher order corrections to the mean-field description of the dynamics of interacting bosons,” <i>Journal of Statistical Physics</i>, vol. 178. Springer Nature, pp. 1362–1396, 2020.","short":"L. Bossmann, N. Pavlović, P. Pickl, A. Soffer, Journal of Statistical Physics 178 (2020) 1362–1396.","ama":"Bossmann L, Pavlović N, Pickl P, Soffer A. Higher order corrections to the mean-field description of the dynamics of interacting bosons. <i>Journal of Statistical Physics</i>. 2020;178:1362-1396. doi:<a href=\"https://doi.org/10.1007/s10955-020-02500-8\">10.1007/s10955-020-02500-8</a>","ista":"Bossmann L, Pavlović N, Pickl P, Soffer A. 2020. Higher order corrections to the mean-field description of the dynamics of interacting bosons. Journal of Statistical Physics. 178, 1362–1396.","chicago":"Bossmann, Lea, Nataša Pavlović, Peter Pickl, and Avy Soffer. “Higher Order Corrections to the Mean-Field Description of the Dynamics of Interacting Bosons.” <i>Journal of Statistical Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s10955-020-02500-8\">https://doi.org/10.1007/s10955-020-02500-8</a>.","apa":"Bossmann, L., Pavlović, N., Pickl, P., &#38; Soffer, A. (2020). Higher order corrections to the mean-field description of the dynamics of interacting bosons. <i>Journal of Statistical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10955-020-02500-8\">https://doi.org/10.1007/s10955-020-02500-8</a>","mla":"Bossmann, Lea, et al. “Higher Order Corrections to the Mean-Field Description of the Dynamics of Interacting Bosons.” <i>Journal of Statistical Physics</i>, vol. 178, Springer Nature, 2020, pp. 1362–96, doi:<a href=\"https://doi.org/10.1007/s10955-020-02500-8\">10.1007/s10955-020-02500-8</a>."},"volume":178,"author":[{"full_name":"Bossmann, Lea","orcid":"0000-0002-6854-1343","id":"A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425","last_name":"Bossmann","first_name":"Lea"},{"first_name":"Nataša","last_name":"Pavlović","full_name":"Pavlović, Nataša"},{"first_name":"Peter","last_name":"Pickl","full_name":"Pickl, Peter"},{"first_name":"Avy","last_name":"Soffer","full_name":"Soffer, Avy"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","external_id":{"arxiv":["1905.06164"],"isi":["000516342200001"]},"abstract":[{"lang":"eng","text":"In this paper, we introduce a novel method for deriving higher order corrections to the mean-field description of the dynamics of interacting bosons. More precisely, we consider the dynamics of N d-dimensional bosons for large N. The bosons initially form a Bose–Einstein condensate and interact with each other via a pair potential of the form (N−1)−1Ndβv(Nβ·)forβ∈[0,14d). We derive a sequence of N-body functions which approximate the true many-body dynamics in L2(RdN)-norm to arbitrary precision in powers of N−1. The approximating functions are constructed as Duhamel expansions of finite order in terms of the first quantised analogue of a Bogoliubov time evolution."}],"article_processing_charge":"Yes (via OA deal)","page":"1362-1396","title":"Higher order corrections to the mean-field description of the dynamics of interacting bosons","date_created":"2020-02-23T09:45:51Z","year":"2020","publication":"Journal of Statistical Physics","doi":"10.1007/s10955-020-02500-8","publication_identifier":{"issn":["0022-4715"],"eissn":["1572-9613"]},"file":[{"file_size":576726,"date_updated":"2020-11-20T09:26:46Z","relation":"main_file","checksum":"643e230bf147e64d9cdb3f6cc573679d","access_level":"open_access","file_id":"8780","creator":"dernst","success":1,"content_type":"application/pdf","file_name":"2020_JournStatPhysics_Bossmann.pdf","date_created":"2020-11-20T09:26:46Z"}],"quality_controlled":"1","corr_author":"1","ddc":["510"],"has_accepted_license":"1"},{"acknowledgement":"The author would like to thank Quanhua Xu, Adam Skalski, Ke Li and Zhi Yin for their valuable comments. He also would like to thank the anonymous referees for pointing out some errors in an earlier version of this paper and for helpful comments and suggestions that make this paper better. The research was partially supported by the NCN (National Centre of Science) grant 2014/14/E/ST1/00525, the French project ISITE-BFC (contract ANR-15-IDEX-03), NSFC No. 11826012, and the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 754411.","type":"journal_article","oa_version":"Preprint","intvolume":"       365","article_type":"original","_id":"7509","oa":1,"isi":1,"date_updated":"2025-04-14T07:44:03Z","department":[{"_id":"JaMa"}],"arxiv":1,"publisher":"Elsevier","date_published":"2020-05-13T00:00:00Z","month":"05","language":[{"iso":"eng"}],"ec_funded":1,"status":"public","day":"13","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"citation":{"apa":"Zhang, H. (2020). From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture. <i>Advances in Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.aim.2020.107053\">https://doi.org/10.1016/j.aim.2020.107053</a>","chicago":"Zhang, Haonan. “From Wigner-Yanase-Dyson Conjecture to Carlen-Frank-Lieb Conjecture.” <i>Advances in Mathematics</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.aim.2020.107053\">https://doi.org/10.1016/j.aim.2020.107053</a>.","mla":"Zhang, Haonan. “From Wigner-Yanase-Dyson Conjecture to Carlen-Frank-Lieb Conjecture.” <i>Advances in Mathematics</i>, vol. 365, 107053, Elsevier, 2020, doi:<a href=\"https://doi.org/10.1016/j.aim.2020.107053\">10.1016/j.aim.2020.107053</a>.","ieee":"H. Zhang, “From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture,” <i>Advances in Mathematics</i>, vol. 365. Elsevier, 2020.","short":"H. Zhang, Advances in Mathematics 365 (2020).","ista":"Zhang H. 2020. From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture. Advances in Mathematics. 365, 107053.","ama":"Zhang H. From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture. <i>Advances in Mathematics</i>. 2020;365. doi:<a href=\"https://doi.org/10.1016/j.aim.2020.107053\">10.1016/j.aim.2020.107053</a>"},"volume":365,"author":[{"first_name":"Haonan","last_name":"Zhang","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425","full_name":"Zhang, Haonan"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","external_id":{"arxiv":["1811.01205"],"isi":["000522798000001"]},"abstract":[{"text":"In this paper we study the joint convexity/concavity of the trace functions Ψp,q,s(A,B)=Tr(Bq2K∗ApKBq2)s,  p,q,s∈R,\r\nwhere A and B are positive definite matrices and K is any fixed invertible matrix. We will give full range of (p,q,s)∈R3 for Ψp,q,s to be jointly convex/concave for all K. As a consequence, we confirm a conjecture of Carlen, Frank and Lieb. In particular, we confirm a weaker conjecture of Audenaert and Datta and obtain the full range of (α,z) for α-z Rényi relative entropies to be monotone under completely positive trace preserving maps. We also give simpler proofs of many known results, including the concavity of Ψp,0,1/p for 0<p<1 which was first proved by Epstein using complex analysis. The key is to reduce the problem to the joint convexity/concavity of the trace functions Ψp,1−p,1(A,B)=TrK∗ApKB1−p,  −1≤p≤1, using a variational method. ","lang":"eng"}],"article_processing_charge":"No","title":"From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture","article_number":"107053","date_created":"2020-02-23T21:43:50Z","year":"2020","publication":"Advances in Mathematics","doi":"10.1016/j.aim.2020.107053","quality_controlled":"1","ddc":["515"],"main_file_link":[{"url":"https://arxiv.org/abs/1811.01205","open_access":"1"}]},{"status":"public","day":"13","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"citation":{"mla":"Turoňová, Beata, et al. “Benchmarking Tomographic Acquisition Schemes for High-Resolution Structural Biology.” <i>Nature Communications</i>, vol. 11, 876, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s41467-020-14535-2\">10.1038/s41467-020-14535-2</a>.","chicago":"Turoňová, Beata, Wim J.H. Hagen, Martin Obr, Shyamal Mosalaganti, J. Wouter Beugelink, Christian E. Zimmerli, Hans Georg Kräusslich, and Martin Beck. “Benchmarking Tomographic Acquisition Schemes for High-Resolution Structural Biology.” <i>Nature Communications</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41467-020-14535-2\">https://doi.org/10.1038/s41467-020-14535-2</a>.","apa":"Turoňová, B., Hagen, W. J. H., Obr, M., Mosalaganti, S., Beugelink, J. W., Zimmerli, C. E., … Beck, M. (2020). Benchmarking tomographic acquisition schemes for high-resolution structural biology. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-020-14535-2\">https://doi.org/10.1038/s41467-020-14535-2</a>","ama":"Turoňová B, Hagen WJH, Obr M, et al. Benchmarking tomographic acquisition schemes for high-resolution structural biology. <i>Nature Communications</i>. 2020;11. doi:<a href=\"https://doi.org/10.1038/s41467-020-14535-2\">10.1038/s41467-020-14535-2</a>","ista":"Turoňová B, Hagen WJH, Obr M, Mosalaganti S, Beugelink JW, Zimmerli CE, Kräusslich HG, Beck M. 2020. Benchmarking tomographic acquisition schemes for high-resolution structural biology. Nature Communications. 11, 876.","short":"B. Turoňová, W.J.H. Hagen, M. Obr, S. Mosalaganti, J.W. Beugelink, C.E. Zimmerli, H.G. Kräusslich, M. Beck, Nature Communications 11 (2020).","ieee":"B. Turoňová <i>et al.</i>, “Benchmarking tomographic acquisition schemes for high-resolution structural biology,” <i>Nature Communications</i>, vol. 11. Springer Nature, 2020."},"scopus_import":"1","_id":"7511","oa_version":"Published Version","intvolume":"        11","article_type":"original","type":"journal_article","date_published":"2020-02-13T00:00:00Z","month":"02","language":[{"iso":"eng"}],"date_updated":"2026-04-03T09:27:26Z","publisher":"Springer Nature","department":[{"_id":"FlSc"}],"isi":1,"file_date_updated":"2020-07-14T12:47:59Z","oa":1,"doi":"10.1038/s41467-020-14535-2","publication_identifier":{"eissn":["2041-1723"]},"publication":"Nature Communications","date_created":"2020-02-23T23:00:35Z","year":"2020","article_number":"876","has_accepted_license":"1","ddc":["570"],"quality_controlled":"1","file":[{"date_created":"2020-02-24T14:00:54Z","content_type":"application/pdf","file_name":"2020_NatureComm_Turonova.pdf","creator":"dernst","file_id":"7517","access_level":"open_access","relation":"main_file","checksum":"2c8d10475e1b0d397500760e28bdf561","file_size":2027529,"date_updated":"2020-07-14T12:47:59Z"}],"pmid":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","author":[{"last_name":"Turoňová","first_name":"Beata","full_name":"Turoňová, Beata"},{"first_name":"Wim J.H.","last_name":"Hagen","full_name":"Hagen, Wim J.H."},{"full_name":"Obr, Martin","orcid":"0000-0003-1756-6564","id":"4741CA5A-F248-11E8-B48F-1D18A9856A87","last_name":"Obr","first_name":"Martin"},{"first_name":"Shyamal","last_name":"Mosalaganti","full_name":"Mosalaganti, Shyamal"},{"last_name":"Beugelink","first_name":"J. Wouter","full_name":"Beugelink, J. Wouter"},{"last_name":"Zimmerli","first_name":"Christian E.","full_name":"Zimmerli, Christian E."},{"full_name":"Kräusslich, Hans Georg","last_name":"Kräusslich","first_name":"Hans Georg"},{"first_name":"Martin","last_name":"Beck","full_name":"Beck, Martin"}],"volume":11,"title":"Benchmarking tomographic acquisition schemes for high-resolution structural biology","article_processing_charge":"No","publication_status":"published","external_id":{"pmid":["32054835"],"isi":["000514928000017"]},"abstract":[{"text":"Cryo electron tomography with subsequent subtomogram averaging is a powerful technique to structurally analyze macromolecular complexes in their native context. Although close to atomic resolution in principle can be obtained, it is not clear how individual experimental parameters contribute to the attainable resolution. Here, we have used immature HIV-1 lattice as a benchmarking sample to optimize the attainable resolution for subtomogram averaging. We systematically tested various experimental parameters such as the order of projections, different angular increments and the use of the Volta phase plate. We find that although any of the prominently used acquisition schemes is sufficient to obtain subnanometer resolution, dose-symmetric acquisition provides considerably better outcome. We discuss our findings in order to provide guidance for data acquisition. Our data is publicly available and might be used to further develop processing routines.","lang":"eng"}]},{"day":"01","status":"public","ec_funded":1,"project":[{"grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7"}],"citation":{"mla":"Erdös, László, et al. “Local Laws for Polynomials of Wigner Matrices.” <i>Journal of Functional Analysis</i>, vol. 278, no. 12, 108507, Elsevier, 2020, doi:<a href=\"https://doi.org/10.1016/j.jfa.2020.108507\">10.1016/j.jfa.2020.108507</a>.","apa":"Erdös, L., Krüger, T. H., &#38; Nemish, Y. (2020). Local laws for polynomials of Wigner matrices. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2020.108507\">https://doi.org/10.1016/j.jfa.2020.108507</a>","chicago":"Erdös, László, Torben H Krüger, and Yuriy Nemish. “Local Laws for Polynomials of Wigner Matrices.” <i>Journal of Functional Analysis</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.jfa.2020.108507\">https://doi.org/10.1016/j.jfa.2020.108507</a>.","ama":"Erdös L, Krüger TH, Nemish Y. Local laws for polynomials of Wigner matrices. <i>Journal of Functional Analysis</i>. 2020;278(12). doi:<a href=\"https://doi.org/10.1016/j.jfa.2020.108507\">10.1016/j.jfa.2020.108507</a>","ista":"Erdös L, Krüger TH, Nemish Y. 2020. Local laws for polynomials of Wigner matrices. Journal of Functional Analysis. 278(12), 108507.","ieee":"L. Erdös, T. H. Krüger, and Y. Nemish, “Local laws for polynomials of Wigner matrices,” <i>Journal of Functional Analysis</i>, vol. 278, no. 12. Elsevier, 2020.","short":"L. Erdös, T.H. Krüger, Y. Nemish, Journal of Functional Analysis 278 (2020)."},"_id":"7512","scopus_import":"1","type":"journal_article","acknowledgement":"The authors are grateful to Oskari Ajanki for his invaluable help at the initial stage of this project, to Serban Belinschi for useful discussions, to Alexander Tikhomirov for calling our attention to the model example in Section 6.2 and to the anonymous referee for suggesting to simplify certain proofs. Erdös: Partially funded by ERC Advanced Grant RANMAT No. 338804\r\n","article_type":"original","intvolume":"       278","oa_version":"Preprint","department":[{"_id":"LaEr"}],"arxiv":1,"publisher":"Elsevier","date_updated":"2025-07-10T11:54:43Z","language":[{"iso":"eng"}],"month":"07","date_published":"2020-07-01T00:00:00Z","oa":1,"isi":1,"publication":"Journal of Functional Analysis","issue":"12","doi":"10.1016/j.jfa.2020.108507","publication_identifier":{"eissn":["1096-0783"],"issn":["0022-1236"]},"article_number":"108507","year":"2020","date_created":"2020-02-23T23:00:36Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1804.11340"}],"quality_controlled":"1","volume":278,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Erdös","first_name":"László","full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603"},{"last_name":"Krüger","first_name":"Torben H","orcid":"0000-0002-4821-3297","id":"3020C786-F248-11E8-B48F-1D18A9856A87","full_name":"Krüger, Torben H"},{"first_name":"Yuriy","last_name":"Nemish","orcid":"0000-0002-7327-856X","id":"4D902E6A-F248-11E8-B48F-1D18A9856A87","full_name":"Nemish, Yuriy"}],"title":"Local laws for polynomials of Wigner matrices","abstract":[{"lang":"eng","text":"We consider general self-adjoint polynomials in several independent random matrices whose entries are centered and have the same variance. We show that under certain conditions the local law holds up to the optimal scale, i.e., the eigenvalue density on scales just above the eigenvalue spacing follows the global density of states which is determined by free probability theory. We prove that these conditions hold for general homogeneous polynomials of degree two and for symmetrized products of independent matrices with i.i.d. entries, thus establishing the optimal bulk local law for these classes of ensembles. In particular, we generalize a similar result of Anderson for anticommutator. For more general polynomials our conditions are effectively checkable numerically."}],"publication_status":"published","external_id":{"isi":["000522798900001"],"arxiv":["1804.11340"]},"article_processing_charge":"No"},{"project":[{"name":"Analysis of quantum many-body systems","call_identifier":"H2020","grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"}],"citation":{"ista":"Mayer S. 2020. The free energy of a dilute two-dimensional Bose gas. Institute of Science and Technology Austria.","ama":"Mayer S. The free energy of a dilute two-dimensional Bose gas. 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7514\">10.15479/AT:ISTA:7514</a>","ieee":"S. Mayer, “The free energy of a dilute two-dimensional Bose gas,” Institute of Science and Technology Austria, 2020.","short":"S. Mayer, The Free Energy of a Dilute Two-Dimensional Bose Gas, Institute of Science and Technology Austria, 2020.","mla":"Mayer, Simon. <i>The Free Energy of a Dilute Two-Dimensional Bose Gas</i>. Institute of Science and Technology Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7514\">10.15479/AT:ISTA:7514</a>.","apa":"Mayer, S. (2020). <i>The free energy of a dilute two-dimensional Bose gas</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:7514\">https://doi.org/10.15479/AT:ISTA:7514</a>","chicago":"Mayer, Simon. “The Free Energy of a Dilute Two-Dimensional Bose Gas.” Institute of Science and Technology Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:7514\">https://doi.org/10.15479/AT:ISTA:7514</a>."},"ec_funded":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"day":"24","status":"public","alternative_title":["ISTA Thesis"],"oa":1,"file_date_updated":"2020-07-14T12:47:59Z","publisher":"Institute of Science and Technology Austria","department":[{"_id":"RoSe"},{"_id":"GradSch"}],"date_updated":"2026-04-08T07:25:40Z","month":"02","language":[{"iso":"eng"}],"date_published":"2020-02-24T00:00:00Z","type":"dissertation","oa_version":"Published Version","_id":"7514","file":[{"file_id":"7515","access_level":"open_access","checksum":"b4de7579ddc1dbdd44ff3f17c48395f6","relation":"main_file","file_size":1563429,"date_updated":"2020-07-14T12:47:59Z","date_created":"2020-02-24T09:15:06Z","content_type":"application/pdf","file_name":"thesis.pdf","creator":"dernst"},{"creator":"dernst","date_created":"2020-02-24T09:15:16Z","content_type":"application/x-zip-compressed","file_name":"thesis_source.zip","access_level":"closed","checksum":"ad7425867b52d7d9e72296e87bc9cb67","relation":"source_file","file_size":2028038,"date_updated":"2020-07-14T12:47:59Z","file_id":"7516"}],"corr_author":"1","ddc":["510"],"has_accepted_license":"1","year":"2020","date_created":"2020-02-24T09:17:27Z","publication_identifier":{"issn":["2663-337X"]},"doi":"10.15479/AT:ISTA:7514","abstract":[{"text":"We study the interacting homogeneous Bose gas in two spatial dimensions in the thermodynamic limit at fixed density. We shall be concerned with some mathematical aspects of this complicated problem in many-body quantum mechanics. More specifically, we consider the dilute limit where the scattering length of the interaction potential, which is a measure for the effective range of the potential, is small compared to the average distance between the particles. We are interested in a setting with positive (i.e., non-zero) temperature. After giving a survey of the relevant literature in the field, we provide some facts and examples to set expectations for the two-dimensional system. The crucial difference to the three-dimensional system is that there is no Bose–Einstein condensate at positive temperature due to the Hohenberg–Mermin–Wagner theorem. However, it turns out that an asymptotic formula for the free energy holds similarly to the three-dimensional case.\r\nWe motivate this formula by considering a toy model with δ interaction potential. By restricting this model Hamiltonian to certain trial states with a quasi-condensate we obtain an upper bound for the free energy that still has the quasi-condensate fraction as a free parameter. When minimizing over the quasi-condensate fraction, we obtain the Berezinskii–Kosterlitz–Thouless critical temperature for superfluidity, which plays an important role in our rigorous contribution. The mathematically rigorous result that we prove concerns the specific free energy in the dilute limit. We give upper and lower bounds on the free energy in terms of the free energy of the non-interacting system and a correction term coming from the interaction. Both bounds match and thus we obtain the leading term of an asymptotic approximation in the dilute limit, provided the thermal wavelength of the particles is of the same order (or larger) than the average distance between the particles. The remarkable feature of this result is its generality: the correction term depends on the interaction potential only through its scattering length and it holds for all nonnegative interaction potentials with finite scattering length that are measurable. In particular, this allows to model an interaction of hard disks.","lang":"eng"}],"publication_status":"published","page":"148","article_processing_charge":"No","degree_awarded":"PhD","title":"The free energy of a dilute two-dimensional Bose gas","supervisor":[{"orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert","last_name":"Seiringer","first_name":"Robert"}],"OA_place":"publisher","author":[{"id":"30C4630A-F248-11E8-B48F-1D18A9856A87","full_name":"Mayer, Simon","last_name":"Mayer","first_name":"Simon"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","related_material":{"record":[{"relation":"part_of_dissertation","id":"7524","status":"public"}]}},{"article_processing_charge":"No","publication_status":"published","abstract":[{"text":"In developing technologies based on superconducting quantum circuits, the need to control and route heating is a significant challenge in the experimental realisation and operation of these devices. One of the more ubiquitous devices in the current quantum computing toolbox is the transmon-type superconducting quantum bit, embedded in a resonator-based architecture. In the study of heat transport in superconducting circuits, a versatile and sensitive thermometer is based on studying the tunnelling characteristics of superconducting probes weakly coupled to a normal-metal island. Here we show that by integrating superconducting quantum bit coupled to two superconducting resonators at different frequencies, each resonator terminated (and thermally populated) by such a mesoscopic thin film metal island, one can experimentally observe magnetic flux-tunable photonic heat rectification between 0 and 10%.","lang":"eng"}],"title":"Heat rectification via a superconducting artificial atom","author":[{"id":"5479D234-2D30-11EA-89CC-40953DDC885E","orcid":"0000-0002-0672-9295","full_name":"Senior, Jorden L","first_name":"Jorden L","last_name":"Senior"},{"full_name":"Gubaydullin, Azat","first_name":"Azat","last_name":"Gubaydullin"},{"last_name":"Karimi","first_name":"Bayan","full_name":"Karimi, Bayan"},{"last_name":"Peltonen","first_name":"Joonas T.","full_name":"Peltonen, Joonas T."},{"last_name":"Ankerhold","first_name":"Joachim","full_name":"Ankerhold, Joachim"},{"full_name":"Pekola, Jukka P.","last_name":"Pekola","first_name":"Jukka P."}],"user_id":"0043cee0-e5fc-11ee-9736-f83bc23afbf0","extern":"1","volume":3,"OA_place":"publisher","file":[{"date_updated":"2020-07-14T12:48:00Z","file_size":1590721,"access_level":"open_access","checksum":"59255f51d9f113c40e3047e9ac83d367","relation":"main_file","file_id":"7559","creator":"dernst","content_type":"application/pdf","file_name":"s42005-020-0307-5.pdf","date_created":"2020-03-03T10:41:13Z"},{"date_created":"2020-03-03T10:41:13Z","file_name":"42005_2020_307_MOESM1_ESM.pdf","content_type":"application/pdf","creator":"dernst","file_id":"7560","access_level":"open_access","relation":"main_file","checksum":"8325ae7b3c869d9aa6ed84823da4000a","date_updated":"2020-07-14T12:48:00Z","file_size":1007249}],"quality_controlled":"1","has_accepted_license":"1","ddc":["536"],"date_created":"2020-02-26T13:51:14Z","year":"2020","article_number":"40","publication_identifier":{"issn":["2399-3650"]},"doi":"10.1038/s42005-020-0307-5","issue":"1","publication":"Communications Physics","DOAJ_listed":"1","file_date_updated":"2020-07-14T12:48:00Z","oa":1,"date_published":"2020-02-25T00:00:00Z","month":"02","language":[{"iso":"eng"}],"date_updated":"2024-10-15T12:36:24Z","publisher":"Springer Nature","oa_version":"Published Version","intvolume":"         3","article_type":"original","type":"journal_article","_id":"7530","citation":{"short":"J.L. Senior, A. Gubaydullin, B. Karimi, J.T. Peltonen, J. Ankerhold, J.P. Pekola, Communications Physics 3 (2020).","ieee":"J. L. Senior, A. Gubaydullin, B. Karimi, J. T. Peltonen, J. Ankerhold, and J. P. Pekola, “Heat rectification via a superconducting artificial atom,” <i>Communications Physics</i>, vol. 3, no. 1. Springer Nature, 2020.","ama":"Senior JL, Gubaydullin A, Karimi B, Peltonen JT, Ankerhold J, Pekola JP. Heat rectification via a superconducting artificial atom. <i>Communications Physics</i>. 2020;3(1). doi:<a href=\"https://doi.org/10.1038/s42005-020-0307-5\">10.1038/s42005-020-0307-5</a>","ista":"Senior JL, Gubaydullin A, Karimi B, Peltonen JT, Ankerhold J, Pekola JP. 2020. Heat rectification via a superconducting artificial atom. Communications Physics. 3(1), 40.","apa":"Senior, J. L., Gubaydullin, A., Karimi, B., Peltonen, J. T., Ankerhold, J., &#38; Pekola, J. P. (2020). Heat rectification via a superconducting artificial atom. <i>Communications Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s42005-020-0307-5\">https://doi.org/10.1038/s42005-020-0307-5</a>","chicago":"Senior, Jorden L, Azat Gubaydullin, Bayan Karimi, Joonas T. Peltonen, Joachim Ankerhold, and Jukka P. Pekola. “Heat Rectification via a Superconducting Artificial Atom.” <i>Communications Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s42005-020-0307-5\">https://doi.org/10.1038/s42005-020-0307-5</a>.","mla":"Senior, Jorden L., et al. “Heat Rectification via a Superconducting Artificial Atom.” <i>Communications Physics</i>, vol. 3, no. 1, 40, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s42005-020-0307-5\">10.1038/s42005-020-0307-5</a>."},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"OA_type":"gold","day":"25","status":"public"},{"volume":5,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"last_name":"Budanur","first_name":"Nazmi B","full_name":"Budanur, Nazmi B","id":"3EA1010E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0423-5010"},{"last_name":"Marensi","first_name":"Elena","full_name":"Marensi, Elena"},{"last_name":"Willis","first_name":"Ashley P.","full_name":"Willis, Ashley P."},{"first_name":"Björn","last_name":"Hof","orcid":"0000-0003-2057-2754","id":"3A374330-F248-11E8-B48F-1D18A9856A87","full_name":"Hof, Björn"}],"publication_status":"published","external_id":{"isi":["000515065100001"],"arxiv":["1912.09270"]},"abstract":[{"lang":"eng","text":"In the past two decades, our understanding of the transition to turbulence in shear flows with linearly stable laminar solutions has greatly improved. Regarding the susceptibility of the laminar flow, two concepts have been particularly useful: the edge states and the minimal seeds. In this nonlinear picture of the transition, the basin boundary of turbulence is set by the edge state's stable manifold and this manifold comes closest in energy to the laminar equilibrium at the minimal seed. We begin this paper by presenting numerical experiments in which three-dimensional perturbations are too energetic to trigger turbulence in pipe flow but they do lead to turbulence when their amplitude is reduced. We show that this seemingly counterintuitive observation is in fact consistent with the fully nonlinear description of the transition mediated by the edge state. In order to understand the physical mechanisms behind this process, we measure the turbulent kinetic energy production and dissipation rates as a function of the radial coordinate. Our main observation is that the transition to turbulence relies on the energy amplification away from the wall, as opposed to the turbulence itself, whose energy is predominantly produced near the wall. This observation is further supported by the similar analyses on the minimal seeds and the edge states. Furthermore, we show that the time evolution of production-over-dissipation curves provides a clear distinction between the different initial amplification stages of the transition to turbulence from the minimal seed."}],"article_processing_charge":"No","title":"Upper edge of chaos and the energetics of transition in pipe flow","article_number":"023903","date_created":"2020-02-27T10:26:57Z","year":"2020","publication":"Physical Review Fluids","publication_identifier":{"issn":["2469-990X"]},"doi":"10.1103/physrevfluids.5.023903","issue":"2","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1912.09270"}],"type":"journal_article","intvolume":"         5","oa_version":"Preprint","article_type":"original","scopus_import":"1","_id":"7534","oa":1,"isi":1,"date_updated":"2023-08-18T06:44:46Z","department":[{"_id":"BjHo"}],"publisher":"American Physical Society","arxiv":1,"date_published":"2020-02-21T00:00:00Z","month":"02","language":[{"iso":"eng"}],"day":"21","status":"public","citation":{"ieee":"N. B. Budanur, E. Marensi, A. P. Willis, and B. Hof, “Upper edge of chaos and the energetics of transition in pipe flow,” <i>Physical Review Fluids</i>, vol. 5, no. 2. American Physical Society, 2020.","short":"N.B. Budanur, E. Marensi, A.P. Willis, B. Hof, Physical Review Fluids 5 (2020).","ista":"Budanur NB, Marensi E, Willis AP, Hof B. 2020. Upper edge of chaos and the energetics of transition in pipe flow. Physical Review Fluids. 5(2), 023903.","ama":"Budanur NB, Marensi E, Willis AP, Hof B. Upper edge of chaos and the energetics of transition in pipe flow. <i>Physical Review Fluids</i>. 2020;5(2). doi:<a href=\"https://doi.org/10.1103/physrevfluids.5.023903\">10.1103/physrevfluids.5.023903</a>","chicago":"Budanur, Nazmi B, Elena Marensi, Ashley P. Willis, and Björn Hof. “Upper Edge of Chaos and the Energetics of Transition in Pipe Flow.” <i>Physical Review Fluids</i>. American Physical Society, 2020. <a href=\"https://doi.org/10.1103/physrevfluids.5.023903\">https://doi.org/10.1103/physrevfluids.5.023903</a>.","apa":"Budanur, N. B., Marensi, E., Willis, A. P., &#38; Hof, B. (2020). Upper edge of chaos and the energetics of transition in pipe flow. <i>Physical Review Fluids</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevfluids.5.023903\">https://doi.org/10.1103/physrevfluids.5.023903</a>","mla":"Budanur, Nazmi B., et al. “Upper Edge of Chaos and the Energetics of Transition in Pipe Flow.” <i>Physical Review Fluids</i>, vol. 5, no. 2, 023903, American Physical Society, 2020, doi:<a href=\"https://doi.org/10.1103/physrevfluids.5.023903\">10.1103/physrevfluids.5.023903</a>."}},{"date_created":"2020-02-28T09:18:01Z","year":"2020","publication":"Israel Journal of Plant Sciences","publication_identifier":{"issn":["0792-9978"],"eissn":["2223-8980"]},"doi":"10.1163/22238980-20191110","issue":"1-2","quality_controlled":"1","volume":67,"author":[{"first_name":"Inge","last_name":"Verstraeten","orcid":"0000-0001-7241-2328","id":"362BF7FE-F248-11E8-B48F-1D18A9856A87","full_name":"Verstraeten, Inge"},{"full_name":"Buyle, H.","last_name":"Buyle","first_name":"H."},{"full_name":"Werbrouck, S.","first_name":"S.","last_name":"Werbrouck"},{"last_name":"Van Labeke","first_name":"M.C.","full_name":"Van Labeke, M.C."},{"first_name":"D.","last_name":"Geelen","full_name":"Geelen, D."}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000525343300004"]},"publication_status":"published","abstract":[{"lang":"eng","text":" In vitro propagation of the ornamentally interesting species Wikstroemia gemmata is limited by the recalcitrance to form adventitious roots. In this article, two strategies to improve the rooting capacity of in vitro microcuttings are presented. Firstly, the effect of exogenous auxin was evaluated in both light and dark cultivated stem segments and also the sucrose-content of the medium was varied in order to determine better rooting conditions. Secondly, different spectral lights were evaluated and the effect on shoot growth and root induction demonstrated that the exact spectral composition of light is important for successful in vitro growth and development of Wikstroemia gemmata. We show that exogenous auxin cannot compensate for the poor rooting under unfavorable light conditions. Adapting the culture conditions is therefore paramount for successful industrial propagation of Wikstroemia gemmata. "}],"article_processing_charge":"No","page":"16-26","title":"In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality","day":"01","status":"public","citation":{"mla":"Verstraeten, Inge, et al. “In Vitro Shoot Growth and Adventitious Rooting of Wikstroemia Gemmata Depends on Light Quality.” <i>Israel Journal of Plant Sciences</i>, vol. 67, no. 1–2, Brill, 2020, pp. 16–26, doi:<a href=\"https://doi.org/10.1163/22238980-20191110\">10.1163/22238980-20191110</a>.","chicago":"Verstraeten, Inge, H. Buyle, S. Werbrouck, M.C. Van Labeke, and D. Geelen. “In Vitro Shoot Growth and Adventitious Rooting of Wikstroemia Gemmata Depends on Light Quality.” <i>Israel Journal of Plant Sciences</i>. Brill, 2020. <a href=\"https://doi.org/10.1163/22238980-20191110\">https://doi.org/10.1163/22238980-20191110</a>.","apa":"Verstraeten, I., Buyle, H., Werbrouck, S., Van Labeke, M. C., &#38; Geelen, D. (2020). In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality. <i>Israel Journal of Plant Sciences</i>. Brill. <a href=\"https://doi.org/10.1163/22238980-20191110\">https://doi.org/10.1163/22238980-20191110</a>","ista":"Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. 2020. In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality. Israel Journal of Plant Sciences. 67(1–2), 16–26.","ama":"Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality. <i>Israel Journal of Plant Sciences</i>. 2020;67(1-2):16-26. doi:<a href=\"https://doi.org/10.1163/22238980-20191110\">10.1163/22238980-20191110</a>","ieee":"I. Verstraeten, H. Buyle, S. Werbrouck, M. C. Van Labeke, and D. Geelen, “In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality,” <i>Israel Journal of Plant Sciences</i>, vol. 67, no. 1–2. Brill, pp. 16–26, 2020.","short":"I. Verstraeten, H. Buyle, S. Werbrouck, M.C. Van Labeke, D. Geelen, Israel Journal of Plant Sciences 67 (2020) 16–26."},"type":"journal_article","oa_version":"None","intvolume":"        67","article_type":"original","scopus_import":"1","_id":"7540","isi":1,"date_updated":"2023-08-18T06:45:15Z","department":[{"_id":"JiFr"}],"publisher":"Brill","date_published":"2020-02-01T00:00:00Z","month":"02","language":[{"iso":"eng"}]},{"ec_funded":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"day":"23","status":"public","citation":{"apa":"Gao, F., Wang, J.-H., Watzinger, H., Hu, H., Rančić, M. J., Zhang, J.-Y., … Zhang, J.-J. (2020). Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.201906523\">https://doi.org/10.1002/adma.201906523</a>","chicago":"Gao, Fei, Jian-Huan Wang, Hannes Watzinger, Hao Hu, Marko J. Rančić, Jie-Yin Zhang, Ting Wang, et al. “Site-Controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin-Orbit Coupling.” <i>Advanced Materials</i>. Wiley, 2020. <a href=\"https://doi.org/10.1002/adma.201906523\">https://doi.org/10.1002/adma.201906523</a>.","mla":"Gao, Fei, et al. “Site-Controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin-Orbit Coupling.” <i>Advanced Materials</i>, vol. 32, no. 16, 1906523, Wiley, 2020, doi:<a href=\"https://doi.org/10.1002/adma.201906523\">10.1002/adma.201906523</a>.","ieee":"F. Gao <i>et al.</i>, “Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling,” <i>Advanced Materials</i>, vol. 32, no. 16. Wiley, 2020.","short":"F. Gao, J.-H. Wang, H. Watzinger, H. Hu, M.J. Rančić, J.-Y. Zhang, T. Wang, Y. Yao, G.-L. Wang, J. Kukucka, L. Vukušić, C. Kloeffel, D. Loss, F. Liu, G. Katsaros, J.-J. Zhang, Advanced Materials 32 (2020).","ama":"Gao F, Wang J-H, Watzinger H, et al. Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling. <i>Advanced Materials</i>. 2020;32(16). doi:<a href=\"https://doi.org/10.1002/adma.201906523\">10.1002/adma.201906523</a>","ista":"Gao F, Wang J-H, Watzinger H, Hu H, Rančić MJ, Zhang J-Y, Wang T, Yao Y, Wang G-L, Kukucka J, Vukušić L, Kloeffel C, Loss D, Liu F, Katsaros G, Zhang J-J. 2020. Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling. Advanced Materials. 32(16), 1906523."},"project":[{"_id":"25517E86-B435-11E9-9278-68D0E5697425","grant_number":"335497","call_identifier":"FP7","name":"Towards Spin qubits and Majorana fermions in Germanium self assembled hut-wires"},{"call_identifier":"FWF","name":"Towards scalable hut wire quantum devices","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E","grant_number":"P32235"},{"name":"TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS","call_identifier":"H2020","grant_number":"862046","_id":"237E5020-32DE-11EA-91FC-C7463DDC885E"}],"article_type":"original","oa_version":"Published Version","intvolume":"        32","type":"journal_article","acknowledgement":"This work was supported by the National Key R&D Program of China (Grant Nos. 2016YFA0301701 and 2016YFA0300600), the NSFC (Grant Nos. 11574356, 11434010, and 11404252), the Strategic Priority Research Program of CAS (Grant No. XDB30000000), the ERC Starting Grant No. 335497, the FWF P32235 project, and the European Union's Horizon 2020 research and innovation program under Grant Agreement #862046. This research was supported by the Scientific Service Units of IST Austria through resources provided by the MIBA Machine Shop and the nanofabrication facility. F.L. thanks support from DOE (Grant No. DE‐FG02‐04ER46148). H.H. thanks the Startup Funding from Xi'an Jiaotong University.","_id":"7541","scopus_import":"1","isi":1,"oa":1,"file_date_updated":"2020-11-20T10:11:35Z","month":"04","language":[{"iso":"eng"}],"date_published":"2020-04-23T00:00:00Z","department":[{"_id":"GeKa"}],"publisher":"Wiley","date_updated":"2026-06-18T17:54:46Z","year":"2020","date_created":"2020-02-28T09:47:00Z","article_number":"1906523","issue":"16","publication_identifier":{"issn":["0935-9648"]},"doi":"10.1002/adma.201906523","publication":"Advanced Materials","corr_author":"1","file":[{"date_created":"2020-11-20T10:11:35Z","content_type":"application/pdf","file_name":"2020_AdvancedMaterials_Gao.pdf","success":1,"creator":"dernst","file_id":"8782","access_level":"open_access","relation":"main_file","checksum":"c622737dc295972065782558337124a2","file_size":5242880,"date_updated":"2020-11-20T10:11:35Z"}],"quality_controlled":"1","has_accepted_license":"1","ddc":["530"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Gao","first_name":"Fei","full_name":"Gao, Fei"},{"last_name":"Wang","first_name":"Jian-Huan","full_name":"Wang, Jian-Huan"},{"full_name":"Watzinger, Hannes","id":"35DF8E50-F248-11E8-B48F-1D18A9856A87","last_name":"Watzinger","first_name":"Hannes"},{"first_name":"Hao","last_name":"Hu","full_name":"Hu, Hao"},{"full_name":"Rančić, Marko J.","last_name":"Rančić","first_name":"Marko J."},{"first_name":"Jie-Yin","last_name":"Zhang","full_name":"Zhang, Jie-Yin"},{"full_name":"Wang, Ting","first_name":"Ting","last_name":"Wang"},{"first_name":"Yuan","last_name":"Yao","full_name":"Yao, Yuan"},{"last_name":"Wang","first_name":"Gui-Lei","full_name":"Wang, Gui-Lei"},{"full_name":"Kukucka, Josip","id":"3F5D8856-F248-11E8-B48F-1D18A9856A87","first_name":"Josip","last_name":"Kukucka"},{"orcid":"0000-0003-2424-8636","id":"31E9F056-F248-11E8-B48F-1D18A9856A87","full_name":"Vukušić, Lada","first_name":"Lada","last_name":"Vukušić"},{"full_name":"Kloeffel, Christoph","last_name":"Kloeffel","first_name":"Christoph"},{"full_name":"Loss, Daniel","last_name":"Loss","first_name":"Daniel"},{"last_name":"Liu","first_name":"Feng","full_name":"Liu, Feng"},{"last_name":"Katsaros","first_name":"Georgios","orcid":"0000-0001-8342-202X","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Katsaros, Georgios"},{"last_name":"Zhang","first_name":"Jian-Jun","full_name":"Zhang, Jian-Jun"}],"volume":32,"acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"M-Shop"}],"related_material":{"record":[{"id":"9222","relation":"research_data","status":"public"},{"relation":"dissertation_contains","id":"7996","status":"public"},{"id":"17444","relation":"other","status":"public"}]},"pmid":1,"article_processing_charge":"Yes (via OA deal)","abstract":[{"text":"Semiconductor nanowires have been playing a crucial role in the development of nanoscale devices for the realization of spin qubits, Majorana fermions, single photon emitters, nanoprocessors, etc. The monolithic growth of site‐controlled nanowires is a prerequisite toward the next generation of devices that will require addressability and scalability. Here, combining top‐down nanofabrication and bottom‐up self‐assembly, the growth of Ge wires on prepatterned Si (001) substrates with controllable position, distance, length, and structure is reported. This is achieved by a novel growth process that uses a SiGe strain‐relaxation template and can be potentially generalized to other material combinations. Transport measurements show an electrically tunable spin–orbit coupling, with a spin–orbit length similar to that of III–V materials. Also, charge sensing between quantum dots in closely spaced wires is observed, which underlines their potential for the realization of advanced quantum devices. The reported results open a path toward scalable qubit devices using nanowires on silicon.","lang":"eng"}],"external_id":{"isi":["000516660900001"],"pmid":["32105375"]},"publication_status":"published","title":"Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling"},{"citation":{"apa":"Cohn, J. A., Cebul, E. R., Valperga, G., Brose, L., de Bono, M., Heiman, M. G., &#38; Pierce, J. T. (2020). Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron. <i>Developmental Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ydbio.2020.01.005\">https://doi.org/10.1016/j.ydbio.2020.01.005</a>","chicago":"Cohn, Jesse A., Elizabeth R. Cebul, Giulio Valperga, Lotti Brose, Mario de Bono, Maxwell G. Heiman, and Jonathan T. Pierce. “Long-Term Activity Drives Dendritic Branch Elaboration of a C. Elegans Sensory Neuron.” <i>Developmental Biology</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.ydbio.2020.01.005\">https://doi.org/10.1016/j.ydbio.2020.01.005</a>.","mla":"Cohn, Jesse A., et al. “Long-Term Activity Drives Dendritic Branch Elaboration of a C. Elegans Sensory Neuron.” <i>Developmental Biology</i>, vol. 461, no. 1, Elsevier, 2020, pp. 66–74, doi:<a href=\"https://doi.org/10.1016/j.ydbio.2020.01.005\">10.1016/j.ydbio.2020.01.005</a>.","short":"J.A. Cohn, E.R. Cebul, G. Valperga, L. Brose, M. de Bono, M.G. Heiman, J.T. Pierce, Developmental Biology 461 (2020) 66–74.","ieee":"J. A. Cohn <i>et al.</i>, “Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron,” <i>Developmental Biology</i>, vol. 461, no. 1. Elsevier, pp. 66–74, 2020.","ama":"Cohn JA, Cebul ER, Valperga G, et al. Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron. <i>Developmental Biology</i>. 2020;461(1):66-74. doi:<a href=\"https://doi.org/10.1016/j.ydbio.2020.01.005\">10.1016/j.ydbio.2020.01.005</a>","ista":"Cohn JA, Cebul ER, Valperga G, Brose L, de Bono M, Heiman MG, Pierce JT. 2020. Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron. Developmental Biology. 461(1), 66–74."},"day":"01","status":"public","date_published":"2020-05-01T00:00:00Z","language":[{"iso":"eng"}],"month":"05","date_updated":"2021-01-12T08:14:06Z","publisher":"Elsevier","oa":1,"_id":"7545","intvolume":"       461","oa_version":"Preprint","article_type":"original","type":"journal_article","main_file_link":[{"url":"https://doi.org/10.1101/685339","open_access":"1"}],"quality_controlled":"1","publication_identifier":{"issn":["0012-1606"]},"doi":"10.1016/j.ydbio.2020.01.005","issue":"1","publication":"Developmental Biology","date_created":"2020-02-28T10:38:32Z","year":"2020","title":"Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron","article_processing_charge":"No","page":"66-74","publication_status":"published","abstract":[{"lang":"eng","text":"Neuronal activity often leads to alterations in gene expression and cellular architecture. The nematode Caenorhabditis elegans, owing to its compact translucent nervous system, is a powerful system in which to study conserved aspects of the development and plasticity of neuronal morphology. Here we focus on one pair of sensory neurons, termed URX, which the worm uses to sense and avoid high levels of environmental oxygen. Previous studies have reported that the URX neuron pair has variable branched endings at its dendritic sensory tip. By controlling oxygen levels and analyzing mutants, we found that these microtubule-rich branched endings grow over time as a consequence of neuronal activity in adulthood. We also find that the growth of these branches correlates with an increase in cellular sensitivity to particular ranges of oxygen that is observable in the behavior of older worms. Given the strengths of C. elegans as a model organism, URX may serve as a potent system for uncovering genes and mechanisms involved in activity-dependent morphological changes in neurons and possible adaptive changes in the aging nervous system."}],"author":[{"full_name":"Cohn, Jesse A.","first_name":"Jesse A.","last_name":"Cohn"},{"full_name":"Cebul, Elizabeth R.","last_name":"Cebul","first_name":"Elizabeth R."},{"first_name":"Giulio","last_name":"Valperga","full_name":"Valperga, Giulio"},{"full_name":"Brose, Lotti","last_name":"Brose","first_name":"Lotti"},{"id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8347-0443","full_name":"de Bono, Mario","last_name":"de Bono","first_name":"Mario"},{"first_name":"Maxwell G.","last_name":"Heiman","full_name":"Heiman, Maxwell G."},{"full_name":"Pierce, Jonathan T.","last_name":"Pierce","first_name":"Jonathan T."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","volume":461},{"date_published":"2020-01-08T00:00:00Z","month":"01","language":[{"iso":"eng"}],"date_updated":"2024-10-09T20:59:20Z","publisher":"Cell Press","department":[{"_id":"MaDe"}],"isi":1,"file_date_updated":"2020-07-14T12:48:00Z","oa":1,"_id":"7546","oa_version":"Published Version","intvolume":"       105","article_type":"original","type":"journal_article","citation":{"chicago":"Beets, Isabel, Gaotian Zhang, Lorenz A. Fenk, Changchun Chen, Geoffrey M. Nelson, Marie-Anne Félix, and Mario de Bono. “Natural Variation in a Dendritic Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide Expression.” <i>Neuron</i>. Cell Press, 2020. <a href=\"https://doi.org/10.1016/j.neuron.2019.10.001\">https://doi.org/10.1016/j.neuron.2019.10.001</a>.","apa":"Beets, I., Zhang, G., Fenk, L. A., Chen, C., Nelson, G. M., Félix, M.-A., &#38; de Bono, M. (2020). Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression. <i>Neuron</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.neuron.2019.10.001\">https://doi.org/10.1016/j.neuron.2019.10.001</a>","mla":"Beets, Isabel, et al. “Natural Variation in a Dendritic Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide Expression.” <i>Neuron</i>, vol. 105, no. 1, Cell Press, 2020, p. 106–121.e10, doi:<a href=\"https://doi.org/10.1016/j.neuron.2019.10.001\">10.1016/j.neuron.2019.10.001</a>.","short":"I. Beets, G. Zhang, L.A. Fenk, C. Chen, G.M. Nelson, M.-A. Félix, M. de Bono, Neuron 105 (2020) 106–121.e10.","ieee":"I. Beets <i>et al.</i>, “Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression,” <i>Neuron</i>, vol. 105, no. 1. Cell Press, p. 106–121.e10, 2020.","ista":"Beets I, Zhang G, Fenk LA, Chen C, Nelson GM, Félix M-A, de Bono M. 2020. Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression. Neuron. 105(1), 106–121.e10.","ama":"Beets I, Zhang G, Fenk LA, et al. Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression. <i>Neuron</i>. 2020;105(1):106-121.e10. doi:<a href=\"https://doi.org/10.1016/j.neuron.2019.10.001\">10.1016/j.neuron.2019.10.001</a>"},"day":"08","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"title":"Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression","article_processing_charge":"No","page":"106-121.e10","publication_status":"published","external_id":{"pmid":["31757604"],"isi":["000507341300012"]},"abstract":[{"lang":"eng","text":"The extent to which behavior is shaped by experience varies between individuals. Genetic differences contribute to this variation, but the neural mechanisms are not understood. Here, we dissect natural variation in the behavioral flexibility of two Caenorhabditis elegans wild strains. In one strain, a memory of exposure to 21% O2 suppresses CO2-evoked locomotory arousal; in the other, CO2 evokes arousal regardless of previous O2 experience. We map that variation to a polymorphic dendritic scaffold protein, ARCP-1, expressed in sensory neurons. ARCP-1 binds the Ca2+-dependent phosphodiesterase PDE-1 and co-localizes PDE-1 with molecular sensors for CO2 at dendritic ends. Reducing ARCP-1 or PDE-1 activity promotes CO2 escape by altering neuropeptide expression in the BAG CO2 sensors. Variation in ARCP-1 alters behavioral plasticity in multiple paradigms. Our findings are reminiscent of genetic accommodation, an evolutionary process by which phenotypic flexibility in response to environmental variation is reset by genetic change."}],"pmid":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"last_name":"Beets","first_name":"Isabel","full_name":"Beets, Isabel"},{"first_name":"Gaotian","last_name":"Zhang","full_name":"Zhang, Gaotian"},{"full_name":"Fenk, Lorenz A.","first_name":"Lorenz A.","last_name":"Fenk"},{"full_name":"Chen, Changchun","first_name":"Changchun","last_name":"Chen"},{"full_name":"Nelson, Geoffrey M.","first_name":"Geoffrey M.","last_name":"Nelson"},{"full_name":"Félix, Marie-Anne","first_name":"Marie-Anne","last_name":"Félix"},{"first_name":"Mario","last_name":"de Bono","full_name":"de Bono, Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8347-0443"}],"volume":105,"has_accepted_license":"1","ddc":["570"],"corr_author":"1","file":[{"content_type":"application/pdf","file_name":"2020_Neuron_Beets.pdf","date_created":"2020-03-02T15:43:57Z","creator":"dernst","file_id":"7558","file_size":3294066,"date_updated":"2020-07-14T12:48:00Z","checksum":"799bfd297a008753a688b30d3958fa48","relation":"main_file","access_level":"open_access"}],"quality_controlled":"1","publication_identifier":{"issn":["0896-6273"]},"doi":"10.1016/j.neuron.2019.10.001","issue":"1","publication":"Neuron","date_created":"2020-02-28T10:43:39Z","year":"2020"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Herbert","last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-0659-3201","id":"3E4FF1BA-F248-11E8-B48F-1D18A9856A87","full_name":"Nikitenko, Anton","first_name":"Anton","last_name":"Nikitenko"}],"volume":64,"article_processing_charge":"No","page":"595-614","publication_status":"published","external_id":{"isi":["000551393100007"],"arxiv":["1705.08735"]},"abstract":[{"lang":"eng","text":"Slicing a Voronoi tessellation in ${R}^n$ with a $k$-plane gives a $k$-dimensional weighted Voronoi tessellation, also known as a power diagram or Laguerre tessellation. Mapping every simplex of the dual weighted Delaunay mosaic to the radius of the smallest empty circumscribed sphere whose center lies in the $k$-plane gives a generalized discrete Morse function. Assuming the Voronoi tessellation is generated by a Poisson point process in ${R}^n$, we study the expected number of simplices in the $k$-dimensional weighted Delaunay mosaic as well as the expected number of intervals of the Morse function, both as functions of a radius threshold. As a by-product, we obtain a new proof for the expected number of connected components (clumps) in a line section of a circular Boolean model in ${R}^n$."}],"title":"Weighted Poisson–Delaunay mosaics","date_created":"2020-03-01T23:00:39Z","year":"2020","doi":"10.1137/S0040585X97T989726","publication_identifier":{"issn":["0040-585X"],"eissn":["1095-7219"]},"issue":"4","publication":"Theory of Probability and its Applications","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1705.08735"}],"oa_version":"Preprint","intvolume":"        64","article_type":"original","type":"journal_article","scopus_import":"1","_id":"7554","isi":1,"oa":1,"date_published":"2020-02-13T00:00:00Z","month":"02","language":[{"iso":"eng"}],"date_updated":"2025-07-10T11:54:44Z","publisher":"SIAM","department":[{"_id":"HeEd"}],"arxiv":1,"ec_funded":1,"status":"public","day":"13","citation":{"mla":"Edelsbrunner, Herbert, and Anton Nikitenko. “Weighted Poisson–Delaunay Mosaics.” <i>Theory of Probability and Its Applications</i>, vol. 64, no. 4, SIAM, 2020, pp. 595–614, doi:<a href=\"https://doi.org/10.1137/S0040585X97T989726\">10.1137/S0040585X97T989726</a>.","apa":"Edelsbrunner, H., &#38; Nikitenko, A. (2020). Weighted Poisson–Delaunay mosaics. <i>Theory of Probability and Its Applications</i>. SIAM. <a href=\"https://doi.org/10.1137/S0040585X97T989726\">https://doi.org/10.1137/S0040585X97T989726</a>","chicago":"Edelsbrunner, Herbert, and Anton Nikitenko. “Weighted Poisson–Delaunay Mosaics.” <i>Theory of Probability and Its Applications</i>. SIAM, 2020. <a href=\"https://doi.org/10.1137/S0040585X97T989726\">https://doi.org/10.1137/S0040585X97T989726</a>.","ista":"Edelsbrunner H, Nikitenko A. 2020. Weighted Poisson–Delaunay mosaics. Theory of Probability and its Applications. 64(4), 595–614.","ama":"Edelsbrunner H, Nikitenko A. Weighted Poisson–Delaunay mosaics. <i>Theory of Probability and its Applications</i>. 2020;64(4):595-614. doi:<a href=\"https://doi.org/10.1137/S0040585X97T989726\">10.1137/S0040585X97T989726</a>","short":"H. Edelsbrunner, A. Nikitenko, Theory of Probability and Its Applications 64 (2020) 595–614.","ieee":"H. Edelsbrunner and A. Nikitenko, “Weighted Poisson–Delaunay mosaics,” <i>Theory of Probability and its Applications</i>, vol. 64, no. 4. SIAM, pp. 595–614, 2020."},"project":[{"_id":"266A2E9E-B435-11E9-9278-68D0E5697425","grant_number":"788183","call_identifier":"H2020","name":"Alpha Shape Theory Extended"},{"grant_number":"I02979-N35","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes","call_identifier":"FWF"}]},{"article_processing_charge":"No","date_published":"2020-05-20T00:00:00Z","month":"05","title":"Movies","date_updated":"2025-07-10T11:55:01Z","department":[{"_id":"LeSa"}],"publisher":"American Chemical Society","author":[{"last_name":"Gupta","first_name":"Chitrak","full_name":"Gupta, Chitrak"},{"full_name":"Khaniya, Umesh","last_name":"Khaniya","first_name":"Umesh"},{"last_name":"Chan","first_name":"Chun Kit","full_name":"Chan, Chun Kit"},{"full_name":"Dehez, Francois","first_name":"Francois","last_name":"Dehez"},{"first_name":"Mrinal","last_name":"Shekhar","full_name":"Shekhar, Mrinal"},{"full_name":"Gunner, M.R.","first_name":"M.R.","last_name":"Gunner"},{"full_name":"Sazanov, Leonid A","orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov","first_name":"Leonid A"},{"last_name":"Chipot","first_name":"Christophe","full_name":"Chipot, Christophe"},{"first_name":"Abhishek","last_name":"Singharoy","full_name":"Singharoy, Abhishek"}],"oa_version":"Published Version","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","type":"research_data_reference","related_material":{"record":[{"status":"public","id":"8040","relation":"used_in_publication"}]},"_id":"9878","citation":{"short":"C. Gupta, U. Khaniya, C.K. Chan, F. Dehez, M. Shekhar, M.R. Gunner, L.A. Sazanov, C. Chipot, A. Singharoy, (2020).","ieee":"C. Gupta <i>et al.</i>, “Movies.” American Chemical Society, 2020.","ama":"Gupta C, Khaniya U, Chan CK, et al. Movies. 2020. doi:<a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">10.1021/jacs.9b13450.s002</a>","ista":"Gupta C, Khaniya U, Chan CK, Dehez F, Shekhar M, Gunner MR, Sazanov LA, Chipot C, Singharoy A. 2020. Movies, American Chemical Society, <a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">10.1021/jacs.9b13450.s002</a>.","apa":"Gupta, C., Khaniya, U., Chan, C. K., Dehez, F., Shekhar, M., Gunner, M. R., … Singharoy, A. (2020). Movies. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">https://doi.org/10.1021/jacs.9b13450.s002</a>","chicago":"Gupta, Chitrak, Umesh Khaniya, Chun Kit Chan, Francois Dehez, Mrinal Shekhar, M.R. Gunner, Leonid A Sazanov, Christophe Chipot, and Abhishek Singharoy. “Movies.” American Chemical Society, 2020. <a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">https://doi.org/10.1021/jacs.9b13450.s002</a>.","mla":"Gupta, Chitrak, et al. <i>Movies</i>. American Chemical Society, 2020, doi:<a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">10.1021/jacs.9b13450.s002</a>."},"date_created":"2021-08-11T09:18:54Z","year":"2020","doi":"10.1021/jacs.9b13450.s002","status":"public","day":"20"},{"title":"Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020)","article_processing_charge":"No","publication_status":"published","abstract":[{"lang":"eng","text":"The first wafer-scale growth of site-controlled Ge/Si nanowires is reported by Georgios Katsaros, Jian-Jun Zhang, and co-workers in article number 1906523. They are highly uniform and their position, distance, length, and even square- or L-shaped structures can all be precisely controlled. The electrically tunable spin-orbit coupling demonstrated by transport measurements and the charge sensing between quantum dots in closely spaced wires open a path toward scalable qubit devices using nanowires on silicon."}],"related_material":{"record":[{"relation":"other","id":"7541","status":"public"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Gao, Fei","first_name":"Fei","last_name":"Gao"},{"full_name":"Wang, Jian‐Huan","first_name":"Jian‐Huan","last_name":"Wang"},{"id":"35DF8E50-F248-11E8-B48F-1D18A9856A87","full_name":"Watzinger, Hannes","last_name":"Watzinger","first_name":"Hannes"},{"last_name":"Hu","first_name":"Hao","full_name":"Hu, Hao"},{"full_name":"Rančić, Marko J.","first_name":"Marko J.","last_name":"Rančić"},{"full_name":"Zhang, Jie‐Yin","last_name":"Zhang","first_name":"Jie‐Yin"},{"full_name":"Wang, Ting","first_name":"Ting","last_name":"Wang"},{"first_name":"Yuan","last_name":"Yao","full_name":"Yao, Yuan"},{"first_name":"Gui‐Lei","last_name":"Wang","full_name":"Wang, Gui‐Lei"},{"first_name":"Josip","last_name":"Kukucka","id":"3F5D8856-F248-11E8-B48F-1D18A9856A87","full_name":"Kukucka, Josip"},{"full_name":"Vukušić, Lada","orcid":"0000-0003-2424-8636","id":"31E9F056-F248-11E8-B48F-1D18A9856A87","first_name":"Lada","last_name":"Vukušić"},{"full_name":"Kloeffel, Christoph","first_name":"Christoph","last_name":"Kloeffel"},{"last_name":"Loss","first_name":"Daniel","full_name":"Loss, Daniel"},{"first_name":"Feng","last_name":"Liu","full_name":"Liu, Feng"},{"first_name":"Georgios","last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8342-202X","full_name":"Katsaros, Georgios"},{"last_name":"Zhang","first_name":"Jian‐Jun","full_name":"Zhang, Jian‐Jun"}],"volume":32,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/adma.202070122"}],"ddc":["530"],"quality_controlled":"1","doi":"10.1002/adma.202070122","publication_identifier":{"issn":["0935-9648"],"eissn":["1521-4095"]},"issue":"16","publication":"Advanced Materials","date_created":"2024-08-20T08:22:42Z","year":"2020","article_number":"2070122","date_published":"2020-04-23T00:00:00Z","language":[{"iso":"eng"}],"month":"04","date_updated":"2026-06-18T17:54:47Z","department":[{"_id":"GeKa"}],"publisher":"Wiley","oa":1,"_id":"17444","oa_version":"Published Version","intvolume":"        32","type":"other_academic_publication","citation":{"apa":"Gao, F., Wang, J., Watzinger, H., Hu, H., Rančić, M. J., Zhang, J., … Zhang, J. (2020). <i>Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020)</i>. <i>Advanced Materials</i> (Vol. 32). Wiley. <a href=\"https://doi.org/10.1002/adma.202070122\">https://doi.org/10.1002/adma.202070122</a>","chicago":"Gao, Fei, Jian‐Huan Wang, Hannes Watzinger, Hao Hu, Marko J. Rančić, Jie‐Yin Zhang, Ting Wang, et al. <i>Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020)</i>. <i>Advanced Materials</i>. Vol. 32. Wiley, 2020. <a href=\"https://doi.org/10.1002/adma.202070122\">https://doi.org/10.1002/adma.202070122</a>.","mla":"Gao, Fei, et al. “Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020).” <i>Advanced Materials</i>, vol. 32, no. 16, 2070122, Wiley, 2020, doi:<a href=\"https://doi.org/10.1002/adma.202070122\">10.1002/adma.202070122</a>.","short":"F. Gao, J. Wang, H. Watzinger, H. Hu, M.J. Rančić, J. Zhang, T. Wang, Y. Yao, G. Wang, J. Kukucka, L. Vukušić, C. Kloeffel, D. Loss, F. Liu, G. Katsaros, J. Zhang, Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020), Wiley, 2020.","ieee":"F. Gao <i>et al.</i>, <i>Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020)</i>, vol. 32, no. 16. Wiley, 2020.","ama":"Gao F, Wang J, Watzinger H, et al. <i>Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020)</i>. Vol 32. Wiley; 2020. doi:<a href=\"https://doi.org/10.1002/adma.202070122\">10.1002/adma.202070122</a>","ista":"Gao F, Wang J, Watzinger H, Hu H, Rančić MJ, Zhang J, Wang T, Yao Y, Wang G, Kukucka J, Vukušić L, Kloeffel C, Loss D, Liu F, Katsaros G, Zhang J. 2020. Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020), Wiley,p."},"status":"public","day":"23"},{"title":"Correlation between optical and UV variability of a large sample of quasars","publication_status":"published","abstract":[{"text":"The variability of quasars across multiple wavelengths is a useful probe of physical conditions in active galactic nuclei. In particular, variable accretion rates, instabilities, and reverberation effects in the accretion disc of a supermassive black hole are expected to produce correlated flux variations in ultraviolet (UV) and optical bands. Recent work has further argued that binary quasars should exhibit strongly correlated UV and optical periodicities. Strong UV–optical correlations have indeed been established in small samples of (N ≲ 30) quasars with well-sampled light curves, and have extended the ‘bluer-when-brighter’ trend previously found within the optical bands. Here, we further test the nature of quasar variability by examining the observed-frame UV–optical correlations among bright quasars extracted from the Half Million Quasars (HMQ) catalogue. We identified a large sample of 1315 quasars in HMQ with overlapping UV and optical light curves from the Galaxy Evolution Explorer and the Catalina Real-time Transient Survey, respectively. We find that strong correlations exist in this much larger sample, but we rule out, at ∼95 per cent confidence, the simple hypothesis that the intrinsic UV and optical variations of all quasars are fully correlated. Our results therefore imply the existence of physical mechanism(s) that can generate uncorrelated optical and UV flux variations.","lang":"eng"}],"article_processing_charge":"No","page":"1403-1413","volume":495,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"first_name":"Chengcheng","last_name":"Xin","full_name":"Xin, Chengcheng"},{"full_name":"Charisi, Maria","last_name":"Charisi","first_name":"Maria"},{"id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","full_name":"Haiman, Zoltán","last_name":"Haiman","first_name":"Zoltán"},{"full_name":"Schiminovich, David","last_name":"Schiminovich","first_name":"David"}],"extern":"1","main_file_link":[{"url":"https://doi.org/10.1093/mnras/staa1258","open_access":"1"}],"quality_controlled":"1","publication":"Monthly Notices of the Royal Astronomical Society","publication_identifier":{"issn":["0035-8711","1365-2966"]},"doi":"10.1093/mnras/staa1258","issue":"1","date_created":"2024-09-05T09:27:32Z","year":"2020","date_updated":"2024-09-11T08:08:21Z","publisher":"Oxford University Press","date_published":"2020-05-07T00:00:00Z","language":[{"iso":"eng"}],"month":"05","oa":1,"scopus_import":"1","_id":"17524","type":"journal_article","intvolume":"       495","oa_version":"Published Version","article_type":"original","citation":{"ama":"Xin C, Charisi M, Haiman Z, Schiminovich D. Correlation between optical and UV variability of a large sample of quasars. <i>Monthly Notices of the Royal Astronomical Society</i>. 2020;495(1):1403-1413. doi:<a href=\"https://doi.org/10.1093/mnras/staa1258\">10.1093/mnras/staa1258</a>","ista":"Xin C, Charisi M, Haiman Z, Schiminovich D. 2020. Correlation between optical and UV variability of a large sample of quasars. Monthly Notices of the Royal Astronomical Society. 495(1), 1403–1413.","short":"C. Xin, M. Charisi, Z. Haiman, D. Schiminovich, Monthly Notices of the Royal Astronomical Society 495 (2020) 1403–1413.","ieee":"C. Xin, M. Charisi, Z. Haiman, and D. Schiminovich, “Correlation between optical and UV variability of a large sample of quasars,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 495, no. 1. Oxford University Press, pp. 1403–1413, 2020.","mla":"Xin, Chengcheng, et al. “Correlation between Optical and UV Variability of a Large Sample of Quasars.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 495, no. 1, Oxford University Press, 2020, pp. 1403–13, doi:<a href=\"https://doi.org/10.1093/mnras/staa1258\">10.1093/mnras/staa1258</a>.","apa":"Xin, C., Charisi, M., Haiman, Z., &#38; Schiminovich, D. (2020). Correlation between optical and UV variability of a large sample of quasars. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/mnras/staa1258\">https://doi.org/10.1093/mnras/staa1258</a>","chicago":"Xin, Chengcheng, Maria Charisi, Zoltán Haiman, and David Schiminovich. “Correlation between Optical and UV Variability of a Large Sample of Quasars.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press, 2020. <a href=\"https://doi.org/10.1093/mnras/staa1258\">https://doi.org/10.1093/mnras/staa1258</a>."},"status":"public","day":"07"},{"day":"29","status":"public","citation":{"short":"J.M.Z. Matilla, S. Waterval, Z. Haiman, The Astronomical Journal 159 (2020).","ieee":"J. M. Z. Matilla, S. Waterval, and Z. Haiman, “Optimizing simulation parameters for weak lensing analyses involving non-Gaussian observables,” <i>The Astronomical Journal</i>, vol. 159, no. 6. American Astronomical Society, 2020.","ama":"Matilla JMZ, Waterval S, Haiman Z. Optimizing simulation parameters for weak lensing analyses involving non-Gaussian observables. <i>The Astronomical Journal</i>. 2020;159(6). doi:<a href=\"https://doi.org/10.3847/1538-3881/ab8f8c\">10.3847/1538-3881/ab8f8c</a>","ista":"Matilla JMZ, Waterval S, Haiman Z. 2020. Optimizing simulation parameters for weak lensing analyses involving non-Gaussian observables. The Astronomical Journal. 159(6), 284.","chicago":"Matilla, José Manuel Zorrilla, Stefan Waterval, and Zoltán Haiman. “Optimizing Simulation Parameters for Weak Lensing Analyses Involving Non-Gaussian Observables.” <i>The Astronomical Journal</i>. American Astronomical Society, 2020. <a href=\"https://doi.org/10.3847/1538-3881/ab8f8c\">https://doi.org/10.3847/1538-3881/ab8f8c</a>.","apa":"Matilla, J. M. Z., Waterval, S., &#38; Haiman, Z. (2020). Optimizing simulation parameters for weak lensing analyses involving non-Gaussian observables. <i>The Astronomical Journal</i>. American Astronomical Society. <a href=\"https://doi.org/10.3847/1538-3881/ab8f8c\">https://doi.org/10.3847/1538-3881/ab8f8c</a>","mla":"Matilla, José Manuel Zorrilla, et al. “Optimizing Simulation Parameters for Weak Lensing Analyses Involving Non-Gaussian Observables.” <i>The Astronomical Journal</i>, vol. 159, no. 6, 284, American Astronomical Society, 2020, doi:<a href=\"https://doi.org/10.3847/1538-3881/ab8f8c\">10.3847/1538-3881/ab8f8c</a>."},"article_type":"original","oa_version":"Published Version","intvolume":"       159","type":"journal_article","_id":"17528","scopus_import":"1","oa":1,"language":[{"iso":"eng"}],"month":"05","date_published":"2020-05-29T00:00:00Z","publisher":"American Astronomical Society","date_updated":"2024-09-11T09:03:15Z","year":"2020","date_created":"2024-09-05T09:35:49Z","article_number":"284","issue":"6","doi":"10.3847/1538-3881/ab8f8c","publication_identifier":{"issn":["0004-6256","1538-3881"]},"publication":"The Astronomical Journal","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.3847/1538-3881/ab8f8c","open_access":"1"}],"extern":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"full_name":"Matilla, José Manuel Zorrilla","last_name":"Matilla","first_name":"José Manuel Zorrilla"},{"full_name":"Waterval, Stefan","first_name":"Stefan","last_name":"Waterval"},{"first_name":"Zoltán","last_name":"Haiman","id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","full_name":"Haiman, Zoltán"}],"volume":159,"article_processing_charge":"No","abstract":[{"text":"We performed a series of numerical experiments to quantify the sensitivity of the predictions for weak lensing statistics obtained in ray-tracing dark matter (DM)-only simulations, to two hyper-parameters that influence the accuracy as well as the computational cost of the predictions: the thickness of the lens planes used to build past light cones and the mass resolution of the underlying DM simulation. The statistics considered are the power spectrum (PS) and a series of non-Gaussian observables, including the one-point probability density function, lensing peaks, and Minkowski functionals. Counterintuitively, we find that using thin lens planes (< 60 h−1 Mpc on a 240 h−1 Mpc simulation box) suppresses the PS over a broad range of scales beyond what would be acceptable for a survey comparable to the Large Synoptic Survey Telescope (LSST). A mass resolution of 7.2 × 1011 h−1 M⊙ per DM particle (or 2563 particles in a (240 h−1 Mpc)3 box) is sufficient to extract information using the PS and non-Gaussian statistics from weak lensing data at angular scales down to 1' with LSST-like levels of shape noise.","lang":"eng"}],"publication_status":"published","title":"Optimizing simulation parameters for weak lensing analyses involving non-Gaussian observables"},{"volume":899,"extern":"1","author":[{"last_name":"Tagawa","first_name":"Hiromichi","full_name":"Tagawa, Hiromichi"},{"id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","full_name":"Haiman, Zoltán","last_name":"Haiman","first_name":"Zoltán"},{"last_name":"Bartos","first_name":"Imre","full_name":"Bartos, Imre"},{"last_name":"Kocsis","first_name":"Bence","full_name":"Kocsis, Bence"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Spin evolution of stellar-mass black hole binaries in active galactic nuclei","abstract":[{"lang":"eng","text":"The astrophysical origin of gravitational wave (GW) events is one of the most timely problems in the wake of the LIGO/Virgo discoveries. In active galactic nuclei (AGN), binaries form and evolve efficiently by dynamical interactions and gaseous dissipation. Previous studies have suggested that binary black hole (BBH) mergers in AGN disks can contribute significantly to BBH mergers observed by GW interferometers. Here we examine the distribution of the effective spin parameter χeff of this GW source population. We extend our semi-analytical model of binary formation and evolution in AGN disks by following the evolution of the binary orbital angular momenta and black hole (BH) spins. BH spins change due to gas accretion and BH mergers, while the binary orbital angular momenta evolve due to gas accretion and binary-single interactions. We find that the distribution of χeff predicted by our AGN model is similar to the distribution observed during LIGO/Virgo O1 and O2. On the other hand, if radial migration of BHs is inefficient, χeff is skewed toward higher values compared with the observed distribution, because of the paucity of scattering events that would randomize spin directions relative to the orbital plane. We suggest that high binary masses and the positive correlation between binary mass and the standard deviation of χeff for chirp masses up to ≈20 M⊙, can be possible signatures for mergers originating in AGN disks. Finally, hierarchical mergers in AGN disks naturally produce properties of the recent GW event GW190412, including a low mass ratio, a high primary BH spin, and a significant spin component in the orbital plane."}],"publication_status":"published","article_processing_charge":"No","publication":"The Astrophysical Journal","issue":"1","publication_identifier":{"issn":["0004-637X","1538-4357"]},"doi":"10.3847/1538-4357/aba2cc","article_number":"26","year":"2020","date_created":"2024-09-05T09:36:37Z","main_file_link":[{"url":"https://doi.org/10.3847/1538-4357/aba2cc","open_access":"1"}],"quality_controlled":"1","_id":"17529","scopus_import":"1","type":"journal_article","article_type":"original","oa_version":"Published Version","intvolume":"       899","publisher":"American Astronomical Society","date_updated":"2024-09-11T09:11:55Z","month":"08","language":[{"iso":"eng"}],"date_published":"2020-08-10T00:00:00Z","oa":1,"status":"public","day":"10","citation":{"mla":"Tagawa, Hiromichi, et al. “Spin Evolution of Stellar-Mass Black Hole Binaries in Active Galactic Nuclei.” <i>The Astrophysical Journal</i>, vol. 899, no. 1, 26, American Astronomical Society, 2020, doi:<a href=\"https://doi.org/10.3847/1538-4357/aba2cc\">10.3847/1538-4357/aba2cc</a>.","chicago":"Tagawa, Hiromichi, Zoltán Haiman, Imre Bartos, and Bence Kocsis. “Spin Evolution of Stellar-Mass Black Hole Binaries in Active Galactic Nuclei.” <i>The Astrophysical Journal</i>. American Astronomical Society, 2020. <a href=\"https://doi.org/10.3847/1538-4357/aba2cc\">https://doi.org/10.3847/1538-4357/aba2cc</a>.","apa":"Tagawa, H., Haiman, Z., Bartos, I., &#38; Kocsis, B. (2020). Spin evolution of stellar-mass black hole binaries in active galactic nuclei. <i>The Astrophysical Journal</i>. American Astronomical Society. <a href=\"https://doi.org/10.3847/1538-4357/aba2cc\">https://doi.org/10.3847/1538-4357/aba2cc</a>","ama":"Tagawa H, Haiman Z, Bartos I, Kocsis B. Spin evolution of stellar-mass black hole binaries in active galactic nuclei. <i>The Astrophysical Journal</i>. 2020;899(1). doi:<a href=\"https://doi.org/10.3847/1538-4357/aba2cc\">10.3847/1538-4357/aba2cc</a>","ista":"Tagawa H, Haiman Z, Bartos I, Kocsis B. 2020. Spin evolution of stellar-mass black hole binaries in active galactic nuclei. The Astrophysical Journal. 899(1), 26.","short":"H. Tagawa, Z. Haiman, I. Bartos, B. Kocsis, The Astrophysical Journal 899 (2020).","ieee":"H. Tagawa, Z. Haiman, I. Bartos, and B. Kocsis, “Spin evolution of stellar-mass black hole binaries in active galactic nuclei,” <i>The Astrophysical Journal</i>, vol. 899, no. 1. American Astronomical Society, 2020."}}]