[{"citation":{"ama":"Henzinger M, Upadhyay J, Upadhyay S. A unifying framework for differentially private sums under continual observation. In: Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms. Vol 2024. Society for Industrial and Applied Mathematics; 2024:995-1018. doi:10.1137/1.9781611977912.38","mla":"Henzinger, Monika, et al. “A Unifying Framework for Differentially Private Sums under Continual Observation.” Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms, vol. 2024, Society for Industrial and Applied Mathematics, 2024, pp. 995–1018, doi:10.1137/1.9781611977912.38.","short":"M. Henzinger, J. Upadhyay, S. Upadhyay, in:, Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2024, pp. 995–1018.","apa":"Henzinger, M., Upadhyay, J., & Upadhyay, S. (2024). A unifying framework for differentially private sums under continual observation. In Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms (Vol. 2024, pp. 995–1018). Alexandria, VA, United States: Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611977912.38","chicago":"Henzinger, Monika, Jalaj Upadhyay, and Sarvagya Upadhyay. “A Unifying Framework for Differentially Private Sums under Continual Observation.” In Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms, 2024:995–1018. Society for Industrial and Applied Mathematics, 2024. https://doi.org/10.1137/1.9781611977912.38.","ista":"Henzinger M, Upadhyay J, Upadhyay S. 2024. A unifying framework for differentially private sums under continual observation. Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms vol. 2024, 995–1018.","ieee":"M. Henzinger, J. Upadhyay, and S. Upadhyay, “A unifying framework for differentially private sums under continual observation,” in Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms, Alexandria, VA, United States, 2024, vol. 2024, pp. 995–1018."},"article_processing_charge":"No","publisher":"Society for Industrial and Applied Mathematics","title":"A unifying framework for differentially private sums under continual observation","date_created":"2024-03-31T22:01:13Z","year":"2024","intvolume":" 2024","external_id":{"arxiv":["2307.08970"]},"publication_identifier":{"eisbn":["9781611977912"]},"acknowledgement":"This project has received funding from the European Research Council (ERC)under the European Union’s Horizon 2020 research and innovation programme (Grant agreement No.101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)” and the AustrianScience Fund (FWF) project Z 422-N, project “Static and Dynamic Hierarchical Graph Decompositions”, I 5982-N, andproject “Fast Algorithms for a Reactive Network Layer (ReactNet)”, P 33775-N, with additional funding from the netideeSCIENCE Stiftung, 2020–2024. JU’s research was funded by the Decanal Research Grant. We thank the anonymousreviewers for their useful feedback and pointing us to the results in Matousek et al","doi":"10.1137/1.9781611977912.38","abstract":[{"text":"We study the problem of maintaining a differentially private decaying sum under continual observation. We give a unifying framework and an efficient algorithm for this problem for any sufficiently smooth function. Our algorithm is the first differentially private algorithm that does not have a multiplicative error for polynomially decaying weights. Our algorithm improves on all prior works on differentially private decaying sums under continual observation and recovers exactly the additive error for the special case of continual counting from Henzinger et al. (SODA 2023) as a corollary.\r\nOur algorithm is a variant of the matrix mechanism whose error depends on the γ2 and γF norm of the underlying matrix. We give a constructive proof for an almost exact upper bound on the γ2 and γF norm and an almost tight lower bound on the γ2 norm for a large class of lower-triangular matrices. This is the first non-trivial lower bound for lower-triangular matrices whose non-zero entries are not all the same. It includes matrices for all continual decaying sums problems, resulting in an upper bound on the additive error of any differentially private decaying sums algorithm under continual observation.\r\nWe also explore some implications of our result in discrepancy theory and operator algebra. Given the importance of the γ2 norm in computer science and the extensive work in mathematics, we believe our result will have further applications.","lang":"eng"}],"conference":{"end_date":"2024-01-10","name":"SODA: Symposium on Discrete Algorithms","location":"Alexandria, VA, United States","start_date":"2024-01-07"},"day":"04","date_published":"2024-01-04T00:00:00Z","author":[{"full_name":"Henzinger, Monika H","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","last_name":"Henzinger"},{"first_name":"Jalaj","full_name":"Upadhyay, Jalaj","last_name":"Upadhyay"},{"full_name":"Upadhyay, Sarvagya","first_name":"Sarvagya","last_name":"Upadhyay"}],"arxiv":1,"oa":1,"_id":"15253","page":"995-1018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","quality_controlled":"1","status":"public","date_updated":"2025-04-14T13:50:49Z","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2307.08970","open_access":"1"}],"publication_status":"published","volume":2024,"month":"01","type":"conference","department":[{"_id":"MoHe"}],"ec_funded":1,"scopus_import":"1","corr_author":"1","publication":"Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms","project":[{"call_identifier":"H2020","grant_number":"101019564","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","name":"The design and evaluation of modern fully dynamic data structures"},{"grant_number":"Z00422","name":"Efficient algorithms","_id":"34def286-11ca-11ed-8bc3-da5948e1613c"},{"name":"Static and Dynamic Hierarchical Graph Decompositions","_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103","grant_number":"I05982"},{"grant_number":"P33775","name":"Fast Algorithms for a Reactive Network Layer","_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe"}],"language":[{"iso":"eng"}]},{"article_number":"91523","quality_controlled":"1","related_material":{"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://ista.ac.at/en/news/beneath-the-surface/"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"15257","oa_version":"Published Version","license":"https://creativecommons.org/licenses/by/4.0/","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"Bio"}],"volume":12,"month":"03","publication_status":"published","status":"public","date_updated":"2025-04-23T07:45:02Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ec_funded":1,"corr_author":"1","scopus_import":"1","type":"journal_article","department":[{"_id":"JiFr"}],"language":[{"iso":"eng"}],"publication":"eLife","keyword":["General Immunology and Microbiology","General Biochemistry","Genetics and Molecular Biology","General Medicine","General Neuroscience"],"project":[{"call_identifier":"H2020","grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants"},{"call_identifier":"FWF","grant_number":"I03630","name":"Molecular mechanisms of endocytic cargo recognition in plants","_id":"26538374-B435-11E9-9278-68D0E5697425"}],"DOAJ_listed":"1","citation":{"chicago":"Kulich, Ivan, Julia Schmid, Anastasiia Teplova, Linlin Qi, and Jiří Friml. “Rapid Translocation of NGR Proteins Driving Polarization of PIN-Activating D6 Protein Kinase during Root Gravitropism.” ELife. eLife Sciences Publications, 2024. https://doi.org/10.7554/elife.91523.","apa":"Kulich, I., Schmid, J., Teplova, A., Qi, L., & Friml, J. (2024). Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.91523","ista":"Kulich I, Schmid J, Teplova A, Qi L, Friml J. 2024. Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism. eLife. 12, 91523.","ieee":"I. Kulich, J. Schmid, A. Teplova, L. Qi, and J. Friml, “Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism,” eLife, vol. 12. eLife Sciences Publications, 2024.","ama":"Kulich I, Schmid J, Teplova A, Qi L, Friml J. Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism. eLife. 2024;12. doi:10.7554/elife.91523","mla":"Kulich, Ivan, et al. “Rapid Translocation of NGR Proteins Driving Polarization of PIN-Activating D6 Protein Kinase during Root Gravitropism.” ELife, vol. 12, 91523, eLife Sciences Publications, 2024, doi:10.7554/elife.91523.","short":"I. Kulich, J. Schmid, A. Teplova, L. Qi, J. Friml, ELife 12 (2024)."},"article_processing_charge":"Yes","file":[{"file_id":"15288","access_level":"open_access","checksum":"a73a84d3bf97a6d09d24308ca6dd0a0c","relation":"main_file","date_updated":"2024-04-03T13:18:00Z","file_size":11451904,"content_type":"application/pdf","success":1,"creator":"dernst","file_name":"2024_eLife_Kulich.pdf","date_created":"2024-04-03T13:18:00Z"}],"publisher":"eLife Sciences Publications","ddc":["580"],"file_date_updated":"2024-04-03T13:18:00Z","date_created":"2024-04-02T11:35:58Z","year":"2024","intvolume":" 12","external_id":{"pmid":["38441122"]},"publication_identifier":{"issn":["2050-084X"]},"pmid":1,"title":"Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism","has_accepted_license":"1","doi":"10.7554/elife.91523","article_type":"original","acknowledgement":"The research leading to these results has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme grant agreement No 742985 and Austrian Science Fund (FWF): I3630-775 B25 to J.F. This research was also supported by the Lab Support Facility (LSF) and the Imaging and Optics Facility (IOF) of IST Austria, namely Tereza Bělinová for her help with the imaging. JS was supported by FemTECH fellowship.","date_published":"2024-03-05T00:00:00Z","author":[{"last_name":"Kulich","id":"57a1567c-8314-11eb-9063-c9ddc3451a54","first_name":"Ivan","full_name":"Kulich, Ivan"},{"full_name":"Schmid, Julia","first_name":"Julia","id":"07cf4637-baaf-11ee-9227-e1de57d1d69b","last_name":"Schmid"},{"last_name":"Teplova","id":"e3736151-106c-11ec-b916-c2558e2762c6","full_name":"Teplova, Anastasiia","first_name":"Anastasiia"},{"id":"44B04502-A9ED-11E9-B6FC-583AE6697425","last_name":"Qi","first_name":"Linlin","full_name":"Qi, Linlin","orcid":"0000-0001-5187-8401"},{"last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","first_name":"Jiří"}],"oa":1,"abstract":[{"lang":"eng","text":"Root gravitropic bending represents a fundamental aspect of terrestrial plant physiology. Gravity is perceived by sedimentation of starch-rich plastids (statoliths) to the bottom of the central root cap cells. Following gravity perception, intercellular auxin transport is redirected downwards leading to an asymmetric auxin accumulation at the lower root side causing inhibition of cell expansion, ultimately resulting in downwards bending. How gravity-induced statoliths repositioning is translated into asymmetric auxin distribution remains unclear despite PIN auxin efflux carriers and the Negative Gravitropic Response of roots (NGR) proteins polarize along statolith sedimentation, thus providing a plausible mechanism for auxin flow redirection. In this study, using a functional NGR1-GFP construct, we visualized the NGR1 localization on the statolith surface and plasma membrane (PM) domains in close proximity to the statoliths, correlating with their movements. We determined that NGR1 binding to these PM domains is indispensable for NGR1 functionality and relies on cysteine acylation and adjacent polybasic regions as well as on lipid and sterol PM composition. Detailed timing of the early events following graviperception suggested that both NGR1 repolarization and initial auxin asymmetry precede the visible PIN3 polarization. This discrepancy motivated us to unveil a rapid, NGR-dependent translocation of PIN-activating AGCVIII kinase D6PK towards lower PMs of gravity-perceiving cells, thus providing an attractive model for rapid redirection of auxin fluxes following gravistimulation."}],"day":"05"},{"language":[{"iso":"eng"}],"publication":"PLOS Computational Biology","scopus_import":"1","OA_place":"publisher","type":"journal_article","department":[{"_id":"TiVo"}],"OA_type":"gold","volume":20,"month":"03","publication_status":"published","isi":1,"status":"public","date_updated":"2025-09-04T13:24:19Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"quality_controlled":"1","article_number":"e1011797","_id":"15258","oa_version":"Published Version","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2024-03-01T00:00:00Z","oa":1,"author":[{"last_name":"Hall","full_name":"Hall, Siobhan Mackenzie","first_name":"Siobhan Mackenzie"},{"last_name":"Kochin","first_name":"Daniel","full_name":"Kochin, Daniel"},{"first_name":"Carmel","full_name":"Carne, Carmel","last_name":"Carne"},{"first_name":"Patricia","full_name":"Herterich, Patricia","last_name":"Herterich"},{"last_name":"Lewers","first_name":"Kristen Lenay","full_name":"Lewers, Kristen Lenay"},{"last_name":"Abdelhack","first_name":"Mohamed","full_name":"Abdelhack, Mohamed"},{"first_name":"Arun","full_name":"Ramasubramanian, Arun","last_name":"Ramasubramanian"},{"last_name":"Michael Alphonse","full_name":"Michael Alphonse, Juno Felecia","first_name":"Juno Felecia"},{"first_name":"Visotheary","full_name":"Ung, Visotheary","last_name":"Ung"},{"first_name":"Sara","full_name":"El-Gebali, Sara","last_name":"El-Gebali"},{"last_name":"Currin","id":"e8321fc5-3091-11eb-8a53-83f309a11ac9","orcid":"0000-0002-4809-5059","first_name":"Christopher","full_name":"Currin, Christopher"},{"last_name":"Plomp","first_name":"Esther","full_name":"Plomp, Esther"},{"last_name":"Thompson","full_name":"Thompson, Rachel","first_name":"Rachel"},{"full_name":"Sharan, Malvika","first_name":"Malvika","last_name":"Sharan"}],"abstract":[{"text":"Inclusion at academic events is facing increased scrutiny as the communities these events serve raise their expectations for who can practically attend. Active efforts in recent years to bring more diversity to academic events have brought progress and created momentum. However, we must reflect on these efforts and determine which underrepresented groups are being disadvantaged. Inclusion at academic events is important to ensure diversity of discourse and opinion, to help build networks, and to avoid academic siloing. All of these contribute to the development of a robust and resilient academic field. We have developed these Ten Simple Rules both to amplify the voices that have been speaking out and to celebrate the progress of many Equity, Diversity, and Inclusivity practices that continue to drive the organisation of academic events. The Rules aim to raise awareness as well as provide actionable suggestions and tools to support these initiatives further. This aims to support academic organisations such as the Deep Learning Indaba, Neuromatch Academy, the IBRO-Simons Computational Neuroscience Imbizo, Biodiversity Information Standards (TDWG), Arabs in Neuroscience, FAIRPoints, and OLS (formerly Open Life Science). This article is a call to action for organisers to reevaluate the impact and reach of their inclusive practices.","lang":"eng"}],"day":"01","doi":"10.1371/journal.pcbi.1011797","article_type":"original","issue":"3","acknowledgement":"We would like to recognise the feedback and ideas shared with us by all attendees during the\r\nfocus groups that contributed to the development of this paper. Acknowledgements are given\r\nto Elisee Jafsia, Umar Farouk Ahmad, Zohra Slim, Mizanur Rahman, Rev. Katie Tupling,\r\nChristopher Emmanuel, Abdalrhman Mostafa, Pradeep Eranti, Toby Hodges, Avishkar\r\nBhoopchand, and Carolyn Dickson. We would like to thank our community members and\r\nacknowledge their bravery for sharing their stories that shaped the narrative of these Ten Simple\r\nRules. The stories shared with us formed the case studies, and while they are anonymous\r\nfor privacy and protection reasons, it is these stories that were on our mind during the entire\r\nprocess and kept us going. We acknowledge the efforts of the organisers that contribute to the\r\nhighly successful events that are the inspiration for the ideas presented here: the Deep\r\nLearning Indaba, Neuromatch Academy, the IBRO Simons Computational Neuroscience\r\nImbizo, and OLS. OLS also supported this project through their mentorship programme,\r\nOpen Seeds.","intvolume":" 20","date_created":"2024-04-02T11:37:32Z","year":"2024","publication_identifier":{"issn":["1553-7358"]},"external_id":{"pmid":["38427633"],"isi":["001181690200005"]},"pmid":1,"title":"Ten simple rules for pushing boundaries of inclusion at academic events","has_accepted_license":"1","citation":{"ama":"Hall SM, Kochin D, Carne C, et al. Ten simple rules for pushing boundaries of inclusion at academic events. PLOS Computational Biology. 2024;20(3). doi:10.1371/journal.pcbi.1011797","mla":"Hall, Siobhan Mackenzie, et al. “Ten Simple Rules for Pushing Boundaries of Inclusion at Academic Events.” PLOS Computational Biology, vol. 20, no. 3, e1011797, Public Library of Science, 2024, doi:10.1371/journal.pcbi.1011797.","short":"S.M. Hall, D. Kochin, C. Carne, P. Herterich, K.L. Lewers, M. Abdelhack, A. Ramasubramanian, J.F. Michael Alphonse, V. Ung, S. El-Gebali, C. Currin, E. Plomp, R. Thompson, M. Sharan, PLOS Computational Biology 20 (2024).","apa":"Hall, S. M., Kochin, D., Carne, C., Herterich, P., Lewers, K. L., Abdelhack, M., … Sharan, M. (2024). Ten simple rules for pushing boundaries of inclusion at academic events. PLOS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1011797","chicago":"Hall, Siobhan Mackenzie, Daniel Kochin, Carmel Carne, Patricia Herterich, Kristen Lenay Lewers, Mohamed Abdelhack, Arun Ramasubramanian, et al. “Ten Simple Rules for Pushing Boundaries of Inclusion at Academic Events.” PLOS Computational Biology. Public Library of Science, 2024. https://doi.org/10.1371/journal.pcbi.1011797.","ieee":"S. M. Hall et al., “Ten simple rules for pushing boundaries of inclusion at academic events,” PLOS Computational Biology, vol. 20, no. 3. Public Library of Science, 2024.","ista":"Hall SM, Kochin D, Carne C, Herterich P, Lewers KL, Abdelhack M, Ramasubramanian A, Michael Alphonse JF, Ung V, El-Gebali S, Currin C, Plomp E, Thompson R, Sharan M. 2024. Ten simple rules for pushing boundaries of inclusion at academic events. PLOS Computational Biology. 20(3), e1011797."},"DOAJ_listed":"1","file":[{"checksum":"1f0f837c5b4341f54f6347370ed8c1b7","access_level":"open_access","relation":"main_file","file_id":"15289","date_created":"2024-04-03T13:29:36Z","content_type":"application/pdf","file_name":"2024_PloS_Hall.pdf","creator":"dernst","success":1,"date_updated":"2024-04-03T13:29:36Z","file_size":858521}],"article_processing_charge":"Yes","publisher":"Public Library of Science","file_date_updated":"2024-04-03T13:29:36Z","ddc":["000"]},{"scopus_import":"1","type":"journal_article","department":[{"_id":"TiVo"}],"language":[{"iso":"eng"}],"publication":"Comprehensive Psychiatry","article_number":"152479","quality_controlled":"1","_id":"15295","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Published Version","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","OA_type":"gold","isi":1,"volume":132,"publication_status":"published","month":"07","status":"public","date_updated":"2025-09-04T13:30:08Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"doi":"10.1016/j.comppsych.2024.152479","article_type":"original","date_published":"2024-07-01T00:00:00Z","author":[{"last_name":"Beyer","full_name":"Beyer, Chad","first_name":"Chad"},{"full_name":"Currin, Christopher","first_name":"Christopher","orcid":"0000-0002-4809-5059","id":"e8321fc5-3091-11eb-8a53-83f309a11ac9","last_name":"Currin"},{"full_name":"Williams, Taryn","first_name":"Taryn","last_name":"Williams"},{"full_name":"Stein, Dan J.","first_name":"Dan J.","last_name":"Stein"}],"oa":1,"abstract":[{"lang":"eng","text":"Background: Benzodiazepines and antidepressants are effective agents for the treatment of generalized anxiety disorder (GAD), with the HAM-A frequently used as a primary outcome measure. The GAD literature is inconsistent regarding which medications are more effective for somatic versus psychic symptoms of GAD, and treatment guidelines do not advocate for prescribing based on subtype. This meta-analysis aimed to determine whether benzodiazepines and antidepressants have a differential impact on the somatic versus psychic subscales of the HAM-A in GAD.\r\n\r\nMethods: An electronic search was undertaken for randomized controlled trials of either benzodiazepines or antidepressants for GAD that reported treatment response using the HAM-A subscales. Data were extracted by independent reviewers. A random effects assessment of weighted mean difference with 95% confidence intervals and subgroup difference was applied. All analysis was done on SPSS 26. An assessment of bias, and of quality of evidence was performed.\r\n\r\nResults: 24 randomized controlled trials met the inclusion criteria: 18 antidepressant trials, 5 benzodiazepine trials and 1 of both. 14 studies were assessed as having between some and high risk of bias, while 10 were assessed as having low risk of bias. Benzodiazepines (WMD of 1.81 [CI 1.03, 2.58]) were significantly more effective than antidepressants (WMD of 0.83 [CI 0.64, 1.02]) for reducing somatic symptoms of GAD (Chi2 = 5.81, p = 0.02), and were also more effective (WMD of 2.46 [CI 1.83, 3.09]) in reducing psychic symptoms than antidepressants (WMD of 1.83 [CI 1.55, 2.10]), although this comparison did not reach statistical significance (Chi2 = 3.31, p = 0.07).\r\n\r\nConclusion: The finding that benzodiazepines were significantly more effective than antidepressants for somatic symptoms needs to be weighed up against potential benefits of antidepressants over benzodiazepines. It may be useful for future treatment guidelines for GAD to explicitly consider symptom subtype."}],"day":"01","DOAJ_listed":"1","citation":{"ieee":"C. Beyer, C. Currin, T. Williams, and D. J. Stein, “Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder,” Comprehensive Psychiatry, vol. 132. Elsevier, 2024.","ista":"Beyer C, Currin C, Williams T, Stein DJ. 2024. Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder. Comprehensive Psychiatry. 132, 152479.","chicago":"Beyer, Chad, Christopher Currin, Taryn Williams, and Dan J. Stein. “Meta-Analysis of the Comparative Efficacy of Benzodiazepines and Antidepressants for Psychic versus Somatic Symptoms of Generalized Anxiety Disorder.” Comprehensive Psychiatry. Elsevier, 2024. https://doi.org/10.1016/j.comppsych.2024.152479.","apa":"Beyer, C., Currin, C., Williams, T., & Stein, D. J. (2024). Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder. Comprehensive Psychiatry. Elsevier. https://doi.org/10.1016/j.comppsych.2024.152479","short":"C. Beyer, C. Currin, T. Williams, D.J. Stein, Comprehensive Psychiatry 132 (2024).","ama":"Beyer C, Currin C, Williams T, Stein DJ. Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder. Comprehensive Psychiatry. 2024;132. doi:10.1016/j.comppsych.2024.152479","mla":"Beyer, Chad, et al. “Meta-Analysis of the Comparative Efficacy of Benzodiazepines and Antidepressants for Psychic versus Somatic Symptoms of Generalized Anxiety Disorder.” Comprehensive Psychiatry, vol. 132, 152479, Elsevier, 2024, doi:10.1016/j.comppsych.2024.152479."},"file":[{"file_id":"18839","relation":"main_file","checksum":"aadb57448b5f170761ed72cbcc31ba16","access_level":"open_access","file_size":2874425,"date_updated":"2025-01-13T10:47:20Z","file_name":"2024_ComprehensivePsychiatry_Beyer.pdf","success":1,"creator":"dernst","content_type":"application/pdf","date_created":"2025-01-13T10:47:20Z"}],"article_processing_charge":"Yes","publisher":"Elsevier","ddc":["570"],"file_date_updated":"2025-01-13T10:47:20Z","date_created":"2024-04-07T22:00:55Z","year":"2024","intvolume":" 132","external_id":{"isi":["001221136000001"],"pmid":["38564872"]},"publication_identifier":{"issn":["0010-440X"],"eissn":["1532-8384"]},"title":"Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder","pmid":1,"has_accepted_license":"1"},{"type":"conference","department":[{"_id":"UlWa"}],"issue":"1","doi":"10.1063/5.0195908","scopus_import":"1","abstract":[{"lang":"eng","text":"In this paper we build a constructive algorithm that returns a rectifiable curve that connects two points in a weakly convex set in a Hilbert space. We have proven that this algorithm converges and obtained an estimate on the curve’s length and compare the length of the curve obtained to known results."}],"conference":{"start_date":"2022-10-26","location":"Virtual","end_date":"2022-10-29","name":"ICCMSE: International Conference of Computational Methods in Sciences and Engiineering"},"publication":"AIP Conference Proceedings","day":"14","date_published":"2024-03-14T00:00:00Z","author":[{"last_name":"Lopushanski","full_name":"Lopushanski, Mariana","first_name":"Mariana"},{"first_name":"Grigory","full_name":"Ivanov, Grigory","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E","last_name":"Ivanov"}],"language":[{"iso":"eng"}],"_id":"15296","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"080002","quality_controlled":"1","citation":{"mla":"Lopushanski, Mariana, and Grigory Ivanov. “A Constructive Algorithm for Building Rectifiable Curves in Weakly Convex Sets.” AIP Conference Proceedings, vol. 3030, no. 1, 080002, AIP Publishing, 2024, doi:10.1063/5.0195908.","ama":"Lopushanski M, Ivanov G. A constructive algorithm for building rectifiable curves in weakly convex sets. In: AIP Conference Proceedings. Vol 3030. AIP Publishing; 2024. doi:10.1063/5.0195908","short":"M. Lopushanski, G. Ivanov, in:, AIP Conference Proceedings, AIP Publishing, 2024.","chicago":"Lopushanski, Mariana, and Grigory Ivanov. “A Constructive Algorithm for Building Rectifiable Curves in Weakly Convex Sets.” In AIP Conference Proceedings, Vol. 3030. AIP Publishing, 2024. https://doi.org/10.1063/5.0195908.","apa":"Lopushanski, M., & Ivanov, G. (2024). A constructive algorithm for building rectifiable curves in weakly convex sets. In AIP Conference Proceedings (Vol. 3030). Virtual: AIP Publishing. https://doi.org/10.1063/5.0195908","ieee":"M. Lopushanski and G. Ivanov, “A constructive algorithm for building rectifiable curves in weakly convex sets,” in AIP Conference Proceedings, Virtual, 2024, vol. 3030, no. 1.","ista":"Lopushanski M, Ivanov G. 2024. A constructive algorithm for building rectifiable curves in weakly convex sets. AIP Conference Proceedings. ICCMSE: International Conference of Computational Methods in Sciences and Engiineering vol. 3030, 080002."},"publisher":"AIP Publishing","article_processing_charge":"No","date_updated":"2024-04-08T07:40:53Z","status":"public","title":"A constructive algorithm for building rectifiable curves in weakly convex sets","year":"2024","date_created":"2024-04-07T22:00:55Z","intvolume":" 3030","publication_status":"published","volume":3030,"month":"03","publication_identifier":{"eissn":["1551-7616"],"issn":["0094-243X"]}},{"ec_funded":1,"scopus_import":"1","corr_author":"1","type":"journal_article","OA_place":"publisher","APC_amount":"3149,96 EUR","department":[{"_id":"KrCh"}],"language":[{"iso":"eng"}],"publication":"PLoS Computational Biology","project":[{"call_identifier":"H2020","grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"quality_controlled":"1","article_number":"e1012008","related_material":{"record":[{"id":"20138","status":"public","relation":"dissertation_contains"}]},"_id":"15297","oa_version":"Published Version","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"gold","volume":20,"publication_status":"published","month":"03","isi":1,"status":"public","date_updated":"2026-04-07T11:49:11Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1371/journal.pcbi.1012008","article_type":"original","issue":"3","acknowledgement":"We thank Gavin Rees for helpful discussions. J.S., S.J., and K.C were supported by\r\nEuropean Research Council (ERC) CoG 863818 (ForM-SMArt). J.T was supported by Center for Foundations of Modern Computer Science (Charles University project UNCE/SCI/004) and by the project PRIMUS/24/SCI/012 from Charles University. ","date_published":"2024-03-29T00:00:00Z","oa":1,"author":[{"orcid":"0000-0002-1419-3267","full_name":"Svoboda, Jakub","first_name":"Jakub","last_name":"Svoboda","id":"130759D2-D7DD-11E9-87D2-DE0DE6697425"},{"first_name":"Soham Shrikant","full_name":"Joshi, Soham Shrikant","id":"f97aac0e-f57c-11ee-93d0-a5a82d8df168","last_name":"Joshi"},{"last_name":"Tkadlec","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1097-9684","full_name":"Tkadlec, Josef","first_name":"Josef"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X"}],"arxiv":1,"abstract":[{"lang":"eng","text":"Populations evolve by accumulating advantageous mutations. Every population has some spatial structure that can be modeled by an underlying network. The network then influences the probability that new advantageous mutations fixate. Amplifiers of selection are networks that increase the fixation probability of advantageous mutants, as compared to the unstructured fully-connected network. Whether or not a network is an amplifier depends on the choice of the random process that governs the evolutionary dynamics. Two popular choices are Moran process with Birth-death updating and Moran process with death-Birth updating. Interestingly, while some networks are amplifiers under Birth-death updating and other networks are amplifiers under death-Birth updating, so far no spatial structures have been found that function as an amplifier under both types of updating simultaneously. In this work, we identify networks that act as amplifiers of selection under both versions of the Moran process. The amplifiers are robust, modular, and increase fixation probability for any mutant fitness advantage in a range r ∈ (1, 1.2). To complement this positive result, we also prove that for certain quantities closely related to fixation probability, it is impossible to improve them simultaneously for both versions of the Moran process. Together, our results highlight how the two versions of the Moran process differ and what they have in common."}],"day":"29","citation":{"chicago":"Svoboda, Jakub, Soham Shrikant Joshi, Josef Tkadlec, and Krishnendu Chatterjee. “Amplifiers of Selection for the Moran Process with Both Birth-Death and Death-Birth Updating.” PLoS Computational Biology. Public Library of Science, 2024. https://doi.org/10.1371/journal.pcbi.1012008.","apa":"Svoboda, J., Joshi, S. S., Tkadlec, J., & Chatterjee, K. (2024). Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1012008","ista":"Svoboda J, Joshi SS, Tkadlec J, Chatterjee K. 2024. Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating. PLoS Computational Biology. 20(3), e1012008.","ieee":"J. Svoboda, S. S. Joshi, J. Tkadlec, and K. Chatterjee, “Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating,” PLoS Computational Biology, vol. 20, no. 3. Public Library of Science, 2024.","mla":"Svoboda, Jakub, et al. “Amplifiers of Selection for the Moran Process with Both Birth-Death and Death-Birth Updating.” PLoS Computational Biology, vol. 20, no. 3, e1012008, Public Library of Science, 2024, doi:10.1371/journal.pcbi.1012008.","ama":"Svoboda J, Joshi SS, Tkadlec J, Chatterjee K. Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating. PLoS Computational Biology. 2024;20(3). doi:10.1371/journal.pcbi.1012008","short":"J. Svoboda, S.S. Joshi, J. Tkadlec, K. Chatterjee, PLoS Computational Biology 20 (2024)."},"DOAJ_listed":"1","article_processing_charge":"Yes","file":[{"checksum":"a511cf369d9172beb123fe73f291b5cc","access_level":"open_access","relation":"main_file","file_id":"17450","date_created":"2024-08-20T10:52:28Z","content_type":"application/pdf","success":1,"file_name":"2024_PloSComBio_Svoboda.pdf","creator":"dernst","date_updated":"2024-08-20T10:52:28Z","file_size":1425292}],"publisher":"Public Library of Science","file_date_updated":"2024-08-20T10:52:28Z","ddc":["000"],"intvolume":" 20","date_created":"2024-04-07T22:00:55Z","year":"2024","publication_identifier":{"eissn":["1553-7358"],"issn":["1553-734X"]},"external_id":{"arxiv":["2401.14914"],"isi":["001194482400002"]},"title":"Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating","has_accepted_license":"1"},{"type":"journal_article","department":[{"_id":"FrPe"}],"scopus_import":"1","publication":"Geo-Spatial Information Science","language":[{"iso":"eng"}],"_id":"15298","page":"703-727","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Published Version","quality_controlled":"1","status":"public","date_updated":"2025-09-04T13:28:38Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publication_status":"published","volume":27,"month":"03","isi":1,"article_type":"original","issue":"3","acknowledgement":"This work was supported by the ESA and NRSCC Dragon 5 cooperation project “Cryosphere-hydrosphere interactions of the Asian water towers: using remote sensing to drive hyper-resolution ecohydrological modelling” [Grant no. 59199]. PB and FP acknowledge funding from the SNSF (High-elevation precipitation in High Mountain Asia, HOPE)) [Grant no. 183633]. ESM, MK, SFu and FP acknowledge funding from the ERC under the European Union’s Horizon 2020 research and innovation program (Rapid mass losses of debris-covered glaciers in High Mountain Asia, RAVEN) [Grant no. 772751]. LJ, CZ and MMe acknowledge the Second Tibetan Plateau Scientific Expedition and Research Program (STEP) [grant no. 2019QZKK010308, no. 2019QZKK0206], the National Natural Science Foundation of China projects (Grant no. 42171039, no. 91737205), the Chinese Academy of Sciences President’s International Fellowship Initiative [Grant no. 2020VTA0001], and the MOST High-Level Foreign Expert Program [Grant no. G2022055010L].","doi":"10.1080/10095020.2024.2330546","abstract":[{"lang":"eng","text":"Mountains are important suppliers of freshwater to downstream areas, affecting large populations in particular in High Mountain Asia (HMA). Yet, the propagation of water from HMA headwaters to downstream areas is not fully understood, as interactions in the mountain water cycle between the cryo-, hydro- and biosphere remain elusive. We review the definition of blue and green water fluxes as liquid water that contributes to runoff at the outlet of the selected domain (blue) and water lost to the atmosphere through vapor fluxes, that is evaporation from water, ground, and interception plus transpiration (green) and propose to add the term white water to account for the (often neglected) evaporation and sublimation from snow and ice. We provide an assessment of models that can simulate the cryo-hydro-biosphere continuum and the interactions between spheres in high mountain catchments, going beyond disciplinary separations. Land surface models are uniquely able to account for such complexity, since they solve the coupled fluxes of water, energy, and carbon between the land surface and atmosphere. Due to the mechanistic nature of such models, specific variables can be compared systematically to independent remote sensing observations – providing vital insights into model accuracy and enabling the understanding of the complex watersheds of HMA. We discuss recent developments in spaceborne earth observation products that have the potential to support catchment modeling in high mountain regions. We then present a pilot study application of the mechanistic land surface model Tethys & Chloris to a glacierized watershed in the Nepalese Himalayas and discuss the use of high-resolution earth observation data to constrain the meteorological forcing uncertainty and validate model results. We use these insights to highlight the remaining challenges and future opportunities that remote sensing data presents for land surface modeling in HMA."}],"day":"22","date_published":"2024-03-22T00:00:00Z","oa":1,"author":[{"last_name":"Buri","first_name":"Pascal","full_name":"Buri, Pascal"},{"full_name":"Fatichi, Simone","first_name":"Simone","last_name":"Fatichi"},{"id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","last_name":"Shaw","full_name":"Shaw, Thomas","first_name":"Thomas","orcid":"0000-0001-7640-6152"},{"first_name":"Catriona Louise","full_name":"Fyffe, Catriona Louise","id":"001b0422-8d15-11ed-bc51-cab6c037a228","last_name":"Fyffe"},{"last_name":"Miles","first_name":"Evan S.","full_name":"Miles, Evan S."},{"full_name":"Mccarthy, Michael","first_name":"Michael","id":"22a2674a-61ce-11ee-94b5-d18813baf16f","last_name":"Mccarthy"},{"full_name":"Kneib, Marin","first_name":"Marin","last_name":"Kneib"},{"first_name":"Shaoting","full_name":"Ren, Shaoting","last_name":"Ren"},{"last_name":"Jouberton","first_name":"Achille","full_name":"Jouberton, Achille"},{"last_name":"Fugger","first_name":"Stefan","full_name":"Fugger, Stefan"},{"full_name":"Jia, Li","first_name":"Li","last_name":"Jia"},{"full_name":"Zhang, Jing","first_name":"Jing","last_name":"Zhang"},{"full_name":"Shen, Cong","first_name":"Cong","last_name":"Shen"},{"first_name":"Chaolei","full_name":"Zheng, Chaolei","last_name":"Zheng"},{"full_name":"Menenti, Massimo","first_name":"Massimo","last_name":"Menenti"},{"last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","orcid":"0000-0002-5554-8087","first_name":"Francesca","full_name":"Pellicciotti, Francesca"}],"ddc":["550"],"file_date_updated":"2024-07-29T11:34:54Z","citation":{"ama":"Buri P, Fatichi S, Shaw T, et al. Land surface modeling informed by earth observation data: Toward understanding blue–green–white water fluxes in High Mountain Asia. Geo-Spatial Information Science. 2024;27(3):703-727. doi:10.1080/10095020.2024.2330546","mla":"Buri, Pascal, et al. “Land Surface Modeling Informed by Earth Observation Data: Toward Understanding Blue–Green–White Water Fluxes in High Mountain Asia.” Geo-Spatial Information Science, vol. 27, no. 3, Taylor & Francis, 2024, pp. 703–27, doi:10.1080/10095020.2024.2330546.","short":"P. Buri, S. Fatichi, T. Shaw, C.L. Fyffe, E.S. Miles, M. McCarthy, M. Kneib, S. Ren, A. Jouberton, S. Fugger, L. Jia, J. Zhang, C. Shen, C. Zheng, M. Menenti, F. Pellicciotti, Geo-Spatial Information Science 27 (2024) 703–727.","apa":"Buri, P., Fatichi, S., Shaw, T., Fyffe, C. L., Miles, E. S., McCarthy, M., … Pellicciotti, F. (2024). Land surface modeling informed by earth observation data: Toward understanding blue–green–white water fluxes in High Mountain Asia. Geo-Spatial Information Science. Taylor & Francis. https://doi.org/10.1080/10095020.2024.2330546","chicago":"Buri, Pascal, Simone Fatichi, Thomas Shaw, Catriona Louise Fyffe, Evan S. Miles, Michael McCarthy, Marin Kneib, et al. “Land Surface Modeling Informed by Earth Observation Data: Toward Understanding Blue–Green–White Water Fluxes in High Mountain Asia.” Geo-Spatial Information Science. Taylor & Francis, 2024. https://doi.org/10.1080/10095020.2024.2330546.","ista":"Buri P, Fatichi S, Shaw T, Fyffe CL, Miles ES, McCarthy M, Kneib M, Ren S, Jouberton A, Fugger S, Jia L, Zhang J, Shen C, Zheng C, Menenti M, Pellicciotti F. 2024. Land surface modeling informed by earth observation data: Toward understanding blue–green–white water fluxes in High Mountain Asia. Geo-Spatial Information Science. 27(3), 703–727.","ieee":"P. Buri et al., “Land surface modeling informed by earth observation data: Toward understanding blue–green–white water fluxes in High Mountain Asia,” Geo-Spatial Information Science, vol. 27, no. 3. Taylor & Francis, pp. 703–727, 2024."},"publisher":"Taylor & Francis","article_processing_charge":"Yes","file":[{"date_updated":"2024-07-29T11:34:54Z","file_size":15678450,"content_type":"application/pdf","success":1,"file_name":"2024_GeoSpatialInfo_Buri.pdf","creator":"dernst","date_created":"2024-07-29T11:34:54Z","file_id":"17342","access_level":"open_access","checksum":"afbfc4e9f1bf2a00711efc30ad667c40","relation":"main_file"}],"title":"Land surface modeling informed by earth observation data: Toward understanding blue–green–white water fluxes in High Mountain Asia","has_accepted_license":"1","intvolume":" 27","date_created":"2024-04-07T22:00:56Z","year":"2024","publication_identifier":{"issn":["1009-5020"]},"external_id":{"isi":["001189470100001"]}},{"file_date_updated":"2024-08-20T11:22:16Z","ddc":["570"],"citation":{"short":"L. Hörmayer, J.C. Montesinos López, N. Trozzi, L. Spona, S. Yoshida, P. Marhavá, S. Caballero Mancebo, E. Benková, C.-P.J. Heisenberg, Y. Dagdas, M. Majda, J. Friml, Developmental Cell 59 (2024) 1333–1344.e4.","ama":"Hörmayer L, Montesinos López JC, Trozzi N, et al. Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization. Developmental Cell. 2024;59(10):1333-1344.e4. doi:10.1016/j.devcel.2024.03.009","mla":"Hörmayer, Lukas, et al. “Mechanical Forces in Plant Tissue Matrix Orient Cell Divisions via Microtubule Stabilization.” Developmental Cell, vol. 59, no. 10, Elsevier, 2024, p. 1333–1344.e4, doi:10.1016/j.devcel.2024.03.009.","ieee":"L. Hörmayer et al., “Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization,” Developmental Cell, vol. 59, no. 10. Elsevier, p. 1333–1344.e4, 2024.","ista":"Hörmayer L, Montesinos López JC, Trozzi N, Spona L, Yoshida S, Marhavá P, Caballero Mancebo S, Benková E, Heisenberg C-PJ, Dagdas Y, Majda M, Friml J. 2024. Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization. Developmental Cell. 59(10), 1333–1344.e4.","apa":"Hörmayer, L., Montesinos López, J. C., Trozzi, N., Spona, L., Yoshida, S., Marhavá, P., … Friml, J. (2024). Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization. Developmental Cell. Elsevier. https://doi.org/10.1016/j.devcel.2024.03.009","chicago":"Hörmayer, Lukas, Juan C Montesinos López, N Trozzi, Leonhard Spona, Saiko Yoshida, Petra Marhavá, Silvia Caballero Mancebo, et al. “Mechanical Forces in Plant Tissue Matrix Orient Cell Divisions via Microtubule Stabilization.” Developmental Cell. Elsevier, 2024. https://doi.org/10.1016/j.devcel.2024.03.009."},"publisher":"Elsevier","file":[{"file_id":"17452","access_level":"open_access","checksum":"22b374fb50a40d380b7686c84258d271","relation":"main_file","file_size":5195262,"date_updated":"2024-08-20T11:22:16Z","content_type":"application/pdf","file_name":"2024_DevelopmentalCell_Hoermayer.pdf","success":1,"creator":"dernst","date_created":"2024-08-20T11:22:16Z"}],"article_processing_charge":"Yes (via OA deal)","title":"Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization","pmid":1,"has_accepted_license":"1","intvolume":" 59","year":"2024","date_created":"2024-04-08T12:07:57Z","publication_identifier":{"eissn":["1878-1551"],"issn":["1534-5807"]},"external_id":{"pmid":["38579717"],"isi":["001301584600001"]},"article_type":"original","issue":"10","acknowledgement":"We are thankful to Simon Gilroy, Alexander Jones, and Lieven De Veylder for sharing published material. We thank the Imaging & Optics and Life Science Facilities at IST Austria, the Biooptics facility at GMI, and the Cellular Imaging Facility at DBMV UNIL for providing invaluable assistance. The research leading to these results has received funding from the European Research Council under the European Union's Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no. 742985, from the FWF under the stand-alone grant P29988, and from EMBO (ALTF 253-2023).","doi":"10.1016/j.devcel.2024.03.009","abstract":[{"text":"Plant morphogenesis relies exclusively on oriented cell expansion and division. Nonetheless, the mechanism(s) determining division plane orientation remain elusive. Here, we studied tissue healing after laser-assisted wounding in roots of Arabidopsis thaliana and uncovered how mechanical forces stabilize and reorient the microtubule cytoskeleton for the orientation of cell division. We identified that root tissue functions as an interconnected cell matrix, with a radial gradient of tissue extendibility causing predictable tissue deformation after wounding. This deformation causes instant redirection of expansion in the surrounding cells and reorientation of microtubule arrays, ultimately predicting cell division orientation. Microtubules are destabilized under low tension, whereas stretching of cells, either through wounding or external aspiration, immediately induces their polymerization. The higher microtubule abundance in the stretched cell parts leads to the reorientation of microtubule arrays and, ultimately, informs cell division planes. This provides a long-sought mechanism for flexible re-arrangement of cell divisions by mechanical forces for tissue reconstruction and plant architecture.","lang":"eng"}],"day":"20","date_published":"2024-05-20T00:00:00Z","oa":1,"author":[{"orcid":"0000-0001-8295-2926","first_name":"Lukas","full_name":"Hörmayer, Lukas","last_name":"Hörmayer","id":"2EEE7A2A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Montesinos López, Juan C","first_name":"Juan C","orcid":"0000-0001-9179-6099","id":"310A8E3E-F248-11E8-B48F-1D18A9856A87","last_name":"Montesinos López"},{"last_name":"Trozzi","full_name":"Trozzi, N","first_name":"N"},{"first_name":"Leonhard","full_name":"Spona, Leonhard","last_name":"Spona","id":"b52391fb-f636-11ee-939c-8a8c47552e8a"},{"first_name":"Saiko","full_name":"Yoshida, Saiko","id":"2E46069C-F248-11E8-B48F-1D18A9856A87","last_name":"Yoshida"},{"id":"44E59624-F248-11E8-B48F-1D18A9856A87","last_name":"Marhavá","first_name":"Petra","full_name":"Marhavá, Petra"},{"orcid":"0000-0002-5223-3346","full_name":"Caballero Mancebo, Silvia","first_name":"Silvia","last_name":"Caballero Mancebo","id":"2F1E1758-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-8510-9739","first_name":"Eva","full_name":"Benková, Eva","last_name":"Benková","id":"38F4F166-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Heisenberg","id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566","full_name":"Heisenberg, Carl-Philipp J","first_name":"Carl-Philipp J"},{"full_name":"Dagdas, Y","first_name":"Y","last_name":"Dagdas"},{"first_name":"M","full_name":"Majda, M","last_name":"Majda"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Friml, Jiří","first_name":"Jiří","orcid":"0000-0002-8302-7596"}],"_id":"15301","oa_version":"Published Version","page":"1333-1344.e4","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"quality_controlled":"1","related_material":{"link":[{"relation":"press_release","description":"News on ISTA website","url":"https://ista.ac.at/en/news/how-plants-heal-wounds/"}]},"date_updated":"2025-09-04T13:32:08Z","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"05","volume":59,"publication_status":"published","isi":1,"type":"journal_article","department":[{"_id":"JiFr"},{"_id":"EvBe"},{"_id":"CaHe"}],"ec_funded":1,"scopus_import":"1","corr_author":"1","publication":"Developmental Cell","project":[{"grant_number":"742985","call_identifier":"H2020","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants"},{"grant_number":"P29988","call_identifier":"FWF","_id":"262EF96E-B435-11E9-9278-68D0E5697425","name":"RNA-directed DNA methylation in plant development"}],"language":[{"iso":"eng"}]},{"oa":1,"author":[{"id":"54a2c730-803f-11ed-ab7e-95b29d2680e7","last_name":"Zeng","first_name":"Zezhu","full_name":"Zeng, Zezhu"},{"last_name":"Shen","first_name":"Xingchen","full_name":"Shen, Xingchen"},{"full_name":"Cheng, Ruihuan","first_name":"Ruihuan","last_name":"Cheng"},{"first_name":"Olivier","full_name":"Perez, Olivier","last_name":"Perez"},{"last_name":"Ouyang","full_name":"Ouyang, Niuchang","first_name":"Niuchang"},{"full_name":"Fan, Zheyong","first_name":"Zheyong","last_name":"Fan"},{"full_name":"Lemoine, Pierric","first_name":"Pierric","last_name":"Lemoine"},{"last_name":"Raveau","full_name":"Raveau, Bernard","first_name":"Bernard"},{"first_name":"Emmanuel","full_name":"Guilmeau, Emmanuel","last_name":"Guilmeau"},{"first_name":"Yue","full_name":"Chen, Yue","last_name":"Chen"}],"arxiv":1,"date_published":"2024-04-08T00:00:00Z","day":"08","abstract":[{"lang":"eng","text":"Materials with low thermal conductivity usually have complex crystal structures. Herein we experimentally find that a simple crystal structure material AgTlI2 (I4/mcm) owns an extremely low thermal conductivity of 0.25 W/mK at room temperature. To understand this anomaly, we perform in-depth theoretical studies based on ab initio molecular dynamics simulations and anharmonic lattice dynamics. We find that the unique atomic arrangement and weak chemical bonding provide a permissive environment for strong oscillations of Ag atoms, leading to a considerable rattling behaviour and giant lattice anharmonicity. This feature is also verified by the experimental probability density function refinement of single-crystal diffraction. The particularly strong anharmonicity breaks down the conventional phonon gas model, giving rise to non-negligible wavelike phonon behaviours in AgTlI2 at 300 K. Intriguingly, unlike many strongly anharmonic materials where a small propagative thermal conductivity is often accompanied by a large diffusive thermal conductivity, we find an unusual coexistence of ultralow propagative and diffusive thermal conductivities in AgTlI2 based on the thermal transport unified theory. This study underscores the potential of simple crystal structures in achieving low thermal conductivity and encourages further experimental research to enrich the family of materials with ultralow thermal conductivity."}],"doi":"10.1038/s41467-024-46799-3","acknowledgement":"We thank Bingqing Cheng (IST Austria) and Terumasa Tadano (NIMS\r\nJapan) for reading the manuscript and providing insightful comments.\r\nThis work is supported by the Research Grants Council of Hong Kong\r\n(C7002-22Y and 17318122). ZZ acknowledges the European Union’s\r\nHorizon 2020 research and innovation programme under the Marie\r\nSkłodowska-Curie grant agreement No. 101034413. XS acknowledges\r\nfunding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement\r\nNo. 101034329, and the WINNING Normandy Programme supported by\r\nthe Normandy Region. The computations were performed using\r\nresearch computing facilities offered by Information Technology Services, at the University of Hong Kong.","article_type":"original","publication_identifier":{"eissn":["2041-1723"]},"external_id":{"isi":["001198902100029"],"arxiv":["2310.01838"],"pmid":["38589376"]},"intvolume":" 15","year":"2024","date_created":"2024-04-14T22:01:00Z","has_accepted_license":"1","pmid":1,"title":"Pushing thermal conductivity to its lower limit in crystals with simple structures","file":[{"file_id":"15346","relation":"main_file","access_level":"open_access","checksum":"f81bd6ba42f740d060fb446eeebc1035","file_size":3049375,"date_updated":"2024-04-26T10:34:07Z","file_name":"2024_NatComm_Zeng.pdf","creator":"cchlebak","success":1,"content_type":"application/pdf","date_created":"2024-04-26T10:34:07Z"}],"publisher":"Springer Nature","article_processing_charge":"Yes","citation":{"ama":"Zeng Z, Shen X, Cheng R, et al. Pushing thermal conductivity to its lower limit in crystals with simple structures. Nature Communications. 2024;15. doi:10.1038/s41467-024-46799-3","mla":"Zeng, Zezhu, et al. “Pushing Thermal Conductivity to Its Lower Limit in Crystals with Simple Structures.” Nature Communications, vol. 15, 3007, Springer Nature, 2024, doi:10.1038/s41467-024-46799-3.","short":"Z. Zeng, X. Shen, R. Cheng, O. Perez, N. Ouyang, Z. Fan, P. Lemoine, B. Raveau, E. Guilmeau, Y. Chen, Nature Communications 15 (2024).","chicago":"Zeng, Zezhu, Xingchen Shen, Ruihuan Cheng, Olivier Perez, Niuchang Ouyang, Zheyong Fan, Pierric Lemoine, Bernard Raveau, Emmanuel Guilmeau, and Yue Chen. “Pushing Thermal Conductivity to Its Lower Limit in Crystals with Simple Structures.” Nature Communications. Springer Nature, 2024. https://doi.org/10.1038/s41467-024-46799-3.","apa":"Zeng, Z., Shen, X., Cheng, R., Perez, O., Ouyang, N., Fan, Z., … Chen, Y. (2024). Pushing thermal conductivity to its lower limit in crystals with simple structures. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-024-46799-3","ista":"Zeng Z, Shen X, Cheng R, Perez O, Ouyang N, Fan Z, Lemoine P, Raveau B, Guilmeau E, Chen Y. 2024. Pushing thermal conductivity to its lower limit in crystals with simple structures. Nature Communications. 15, 3007.","ieee":"Z. Zeng et al., “Pushing thermal conductivity to its lower limit in crystals with simple structures,” Nature Communications, vol. 15. Springer Nature, 2024."},"DOAJ_listed":"1","ddc":["530"],"file_date_updated":"2024-04-26T10:34:07Z","language":[{"iso":"eng"}],"project":[{"grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program"}],"publication":"Nature Communications","corr_author":"1","scopus_import":"1","ec_funded":1,"department":[{"_id":"BiCh"}],"OA_place":"publisher","type":"journal_article","month":"04","volume":15,"publication_status":"published","isi":1,"OA_type":"gold","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_updated":"2025-09-04T13:46:19Z","status":"public","quality_controlled":"1","article_number":"3007","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"15311","oa_version":"Published Version"},{"isi":1,"publication_status":"published","volume":261,"month":"08","OA_type":"hybrid","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_updated":"2025-09-04T13:47:43Z","status":"public","quality_controlled":"1","_id":"15312","page":"220-240","oa_version":"Published Version","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","language":[{"iso":"eng"}],"publication":"Journal of Number Theory","corr_author":"1","scopus_import":"1","department":[{"_id":"TiBr"}],"type":"journal_article","OA_place":"publisher","external_id":{"arxiv":["2305.15493"],"isi":["001220725000001"]},"publication_identifier":{"issn":["0022-314X"]},"year":"2024","date_created":"2024-04-14T22:01:00Z","intvolume":" 261","has_accepted_license":"1","title":"Square-free values of random polynomials","file":[{"access_level":"open_access","checksum":"614032802febde0aa8e904e9a8ef99ab","relation":"main_file","file_id":"18794","date_created":"2025-01-09T09:00:02Z","content_type":"application/pdf","creator":"dernst","file_name":"2024_JourNumberTheory_Browning.pdf","success":1,"date_updated":"2025-01-09T09:00:02Z","file_size":394850}],"publisher":"Elsevier","article_processing_charge":"No","citation":{"chicago":"Browning, Timothy D, and Igor E. Shparlinski. “Square-Free Values of Random Polynomials.” Journal of Number Theory. Elsevier, 2024. https://doi.org/10.1016/j.jnt.2024.02.013.","apa":"Browning, T. D., & Shparlinski, I. E. (2024). Square-free values of random polynomials. Journal of Number Theory. Elsevier. https://doi.org/10.1016/j.jnt.2024.02.013","ista":"Browning TD, Shparlinski IE. 2024. Square-free values of random polynomials. Journal of Number Theory. 261, 220–240.","ieee":"T. D. Browning and I. E. Shparlinski, “Square-free values of random polynomials,” Journal of Number Theory, vol. 261. Elsevier, pp. 220–240, 2024.","mla":"Browning, Timothy D., and Igor E. Shparlinski. “Square-Free Values of Random Polynomials.” Journal of Number Theory, vol. 261, Elsevier, 2024, pp. 220–40, doi:10.1016/j.jnt.2024.02.013.","ama":"Browning TD, Shparlinski IE. Square-free values of random polynomials. Journal of Number Theory. 2024;261:220-240. doi:10.1016/j.jnt.2024.02.013","short":"T.D. Browning, I.E. Shparlinski, Journal of Number Theory 261 (2024) 220–240."},"ddc":["510"],"file_date_updated":"2025-01-09T09:00:02Z","author":[{"last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","full_name":"Browning, Timothy D","first_name":"Timothy D"},{"full_name":"Shparlinski, Igor E.","first_name":"Igor E.","last_name":"Shparlinski"}],"arxiv":1,"oa":1,"date_published":"2024-08-01T00:00:00Z","day":"01","abstract":[{"lang":"eng","text":"The question of whether or not a given integral polynomial takes infinitely many square-free values has only been addressed unconditionally for polynomials of degree at most 3. We address this question, on average, for polynomials of arbitrary degree."}],"doi":"10.1016/j.jnt.2024.02.013","article_type":"original"},{"quality_controlled":"1","article_number":"108011","acknowledged_ssus":[{"_id":"ScienComp"}],"_id":"15313","oa_version":"Published Version","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication_status":"published","month":"07","volume":134,"isi":1,"OA_type":"hybrid","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","date_updated":"2025-09-04T13:37:48Z","corr_author":"1","scopus_import":"1","ec_funded":1,"department":[{"_id":"CaMu"}],"type":"journal_article","OA_place":"publisher","language":[{"iso":"eng"}],"project":[{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"},{"grant_number":"805041","call_identifier":"H2020","name":"Organization of CLoUdS, and implications of Tropical cyclones and for the Energetics of the tropics, in current and waRming climate","_id":"629205d8-2b32-11ec-9570-e1356ff73576"}],"publication":"Communications in Nonlinear Science and Numerical Simulation","file":[{"access_level":"open_access","checksum":"9b7c2b8281d0b7bc7f08e0468168324c","relation":"main_file","file_id":"18795","date_created":"2025-01-09T09:05:31Z","date_updated":"2025-01-09T09:05:31Z","file_size":1257925,"content_type":"application/pdf","success":1,"creator":"dernst","file_name":"2024_CommNonlinear_Agasthya.pdf"}],"publisher":"Elsevier","article_processing_charge":"Yes (via OA deal)","citation":{"short":"L.N. Agasthya, C.J. Muller, Communications in Nonlinear Science and Numerical Simulation 134 (2024).","ama":"Agasthya LN, Muller CJ. Dynamics and scaling of internally cooled convection. Communications in Nonlinear Science and Numerical Simulation. 2024;134. doi:10.1016/j.cnsns.2024.108011","mla":"Agasthya, Lokahith N., and Caroline J. Muller. “Dynamics and Scaling of Internally Cooled Convection.” Communications in Nonlinear Science and Numerical Simulation, vol. 134, 108011, Elsevier, 2024, doi:10.1016/j.cnsns.2024.108011.","ista":"Agasthya LN, Muller CJ. 2024. Dynamics and scaling of internally cooled convection. Communications in Nonlinear Science and Numerical Simulation. 134, 108011.","ieee":"L. N. Agasthya and C. J. Muller, “Dynamics and scaling of internally cooled convection,” Communications in Nonlinear Science and Numerical Simulation, vol. 134. Elsevier, 2024.","apa":"Agasthya, L. N., & Muller, C. J. (2024). Dynamics and scaling of internally cooled convection. Communications in Nonlinear Science and Numerical Simulation. Elsevier. https://doi.org/10.1016/j.cnsns.2024.108011","chicago":"Agasthya, Lokahith N, and Caroline J Muller. “Dynamics and Scaling of Internally Cooled Convection.” Communications in Nonlinear Science and Numerical Simulation. Elsevier, 2024. https://doi.org/10.1016/j.cnsns.2024.108011."},"ddc":["550"],"file_date_updated":"2025-01-09T09:05:31Z","publication_identifier":{"issn":["1007-5704"]},"external_id":{"isi":["001238294600001"],"arxiv":["2311.04114"]},"intvolume":" 134","date_created":"2024-04-14T22:01:01Z","year":"2024","has_accepted_license":"1","title":"Dynamics and scaling of internally cooled convection","doi":"10.1016/j.cnsns.2024.108011","acknowledgement":"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska–Curie grant agreement No. 101034413. CM gratefully acknowledges funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041). This research was supported by the Scientific Service Units (SSU) of IST Austria through resources provided by Scientific Computing (SciComp).","article_type":"original","oa":1,"arxiv":1,"author":[{"last_name":"Agasthya","id":"cd100965-0804-11ed-9c55-f4878ff4e877","first_name":"Lokahith N","full_name":"Agasthya, Lokahith N"},{"orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","first_name":"Caroline J","last_name":"Muller","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b"}],"date_published":"2024-07-01T00:00:00Z","day":"01","abstract":[{"lang":"eng","text":"Our goal is to investigate fundamental properties of the system of internally cooled convection. The system consists of an upward thermal flux at the lower boundary, a mean temperature lapse-rate and a constant cooling term in the bulk with the bulk cooling in thermal equilibrium with the input heat flux. This simple model represents idealised dry convection in the atmospheric boundary layer, where the cooling mimics the radiative cooling to space notably through longwave radiation. We perform linear stability analysis of the model for different values of the mean stratification to derive the critical forcing above which the fluid is convectively unstable to small perturbations. The dynamic behavior of the fluid system is described and the scaling of various important measured quantities such as the total vertical convective heat flux and the upward mass flux is measured. We introduce a lapse-rate dependent dimensionless Rayleigh-number Ray that determines the behavior of the system, finding that the convective heat-flux and mass-flux scale approximately as Ray0.5 and Ray0.7 respectively. The area-fraction of the domain that is occupied by upward and downward moving fluid and the skewness of the vertical velocity are studied to understand the asymmetry inherent in the system. We conclude with a short discussion on the relevance to atmospheric convection and the scope for further investigations of atmospheric convection using similar simplified approaches."}]},{"_id":"15314","oa_version":"None","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","quality_controlled":"1","article_number":"111464","date_updated":"2025-09-04T13:38:27Z","status":"public","month":"05","publication_status":"published","volume":88,"isi":1,"type":"journal_article","department":[{"_id":"MaIb"}],"scopus_import":"1","publication":"Journal of Energy Storage","language":[{"iso":"eng"}],"citation":{"ama":"Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material’s stability. Journal of Energy Storage. 2024;88. doi:10.1016/j.est.2024.111464","mla":"Mahato, Neelima, et al. “Polycrystalline Phases Engineered In-Situ in Polyaniline-Graphene Composite Evoluting an Exceptional Stability and High Charge Storage Capacity: An EIS Investigative Approach to Evaluate Material’s Stability.” Journal of Energy Storage, vol. 88, 111464, Elsevier, 2024, doi:10.1016/j.est.2024.111464.","short":"N. Mahato, S. Singh, T.V.M. Sreekanth, K. Yoo, J. Kim, Journal of Energy Storage 88 (2024).","apa":"Mahato, N., Singh, S., Sreekanth, T. V. M., Yoo, K., & Kim, J. (2024). Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material’s stability. Journal of Energy Storage. Elsevier. https://doi.org/10.1016/j.est.2024.111464","chicago":"Mahato, Neelima, Saurabh Singh, T. V.M. Sreekanth, Kisoo Yoo, and Jonghoon Kim. “Polycrystalline Phases Engineered In-Situ in Polyaniline-Graphene Composite Evoluting an Exceptional Stability and High Charge Storage Capacity: An EIS Investigative Approach to Evaluate Material’s Stability.” Journal of Energy Storage. Elsevier, 2024. https://doi.org/10.1016/j.est.2024.111464.","ista":"Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. 2024. Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material’s stability. Journal of Energy Storage. 88, 111464.","ieee":"N. Mahato, S. Singh, T. V. M. Sreekanth, K. Yoo, and J. Kim, “Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material’s stability,” Journal of Energy Storage, vol. 88. Elsevier, 2024."},"article_processing_charge":"No","publisher":"Elsevier","title":"Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material's stability","intvolume":" 88","date_created":"2024-04-14T22:01:01Z","year":"2024","publication_identifier":{"eissn":["2352-152X"]},"external_id":{"isi":["001287584100001"]},"article_type":"original","acknowledgement":"This work was supported by Korea Institute of Energy Technology Evaluation and Planning (KETEP); and Ministry of Trade, Industry & Energy (MOTIE), Republic of Korea (Grant No. \r\n20210501010020).","doi":"10.1016/j.est.2024.111464","abstract":[{"lang":"eng","text":"Development of electroactive materials exhibiting high performance with superior stability is crucial in the field of supercapacitors and battery research. We report on synthesis of highly stable composite of semi-polycrystalline polyaniline and graphene (SPani-graphene) and its application in supercapacitor electrodes. The electrochemical behavior and device performance of the electrodes were investigated through cyclic voltammetry (CV), galvanostatic charge-discharge GCD) and electrochemical impedance spectroscopy (EIS) in a 3-electrode and a 2-electrode (device) cell configurations, repectively. The cell specific capacitance (Cell Csp) achieved from the 2-electrode symmetric cell configuration was 525.5 F g−1 at 0.1 A g−1 using polymer gel electrolyte (PGE). The PGE in this work is xanthan gum jellied in 1 M aq. Na2SO4. The maximum energy density and power density achieved from the device was 46.7 Wh kg−1 and 16.16 kW kg−1, respectively, at 0.4 A g−1. Furthermore, the device exhibits an excellent retention of cell specific capacitance and coulombic efficiency of 97 % and 94 %, respectively, over 10,000 continuous GCD cycles, indicating an excellent rate capability as well as a promising power management. To investigate the material's electrochemical durability, a detailed EIS study has been carried out using both, 3-electrode, and 2-electrode cell configurations, before and after long cycling test (over 10,000 continuous GCD cycles). Our thorough experimentation delivers satisfactory results and has been explained in detail in the manuscript. Hereby, we propose that the EIS technique can be adopted for investigating materials' electrochemical stability, in addition to long CV and GCD cycles in the field of supercapacitors and battery research."}],"day":"30","date_published":"2024-05-30T00:00:00Z","author":[{"last_name":"Mahato","full_name":"Mahato, Neelima","first_name":"Neelima"},{"first_name":"Saurabh","full_name":"Singh, Saurabh","orcid":"0000-0003-2209-5269","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","last_name":"Singh"},{"last_name":"Sreekanth","full_name":"Sreekanth, T. V.M.","first_name":"T. V.M."},{"last_name":"Yoo","full_name":"Yoo, Kisoo","first_name":"Kisoo"},{"full_name":"Kim, Jonghoon","first_name":"Jonghoon","last_name":"Kim"}]},{"pmid":1,"title":"Learning dynamical models of single and collective cell migration: a review","has_accepted_license":"1","date_created":"2024-04-14T22:01:01Z","year":"2024","intvolume":" 87","external_id":{"isi":["001196692400001"],"arxiv":["2309.00545"],"pmid":["38518358"]},"publication_identifier":{"issn":["0034-4885"],"eissn":["1361-6633"]},"ddc":["530"],"file_date_updated":"2024-08-20T11:00:03Z","citation":{"ama":"Brückner D, Broedersz CP. Learning dynamical models of single and collective cell migration: a review. Reports on Progress in Physics. 2024;87(5). doi:10.1088/1361-6633/ad36d2","mla":"Brückner, David, and Chase P. Broedersz. “Learning Dynamical Models of Single and Collective Cell Migration: A Review.” Reports on Progress in Physics, vol. 87, no. 5, 056601, IOP Publishing, 2024, doi:10.1088/1361-6633/ad36d2.","short":"D. Brückner, C.P. Broedersz, Reports on Progress in Physics 87 (2024).","chicago":"Brückner, David, and Chase P. Broedersz. “Learning Dynamical Models of Single and Collective Cell Migration: A Review.” Reports on Progress in Physics. IOP Publishing, 2024. https://doi.org/10.1088/1361-6633/ad36d2.","apa":"Brückner, D., & Broedersz, C. P. (2024). Learning dynamical models of single and collective cell migration: a review. Reports on Progress in Physics. IOP Publishing. https://doi.org/10.1088/1361-6633/ad36d2","ista":"Brückner D, Broedersz CP. 2024. Learning dynamical models of single and collective cell migration: a review. Reports on Progress in Physics. 87(5), 056601.","ieee":"D. Brückner and C. P. Broedersz, “Learning dynamical models of single and collective cell migration: a review,” Reports on Progress in Physics, vol. 87, no. 5. IOP Publishing, 2024."},"article_processing_charge":"Yes (in subscription journal)","publisher":"IOP Publishing","file":[{"date_created":"2024-08-20T11:00:03Z","creator":"dernst","success":1,"file_name":"2024_ReportPhysics_Brueckner.pdf","content_type":"application/pdf","file_size":4376898,"date_updated":"2024-08-20T11:00:03Z","relation":"main_file","access_level":"open_access","checksum":"c5910078230ade20f4dd83592e862a72","file_id":"17451"}],"abstract":[{"lang":"eng","text":"Single and collective cell migration are fundamental processes critical for physiological phenomena ranging from embryonic development and immune response to wound healing and cancer metastasis. To understand cell migration from a physical perspective, a broad variety of models for the underlying physical mechanisms that govern cell motility have been developed. A key challenge in the development of such models is how to connect them to experimental observations, which often exhibit complex stochastic behaviours. In this review, we discuss recent advances in data-driven theoretical approaches that directly connect with experimental data to infer dynamical models of stochastic cell migration. Leveraging advances in nanofabrication, image analysis, and tracking technology, experimental studies now provide unprecedented large datasets on cellular dynamics. In parallel, theoretical efforts have been directed towards integrating such datasets into physical models from the single cell to the tissue scale with the aim of conceptualising the emergent behaviour of cells. We first review how this inference problem has been addressed in both freely migrating and confined cells. Next, we discuss why these dynamics typically take the form of underdamped stochastic equations of motion, and how such equations can be inferred from data. We then review applications of data-driven inference and machine learning approaches to heterogeneity in cell behaviour, subcellular degrees of freedom, and to the collective dynamics of multicellular systems. Across these applications, we emphasise how data-driven methods can be integrated with physical active matter models of migrating cells, and help reveal how underlying molecular mechanisms control cell behaviour. Together, these data-driven approaches are a promising avenue for building physical models of cell migration directly from experimental data, and for providing conceptual links between different length-scales of description."}],"day":"04","date_published":"2024-04-04T00:00:00Z","arxiv":1,"author":[{"first_name":"David","full_name":"Brückner, David","orcid":"0000-0001-7205-2975","id":"e1e86031-6537-11eb-953a-f7ab92be508d","last_name":"Brückner"},{"last_name":"Broedersz","full_name":"Broedersz, Chase P.","first_name":"Chase P."}],"oa":1,"article_type":"review","acknowledgement":"This work was supported by the Deutsche Forschungsgemeinschaft (German Research Foundation)—Project-ID 201269156—SFB 1032 (Project B12). D B B was supported by an NOMIS Fellowship and an EMBO Fellowship (ALTF 343-2022). We thank Joachim Rädler, Alexandra Fink, Erwin Frey, Pierre Ronceray, Ricard Alert, Edouard Hannezo, Henrik Flyvbjerg, Ulrich Schwarz, Joshua Shaevitz, Greg Stephens, Andrea Cavagna, Grzegorz Gradziuk, Fridtjof Brauns, Nikolas Claussen, Tom Brandstätter, Johannes Flommersfeld, Christoph Schreiber, Nicolas Arlt, Matthew Schmitt, Joris Messelink, Federico Gnesotto, Federica Mura, Bram Hoogland, Manon Wigbers, Isabella Graf, Jessica Lober, and many others for inspiring discussions. We also thank Claudia Flandoli for the artwork in figures 1, 5, 8 and 9.","issue":"5","doi":"10.1088/1361-6633/ad36d2","date_updated":"2025-09-04T13:39:07Z","status":"public","tmp":{"image":"/images/cc_by.png","short":"CC BY (3.0)","name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)","legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode"},"isi":1,"publication_status":"published","volume":87,"month":"04","_id":"15315","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Published Version","license":"https://creativecommons.org/licenses/by/3.0/","article_number":"056601","quality_controlled":"1","publication":"Reports on Progress in Physics","project":[{"_id":"34e2a5b5-11ca-11ed-8bc3-b2265616ef0b","name":"A mechano-chemical theory for stem cell fate decisions in organoid development","grant_number":"ALTF 343-2022"}],"language":[{"iso":"eng"}],"type":"journal_article","department":[{"_id":"EdHa"}],"scopus_import":"1","corr_author":"1"},{"oa":1,"author":[{"full_name":"Zocher, Sara","first_name":"Sara","last_name":"Zocher"},{"last_name":"Mccloskey","first_name":"Asako","full_name":"Mccloskey, Asako"},{"last_name":"Karasinsky","first_name":"Anne","full_name":"Karasinsky, Anne"},{"last_name":"Schulte","first_name":"Roberta","full_name":"Schulte, Roberta"},{"full_name":"Friedrich, Ulrike","first_name":"Ulrike","last_name":"Friedrich"},{"last_name":"Lesche","first_name":"Mathias","full_name":"Lesche, Mathias"},{"full_name":"Rund, Nicole","first_name":"Nicole","last_name":"Rund"},{"last_name":"Gage","first_name":"Fred H.","full_name":"Gage, Fred H."},{"full_name":"Hetzer, Martin W","first_name":"Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"Hetzer"},{"first_name":"Tomohisa","full_name":"Toda, Tomohisa","last_name":"Toda"}],"date_published":"2024-04-04T00:00:00Z","day":"04","abstract":[{"text":"Genomic DNA that resides in the nuclei of mammalian neurons can be as old as the organism itself. The life span of nuclear RNAs, which are critical for proper chromatin architecture and transcription regulation, has not been determined in adult tissues. In this work, we identified and characterized nuclear RNAs that do not turn over for at least 2 years in a subset of postnatally born cells in the mouse brain. These long-lived RNAs were stably retained in nuclei in a neural cell type–specific manner and were required for the maintenance of heterochromatin. Thus, the life span of neural cells may depend on both the molecular longevity of DNA for the storage of genetic information and also the extreme stability of RNA for the functional organization of chromatin.","lang":"eng"}],"doi":"10.1126/science.adf3481","issue":"6691","acknowledgement":"European Research Council: ERC-2018-STG, 804468 EAGER; European Research Council: ERC-2023-COG, 101125034 NEUTIME; Deutsche Forschungsgemeinschaft: TO1347/4-1; Boehringer Ingelheim Stiftung; Deutsches Zentrum für Neurodegenerative Erkrankungen","article_type":"original","publication_identifier":{"eissn":["1095-9203"],"issn":["0036-8075"]},"external_id":{"isi":["001253335100031"],"pmid":["38574132"]},"intvolume":" 384","year":"2024","date_created":"2024-04-14T22:01:01Z","pmid":1,"title":"Lifelong persistence of nuclear RNAs in the mouse brain","article_processing_charge":"No","publisher":"AAAS","citation":{"ieee":"S. Zocher et al., “Lifelong persistence of nuclear RNAs in the mouse brain,” Science, vol. 384, no. 6691. AAAS, pp. 53–59, 2024.","ista":"Zocher S, Mccloskey A, Karasinsky A, Schulte R, Friedrich U, Lesche M, Rund N, Gage FH, Hetzer M, Toda T. 2024. Lifelong persistence of nuclear RNAs in the mouse brain. Science. 384(6691), 53–59.","chicago":"Zocher, Sara, Asako Mccloskey, Anne Karasinsky, Roberta Schulte, Ulrike Friedrich, Mathias Lesche, Nicole Rund, Fred H. Gage, Martin Hetzer, and Tomohisa Toda. “Lifelong Persistence of Nuclear RNAs in the Mouse Brain.” Science. AAAS, 2024. https://doi.org/10.1126/science.adf3481.","apa":"Zocher, S., Mccloskey, A., Karasinsky, A., Schulte, R., Friedrich, U., Lesche, M., … Toda, T. (2024). Lifelong persistence of nuclear RNAs in the mouse brain. Science. AAAS. https://doi.org/10.1126/science.adf3481","short":"S. Zocher, A. Mccloskey, A. Karasinsky, R. Schulte, U. Friedrich, M. Lesche, N. Rund, F.H. Gage, M. Hetzer, T. Toda, Science 384 (2024) 53–59.","ama":"Zocher S, Mccloskey A, Karasinsky A, et al. Lifelong persistence of nuclear RNAs in the mouse brain. Science. 2024;384(6691):53-59. doi:10.1126/science.adf3481","mla":"Zocher, Sara, et al. “Lifelong Persistence of Nuclear RNAs in the Mouse Brain.” Science, vol. 384, no. 6691, AAAS, 2024, pp. 53–59, doi:10.1126/science.adf3481."},"language":[{"iso":"eng"}],"publication":"Science","scopus_import":"1","corr_author":"1","department":[{"_id":"MaHe"}],"OA_place":"repository","type":"journal_article","month":"04","volume":384,"publication_status":"published","isi":1,"OA_type":"green","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7615865","open_access":"1"}],"date_updated":"2025-09-04T13:39:58Z","status":"public","related_material":{"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://ista.ac.at/en/news/nerve-cells-old-at-heart/"}]},"quality_controlled":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"15316","page":"53-59","oa_version":"Submitted Version"},{"scopus_import":"1","corr_author":"1","ec_funded":1,"department":[{"_id":"JaMa"}],"type":"journal_article","language":[{"iso":"eng"}],"project":[{"grant_number":"F6504","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems"},{"call_identifier":"H2020","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425","name":"Optimal Transport and Stochastic Dynamics"},{"name":"Reaching consensus in heterogeneous random opinion dynamics","_id":"3490b268-11ca-11ed-8bc3-e0ad03f48839","grant_number":"M03211"},{"grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"_id":"34dbf174-11ca-11ed-8bc3-afe9d43d4b9c","name":"Configuration Spaces over Non-Smooth Spaces","grant_number":"E208"},{"name":"Dissipation and dispersion in nonlinear partial differential equations","_id":"260788DE-B435-11E9-9278-68D0E5697425","grant_number":"W1245","call_identifier":"FWF"}],"publication":"Annals of Applied Probability","quality_controlled":"1","oa_version":"Preprint","_id":"15317","page":"1789-1845","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"04","volume":34,"publication_status":"published","isi":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2112.14196","open_access":"1"}],"date_updated":"2025-09-04T13:36:00Z","status":"public","doi":"10.1214/23-AAP2007","issue":"2","acknowledgement":"The first author gratefully acknowledges funding by the Austrian Science Fund (FWF) grant F65, by the European Research Council (ERC, grant agreement No 716117, awarded to Prof. Dr. Jan Maas). He also gratefully acknowledges funding of his current position by the Austrian Science Fund (FWF) grant ESPRIT 208.\r\nThe second author gratefully acknowledges funding by the Hausdorff Center for Mathematics at the University of Bonn. Part of this work was completed while this author was a member of the Institute of Science and Technology Austria. He gratefully acknowledges funding of his position at that time by the Austrian Science Fund (FWF) grants F65 and W1245.\r\nThe third author gratefully acknowledges funding by the Lise Meitner fellowship, Austrian Science Fund (FWF): M3211. Part of this work was completed while funded by the European Union’s Horizon 2020 research and innovation programme under the Marie-Skłodowska-Curie grant agreement No. 754411.","article_type":"original","oa":1,"author":[{"id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","last_name":"Dello Schiavo","first_name":"Lorenzo","full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870"},{"id":"30AD2CBC-F248-11E8-B48F-1D18A9856A87","last_name":"Portinale","first_name":"Lorenzo","full_name":"Portinale, Lorenzo"},{"first_name":"Federico","full_name":"Sau, Federico","id":"E1836206-9F16-11E9-8814-AEFDE5697425","last_name":"Sau"}],"arxiv":1,"date_published":"2024-04-01T00:00:00Z","day":"01","abstract":[{"text":"We consider the open symmetric exclusion (SEP) and inclusion (SIP) processes on a bounded Lipschitz domain Ω, with both fast and slow boundary. For the random walks on Ω dual to SEP/SIP we establish: a functional-CLT-type convergence to the Brownian motion on Ω with either Neumann (slow boundary), Dirichlet (fast boundary), or Robin (at criticality) boundary conditions; the discrete-to-continuum convergence of the corresponding harmonic profiles. As a consequence, we rigorously derive the hydrodynamic and hydrostatic limits for SEP/SIP on Ω, and analyze their stationary nonequilibrium fluctuations. All scaling limit results for SEP/SIP concern finite-dimensional distribution convergence only, as our duality techniques do not require to establish tightness for the fields associated to the particle systems.","lang":"eng"}],"publisher":"Institute of Mathematical Statistics","article_processing_charge":"No","citation":{"mla":"Dello Schiavo, Lorenzo, et al. “Scaling Limits of Random Walks, Harmonic Profiles, and Stationary Nonequilibrium States in Lipschitz Domains.” Annals of Applied Probability, vol. 34, no. 2, Institute of Mathematical Statistics, 2024, pp. 1789–845, doi:10.1214/23-AAP2007.","ama":"Dello Schiavo L, Portinale L, Sau F. Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains. Annals of Applied Probability. 2024;34(2):1789-1845. doi:10.1214/23-AAP2007","short":"L. Dello Schiavo, L. Portinale, F. Sau, Annals of Applied Probability 34 (2024) 1789–1845.","apa":"Dello Schiavo, L., Portinale, L., & Sau, F. (2024). Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains. Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/23-AAP2007","chicago":"Dello Schiavo, Lorenzo, Lorenzo Portinale, and Federico Sau. “Scaling Limits of Random Walks, Harmonic Profiles, and Stationary Nonequilibrium States in Lipschitz Domains.” Annals of Applied Probability. Institute of Mathematical Statistics, 2024. https://doi.org/10.1214/23-AAP2007.","ieee":"L. Dello Schiavo, L. Portinale, and F. Sau, “Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains,” Annals of Applied Probability, vol. 34, no. 2. Institute of Mathematical Statistics, pp. 1789–1845, 2024.","ista":"Dello Schiavo L, Portinale L, Sau F. 2024. Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains. Annals of Applied Probability. 34(2), 1789–1845."},"publication_identifier":{"issn":["1050-5164"]},"external_id":{"arxiv":["2112.14196"],"isi":["001198623200016"]},"intvolume":" 34","year":"2024","date_created":"2024-04-14T22:01:02Z","title":"Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains"},{"article_type":"original","issue":"4","acknowledgement":"It is a pleasure to thank Phan Thành Nam for helpful discussions on bosonic atoms. L.B. was supported by the German Research Foundation within the Munich Center of Quantum Science and Technology (EXC 2111). N.L. gratefully acknowledges support from the Swiss National Science Foundation through the NCCR SwissMap and funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant agreement No 101024712. S.P. acknowledges funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—Project number 512258249.\r\nOpen Access funding enabled and organized by Projekt DEAL.","doi":"10.1007/s10955-024-03260-5","abstract":[{"text":"We consider a gas of N weakly interacting bosons in the ground state. Such gases exhibit Bose–Einstein condensation. The binding energy is defined as the energy it takes to remove one particle from the gas. In this article, we prove an asymptotic expansion for the binding energy, and compute the first orders explicitly for the homogeneous gas. Our result addresses in particular a conjecture by Nam (Lett Math Phys 108(1):141–159, 2018), and provides an asymptotic expansion of the ionization energy of bosonic atoms.","lang":"eng"}],"day":"06","date_published":"2024-04-06T00:00:00Z","oa":1,"arxiv":1,"author":[{"id":"A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425","last_name":"Bossmann","first_name":"Lea","full_name":"Bossmann, Lea","orcid":"0000-0002-6854-1343"},{"id":"4BC40BEC-F248-11E8-B48F-1D18A9856A87","last_name":"Leopold","first_name":"Nikolai K","full_name":"Leopold, Nikolai K","orcid":"0000-0002-0495-6822"},{"first_name":"David Johannes","full_name":"Mitrouskas, David Johannes","last_name":"Mitrouskas","id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d"},{"last_name":"Petrat","id":"40AC02DC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9166-5889","full_name":"Petrat, Sören P","first_name":"Sören P"}],"file_date_updated":"2024-04-16T11:09:37Z","ddc":["510"],"citation":{"apa":"Bossmann, L., Leopold, N. K., Mitrouskas, D. J., & Petrat, S. P. (2024). A note on the binding energy for Bosons in the mean-field limit. Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-024-03260-5","chicago":"Bossmann, Lea, Nikolai K Leopold, David Johannes Mitrouskas, and Sören P Petrat. “A Note on the Binding Energy for Bosons in the Mean-Field Limit.” Journal of Statistical Physics. Springer Nature, 2024. https://doi.org/10.1007/s10955-024-03260-5.","ieee":"L. Bossmann, N. K. Leopold, D. J. Mitrouskas, and S. P. Petrat, “A note on the binding energy for Bosons in the mean-field limit,” Journal of Statistical Physics, vol. 191, no. 4. Springer Nature, 2024.","ista":"Bossmann L, Leopold NK, Mitrouskas DJ, Petrat SP. 2024. A note on the binding energy for Bosons in the mean-field limit. Journal of Statistical Physics. 191(4), 48.","mla":"Bossmann, Lea, et al. “A Note on the Binding Energy for Bosons in the Mean-Field Limit.” Journal of Statistical Physics, vol. 191, no. 4, 48, Springer Nature, 2024, doi:10.1007/s10955-024-03260-5.","ama":"Bossmann L, Leopold NK, Mitrouskas DJ, Petrat SP. A note on the binding energy for Bosons in the mean-field limit. Journal of Statistical Physics. 2024;191(4). doi:10.1007/s10955-024-03260-5","short":"L. Bossmann, N.K. Leopold, D.J. Mitrouskas, S.P. Petrat, Journal of Statistical Physics 191 (2024)."},"publisher":"Springer Nature","article_processing_charge":"Yes (via OA deal)","file":[{"date_updated":"2024-04-16T11:09:37Z","file_size":398665,"success":1,"creator":"dernst","file_name":"2024_JourStatPhysics_Bossmann.pdf","content_type":"application/pdf","date_created":"2024-04-16T11:09:37Z","file_id":"15325","relation":"main_file","access_level":"open_access","checksum":"839242a9ec1c01158112de25f196e60d"}],"title":"A note on the binding energy for Bosons in the mean-field limit","has_accepted_license":"1","intvolume":" 191","date_created":"2024-04-14T22:01:02Z","year":"2024","publication_identifier":{"issn":["0022-4715"],"eissn":["1572-9613"]},"external_id":{"arxiv":["2307.13115"],"isi":["001197663100002"]},"type":"journal_article","department":[{"_id":"RoSe"}],"scopus_import":"1","publication":"Journal of Statistical Physics","language":[{"iso":"eng"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"15318","oa_version":"Published Version","quality_controlled":"1","article_number":"48","status":"public","date_updated":"2025-09-04T13:36:49Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publication_status":"published","month":"04","volume":191,"isi":1},{"has_accepted_license":"1","title":"Interplay of EXO70 and MLO proteins modulates trichome cell wall composition and susceptibility to powdery mildew","pmid":1,"publication_identifier":{"eissn":["1532-298X"],"issn":["1040-4651"]},"external_id":{"pmid":["38124479"]},"intvolume":" 36","date_created":"2024-04-14T22:01:02Z","year":"2024","file_date_updated":"2024-04-17T06:57:54Z","ddc":["580"],"publisher":"Oxford University Press","article_processing_charge":"Yes (in subscription journal)","file":[{"relation":"main_file","access_level":"open_access","checksum":"f9994d2e4748feec24c992b39871aba1","file_id":"15326","date_created":"2024-04-17T06:57:54Z","file_size":2866098,"date_updated":"2024-04-17T06:57:54Z","success":1,"creator":"dernst","file_name":"2024_PlantCell_Huebbers.pdf","content_type":"application/pdf"}],"citation":{"ista":"Huebbers JW, Caldarescu GA, Kubátová Z, Sabol P, Levecque SCJ, Kuhn H, Kulich I, Reinstädler A, Büttgen K, Manga-Robles A, Mélida H, Pauly M, Panstruga R, Žárský V. 2024. Interplay of EXO70 and MLO proteins modulates trichome cell wall composition and susceptibility to powdery mildew. Plant Cell. 36(4), 1007–1035.","ieee":"J. W. Huebbers et al., “Interplay of EXO70 and MLO proteins modulates trichome cell wall composition and susceptibility to powdery mildew,” Plant Cell, vol. 36, no. 4. Oxford University Press, pp. 1007–1035, 2024.","apa":"Huebbers, J. W., Caldarescu, G. A., Kubátová, Z., Sabol, P., Levecque, S. C. J., Kuhn, H., … Žárský, V. (2024). Interplay of EXO70 and MLO proteins modulates trichome cell wall composition and susceptibility to powdery mildew. Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koad319","chicago":"Huebbers, Jan W., George A. Caldarescu, Zdeňka Kubátová, Peter Sabol, Sophie C.J. Levecque, Hannah Kuhn, Ivan Kulich, et al. “Interplay of EXO70 and MLO Proteins Modulates Trichome Cell Wall Composition and Susceptibility to Powdery Mildew.” Plant Cell. Oxford University Press, 2024. https://doi.org/10.1093/plcell/koad319.","short":"J.W. Huebbers, G.A. Caldarescu, Z. Kubátová, P. Sabol, S.C.J. Levecque, H. Kuhn, I. Kulich, A. Reinstädler, K. Büttgen, A. Manga-Robles, H. Mélida, M. Pauly, R. Panstruga, V. Žárský, Plant Cell 36 (2024) 1007–1035.","mla":"Huebbers, Jan W., et al. “Interplay of EXO70 and MLO Proteins Modulates Trichome Cell Wall Composition and Susceptibility to Powdery Mildew.” Plant Cell, vol. 36, no. 4, Oxford University Press, 2024, pp. 1007–35, doi:10.1093/plcell/koad319.","ama":"Huebbers JW, Caldarescu GA, Kubátová Z, et al. Interplay of EXO70 and MLO proteins modulates trichome cell wall composition and susceptibility to powdery mildew. Plant Cell. 2024;36(4):1007-1035. doi:10.1093/plcell/koad319"},"day":"01","abstract":[{"lang":"eng","text":"Exocyst component of 70-kDa (EXO70) proteins are constituents of the exocyst complex implicated in vesicle tethering during exocytosis. MILDEW RESISTANCE LOCUS O (MLO) proteins are plant-specific calcium channels and some MLO isoforms enable fungal powdery mildew pathogenesis. We here detected an unexpected phenotypic overlap of Arabidopsis thaliana exo70H4 and mlo2 mlo6 mlo12 triple mutant plants regarding the biogenesis of leaf trichome secondary cell walls. Biochemical and Fourier transform infrared spectroscopic analyses corroborated deficiencies in the composition of trichome cell walls in these mutants. Transgenic lines expressing fluorophore-tagged EXO70H4 and MLO exhibited extensive colocalization of these proteins. Furthermore, mCherry-EXO70H4 mislocalized in trichomes of the mlo triple mutant and, vice versa, MLO6-GFP mislocalized in trichomes of the exo70H4 mutant. Expression of GFP-marked PMR4 callose synthase, a known cargo of EXO70H4-dependent exocytosis, revealed reduced cell wall delivery of GFP-PMR4 in trichomes of mlo triple mutant plants. In vivo protein–protein interaction assays in plant and yeast cells uncovered isoform-preferential interactions between EXO70.2 subfamily members and MLO proteins. Finally, exo70H4 and mlo6 mutants, when combined, showed synergistically enhanced resistance to powdery mildew attack. Taken together, our data point to an isoform-specific interplay of EXO70 and MLO proteins in the modulation of trichome cell wall biogenesis and powdery mildew susceptibility."}],"oa":1,"author":[{"full_name":"Huebbers, Jan W.","first_name":"Jan W.","last_name":"Huebbers"},{"last_name":"Caldarescu","first_name":"George A.","full_name":"Caldarescu, George A."},{"full_name":"Kubátová, Zdeňka","first_name":"Zdeňka","last_name":"Kubátová"},{"first_name":"Peter","full_name":"Sabol, Peter","last_name":"Sabol"},{"last_name":"Levecque","first_name":"Sophie C.J.","full_name":"Levecque, Sophie C.J."},{"last_name":"Kuhn","full_name":"Kuhn, Hannah","first_name":"Hannah"},{"full_name":"Kulich, Ivan","first_name":"Ivan","id":"57a1567c-8314-11eb-9063-c9ddc3451a54","last_name":"Kulich"},{"first_name":"Anja","full_name":"Reinstädler, Anja","last_name":"Reinstädler"},{"last_name":"Büttgen","first_name":"Kim","full_name":"Büttgen, Kim"},{"first_name":"Alba","full_name":"Manga-Robles, Alba","last_name":"Manga-Robles"},{"last_name":"Mélida","first_name":"Hugo","full_name":"Mélida, Hugo"},{"full_name":"Pauly, Markus","first_name":"Markus","last_name":"Pauly"},{"first_name":"Ralph","full_name":"Panstruga, Ralph","last_name":"Panstruga"},{"last_name":"Žárský","full_name":"Žárský, Viktor","first_name":"Viktor"}],"date_published":"2024-04-01T00:00:00Z","issue":"4","article_type":"original","doi":"10.1093/plcell/koad319","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"status":"public","date_updated":"2024-04-17T07:01:21Z","month":"04","publication_status":"published","volume":36,"_id":"15319","oa_version":"Published Version","page":"1007-1035","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","publication":"Plant Cell","language":[{"iso":"eng"}],"department":[{"_id":"JiFr"}],"type":"journal_article","scopus_import":"1"},{"article_number":"L022002","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"15320","oa_version":"Published Version","volume":6,"publication_status":"published","month":"04","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","date_updated":"2025-05-14T09:31:50Z","scopus_import":"1","department":[{"_id":"GeKa"}],"type":"journal_article","language":[{"iso":"eng"}],"publication":"Physical Review Research","file":[{"file_id":"15327","relation":"main_file","access_level":"open_access","checksum":"7b9cb3b17d89f392bd582e30d7a72a29","success":1,"file_name":"2024_PhysReviewResearch_Souto.pdf","creator":"dernst","content_type":"application/pdf","date_updated":"2024-04-17T07:14:53Z","file_size":1073544,"date_created":"2024-04-17T07:14:53Z"}],"publisher":"American Physical Society","article_processing_charge":"Yes","DOAJ_listed":"1","citation":{"chicago":"Seoane Souto, Rubén, Martin Leijnse, Constantin Schrade, Marco Valentini, Georgios Katsaros, and Jeroen Danon. “Tuning the Josephson Diode Response with an Ac Current.” Physical Review Research. American Physical Society, 2024. https://doi.org/10.1103/PhysRevResearch.6.L022002.","apa":"Seoane Souto, R., Leijnse, M., Schrade, C., Valentini, M., Katsaros, G., & Danon, J. (2024). Tuning the Josephson diode response with an ac current. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.6.L022002","ista":"Seoane Souto R, Leijnse M, Schrade C, Valentini M, Katsaros G, Danon J. 2024. Tuning the Josephson diode response with an ac current. Physical Review Research. 6(2), L022002.","ieee":"R. Seoane Souto, M. Leijnse, C. Schrade, M. Valentini, G. Katsaros, and J. Danon, “Tuning the Josephson diode response with an ac current,” Physical Review Research, vol. 6, no. 2. American Physical Society, 2024.","ama":"Seoane Souto R, Leijnse M, Schrade C, Valentini M, Katsaros G, Danon J. Tuning the Josephson diode response with an ac current. Physical Review Research. 2024;6(2). doi:10.1103/PhysRevResearch.6.L022002","mla":"Seoane Souto, Rubén, et al. “Tuning the Josephson Diode Response with an Ac Current.” Physical Review Research, vol. 6, no. 2, L022002, American Physical Society, 2024, doi:10.1103/PhysRevResearch.6.L022002.","short":"R. Seoane Souto, M. Leijnse, C. Schrade, M. Valentini, G. Katsaros, J. Danon, Physical Review Research 6 (2024)."},"file_date_updated":"2024-04-17T07:14:53Z","ddc":["530"],"publication_identifier":{"eissn":["2643-1564"]},"year":"2024","date_created":"2024-04-14T22:01:02Z","intvolume":" 6","has_accepted_license":"1","title":"Tuning the Josephson diode response with an ac current","doi":"10.1103/PhysRevResearch.6.L022002","acknowledgement":"We acknowledge support from research grants Spanish CM Talento Program (Project No. 2022-T1/IND-24070), Spanish Ministry of Science, innovation, and Universities through Grant No. PID2022-140552NA-I00, Swedish Research Council under Grant Agreement No. 2020-03412, the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme under Grant Agreement No. 856526, Nanolund, FWF Project with [82],\r\nand Microsoft Corporation. ","issue":"2","article_type":"letter_note","author":[{"last_name":"Seoane Souto","full_name":"Seoane Souto, Rubén","first_name":"Rubén"},{"last_name":"Leijnse","first_name":"Martin","full_name":"Leijnse, Martin"},{"last_name":"Schrade","first_name":"Constantin","full_name":"Schrade, Constantin"},{"full_name":"Valentini, Marco","first_name":"Marco","id":"C0BB2FAC-D767-11E9-B658-BC13E6697425","last_name":"Valentini"},{"full_name":"Katsaros, Georgios","first_name":"Georgios","orcid":"0000-0001-8342-202X","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros"},{"first_name":"Jeroen","full_name":"Danon, Jeroen","last_name":"Danon"}],"oa":1,"date_published":"2024-04-01T00:00:00Z","day":"01","abstract":[{"text":"Josephson diodes are superconducting elements that show an asymmetry in the critical current depending on the direction of the current. Here, we theoretically explore how an alternating current bias can tune the response of such a diode. We show that for slow driving there is always a regime where the system can only carry zero-voltage dc current in one direction, thus effectively behaving as an ideal Josephson diode. Under fast driving, the diode efficiency is also tunable, although the ideal regime cannot be reached in this case. We also investigate the residual dissipation due to the time-dependent current bias and show that it remains small. All our conclusions are solely based on the critical current asymmetry of the junction, and are thus compatible with any Josephson diode.","lang":"eng"}]},{"acknowledgement":"This work was supported by Institut Carnot STAR, Marseille, France and by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413.","issue":"9","doi":"10.1609/aaai.v38i9.28943","abstract":[{"lang":"eng","text":"Boolean Networks (BNs) are widely used as a modeling formalism in several domains, notably systems biology and computer science. A fundamental problem in BN analysis is the enumeration of trap spaces, which are hypercubes in the state space that cannot be escaped once entered. Several methods have been proposed for enumerating trap spaces, however they often suffer from scalability and efficiency issues, particularly for large and complex models. To our knowledge, the most efficient and recent methods for the trap space enumeration all rely on Answer Set Programming (ASP), which has been widely applied to the analysis of BNs. Motivated by these considerations, our work proposes a new method for enumerating trap spaces in BNs using ASP. We evaluate the method on a mix of 250+ real-world and 400+ randomly generated BNs, showing that it enables analysis of models beyond the capabilities of existing tools (namely pyboolnet, mpbn, trappist, and trapmvn)."}],"day":"25","date_published":"2024-03-25T00:00:00Z","author":[{"first_name":"Giang","full_name":"Trinh, Giang","last_name":"Trinh"},{"first_name":"Belaid","full_name":"Benhamou, Belaid","last_name":"Benhamou"},{"orcid":"0000-0003-1993-0331","full_name":"Pastva, Samuel","first_name":"Samuel","last_name":"Pastva","id":"07c5ea74-f61c-11ec-a664-aa7c5d957b2b"},{"full_name":"Soliman, Sylvain","first_name":"Sylvain","last_name":"Soliman"}],"oa":1,"ddc":["000"],"citation":{"short":"G. Trinh, B. Benhamou, S. Pastva, S. Soliman, in:, Proceedings of the 38th AAAI Conference on Artificial Intelligence, Association for the Advancement of Artificial Intelligence, 2024, pp. 10714–10722.","ama":"Trinh G, Benhamou B, Pastva S, Soliman S. Scalable enumeration of trap spaces in boolean networks via answer set programming. In: Proceedings of the 38th AAAI Conference on Artificial Intelligence. Vol 38. Association for the Advancement of Artificial Intelligence; 2024:10714-10722. doi:10.1609/aaai.v38i9.28943","mla":"Trinh, Giang, et al. “Scalable Enumeration of Trap Spaces in Boolean Networks via Answer Set Programming.” Proceedings of the 38th AAAI Conference on Artificial Intelligence, vol. 38, no. 9, Association for the Advancement of Artificial Intelligence, 2024, pp. 10714–22, doi:10.1609/aaai.v38i9.28943.","ieee":"G. Trinh, B. Benhamou, S. Pastva, and S. Soliman, “Scalable enumeration of trap spaces in boolean networks via answer set programming,” in Proceedings of the 38th AAAI Conference on Artificial Intelligence, 2024, vol. 38, no. 9, pp. 10714–10722.","ista":"Trinh G, Benhamou B, Pastva S, Soliman S. 2024. Scalable enumeration of trap spaces in boolean networks via answer set programming. Proceedings of the 38th AAAI Conference on Artificial Intelligence. vol. 38, 10714–10722.","chicago":"Trinh, Giang, Belaid Benhamou, Samuel Pastva, and Sylvain Soliman. “Scalable Enumeration of Trap Spaces in Boolean Networks via Answer Set Programming.” In Proceedings of the 38th AAAI Conference on Artificial Intelligence, 38:10714–22. Association for the Advancement of Artificial Intelligence, 2024. https://doi.org/10.1609/aaai.v38i9.28943.","apa":"Trinh, G., Benhamou, B., Pastva, S., & Soliman, S. (2024). Scalable enumeration of trap spaces in boolean networks via answer set programming. In Proceedings of the 38th AAAI Conference on Artificial Intelligence (Vol. 38, pp. 10714–10722). Association for the Advancement of Artificial Intelligence. https://doi.org/10.1609/aaai.v38i9.28943"},"publisher":"Association for the Advancement of Artificial Intelligence","article_processing_charge":"No","title":"Scalable enumeration of trap spaces in boolean networks via answer set programming","year":"2024","date_created":"2024-04-14T22:01:02Z","intvolume":" 38","publication_identifier":{"issn":["2159-5399"],"isbn":["1577358872"],"eissn":["2374-3468"]},"type":"conference","department":[{"_id":"ToHe"}],"ec_funded":1,"scopus_import":"1","publication":"Proceedings of the 38th AAAI Conference on Artificial Intelligence","project":[{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"15321","page":"10714-10722","oa_version":"Published Version","quality_controlled":"1","status":"public","date_updated":"2026-06-18T17:48:08Z","main_file_link":[{"url":"https://amu.hal.science/hal-04523118/","open_access":"1"}],"month":"03","publication_status":"published","volume":38},{"issue":"3","article_type":"letter_note","doi":"10.1103/PhysRevE.109.L032108","day":"29","abstract":[{"text":"The tendency of materials to order in triboelectric series has prompted suggestions that contact electrification might have a single, unified underlying description. However, the possibility of “triboelectric cycles,” i.e., series that loop back onto themselves, is seemingly at odds with such a coherent description. In this work, we propose that if multiple charge carrying species are at play, both triboelectric series and cycles are possible. We show how series arise naturally if only a single charge carrier species is involved and if the driving mechanism is approach toward thermodynamic equilibrium, and simultaneously, that cycles are forbidden under such conditions. Suspecting multiple carriers might relax the situation, we affirm this is the case by explicit construction of a cycle involving two carriers, and then extend this to show how more complex cycles emerge. Our work highlights the importance of series and cycles towards determining the underlying mechanism(s) and carrier(s) in contact electrification.","lang":"eng"}],"author":[{"first_name":"Juan Carlos A","full_name":"Sobarzo Ponce, Juan Carlos A","last_name":"Sobarzo Ponce","id":"4B807D68-AE37-11E9-AC72-31CAE5697425"},{"id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","first_name":"Scott R","full_name":"Waitukaitis, Scott R","orcid":"0000-0002-2299-3176"}],"date_published":"2024-03-29T00:00:00Z","article_processing_charge":"No","publisher":"American Physical Society","citation":{"chicago":"Sobarzo Ponce, Juan Carlos A, and Scott R Waitukaitis. “Multiple Charge Carrier Species as a Possible Cause for Triboelectric Cycles.” Physical Review E. American Physical Society, 2024. https://doi.org/10.1103/PhysRevE.109.L032108.","apa":"Sobarzo Ponce, J. C. A., & Waitukaitis, S. R. (2024). Multiple charge carrier species as a possible cause for triboelectric cycles. Physical Review E. American Physical Society. https://doi.org/10.1103/PhysRevE.109.L032108","ista":"Sobarzo Ponce JCA, Waitukaitis SR. 2024. Multiple charge carrier species as a possible cause for triboelectric cycles. Physical Review E. 109(3), L032108.","ieee":"J. C. A. Sobarzo Ponce and S. R. Waitukaitis, “Multiple charge carrier species as a possible cause for triboelectric cycles,” Physical Review E, vol. 109, no. 3. American Physical Society, 2024.","ama":"Sobarzo Ponce JCA, Waitukaitis SR. Multiple charge carrier species as a possible cause for triboelectric cycles. Physical Review E. 2024;109(3). doi:10.1103/PhysRevE.109.L032108","mla":"Sobarzo Ponce, Juan Carlos A., and Scott R. Waitukaitis. “Multiple Charge Carrier Species as a Possible Cause for Triboelectric Cycles.” Physical Review E, vol. 109, no. 3, L032108, American Physical Society, 2024, doi:10.1103/PhysRevE.109.L032108.","short":"J.C.A. Sobarzo Ponce, S.R. Waitukaitis, Physical Review E 109 (2024)."},"pmid":1,"title":"Multiple charge carrier species as a possible cause for triboelectric cycles","publication_identifier":{"issn":["2470-0045"],"eissn":["2470-0053"]},"external_id":{"isi":["001199745200004"],"pmid":["38632754"]},"intvolume":" 109","date_created":"2024-04-14T22:01:03Z","year":"2024","department":[{"_id":"ScWa"}],"type":"journal_article","corr_author":"1","scopus_import":"1","publication":"Physical Review E","language":[{"iso":"eng"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"15322","oa_version":"None","related_material":{"record":[{"id":"20203","status":"public","relation":"dissertation_contains"}]},"quality_controlled":"1","article_number":"L032108","status":"public","date_updated":"2026-04-07T11:50:54Z","month":"03","publication_status":"published","volume":109,"isi":1}]