[{"article_type":"letter_note","quality_controlled":"1","article_processing_charge":"No","oa_version":"None","language":[{"iso":"eng"}],"page":"392-411","status":"public","type":"journal_article","intvolume":" 248","volume":248,"date_published":"2024-01-29T00:00:00Z","department":[{"_id":"StFr"}],"isi":1,"scopus_import":"1","pmid":1,"day":"29","_id":"14701","date_created":"2023-12-20T10:48:09Z","keyword":["Physical and Theoretical Chemistry"],"publication_status":"published","external_id":{"pmid":["38112202"],"isi":["001130090400001"]},"citation":{"ieee":"L. A. Archer et al., “Towards practical metal–oxygen batteries: General discussion,” Faraday Discussions, vol. 248. Royal Society of Chemistry, pp. 392–411, 2024.","mla":"Archer, Lynden A., et al. “Towards Practical Metal–Oxygen Batteries: General Discussion.” Faraday Discussions, vol. 248, Royal Society of Chemistry, 2024, pp. 392–411, doi:10.1039/d3fd90062b.","apa":"Archer, L. A., Bruce, P. G., Calvo, E. J., Dewar, D., Ellison, J. H. J., Freunberger, S. A., … Ye, S. (2024). Towards practical metal–oxygen batteries: General discussion. Faraday Discussions. Royal Society of Chemistry. https://doi.org/10.1039/d3fd90062b","short":"L.A. Archer, P.G. Bruce, E.J. Calvo, D. Dewar, J.H.J. Ellison, S.A. Freunberger, X. Gao, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda, S. Menkin, S. Mondal, Q. Qiu, T. Samarakoon, I. Temprano, K. Uosaki, G. Vailaya, E.D. Wachsman, Y. Wu, S. Ye, Faraday Discussions 248 (2024) 392–411.","ista":"Archer LA, Bruce PG, Calvo EJ, Dewar D, Ellison JHJ, Freunberger SA, Gao X, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Menkin S, Mondal S, Qiu Q, Samarakoon T, Temprano I, Uosaki K, Vailaya G, Wachsman ED, Wu Y, Ye S. 2024. Towards practical metal–oxygen batteries: General discussion. Faraday Discussions. 248, 392–411.","chicago":"Archer, Lynden A., Peter G. Bruce, Ernesto J. Calvo, Daniel Dewar, James H. J. Ellison, Stefan Alexander Freunberger, Xiangwen Gao, et al. “Towards Practical Metal–Oxygen Batteries: General Discussion.” Faraday Discussions. Royal Society of Chemistry, 2024. https://doi.org/10.1039/d3fd90062b.","ama":"Archer LA, Bruce PG, Calvo EJ, et al. Towards practical metal–oxygen batteries: General discussion. Faraday Discussions. 2024;248:392-411. doi:10.1039/d3fd90062b"},"month":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"first_name":"Lynden A.","last_name":"Archer","full_name":"Archer, Lynden A."},{"last_name":"Bruce","full_name":"Bruce, Peter G.","first_name":"Peter G."},{"full_name":"Calvo, Ernesto J.","last_name":"Calvo","first_name":"Ernesto J."},{"first_name":"Daniel","last_name":"Dewar","full_name":"Dewar, Daniel"},{"full_name":"Ellison, James H. J.","last_name":"Ellison","first_name":"James H. J."},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander"},{"first_name":"Xiangwen","full_name":"Gao, Xiangwen","last_name":"Gao"},{"last_name":"Hardwick","full_name":"Hardwick, Laurence J.","first_name":"Laurence J."},{"first_name":"Gabriela","full_name":"Horwitz, Gabriela","last_name":"Horwitz"},{"last_name":"Janek","full_name":"Janek, Jürgen","first_name":"Jürgen"},{"last_name":"Johnson","full_name":"Johnson, Lee R.","first_name":"Lee R."},{"last_name":"Jordan","full_name":"Jordan, Jack W.","first_name":"Jack W."},{"first_name":"Shoichi","last_name":"Matsuda","full_name":"Matsuda, Shoichi"},{"first_name":"Svetlana","last_name":"Menkin","full_name":"Menkin, Svetlana"},{"id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","full_name":"Mondal, Soumyadip","last_name":"Mondal","first_name":"Soumyadip"},{"last_name":"Qiu","full_name":"Qiu, Qianyuan","first_name":"Qianyuan"},{"last_name":"Samarakoon","full_name":"Samarakoon, Thukshan","first_name":"Thukshan"},{"first_name":"Israel","last_name":"Temprano","full_name":"Temprano, Israel"},{"full_name":"Uosaki, Kohei","last_name":"Uosaki","first_name":"Kohei"},{"last_name":"Vailaya","full_name":"Vailaya, Ganesh","first_name":"Ganesh"},{"first_name":"Eric D.","last_name":"Wachsman","full_name":"Wachsman, Eric D."},{"first_name":"Yiying","last_name":"Wu","full_name":"Wu, Yiying"},{"first_name":"Shen","last_name":"Ye","full_name":"Ye, Shen"}],"doi":"10.1039/d3fd90062b","publication":"Faraday Discussions","year":"2024","date_updated":"2025-09-04T11:34:30Z","publisher":"Royal Society of Chemistry","title":"Towards practical metal–oxygen batteries: General discussion","publication_identifier":{"issn":["1359-6640"],"eissn":["1364-5498"]}},{"citation":{"ista":"Attard GA, Calvo EJ, Curtiss LA, Dewar D, Ellison JHJ, Gao X, Grey CP, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Mondal S, Neale AR, Ortiz-Vitoriano N, Temprano I, Vailaya G, Wachsman ED, Wang H-H, Wu Y, Ye S. 2024. Materials for stable metal–oxygen battery cathodes: general discussion. Faraday Discussions. 248, 75–88.","ama":"Attard GA, Calvo EJ, Curtiss LA, et al. Materials for stable metal–oxygen battery cathodes: general discussion. Faraday Discussions. 2024;248:75-88. doi:10.1039/d3fd90059b","chicago":"Attard, Gary A., Ernesto J. Calvo, Larry A. Curtiss, Daniel Dewar, James H. J. Ellison, Xiangwen Gao, Clare P. Grey, et al. “Materials for Stable Metal–Oxygen Battery Cathodes: General Discussion.” Faraday Discussions. Royal Society of Chemistry, 2024. https://doi.org/10.1039/d3fd90059b.","mla":"Attard, Gary A., et al. “Materials for Stable Metal–Oxygen Battery Cathodes: General Discussion.” Faraday Discussions, vol. 248, Royal Society of Chemistry, 2024, pp. 75–88, doi:10.1039/d3fd90059b.","ieee":"G. A. Attard et al., “Materials for stable metal–oxygen battery cathodes: general discussion,” Faraday Discussions, vol. 248. Royal Society of Chemistry, pp. 75–88, 2024.","apa":"Attard, G. A., Calvo, E. J., Curtiss, L. A., Dewar, D., Ellison, J. H. J., Gao, X., … Ye, S. (2024). Materials for stable metal–oxygen battery cathodes: general discussion. Faraday Discussions. Royal Society of Chemistry. https://doi.org/10.1039/d3fd90059b","short":"G.A. Attard, E.J. Calvo, L.A. Curtiss, D. Dewar, J.H.J. Ellison, X. Gao, C.P. Grey, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda, S. Mondal, A.R. Neale, N. Ortiz-Vitoriano, I. Temprano, G. Vailaya, E.D. Wachsman, H.-H. Wang, Y. Wu, S. Ye, Faraday Discussions 248 (2024) 75–88."},"external_id":{"pmid":["38109098"],"isi":["001130029600001"]},"author":[{"first_name":"Gary A.","full_name":"Attard, Gary A.","last_name":"Attard"},{"first_name":"Ernesto J.","full_name":"Calvo, Ernesto J.","last_name":"Calvo"},{"full_name":"Curtiss, Larry A.","last_name":"Curtiss","first_name":"Larry A."},{"first_name":"Daniel","full_name":"Dewar, Daniel","last_name":"Dewar"},{"last_name":"Ellison","full_name":"Ellison, James H. J.","first_name":"James H. J."},{"first_name":"Xiangwen","full_name":"Gao, Xiangwen","last_name":"Gao"},{"last_name":"Grey","full_name":"Grey, Clare P.","first_name":"Clare P."},{"first_name":"Laurence J.","last_name":"Hardwick","full_name":"Hardwick, Laurence J."},{"first_name":"Gabriela","full_name":"Horwitz, Gabriela","last_name":"Horwitz"},{"first_name":"Juergen","last_name":"Janek","full_name":"Janek, Juergen"},{"first_name":"Lee R.","last_name":"Johnson","full_name":"Johnson, Lee R."},{"first_name":"Jack W.","last_name":"Jordan","full_name":"Jordan, Jack W."},{"last_name":"Matsuda","full_name":"Matsuda, Shoichi","first_name":"Shoichi"},{"last_name":"Mondal","full_name":"Mondal, Soumyadip","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","first_name":"Soumyadip"},{"first_name":"Alex R.","last_name":"Neale","full_name":"Neale, Alex R."},{"first_name":"Nagore","last_name":"Ortiz-Vitoriano","full_name":"Ortiz-Vitoriano, Nagore"},{"last_name":"Temprano","full_name":"Temprano, Israel","first_name":"Israel"},{"first_name":"Ganesh","last_name":"Vailaya","full_name":"Vailaya, Ganesh"},{"full_name":"Wachsman, Eric D.","last_name":"Wachsman","first_name":"Eric D."},{"first_name":"Hsien-Hau","last_name":"Wang","full_name":"Wang, Hsien-Hau"},{"last_name":"Wu","full_name":"Wu, Yiying","first_name":"Yiying"},{"first_name":"Shen","full_name":"Ye, Shen","last_name":"Ye"}],"doi":"10.1039/d3fd90059b","month":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication":"Faraday Discussions","date_updated":"2025-09-04T11:35:09Z","publisher":"Royal Society of Chemistry","year":"2024","publication_identifier":{"issn":["1359-6640"],"eissn":["1364-5498"]},"title":"Materials for stable metal–oxygen battery cathodes: general discussion","_id":"14702","day":"29","date_created":"2023-12-20T10:49:43Z","keyword":["Physical and Theoretical Chemistry"],"publication_status":"published","date_published":"2024-01-29T00:00:00Z","department":[{"_id":"StFr"}],"isi":1,"scopus_import":"1","pmid":1,"quality_controlled":"1","article_type":"letter_note","article_processing_charge":"No","language":[{"iso":"eng"}],"page":"75-88","oa_version":"None","type":"journal_article","status":"public","intvolume":" 248","volume":248},{"keyword":["Optimal transport","Hamilton-Jacobi equation","convex optimization"],"publication_status":"epub_ahead","_id":"14703","day":"11","OA_type":"hybrid","oa":1,"date_created":"2023-12-21T10:14:37Z","date_updated":"2025-09-04T11:35:55Z","publisher":"Springer Nature","corr_author":"1","year":"2024","publication":"Foundations of Computational Mathematics","publication_identifier":{"eissn":["1615-3383"],"issn":["1615-3375"]},"title":"Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation","citation":{"short":"S. Ishida, H. Lavenant, Foundations of Computational Mathematics (2024).","apa":"Ishida, S., & Lavenant, H. (2024). Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. Foundations of Computational Mathematics. Springer Nature. https://doi.org/10.1007/s10208-024-09686-3","mla":"Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization of Dynamic Optimal Transport Using the Dual Formulation.” Foundations of Computational Mathematics, Springer Nature, 2024, doi:10.1007/s10208-024-09686-3.","ieee":"S. Ishida and H. Lavenant, “Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation,” Foundations of Computational Mathematics. Springer Nature, 2024.","ama":"Ishida S, Lavenant H. Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. Foundations of Computational Mathematics. 2024. doi:10.1007/s10208-024-09686-3","chicago":"Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization of Dynamic Optimal Transport Using the Dual Formulation.” Foundations of Computational Mathematics. Springer Nature, 2024. https://doi.org/10.1007/s10208-024-09686-3.","ista":"Ishida S, Lavenant H. 2024. Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. Foundations of Computational Mathematics."},"external_id":{"isi":["001352503300001"],"arxiv":["2312.12213"]},"doi":"10.1007/s10208-024-09686-3","author":[{"first_name":"Sadashige","last_name":"Ishida","full_name":"Ishida, Sadashige","id":"6F7C4B96-A8E9-11E9-A7CA-09ECE5697425"},{"first_name":"Hugo","last_name":"Lavenant","full_name":"Lavenant, Hugo"}],"month":"11","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","status":"public","article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","article_type":"original","abstract":[{"lang":"eng","text":"We present a discretization of the dynamic optimal transport problem for which we can obtain the convergence rate for the value of the transport cost to its continuous value when the temporal and spatial stepsize vanish. This convergence result does not require any regularity assumption on the measures, though experiments suggest that the rate is not sharp. Via an analysis of the duality gap we also obtain the convergence rates for the gradient of the optimal potentials and the velocity field under mild regularity assumptions. To obtain such rates we discretize the dual formulation of the dynamic optimal transport problem and use the mature literature related to the error due to discretizing the Hamilton-Jacobi equation."}],"language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s10208-024-09686-3"}],"oa_version":"Published Version","OA_place":"publisher","project":[{"_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088","grant_number":"101045083","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena"}],"arxiv":1,"date_published":"2024-11-11T00:00:00Z","acknowledgement":"The authors would like to thank Chris Wojtan for his continuous support and several interesting discussions. Part of this research was performed during two visits: one of SI to the BIDSA research center at Bocconi University, and one of HL to the Institute of Science and Technology Austria. Both host institutions are warmly acknowledged for the hospitality. HL is partially supported by the MUR-Prin 2022-202244A7YL “Gradient Flows and Non-Smooth Geometric Structures with Applications to Optimization and Machine Learning”, funded by the European Union - Next Generation EU. SI is supported in part by ERC Consolidator Grant 101045083 “CoDiNA” funded by the European Research Council.","scopus_import":"1","department":[{"_id":"GradSch"},{"_id":"ChWo"}],"isi":1},{"article_processing_charge":"No","license":"https://creativecommons.org/licenses/by/4.0/","oa_version":"Published Version","file_date_updated":"2023-12-22T14:14:06Z","abstract":[{"lang":"eng","text":"Since the commercialization of brine shrimp (genus Artemia) in the 1950s, this lineage, and in particular the model species Artemia franciscana, has been the subject of extensive research. However, our understanding of the genetic mechanisms underlying various aspects of their reproductive biology, including sex determination, are still lacking. This is partly due to the scarcity of genomic resources for Artemia species and crustaceans in general. Here, we present a chromosome-level genome assembly of Artemia franciscana (Kellogg 1906), from the Great Salt Lake, USA. The genome is 1GB, and the majority of the genome (81%) is scaffolded into 21 linkage groups using a previously published high-density linkage map. We performed coverage and FST analyses using male and female genomic and transcriptomic reads to quantify the extent of differentiation between the Z and W chromosomes. Additionally, we quantified the expression levels in male and female heads and gonads and found further evidence for dosage compensation in this species."}],"type":"research_data","status":"public","related_material":{"record":[{"status":"public","id":"15009","relation":"used_in_publication"}]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"has_accepted_license":"1","date_published":"2024-01-02T00:00:00Z","department":[{"_id":"GradSch"},{"_id":"BeVi"}],"project":[{"_id":"34ae1506-11ca-11ed-8bc3-c14f4c474396","name":"The highjacking of meiosis for asexual reproduction","grant_number":"F8810"}],"contributor":[{"first_name":"Vincent K","contributor_type":"researcher","id":"57854184-AAE0-11E9-8D04-98D6E5697425","last_name":"Bett"},{"first_name":"Ariana","contributor_type":"project_member","id":"2A0848E2-F248-11E8-B48F-1D18A9856A87","last_name":"Macon"},{"last_name":"Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","contributor_type":"supervisor","orcid":"0000-0002-4579-8306","first_name":"Beatriz"},{"orcid":"0000-0002-5328-7231","first_name":"Marwan N","contributor_type":"researcher","id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","last_name":"Elkrewi"}],"day":"02","_id":"14705","date_created":"2023-12-22T13:40:48Z","ddc":["576"],"oa":1,"keyword":["sex chromosome evolution","genome assembly","dosage compensation"],"file":[{"content_type":"text/plain","creator":"melkrewi","checksum":"bdaf1392867786634ec5466d528c36ca","relation":"main_file","file_size":847,"access_level":"open_access","date_created":"2023-12-22T13:54:21Z","file_name":"readme.txt.txt","file_id":"14707","success":1,"date_updated":"2023-12-22T13:54:21Z"},{"creator":"melkrewi","content_type":"application/x-zip-compressed","checksum":"973e1cbdab923a71709782177980829f","date_created":"2023-12-22T14:14:06Z","access_level":"open_access","file_size":343632753,"relation":"main_file","date_updated":"2023-12-22T14:14:06Z","file_id":"14708","file_name":"data_artemia_franciscana_genome.zip","success":1}],"citation":{"apa":"Elkrewi, M. N. (2024). Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14705","short":"M.N. Elkrewi, (2024).","mla":"Elkrewi, Marwan N. Data from “Chromosome-Level Assembly of Artemia Franciscana Sheds Light on Sex-Chromosome Differentiation.” Institute of Science and Technology Austria, 2024, doi:10.15479/AT:ISTA:14705.","ieee":"M. N. Elkrewi, “Data from ‘Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.’” Institute of Science and Technology Austria, 2024.","ama":"Elkrewi MN. Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.” 2024. doi:10.15479/AT:ISTA:14705","chicago":"Elkrewi, Marwan N. “Data from ‘Chromosome-Level Assembly of Artemia Franciscana Sheds Light on Sex-Chromosome Differentiation.’” Institute of Science and Technology Austria, 2024. https://doi.org/10.15479/AT:ISTA:14705.","ista":"Elkrewi MN. 2024. Data from ‘Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:14705."},"month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","full_name":"Elkrewi, Marwan N","last_name":"Elkrewi","orcid":"0000-0002-5328-7231","first_name":"Marwan N"}],"doi":"10.15479/AT:ISTA:14705","corr_author":"1","year":"2024","date_updated":"2025-09-04T12:05:42Z","publisher":"Institute of Science and Technology Austria","title":"Data from \"Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation\""},{"publication":"The Plant Cell","year":"2024","publisher":"Oxford University Press","date_updated":"2024-07-16T11:18:46Z","title":"The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize","publication_identifier":{"issn":["1040-4651"],"eissn":["1532-298X"]},"citation":{"ista":"Zhou L-Z, Wang L, Chen X, Ge Z, Mergner J, Li X, Küster B, Längst G, Qu L-J, Dresselhaus T. 2024. The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. The Plant Cell. 36(5), koad324.","ama":"Zhou L-Z, Wang L, Chen X, et al. The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. The Plant Cell. 2024;36(5). doi:10.1093/plcell/koad324","chicago":"Zhou, Liang-Zi, Lele Wang, Xia Chen, Zengxiang Ge, Julia Mergner, Xingli Li, Bernhard Küster, Gernot Längst, Li-Jia Qu, and Thomas Dresselhaus. “The RALF Signaling Pathway Regulates Cell Wall Integrity during Pollen Tube Growth in Maize.” The Plant Cell. Oxford University Press, 2024. https://doi.org/10.1093/plcell/koad324.","mla":"Zhou, Liang-Zi, et al. “The RALF Signaling Pathway Regulates Cell Wall Integrity during Pollen Tube Growth in Maize.” The Plant Cell, vol. 36, no. 5, koad324, Oxford University Press, 2024, doi:10.1093/plcell/koad324.","ieee":"L.-Z. Zhou et al., “The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize,” The Plant Cell, vol. 36, no. 5. Oxford University Press, 2024.","short":"L.-Z. Zhou, L. Wang, X. Chen, Z. Ge, J. Mergner, X. Li, B. Küster, G. Längst, L.-J. Qu, T. Dresselhaus, The Plant Cell 36 (2024).","apa":"Zhou, L.-Z., Wang, L., Chen, X., Ge, Z., Mergner, J., Li, X., … Dresselhaus, T. (2024). The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koad324"},"external_id":{"pmid":["38142229"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"05","doi":"10.1093/plcell/koad324","author":[{"last_name":"Zhou","full_name":"Zhou, Liang-Zi","first_name":"Liang-Zi"},{"first_name":"Lele","last_name":"Wang","full_name":"Wang, Lele"},{"first_name":"Xia","last_name":"Chen","full_name":"Chen, Xia"},{"id":"f43371a3-09ff-11eb-8013-bd0c6a2f6de8","full_name":"Ge, Zengxiang","last_name":"Ge","orcid":"0000-0001-9381-3577","first_name":"Zengxiang"},{"first_name":"Julia","last_name":"Mergner","full_name":"Mergner, Julia"},{"full_name":"Li, Xingli","last_name":"Li","first_name":"Xingli"},{"first_name":"Bernhard","full_name":"Küster, Bernhard","last_name":"Küster"},{"last_name":"Längst","full_name":"Längst, Gernot","first_name":"Gernot"},{"full_name":"Qu, Li-Jia","last_name":"Qu","first_name":"Li-Jia"},{"first_name":"Thomas","last_name":"Dresselhaus","full_name":"Dresselhaus, Thomas"}],"keyword":["Cell Biology","Plant Science"],"issue":"5","publication_status":"published","day":"01","_id":"14726","date_created":"2024-01-02T11:19:37Z","ddc":["580"],"oa":1,"pmid":1,"has_accepted_license":"1","date_published":"2024-05-01T00:00:00Z","article_number":"koad324","scopus_import":"1","extern":"1","status":"public","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"volume":36,"intvolume":" 36","article_type":"original","quality_controlled":"1","article_processing_charge":"No","oa_version":"Published Version","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://doi.org/10.1093/plcell/koad324","open_access":"1"}],"abstract":[{"lang":"eng","text":"Autocrine signaling pathways regulated by RAPID ALKALINIZATION FACTORs (RALFs) control cell wall integrity during pollen tube germination and growth in Arabidopsis (Arabidopsis thaliana). To investigate the role of pollen-specific RALFs in another plant species, we combined gene expression data with phylogenetic and biochemical studies to identify candidate orthologs in maize (Zea mays). We show that Clade IB ZmRALF2/3 mutations, but not Clade III ZmRALF1/5 mutations, cause cell wall instability in the sub-apical region of the growing pollen tube. ZmRALF2/3 are mainly located in the cell wall and are partially able to complement the pollen germination defect of their Arabidopsis orthologs AtRALF4/19. Mutations in ZmRALF2/3 compromise pectin distribution patterns leading to altered cell wall organization and thickness culminating in pollen tube burst. Clade IB, but not Clade III ZmRALFs, strongly interact as ligands with the pollen-specific Catharanthus roseus RLK1-like (CrRLK1L) receptor kinases Zea mays FERONIA-like (ZmFERL) 4/7/9, LORELEI-like glycosylphosphatidylinositol-anchor (LLG) proteins Zea mays LLG 1 and 2 (ZmLLG1/2) and Zea mays pollen extension-like (PEX) cell wall proteins ZmPEX2/4. Notably, ZmFERL4 outcompetes ZmLLG2 and ZmPEX2 outcompetes ZmFERL4 for ZmRALF2 binding. Based on these data, we suggest that Clade IB RALFs act in a dual role as cell wall components and extracellular sensors to regulate cell wall integrity and thickness during pollen tube growth in maize and probably other plants."}]},{"pmid":1,"project":[{"grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"has_accepted_license":"1","date_published":"2024-01-22T00:00:00Z","isi":1,"department":[{"_id":"StFr"}],"scopus_import":"1","status":"public","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"intvolume":" 7","volume":7,"quality_controlled":"1","article_type":"original","article_processing_charge":"Yes (in subscription journal)","page":"414-426","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://doi.org/10.1021/acsaem.3c02223","open_access":"1"}],"oa_version":"Published Version","file_date_updated":"2024-07-16T11:59:24Z","abstract":[{"lang":"eng","text":"Redox flow batteries (RFBs) rely on the development of cheap, highly soluble, and high-energy-density electrolytes. Several candidate quinones have already been investigated in the literature as two-electron anolytes or catholytes, benefiting from fast kinetics, high tunability, and low cost. Here, an investigation of nitrogen-rich fused heteroaromatic quinones was carried out to explore avenues for electrolyte development. These quinones were synthesized and screened by using electrochemical techniques. The most promising candidate, 4,8-dioxo-4,8-dihydrobenzo[1,2-d:4,5-d′]bis([1,2,3]triazole)-1,5-diide (−0.68 V(SHE)), was tested in both an asymmetric and symmetric full-cell setup resulting in capacity fade rates of 0.35% per cycle and 0.0124% per cycle, respectively. In situ ultraviolet-visible spectroscopy (UV–Vis), nuclear magnetic resonance (NMR), and electron paramagnetic resonance (EPR) spectroscopies were used to investigate the electrochemical stability of the charged species during operation. UV–Vis spectroscopy, supported by density functional theory (DFT) modeling, reaffirmed that the two-step charging mechanism observed during battery operation consisted of two, single-electron transfers. The radical concentration during battery operation and the degree of delocalization of the unpaired electron were quantified with NMR and EPR spectroscopy."}],"publication":"ACS Applied Energy Materials","publisher":"American Chemical Society","date_updated":"2025-09-04T11:36:32Z","year":"2024","publication_identifier":{"eissn":["2574-0962"]},"title":"Exploring the landscape of heterocyclic quinones for redox flow batteries","citation":{"mla":"Jethwa, Rajesh B., et al. “Exploring the Landscape of Heterocyclic Quinones for Redox Flow Batteries.” ACS Applied Energy Materials, vol. 7, no. 2, American Chemical Society, 2024, pp. 414–26, doi:10.1021/acsaem.3c02223.","ieee":"R. B. Jethwa, D. Hey, R. N. Kerber, A. D. Bond, D. S. Wright, and C. P. Grey, “Exploring the landscape of heterocyclic quinones for redox flow batteries,” ACS Applied Energy Materials, vol. 7, no. 2. American Chemical Society, pp. 414–426, 2024.","apa":"Jethwa, R. B., Hey, D., Kerber, R. N., Bond, A. D., Wright, D. S., & Grey, C. P. (2024). Exploring the landscape of heterocyclic quinones for redox flow batteries. ACS Applied Energy Materials. American Chemical Society. https://doi.org/10.1021/acsaem.3c02223","short":"R.B. Jethwa, D. Hey, R.N. Kerber, A.D. Bond, D.S. Wright, C.P. Grey, ACS Applied Energy Materials 7 (2024) 414–426.","ista":"Jethwa RB, Hey D, Kerber RN, Bond AD, Wright DS, Grey CP. 2024. Exploring the landscape of heterocyclic quinones for redox flow batteries. ACS Applied Energy Materials. 7(2), 414–426.","ama":"Jethwa RB, Hey D, Kerber RN, Bond AD, Wright DS, Grey CP. Exploring the landscape of heterocyclic quinones for redox flow batteries. ACS Applied Energy Materials. 2024;7(2):414-426. doi:10.1021/acsaem.3c02223","chicago":"Jethwa, Rajesh B, Dominic Hey, Rachel N. Kerber, Andrew D. Bond, Dominic S. Wright, and Clare P. Grey. “Exploring the Landscape of Heterocyclic Quinones for Redox Flow Batteries.” ACS Applied Energy Materials. American Chemical Society, 2024. https://doi.org/10.1021/acsaem.3c02223."},"external_id":{"isi":["001146733200001"],"pmid":["38273966"]},"author":[{"last_name":"Jethwa","full_name":"Jethwa, Rajesh B","id":"4cc538d5-803f-11ed-ab7e-8139573aad8f","first_name":"Rajesh B","orcid":"0000-0002-0404-4356"},{"first_name":"Dominic","last_name":"Hey","full_name":"Hey, Dominic"},{"first_name":"Rachel N.","full_name":"Kerber, Rachel N.","last_name":"Kerber"},{"first_name":"Andrew D.","last_name":"Bond","full_name":"Bond, Andrew D."},{"first_name":"Dominic S.","last_name":"Wright","full_name":"Wright, Dominic S."},{"full_name":"Grey, Clare P.","last_name":"Grey","first_name":"Clare P."}],"doi":"10.1021/acsaem.3c02223","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","keyword":["Electrical and Electronic Engineering","Materials Chemistry","Electrochemistry","Energy Engineering and Power Technology","Chemical Engineering (miscellaneous)"],"issue":"2","file":[{"file_id":"17262","file_name":"2024_ACSAppElecMaterials_Jethwa.pdf","success":1,"date_updated":"2024-07-16T11:59:24Z","content_type":"application/pdf","checksum":"2841e86a041d249ac0df2531b7f9aec1","creator":"dernst","access_level":"open_access","date_created":"2024-07-16T11:59:24Z","file_size":5607177,"relation":"main_file"}],"publication_status":"published","ec_funded":1,"_id":"14733","day":"22","ddc":["540"],"date_created":"2024-01-05T09:20:48Z","oa":1},{"pmid":1,"project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"acknowledgement":"Y.L. acknowledges funding from the National Natural Science Foundation of China (NSFC) (Grants No. 22209034), the Innovation and Entrepreneurship Project of Overseas Returnees in Anhui Province (Grant No. 2022LCX002). K.H.L. acknowledges financial support from the National Natural Science Foundation of China (NSFC) (Grant No. 22208293). M.I. acknowledges financial support from ISTA and the Werner Siemens Foundation.","article_number":"2301377","date_published":"2024-08-01T00:00:00Z","isi":1,"department":[{"_id":"MaIb"}],"scopus_import":"1","type":"journal_article","status":"public","intvolume":" 8","volume":8,"article_type":"original","quality_controlled":"1","article_processing_charge":"No","oa_version":"None","language":[{"iso":"eng"}],"abstract":[{"text":"Developing cost-effective and high-performance thermoelectric (TE) materials to assemble efficient TE devices presents a multitude of challenges and opportunities. Cu3SbSe4 is a promising p-type TE material based on relatively earth abundant elements. However, the challenge lies in its poor electrical conductivity. Herein, an efficient and scalable solution-based approach is developed to synthesize high-quality Cu3SbSe4 nanocrystals doped with Pb at the Sb site. After ligand displacement and annealing treatments, the dried powders are consolidated into dense pellets, and their TE properties are investigated. Pb doping effectively increases the charge carrier concentration, resulting in a significant increase in electrical conductivity, while the Seebeck coefficients remain consistently high. The calculated band structure shows that Pb doping induces band convergence, thereby increasing the effective mass. Furthermore, the large ionic radius of Pb2+ results in the generation of additional point and plane defects and interphases, dramatically enhancing phonon scattering, which significantly decreases the lattice thermal conductivity at high temperatures. Overall, a maximum figure of merit (zTmax) ≈ 0.85 at 653 K is obtained in Cu3Sb0.97Pb0.03Se4. This represents a 1.6-fold increase compared to the undoped sample and exceeds most doped Cu3SbSe4-based materials produced by solid-state, demonstrating advantages of versatility and cost-effectiveness using a solution-based technology.","lang":"eng"}],"publication":"Small Methods","year":"2024","publisher":"Wiley","date_updated":"2025-09-04T11:37:19Z","title":"Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4","publication_identifier":{"eissn":["2366-9608"]},"citation":{"chicago":"Wan, Shanhong, Shanshan Xiao, Mingquan Li, Xin Wang, Khak Ho Lim, Min Hong, Maria Ibáñez, Andreu Cabot, and Yu Liu. “Band Engineering through Pb-Doping of Nanocrystal Building Blocks to Enhance Thermoelectric Performance in Cu3SbSe4.” Small Methods. Wiley, 2024. https://doi.org/10.1002/smtd.202301377.","ama":"Wan S, Xiao S, Li M, et al. Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. Small Methods. 2024;8(8). doi:10.1002/smtd.202301377","ista":"Wan S, Xiao S, Li M, Wang X, Lim KH, Hong M, Ibáñez M, Cabot A, Liu Y. 2024. Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. Small Methods. 8(8), 2301377.","short":"S. Wan, S. Xiao, M. Li, X. Wang, K.H. Lim, M. Hong, M. Ibáñez, A. Cabot, Y. Liu, Small Methods 8 (2024).","apa":"Wan, S., Xiao, S., Li, M., Wang, X., Lim, K. H., Hong, M., … Liu, Y. (2024). Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. Small Methods. Wiley. https://doi.org/10.1002/smtd.202301377","ieee":"S. Wan et al., “Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4,” Small Methods, vol. 8, no. 8. Wiley, 2024.","mla":"Wan, Shanhong, et al. “Band Engineering through Pb-Doping of Nanocrystal Building Blocks to Enhance Thermoelectric Performance in Cu3SbSe4.” Small Methods, vol. 8, no. 8, 2301377, Wiley, 2024, doi:10.1002/smtd.202301377."},"external_id":{"pmid":["38152986"],"isi":["001133369800001"]},"month":"08","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"first_name":"Shanhong","last_name":"Wan","full_name":"Wan, Shanhong"},{"first_name":"Shanshan","last_name":"Xiao","full_name":"Xiao, Shanshan"},{"first_name":"Mingquan","full_name":"Li, Mingquan","last_name":"Li"},{"first_name":"Xin","full_name":"Wang, Xin","last_name":"Wang"},{"first_name":"Khak Ho","full_name":"Lim, Khak Ho","last_name":"Lim"},{"full_name":"Hong, Min","last_name":"Hong","first_name":"Min"},{"first_name":"Maria","orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"},{"first_name":"Yu","orcid":"0000-0001-7313-6740","last_name":"Liu","full_name":"Liu, Yu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87"}],"doi":"10.1002/smtd.202301377","issue":"8","publication_status":"published","OA_type":"closed access","day":"01","_id":"14734","date_created":"2024-01-07T23:00:51Z"},{"publication_status":"published","date_created":"2024-09-06T12:38:44Z","oa":1,"OA_type":"gold","day":"16","_id":"17852","title":"Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions","publication_identifier":{"issn":["2041-1723"]},"publication":"Nature Communications","year":"2024","publisher":"Springer Nature","date_updated":"2024-11-18T10:47:10Z","month":"02","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Woojung","full_name":"Lee, Woojung","last_name":"Lee"},{"last_name":"Li","full_name":"Li, Liang","first_name":"Liang"},{"last_name":"Camarasa-Gómez","full_name":"Camarasa-Gómez, María","first_name":"María"},{"last_name":"Hernangómez-Pérez","full_name":"Hernangómez-Pérez, Daniel","first_name":"Daniel"},{"last_name":"Roy","full_name":"Roy, Xavier","first_name":"Xavier"},{"first_name":"Ferdinand","full_name":"Evers, Ferdinand","last_name":"Evers"},{"first_name":"Michael S.","full_name":"Inkpen, Michael S.","last_name":"Inkpen"},{"full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","last_name":"Venkataraman","orcid":"0000-0002-6957-6089","first_name":"Latha"}],"doi":"10.1038/s41467-024-45707-z","citation":{"ama":"Lee W, Li L, Camarasa-Gómez M, et al. Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions. Nature Communications. 2024;15. doi:10.1038/s41467-024-45707-z","chicago":"Lee, Woojung, Liang Li, María Camarasa-Gómez, Daniel Hernangómez-Pérez, Xavier Roy, Ferdinand Evers, Michael S. Inkpen, and Latha Venkataraman. “Photooxidation Driven Formation of Fe-Au Linked Ferrocene-Based Single-Molecule Junctions.” Nature Communications. Springer Nature, 2024. https://doi.org/10.1038/s41467-024-45707-z.","ista":"Lee W, Li L, Camarasa-Gómez M, Hernangómez-Pérez D, Roy X, Evers F, Inkpen MS, Venkataraman L. 2024. Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions. Nature Communications. 15, 1439.","short":"W. Lee, L. Li, M. Camarasa-Gómez, D. Hernangómez-Pérez, X. Roy, F. Evers, M.S. Inkpen, L. Venkataraman, Nature Communications 15 (2024).","apa":"Lee, W., Li, L., Camarasa-Gómez, M., Hernangómez-Pérez, D., Roy, X., Evers, F., … Venkataraman, L. (2024). Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-024-45707-z","mla":"Lee, Woojung, et al. “Photooxidation Driven Formation of Fe-Au Linked Ferrocene-Based Single-Molecule Junctions.” Nature Communications, vol. 15, 1439, Springer Nature, 2024, doi:10.1038/s41467-024-45707-z.","ieee":"W. Lee et al., “Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions,” Nature Communications, vol. 15. Springer Nature, 2024."},"external_id":{"pmid":["38365892"]},"volume":15,"intvolume":" 15","extern":"1","type":"journal_article","status":"public","oa_version":"Published Version","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/s41467-024-45707-z"}],"abstract":[{"text":"Metal-metal contacts, though not yet widely realized, may provide exciting opportunities to serve as tunable and functional interfaces in single-molecule devices. One of the simplest components which might facilitate such binding interactions is the ferrocene group. Notably, direct bonds between the ferrocene iron center and metals such as Pd or Co have been demonstrated in molecular complexes comprising coordinating ligands attached to the cyclopentadienyl rings. Here, we demonstrate that ferrocene-based single-molecule devices with Fe-Au interfacial contact geometries form at room temperature in the absence of supporting coordinating ligands. Applying a photoredox reaction, we propose that ferrocene only functions effectively as a contact group when oxidized, binding to gold through a formal Fe3+ center. This observation is further supported by a series of control measurements and density functional theory calculations. Our findings extend the scope of junction contact chemistries beyond those involving main group elements, lay the foundation for light switchable ferrocene-based single-molecule devices, and highlight new potential mechanistic function(s) of unsubstituted ferrocenium groups in synthetic processes.","lang":"eng"}],"article_type":"original","quality_controlled":"1","article_processing_charge":"Yes","pmid":1,"OA_place":"publisher","scopus_import":"1","DOAJ_listed":"1","date_published":"2024-02-16T00:00:00Z","article_number":"1439"},{"issue":"24","publication_status":"published","date_created":"2024-09-06T12:40:17Z","OA_type":"closed access","day":"24","_id":"17853","title":"Long-range gating in single-molecule one-dimensional topological insulators","publication_identifier":{"eissn":["1520-5126"],"issn":["0002-7863"]},"publication":"Journal of the American Chemical Society","year":"2024","date_updated":"2024-11-18T10:51:21Z","publisher":"American Chemical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"06","doi":"10.1021/jacs.4c05699","author":[{"last_name":"Li","full_name":"Li, Liang","first_name":"Liang"},{"last_name":"Louie","full_name":"Louie, Shayan","first_name":"Shayan"},{"first_name":"Nicholas M.","last_name":"Orchanian","full_name":"Orchanian, Nicholas M."},{"first_name":"Colin","last_name":"Nuckolls","full_name":"Nuckolls, Colin"},{"full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","last_name":"Venkataraman","first_name":"Latha","orcid":"0000-0002-6957-6089"}],"external_id":{"pmid":["38832840"]},"citation":{"ista":"Li L, Louie S, Orchanian NM, Nuckolls C, Venkataraman L. 2024. Long-range gating in single-molecule one-dimensional topological insulators. Journal of the American Chemical Society. 146(24), 16920–16925.","chicago":"Li, Liang, Shayan Louie, Nicholas M. Orchanian, Colin Nuckolls, and Latha Venkataraman. “Long-Range Gating in Single-Molecule One-Dimensional Topological Insulators.” Journal of the American Chemical Society. American Chemical Society, 2024. https://doi.org/10.1021/jacs.4c05699.","ama":"Li L, Louie S, Orchanian NM, Nuckolls C, Venkataraman L. Long-range gating in single-molecule one-dimensional topological insulators. Journal of the American Chemical Society. 2024;146(24):16920-16925. doi:10.1021/jacs.4c05699","ieee":"L. Li, S. Louie, N. M. Orchanian, C. Nuckolls, and L. Venkataraman, “Long-range gating in single-molecule one-dimensional topological insulators,” Journal of the American Chemical Society, vol. 146, no. 24. American Chemical Society, pp. 16920–16925, 2024.","mla":"Li, Liang, et al. “Long-Range Gating in Single-Molecule One-Dimensional Topological Insulators.” Journal of the American Chemical Society, vol. 146, no. 24, American Chemical Society, 2024, pp. 16920–25, doi:10.1021/jacs.4c05699.","short":"L. Li, S. Louie, N.M. Orchanian, C. Nuckolls, L. Venkataraman, Journal of the American Chemical Society 146 (2024) 16920–16925.","apa":"Li, L., Louie, S., Orchanian, N. M., Nuckolls, C., & Venkataraman, L. (2024). Long-range gating in single-molecule one-dimensional topological insulators. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.4c05699"},"volume":146,"intvolume":" 146","extern":"1","status":"public","type":"journal_article","oa_version":"None","page":"16920-16925","language":[{"iso":"eng"}],"abstract":[{"text":"Single-molecule one-dimensional topological insulator (1D TI) is a class of molecular wires that exhibit increasing conductance with wire length. This unique trend is due to the coupling between the two low-lying topological edge states of 1D TIs described by the Su–Schrieffer–Heeger model. In principle, this quantum phenomenon within 1D TIs can be utilized to achieve long-range gating in molecular conductors. Here, we study electron transport through a single-edge state of doubly oxidized oligophenylene bis(triarylamine) to understand the effect of the edge state coupling on conductance. We find that conductance is elevated by approximately 1 order of magnitude compared to a control molecule with the same conductance pathway. Density function theory calculations further support that the increase in conductance is due to the interaction between the edge states of 1D TIs. This work demonstrates a new gating paradigm in molecular electronics, while also providing a deeper understanding of how edge states interact and affect electron transport within 1D TIs.","lang":"eng"}],"article_type":"original","quality_controlled":"1","article_processing_charge":"No","pmid":1,"scopus_import":"1","date_published":"2024-06-24T00:00:00Z"},{"language":[{"iso":"eng"}],"page":"1319-1324","oa_version":"None","abstract":[{"lang":"eng","text":"As social media platforms continue to grow in popularity, there is an increasing need for science outreach teams to bring STEM content to the virtual landscape. Here, we highlight the use of short-form videos on our TikTok channel─@IvyLeagueScience─as a new way to approach science outreach. Through a combination of content production and data analytics, we were able to build an online platform with >150k followers, 3.6 million likes, and 18 million views. By bringing science to social media, we engage with students across the world, allowing them to experience science-based content. In this case study, we hope to encourage other scientific outreach teams to employ social media as a means of increasing visibility of scientists and STEM careers."}],"quality_controlled":"1","article_type":"original","article_processing_charge":"No","intvolume":" 101","volume":101,"extern":"1","status":"public","type":"journal_article","scopus_import":"1","date_published":"2024-02-14T00:00:00Z","date_created":"2024-09-06T12:43:20Z","OA_type":"closed access","_id":"17854","day":"14","issue":"3","publication_status":"published","author":[{"first_name":"Claudia R.","last_name":"Prindle","full_name":"Prindle, Claudia R."},{"full_name":"Orchanian, Nicholas M.","last_name":"Orchanian","first_name":"Nicholas M."},{"full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","last_name":"Venkataraman","orcid":"0000-0002-6957-6089","first_name":"Latha"},{"first_name":"Colin","full_name":"Nuckolls, Colin","last_name":"Nuckolls"}],"doi":"10.1021/acs.jchemed.3c01185","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","citation":{"ista":"Prindle CR, Orchanian NM, Venkataraman L, Nuckolls C. 2024. Short-form videos as an emerging social media tool for STEM edutainment. Journal of Chemical Education. 101(3), 1319–1324.","chicago":"Prindle, Claudia R., Nicholas M. Orchanian, Latha Venkataraman, and Colin Nuckolls. “Short-Form Videos as an Emerging Social Media Tool for STEM Edutainment.” Journal of Chemical Education. American Chemical Society, 2024. https://doi.org/10.1021/acs.jchemed.3c01185.","ama":"Prindle CR, Orchanian NM, Venkataraman L, Nuckolls C. Short-form videos as an emerging social media tool for STEM edutainment. Journal of Chemical Education. 2024;101(3):1319-1324. doi:10.1021/acs.jchemed.3c01185","ieee":"C. R. Prindle, N. M. Orchanian, L. Venkataraman, and C. Nuckolls, “Short-form videos as an emerging social media tool for STEM edutainment,” Journal of Chemical Education, vol. 101, no. 3. American Chemical Society, pp. 1319–1324, 2024.","mla":"Prindle, Claudia R., et al. “Short-Form Videos as an Emerging Social Media Tool for STEM Edutainment.” Journal of Chemical Education, vol. 101, no. 3, American Chemical Society, 2024, pp. 1319–24, doi:10.1021/acs.jchemed.3c01185.","short":"C.R. Prindle, N.M. Orchanian, L. Venkataraman, C. Nuckolls, Journal of Chemical Education 101 (2024) 1319–1324.","apa":"Prindle, C. R., Orchanian, N. M., Venkataraman, L., & Nuckolls, C. (2024). Short-form videos as an emerging social media tool for STEM edutainment. Journal of Chemical Education. American Chemical Society. https://doi.org/10.1021/acs.jchemed.3c01185"},"publication_identifier":{"eissn":["1938-1328"],"issn":["0021-9584"]},"title":"Short-form videos as an emerging social media tool for STEM edutainment","publication":"Journal of Chemical Education","date_updated":"2024-11-18T10:55:30Z","publisher":"American Chemical Society","year":"2024"},{"pmid":1,"scopus_import":"1","date_published":"2024-02-05T00:00:00Z","intvolume":" 24","volume":24,"type":"journal_article","status":"public","extern":"1","abstract":[{"lang":"eng","text":"Biased metal–molecule–metal junctions emit light through electroluminescence, a phenomenon at the intersection of molecular electronics and nanoplasmonics. This can occur when the junction plasmon mode is excited by inelastic electron current fluctuations. Here, we simultaneously measure the conductance and electroluminescence intensity from single-molecule junctions with time resolution in a solution environment at room temperature. We use current versus bias data to determine the molecular junction transport parameters and then relate these to the expected current shot noise. We find that the electroluminescence signal accurately matches the theoretical prediction of shot-noise-driven emission in a large fraction of the molecular junctions studied. This introduces a novel experimental method for qualitatively estimating finite-frequency shot noise in single-molecule junctions under ambient conditions. We further demonstrate that electroluminescence can be used to obtain the level alignment of the frontier orbital dominating transport in the molecular junction."}],"page":"1931-1935","language":[{"iso":"eng"}],"oa_version":"None","article_processing_charge":"No","quality_controlled":"1","article_type":"letter_note","publication_identifier":{"issn":["1530-6984","1530-6992"]},"title":"Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions","publisher":"American Chemical Society","date_updated":"2024-11-18T10:58:19Z","year":"2024","publication":"Nano Letters","doi":"10.1021/acs.nanolett.3c04207","author":[{"first_name":"Angela L.","last_name":"Paoletta","full_name":"Paoletta, Angela L."},{"full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","last_name":"Venkataraman","orcid":"0000-0002-6957-6089","first_name":"Latha"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","citation":{"ista":"Paoletta AL, Venkataraman L. 2024. Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions. Nano Letters. 24(6), 1931–1935.","chicago":"Paoletta, Angela L., and Latha Venkataraman. “Determining Transmission Characteristics from Shot-Noise-Driven Electroluminescence in Single-Molecule Junctions.” Nano Letters. American Chemical Society, 2024. https://doi.org/10.1021/acs.nanolett.3c04207.","ama":"Paoletta AL, Venkataraman L. Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions. Nano Letters. 2024;24(6):1931-1935. doi:10.1021/acs.nanolett.3c04207","ieee":"A. L. Paoletta and L. Venkataraman, “Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions,” Nano Letters, vol. 24, no. 6. American Chemical Society, pp. 1931–1935, 2024.","mla":"Paoletta, Angela L., and Latha Venkataraman. “Determining Transmission Characteristics from Shot-Noise-Driven Electroluminescence in Single-Molecule Junctions.” Nano Letters, vol. 24, no. 6, American Chemical Society, 2024, pp. 1931–35, doi:10.1021/acs.nanolett.3c04207.","apa":"Paoletta, A. L., & Venkataraman, L. (2024). Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.3c04207","short":"A.L. Paoletta, L. Venkataraman, Nano Letters 24 (2024) 1931–1935."},"external_id":{"pmid":["38315038"]},"publication_status":"published","issue":"6","date_created":"2024-09-06T12:44:24Z","_id":"17855","day":"05"},{"publication":"Journal of the American Chemical Society","publisher":"American Chemical Society","date_updated":"2024-11-18T11:02:24Z","year":"2024","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"title":"Effective gating in single-molecule junctions through fano resonances","external_id":{"pmid":["38293735"]},"citation":{"ieee":"C. R. Prindle et al., “Effective gating in single-molecule junctions through fano resonances,” Journal of the American Chemical Society, vol. 146, no. 6. American Chemical Society, pp. 3646–3650, 2024.","mla":"Prindle, Claudia R., et al. “Effective Gating in Single-Molecule Junctions through Fano Resonances.” Journal of the American Chemical Society, vol. 146, no. 6, American Chemical Society, 2024, pp. 3646–50, doi:10.1021/jacs.3c14226.","short":"C.R. Prindle, W. Shi, L. Li, J. Dahl Jensen, B.W. Laursen, M.L. Steigerwald, C. Nuckolls, L. Venkataraman, Journal of the American Chemical Society 146 (2024) 3646–3650.","apa":"Prindle, C. R., Shi, W., Li, L., Dahl Jensen, J., Laursen, B. W., Steigerwald, M. L., … Venkataraman, L. (2024). Effective gating in single-molecule junctions through fano resonances. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.3c14226","ista":"Prindle CR, Shi W, Li L, Dahl Jensen J, Laursen BW, Steigerwald ML, Nuckolls C, Venkataraman L. 2024. Effective gating in single-molecule junctions through fano resonances. Journal of the American Chemical Society. 146(6), 3646–3650.","chicago":"Prindle, Claudia R., Wanzhuo Shi, Liang Li, Jesper Dahl Jensen, Bo W. Laursen, Michael L. Steigerwald, Colin Nuckolls, and Latha Venkataraman. “Effective Gating in Single-Molecule Junctions through Fano Resonances.” Journal of the American Chemical Society. American Chemical Society, 2024. https://doi.org/10.1021/jacs.3c14226.","ama":"Prindle CR, Shi W, Li L, et al. Effective gating in single-molecule junctions through fano resonances. Journal of the American Chemical Society. 2024;146(6):3646-3650. doi:10.1021/jacs.3c14226"},"doi":"10.1021/jacs.3c14226","author":[{"full_name":"Prindle, Claudia R.","last_name":"Prindle","first_name":"Claudia R."},{"full_name":"Shi, Wanzhuo","last_name":"Shi","first_name":"Wanzhuo"},{"last_name":"Li","full_name":"Li, Liang","first_name":"Liang"},{"first_name":"Jesper","last_name":"Dahl Jensen","full_name":"Dahl Jensen, Jesper"},{"first_name":"Bo W.","full_name":"Laursen, Bo W.","last_name":"Laursen"},{"first_name":"Michael L.","full_name":"Steigerwald, Michael L.","last_name":"Steigerwald"},{"full_name":"Nuckolls, Colin","last_name":"Nuckolls","first_name":"Colin"},{"first_name":"Latha","orcid":"0000-0002-6957-6089","last_name":"Venkataraman","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha"}],"month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"6","publication_status":"published","_id":"17856","day":"31","date_created":"2024-09-06T12:45:11Z","pmid":1,"date_published":"2024-01-31T00:00:00Z","scopus_import":"1","extern":"1","type":"journal_article","status":"public","volume":146,"intvolume":" 146","quality_controlled":"1","article_type":"letter_note","article_processing_charge":"No","page":"3646-3650","language":[{"iso":"eng"}],"oa_version":"None","abstract":[{"text":"The successful incorporation of molecules as active circuit elements relies on the ability to tune their electronic properties through chemical design. A synthetic strategy that has been used to manipulate and gate circuit conductance involves attaching a pendant substituent along the molecular conduction pathway. However, such a chemical gate has not yet been shown to significantly modify conductance. Here, we report a novel series of triarylmethylium and triangulenium carbocations gated by different substituents coupled to the delocalized conducting orbitals on the molecular backbone through a Fano resonance. By changing the pendant substituents to modulate the position of the Fano resonance and its coupling to the conducting orbitals, we can regulate the junction conductance by a remarkable factor of 450. This work thus provides a new design principle to enable effective chemical gating of single-molecule devices toward effective molecular transistors.","lang":"eng"}]},{"type":"journal_article","status":"public","extern":"1","volume":24,"intvolume":" 24","article_processing_charge":"No","article_type":"letter_note","quality_controlled":"1","abstract":[{"lang":"eng","text":"Gold–dithiol molecular junctions have been studied both experimentally and theoretically. However, the nature of the gold–thiolate bond as it relates to the solvent has seldom been investigated. It is known that solvents can impact the electronic structure of single-molecule junctions, but the correlation between the solvent and dithiol-linked single-molecule junction conductance is not well understood. We study molecular junctions formed with thiol-terminated phenylenes from both 1-chloronaphthalene and 1-bromonaphthalene solutions. We find that the most probable conductance and the distribution of conductances are both affected by the solvent. First-principles calculations show that junction conductance depends on the binding configurations (adatom, atop, and bridge) of the thiolate on the Au surface, as has been shown previously. More importantly, we find that brominated solvents can restrict the binding of thiols to specific Au sites. This mechanism offers new insight into the effects of the solvent environment on covalent bonding in molecular junctions."}],"oa_version":"None","page":"703-707","language":[{"iso":"eng"}],"pmid":1,"date_published":"2024-01-04T00:00:00Z","scopus_import":"1","publication_status":"published","issue":"2","day":"04","_id":"17857","OA_type":"closed access","date_created":"2024-09-06T12:46:39Z","year":"2024","date_updated":"2024-11-19T12:50:27Z","publisher":"American Chemical Society","publication":"Nano Letters","title":"Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions","publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"citation":{"chicago":"Dalmieda, Johnson, Wanzhuo Shi, Liang Li, and Latha Venkataraman. “Solvent-Mediated Modulation of the Au–S Bond in Dithiol Molecular Junctions.” Nano Letters. American Chemical Society, 2024. https://doi.org/10.1021/acs.nanolett.3c04058.","ama":"Dalmieda J, Shi W, Li L, Venkataraman L. Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions. Nano Letters. 2024;24(2):703-707. doi:10.1021/acs.nanolett.3c04058","ista":"Dalmieda J, Shi W, Li L, Venkataraman L. 2024. Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions. Nano Letters. 24(2), 703–707.","apa":"Dalmieda, J., Shi, W., Li, L., & Venkataraman, L. (2024). Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.3c04058","short":"J. Dalmieda, W. Shi, L. Li, L. Venkataraman, Nano Letters 24 (2024) 703–707.","ieee":"J. Dalmieda, W. Shi, L. Li, and L. Venkataraman, “Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions,” Nano Letters, vol. 24, no. 2. American Chemical Society, pp. 703–707, 2024.","mla":"Dalmieda, Johnson, et al. “Solvent-Mediated Modulation of the Au–S Bond in Dithiol Molecular Junctions.” Nano Letters, vol. 24, no. 2, American Chemical Society, 2024, pp. 703–07, doi:10.1021/acs.nanolett.3c04058."},"external_id":{"pmid":["38175934"]},"month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1021/acs.nanolett.3c04058","author":[{"last_name":"Dalmieda","full_name":"Dalmieda, Johnson","first_name":"Johnson"},{"full_name":"Shi, Wanzhuo","last_name":"Shi","first_name":"Wanzhuo"},{"last_name":"Li","full_name":"Li, Liang","first_name":"Liang"},{"last_name":"Venkataraman","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha","orcid":"0000-0002-6957-6089","first_name":"Latha"}]},{"publication_status":"published","issue":"30","day":"18","_id":"17859","OA_type":"closed access","date_created":"2024-09-06T12:48:34Z","year":"2024","date_updated":"2024-11-20T15:24:37Z","publisher":"American Chemical Society","publication":"Nano Letters","title":"Impact of solvent electrostatic environment on molecular junctions probed via electrochemical impedance spectroscopy","publication_identifier":{"eissn":["1530-6992"],"issn":["1530-6984"]},"external_id":{"pmid":["39023006"]},"citation":{"ista":"Shi W, Greenwald JE, Venkataraman L. 2024. Impact of solvent electrostatic environment on molecular junctions probed via electrochemical impedance spectroscopy. Nano Letters. 24(30), 9283–9288.","ama":"Shi W, Greenwald JE, Venkataraman L. Impact of solvent electrostatic environment on molecular junctions probed via electrochemical impedance spectroscopy. Nano Letters. 2024;24(30):9283-9288. doi:10.1021/acs.nanolett.4c02103","chicago":"Shi, Wanzhuo, Julia E. Greenwald, and Latha Venkataraman. “Impact of Solvent Electrostatic Environment on Molecular Junctions Probed via Electrochemical Impedance Spectroscopy.” Nano Letters. American Chemical Society, 2024. https://doi.org/10.1021/acs.nanolett.4c02103.","mla":"Shi, Wanzhuo, et al. “Impact of Solvent Electrostatic Environment on Molecular Junctions Probed via Electrochemical Impedance Spectroscopy.” Nano Letters, vol. 24, no. 30, American Chemical Society, 2024, pp. 9283–88, doi:10.1021/acs.nanolett.4c02103.","ieee":"W. Shi, J. E. Greenwald, and L. Venkataraman, “Impact of solvent electrostatic environment on molecular junctions probed via electrochemical impedance spectroscopy,” Nano Letters, vol. 24, no. 30. American Chemical Society, pp. 9283–9288, 2024.","apa":"Shi, W., Greenwald, J. E., & Venkataraman, L. (2024). Impact of solvent electrostatic environment on molecular junctions probed via electrochemical impedance spectroscopy. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.4c02103","short":"W. Shi, J.E. Greenwald, L. Venkataraman, Nano Letters 24 (2024) 9283–9288."},"user_id":"68b8ca59-c5b3-11ee-8790-cd641c68093d","month":"07","author":[{"first_name":"Wanzhuo","full_name":"Shi, Wanzhuo","last_name":"Shi"},{"first_name":"Julia E.","full_name":"Greenwald, Julia E.","last_name":"Greenwald"},{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha","last_name":"Venkataraman","first_name":"Latha","orcid":"0000-0002-6957-6089"}],"doi":"10.1021/acs.nanolett.4c02103","status":"public","type":"journal_article","extern":"1","volume":24,"intvolume":" 24","article_processing_charge":"No","article_type":"original","quality_controlled":"1","abstract":[{"lang":"eng","text":"The electrostatic environment around nanoscale molecular junctions modulates charge transport; solvents alter this environment. Methods to directly probe solvent effects require correlating measurements of the local electrostatic environment with charge transport across the metal–molecule–metal junction. Here, we measure the conductance and current–voltage characteristics of molecular wires using a scanning tunneling microscope–break junction (STM-BJ) setup in two commonly used solvents. Our results show that the solvent environment induces shifts in molecular conductance, which we quantify, but more importantly we find that the solvent also impacts the magnitude of current rectification in molecular junctions. By incorporating electrochemical impedance spectroscopy into the STM-BJ setup, we measure the capacitance of the dipole layer formed at the metal–solvent interface and show that rectification can be correlated with solvent capacitance. These results provide a method of quantifying the impact of the solvent environment and a path toward improved environmental control of molecular devices."}],"oa_version":"None","language":[{"iso":"eng"}],"page":"9283-9288","pmid":1,"date_published":"2024-07-18T00:00:00Z","scopus_import":"1"},{"publication_status":"published","file":[{"date_updated":"2024-09-09T08:56:12Z","file_id":"17946","file_name":"2024_NatureComm_Kofler.pdf","success":1,"checksum":"7c044538a47182c826d1b526c52958a2","creator":"dernst","content_type":"application/pdf","relation":"main_file","file_size":3735024,"access_level":"open_access","date_created":"2024-09-09T08:56:12Z"}],"oa":1,"date_created":"2024-09-08T22:01:10Z","ddc":["570"],"day":"29","_id":"17885","OA_type":"gold","acknowledged_ssus":[{"_id":"EM-Fac"}],"title":"The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation","publication_identifier":{"eissn":["2041-1723"]},"year":"2024","publisher":"Springer Nature","date_updated":"2025-09-08T09:13:01Z","publication":"Nature Communications","month":"08","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"full_name":"Kofler, Lisa","last_name":"Kofler","first_name":"Lisa"},{"first_name":"Lorenz","last_name":"Grundmann","full_name":"Grundmann, Lorenz"},{"first_name":"Magdalena","last_name":"Gerhalter","full_name":"Gerhalter, Magdalena"},{"first_name":"Michael","full_name":"Prattes, Michael","last_name":"Prattes"},{"last_name":"Merl-Pham","full_name":"Merl-Pham, Juliane","first_name":"Juliane"},{"last_name":"Zisser","full_name":"Zisser, Gertrude","first_name":"Gertrude"},{"first_name":"Irina","full_name":"Grishkovskaya, Irina","last_name":"Grishkovskaya"},{"id":"3661B498-F248-11E8-B48F-1D18A9856A87","full_name":"Hodirnau, Victor-Valentin","last_name":"Hodirnau","first_name":"Victor-Valentin","orcid":"0000-0003-3904-947X"},{"last_name":"Vareka","full_name":"Vareka, Martin","first_name":"Martin"},{"first_name":"Rolf","full_name":"Breinbauer, Rolf","last_name":"Breinbauer"},{"first_name":"Stefanie M.","last_name":"Hauck","full_name":"Hauck, Stefanie M."},{"full_name":"Haselbach, David","last_name":"Haselbach","first_name":"David"},{"full_name":"Bergler, Helmut","last_name":"Bergler","first_name":"Helmut"}],"doi":"10.1038/s41467-024-51754-3","citation":{"ama":"Kofler L, Grundmann L, Gerhalter M, et al. The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation. Nature Communications. 2024;15. doi:10.1038/s41467-024-51754-3","chicago":"Kofler, Lisa, Lorenz Grundmann, Magdalena Gerhalter, Michael Prattes, Juliane Merl-Pham, Gertrude Zisser, Irina Grishkovskaya, et al. “The Novel Ribosome Biogenesis Inhibitor Usnic Acid Blocks Nucleolar Pre-60S Maturation.” Nature Communications. Springer Nature, 2024. https://doi.org/10.1038/s41467-024-51754-3.","ista":"Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau V-V, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. 2024. The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation. Nature Communications. 15, 7511.","apa":"Kofler, L., Grundmann, L., Gerhalter, M., Prattes, M., Merl-Pham, J., Zisser, G., … Bergler, H. (2024). The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-024-51754-3","short":"L. Kofler, L. Grundmann, M. Gerhalter, M. Prattes, J. Merl-Pham, G. Zisser, I. Grishkovskaya, V.-V. Hodirnau, M. Vareka, R. Breinbauer, S.M. Hauck, D. Haselbach, H. Bergler, Nature Communications 15 (2024).","mla":"Kofler, Lisa, et al. “The Novel Ribosome Biogenesis Inhibitor Usnic Acid Blocks Nucleolar Pre-60S Maturation.” Nature Communications, vol. 15, 7511, Springer Nature, 2024, doi:10.1038/s41467-024-51754-3.","ieee":"L. Kofler et al., “The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation,” Nature Communications, vol. 15. Springer Nature, 2024."},"external_id":{"pmid":["39209816"],"isi":["001457895200001"]},"volume":15,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"intvolume":" 15","status":"public","type":"journal_article","file_date_updated":"2024-09-09T08:56:12Z","abstract":[{"text":"The formation of new ribosomes is tightly coordinated with cell growth and proliferation. In eukaryotes, the correct assembly of all ribosomal proteins and RNAs follows an intricate scheme of maturation and rearrangement steps across three cellular compartments: the nucleolus, nucleoplasm, and cytoplasm. We demonstrate that usnic acid, a lichen secondary metabolite, inhibits the maturation of the large ribosomal subunit in yeast. We combine biochemical characterization of pre-ribosomal particles with a quantitative single-particle cryo-EM approach to monitor changes in nucleolar particle populations upon drug treatment. Usnic acid rapidly blocks the transition from nucleolar state B to C of Nsa1-associated pre-ribosomes, depleting key maturation factors such as Dbp10 and hindering pre-rRNA processing. This primary nucleolar block rapidly rebounds on earlier stages of the pathway which highlights the regulatory linkages between different steps. In summary, we provide an in-depth characterization of the effect of usnic acid on ribosome biogenesis, which may have implications for its reported anti-cancer activities.","lang":"eng"}],"oa_version":"Published Version","language":[{"iso":"eng"}],"article_processing_charge":"Yes","article_type":"original","quality_controlled":"1","OA_place":"publisher","pmid":1,"scopus_import":"1","isi":1,"department":[{"_id":"EM-Fac"}],"acknowledgement":"We thank Michael A. McAlear, Micheline Fromont-Racin, Philipp Milkereit, Arlen W. Johnson, Sabine Rospert, Ed Hurt, C. Yam, Günter Daum, Wolfgang Zachariae, Katrin Karbstein, Juan P. G. Ballesta, Mercedes Dosil, Miguel Remacha und Jesus de la Cruz for sharing strains or providing antibodies. We thank the members of the Bergler lab and the Haselbach lab for their helpful discussion. We thank Ellen Zhong for helpful discussions about the quantitative cryoDRGN analysis. This research was supported by the Scientific Service Units of IST Austria through resources provided by the Electron Microscopy Facility. This research was funded in whole, or in part, by the Austrian Science Foundation grants [https://doi.org/10.55776/P32977], [https://doi.org/10.55776/P29451] and [https://doi.org/10.55776/P32536] (to H.B.). Research at the IMP is generously supported by Boehringer Ingelheim and the Austrian Research Promotion Agency (Headquarter grant FFG-852936). For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission.","DOAJ_listed":"1","article_number":"7511","date_published":"2024-08-29T00:00:00Z","has_accepted_license":"1"},{"file":[{"date_updated":"2025-01-13T08:26:08Z","success":1,"file_name":"2024_NeuralNetworks_Zendrikov.pdf","file_id":"18825","date_created":"2025-01-13T08:26:08Z","access_level":"open_access","file_size":6162281,"relation":"main_file","creator":"dernst","checksum":"6a194323234e01d4ae725f674529cdb1","content_type":"application/pdf"}],"publication_status":"published","ddc":["570"],"date_created":"2024-09-08T22:01:10Z","oa":1,"ec_funded":1,"OA_type":"hybrid","_id":"17886","day":"01","publication_identifier":{"eissn":["1879-2782"],"issn":["0893-6080"]},"title":"The vitals for steady nucleation maps of spontaneous spiking coherence in autonomous two-dimensional neuronal networks","publication":"Neural Networks","publisher":"Elsevier","date_updated":"2025-09-08T09:12:20Z","year":"2024","corr_author":"1","author":[{"first_name":"Dmitrii","last_name":"Zendrikov","full_name":"Zendrikov, Dmitrii"},{"first_name":"Alexander","full_name":"Paraskevov, Alexander","id":"d05e3c56-9262-11ed-9231-be692464e5ac","last_name":"Paraskevov"}],"doi":"10.1016/j.neunet.2024.106589","month":"12","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","external_id":{"pmid":["39217864"],"isi":["001316474600001"]},"citation":{"mla":"Zendrikov, Dmitrii, and Alexander Paraskevov. “The Vitals for Steady Nucleation Maps of Spontaneous Spiking Coherence in Autonomous Two-Dimensional Neuronal Networks.” Neural Networks, vol. 180, 106589, Elsevier, 2024, doi:10.1016/j.neunet.2024.106589.","ieee":"D. Zendrikov and A. Paraskevov, “The vitals for steady nucleation maps of spontaneous spiking coherence in autonomous two-dimensional neuronal networks,” Neural Networks, vol. 180. Elsevier, 2024.","apa":"Zendrikov, D., & Paraskevov, A. (2024). The vitals for steady nucleation maps of spontaneous spiking coherence in autonomous two-dimensional neuronal networks. Neural Networks. Elsevier. https://doi.org/10.1016/j.neunet.2024.106589","short":"D. Zendrikov, A. Paraskevov, Neural Networks 180 (2024).","ista":"Zendrikov D, Paraskevov A. 2024. The vitals for steady nucleation maps of spontaneous spiking coherence in autonomous two-dimensional neuronal networks. Neural Networks. 180, 106589.","ama":"Zendrikov D, Paraskevov A. The vitals for steady nucleation maps of spontaneous spiking coherence in autonomous two-dimensional neuronal networks. Neural Networks. 2024;180. doi:10.1016/j.neunet.2024.106589","chicago":"Zendrikov, Dmitrii, and Alexander Paraskevov. “The Vitals for Steady Nucleation Maps of Spontaneous Spiking Coherence in Autonomous Two-Dimensional Neuronal Networks.” Neural Networks. Elsevier, 2024. https://doi.org/10.1016/j.neunet.2024.106589."},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":180,"intvolume":" 180","status":"public","type":"journal_article","language":[{"iso":"eng"}],"oa_version":"Published Version","file_date_updated":"2025-01-13T08:26:08Z","abstract":[{"text":"Thin pancake-like neuronal networks cultured on top of a planar microelectrode array have been extensively tried out in neuroengineering, as a substrate for the mobile robot’s control unit, i.e., as a cyborg’s brain. Most of these attempts failed due to intricate self-organizing dynamics in the neuronal systems. In particular, the networks may exhibit an emergent spatial map of steady nucleation sites (“n-sites”) of spontaneous population spikes. Being unpredictable and independent of the surface electrode locations, the n-sites drastically change local ability of the network to generate spikes. Here, using a spiking neuronal network model with generative spatially-embedded connectome, we systematically show in simulations that the number, location, and relative activity of spontaneously formed n-sites (“the vitals”) crucially depend on the samplings of three distributions: (1) the network distribution of neuronal excitability, (2) the distribution of connections between neurons of the network, and (3) the distribution of maximal amplitudes of a single synaptic current pulse. Moreover, blocking the dynamics of a small fraction (about 4%) of non-pacemaker neurons having the highest excitability was enough to completely suppress the occurrence of population spikes and their n-sites. This key result is explained theoretically. Remarkably, the n-sites occur taking into account only short-term synaptic plasticity, i.e., without a Hebbian-type plasticity. As the spiking network model used in this study is strictly deterministic, all simulation results can be accurately reproduced. The model, which has already demonstrated a very high richness-to-complexity ratio, can also be directly extended into the three-dimensional case, e.g., for targeting peculiarities of spiking dynamics in cerebral (or brain) organoids. We recommend the model as an excellent illustrative tool for teaching network-level computational neuroscience, complementing a few benchmark models.","lang":"eng"}],"quality_controlled":"1","article_type":"original","article_processing_charge":"Yes (via OA deal)","pmid":1,"project":[{"call_identifier":"H2020","_id":"0aacfa84-070f-11eb-9043-d7eb2c709234","grant_number":"819603","name":"Learning the shape of synaptic plasticity rules for neuronal architectures and function through machine learning."}],"OA_place":"publisher","isi":1,"department":[{"_id":"TiVo"}],"scopus_import":"1","has_accepted_license":"1","article_number":"106589","date_published":"2024-12-01T00:00:00Z","acknowledgement":"A.P. is grateful to Chaitanya Chintaluri, Douglas Feitosa Tomé, and Tim P. Vogels for useful discussions. This work was supported by a European Research Council Consolidator Grant (SYNAPSEEK, 819603, to Tim P. Vogels)."},{"intvolume":" 248","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":248,"type":"journal_article","status":"public","abstract":[{"text":"We show convergence of the Navier-Stokes/Allen-Cahn system to a classical sharp interface model for the two-phase flow of two viscous incompressible fluids with same viscosities in a smooth bounded domain in two and three space dimensions as long as a smooth solution of the limit system exists. Moreover, we obtain error estimates with the aid of a relative entropy method. Our results hold provided that the mobility mε>0 in the Allen-Cahn equation tends to zero in a subcritical way, i.e., mε=m0εβ for some β∈(0,2) and m0>0 . The proof proceeds by showing via a relative entropy argument that the solution to the Navier-Stokes/Allen-Cahn system remains close to the solution of a perturbed version of the two-phase flow problem, augmented by an extra mean curvature flow term mεHΓt in the interface motion. In a second step, it is easy to see that the solution to the perturbed problem is close to the original two-phase flow.","lang":"eng"}],"file_date_updated":"2024-09-09T08:43:32Z","oa_version":"Published Version","language":[{"iso":"eng"}],"article_processing_charge":"Yes (via OA deal)","article_type":"original","quality_controlled":"1","project":[{"grant_number":"948819","name":"Bridging Scales in Random Materials","call_identifier":"H2020","_id":"0aa76401-070f-11eb-9043-b5bb049fa26d"}],"pmid":1,"scopus_import":"1","department":[{"_id":"JuFi"}],"isi":1,"acknowledgement":"J. Fischer and M. Moser have received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 948819).\r\nOpen Access funding enabled and organized by Projekt DEAL.","date_published":"2024-09-03T00:00:00Z","article_number":"77","arxiv":1,"has_accepted_license":"1","publication_status":"published","file":[{"checksum":"98493a05b84e4513b6394dfad4851ddf","content_type":"application/pdf","creator":"dernst","date_created":"2024-09-09T08:43:32Z","access_level":"open_access","relation":"main_file","file_size":811131,"date_updated":"2024-09-09T08:43:32Z","file_id":"17938","file_name":"2024_ArchiveRatAnalysis_Abels.pdf","success":1}],"issue":"5","oa":1,"date_created":"2024-09-08T22:01:10Z","ddc":["510"],"day":"03","_id":"17887","ec_funded":1,"title":"Approximation of classical two-phase flows of viscous incompressible fluids by a Navier–Stokes/Allen–Cahn system","publication_identifier":{"eissn":["1432-0673"],"issn":["0003-9527"]},"year":"2024","publisher":"Springer Nature","date_updated":"2025-09-08T09:11:41Z","publication":"Archive for Rational Mechanics and Analysis","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"09","author":[{"first_name":"Helmut","full_name":"Abels, Helmut","last_name":"Abels"},{"first_name":"Julian L","orcid":"0000-0002-0479-558X","full_name":"Fischer, Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","last_name":"Fischer"},{"id":"a60047a9-da77-11eb-85b4-c4dc385ebb8c","full_name":"Moser, Maximilian","last_name":"Moser","first_name":"Maximilian"}],"doi":"10.1007/s00205-024-02020-9","citation":{"chicago":"Abels, Helmut, Julian L Fischer, and Maximilian Moser. “Approximation of Classical Two-Phase Flows of Viscous Incompressible Fluids by a Navier–Stokes/Allen–Cahn System.” Archive for Rational Mechanics and Analysis. Springer Nature, 2024. https://doi.org/10.1007/s00205-024-02020-9.","ama":"Abels H, Fischer JL, Moser M. Approximation of classical two-phase flows of viscous incompressible fluids by a Navier–Stokes/Allen–Cahn system. Archive for Rational Mechanics and Analysis. 2024;248(5). doi:10.1007/s00205-024-02020-9","ista":"Abels H, Fischer JL, Moser M. 2024. Approximation of classical two-phase flows of viscous incompressible fluids by a Navier–Stokes/Allen–Cahn system. Archive for Rational Mechanics and Analysis. 248(5), 77.","short":"H. Abels, J.L. Fischer, M. Moser, Archive for Rational Mechanics and Analysis 248 (2024).","apa":"Abels, H., Fischer, J. L., & Moser, M. (2024). Approximation of classical two-phase flows of viscous incompressible fluids by a Navier–Stokes/Allen–Cahn system. Archive for Rational Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-024-02020-9","ieee":"H. Abels, J. L. Fischer, and M. Moser, “Approximation of classical two-phase flows of viscous incompressible fluids by a Navier–Stokes/Allen–Cahn system,” Archive for Rational Mechanics and Analysis, vol. 248, no. 5. Springer Nature, 2024.","mla":"Abels, Helmut, et al. “Approximation of Classical Two-Phase Flows of Viscous Incompressible Fluids by a Navier–Stokes/Allen–Cahn System.” Archive for Rational Mechanics and Analysis, vol. 248, no. 5, 77, Springer Nature, 2024, doi:10.1007/s00205-024-02020-9."},"external_id":{"pmid":["39239088"],"arxiv":["2311.02997"],"isi":["001305530600001"]}},{"publication_status":"published","file":[{"success":1,"file_id":"18054","file_name":"2024_LandscapeEcology_Pocull.pdf","date_updated":"2024-09-11T07:14:03Z","relation":"main_file","file_size":1494987,"date_created":"2024-09-11T07:14:03Z","access_level":"open_access","checksum":"2e1cbc320ec1b4447a5a8562a90bcbc3","content_type":"application/pdf","creator":"dernst"}],"issue":"9","oa":1,"date_created":"2024-09-08T22:01:11Z","ddc":["570"],"day":"01","_id":"17888","ec_funded":1,"title":"Multiscale spatial analysis of two plant–insect interactions: Effects of landscape, resource distribution, and other insects","publication_identifier":{"eissn":["1572-9761"],"issn":["0921-2973"]},"year":"2024","corr_author":"1","publisher":"Springer Nature","date_updated":"2025-09-08T09:20:11Z","publication":"Landscape Ecology","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"09","doi":"10.1007/s10980-024-01899-9","author":[{"first_name":"Guillem","id":"54359172-700c-11ef-a103-c1d91ceac6d6","full_name":"Pocull Belles, Guillem","last_name":"Pocull Belles"},{"orcid":"0000-0002-7354-8574","first_name":"Carina","full_name":"Baskett, Carina","id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","last_name":"Baskett"},{"last_name":"Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","first_name":"Nicholas H"}],"citation":{"ista":"Pocull Belles G, Baskett C, Barton NH. 2024. Multiscale spatial analysis of two plant–insect interactions: Effects of landscape, resource distribution, and other insects. Landscape Ecology. 39(9), 172.","ama":"Pocull Belles G, Baskett C, Barton NH. Multiscale spatial analysis of two plant–insect interactions: Effects of landscape, resource distribution, and other insects. Landscape Ecology. 2024;39(9). doi:10.1007/s10980-024-01899-9","chicago":"Pocull Belles, Guillem, Carina Baskett, and Nicholas H Barton. “Multiscale Spatial Analysis of Two Plant–Insect Interactions: Effects of Landscape, Resource Distribution, and Other Insects.” Landscape Ecology. Springer Nature, 2024. https://doi.org/10.1007/s10980-024-01899-9.","mla":"Pocull Belles, Guillem, et al. “Multiscale Spatial Analysis of Two Plant–Insect Interactions: Effects of Landscape, Resource Distribution, and Other Insects.” Landscape Ecology, vol. 39, no. 9, 172, Springer Nature, 2024, doi:10.1007/s10980-024-01899-9.","ieee":"G. Pocull Belles, C. Baskett, and N. H. Barton, “Multiscale spatial analysis of two plant–insect interactions: Effects of landscape, resource distribution, and other insects,” Landscape Ecology, vol. 39, no. 9. Springer Nature, 2024.","apa":"Pocull Belles, G., Baskett, C., & Barton, N. H. (2024). Multiscale spatial analysis of two plant–insect interactions: Effects of landscape, resource distribution, and other insects. Landscape Ecology. Springer Nature. https://doi.org/10.1007/s10980-024-01899-9","short":"G. Pocull Belles, C. Baskett, N.H. Barton, Landscape Ecology 39 (2024)."},"external_id":{"isi":["001304011900001"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":39,"intvolume":" 39","type":"journal_article","status":"public","file_date_updated":"2024-09-11T07:14:03Z","abstract":[{"lang":"eng","text":"Context: Biotic resource exploitation is a critical determinant of species’ distributions. However, quantifying resource exploitation patterns through space and time can be difficult, complicating their incorporation in spatial ecology studies. Therefore, understanding the local drivers of spatial patterns of resource exploitation may contribute to better large-scale species distribution models.\r\nObjectives: We investigated (1) how the resource exploitation patterns of two trophic interactions (plant–insect) are explained by insect behaviour, resource aggregation, and potential insect-insect interactions. We also analyzed how (2) resource patch size and (3) resource accessibility in a heterogeneous landscape affected host exploitation patterns.\r\nMethods: We quantified nectar robbing by insects in the genus Bombus (bumblebees) and seed predation by Brachypterolus vestitus larvae (Antirrhinum beetle) on Antirrhinum majus L. (wild snapdragons) in the Pyrenees Mountains, Catalonia, Spain. We tested hypotheses about resource exploitation by integrating spatial analyses at multiple scales.\r\nResults: Both trophic interactions were aggregated, explained by the aggregation of their resource. At some scales, nectar robbing is more aggregated than the resource. Trophic interaction abundance is proportional to resource patch size, following the ideal free distribution model. Landscape features do not explain the locations exploited. Nectar robbing and seed predation occur together more often than expected.\r\nConclusions: Our findings suggest that multiple biotic and ecological spatial factors may simultaneously affect resource exploitation at a local scale. These findings should be considered when developing agricultural projects, management plans and conservation policies."}],"oa_version":"Published Version","language":[{"iso":"eng"}],"article_processing_charge":"Yes (via OA deal)","article_type":"original","quality_controlled":"1","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"},{"_id":"05959E1C-7A3F-11EA-A408-12923DDC885E","name":"Snapdragon Speciation","grant_number":"P32166"}],"scopus_import":"1","department":[{"_id":"NiBa"}],"isi":1,"acknowledgement":"For the beetle barcoding, we are very thankful to Brent Emerson’s laboratory at the Consejo Superior de Investigaciones Científicas (CSIC) at the Instituto de Productos Naturales y Agrobiología (IPNA) in La Laguna, Tenerife. Many thanks to numerous field assistants, especially Sandra Cuevas Gallego, Beatriz Pablo Carmona, Luís Santos Cid and Alex Fuster, for their assistance in data collection. Finally, we thank Jesús Muñoz, Virgilio Gómez-Rubio, and two anonymous reviewers for comments that greatly improved the quality of the manuscript.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria). CB received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. NB was funded by the FWF grant “Löwenmaul speciation” P 32166-B32.","date_published":"2024-09-01T00:00:00Z","article_number":"172","has_accepted_license":"1"},{"scopus_import":"1","isi":1,"department":[{"_id":"JoMa"}],"article_number":"A44","date_published":"2024-09-01T00:00:00Z","arxiv":1,"acknowledgement":"The authors acknowledge the financial support from the MICIU with funding from the European Union NextGenerationEU and Generalitat Valenciana in the call Programa de Planes Complementarios de I+D+i (PRTR 2022) Project (VAL-JPAS), reference ASFAE/2022/025. This work has been funded by project PID2019-109592GBI00/AEI/10.13039/501100011033 from the Spanish Ministerio de Ciencia e Innovación (MCIN)-Agencia Estatal de Investigación, by the Project of Excellence Prometeo/2020/085 from the Conselleria d’Innovació Universitats, Ciència i Societat Digital de la Generalitat Valenciana. It has also be funded by the Project of Excellence Prometeo/2020/085 from the Conselleria d’Educació, Universitats, i Ocupació de la Generalitat Valenciana. Funded by the European Union (ERC, AGENTS, 101076224). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. ST acknowledges support by the Royal Society Research Grant G125142. AH acknowledges support by the VILLUM FONDEN under grant 37459. The Cosmic Dawn Center (DAWN) is funded by the Danish National Research Foundation under grant DNRF140. We acknowledge funding from JWST program GO-1933. Support for this work was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555. This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF) through project grant 200020_207349. This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with program # 1933. The specific observations analyzed can be accessed via https://doi.org/10.17909/s9ht-7n34.","has_accepted_license":"1","abstract":[{"text":"The increasingly neutral intergalactic gas at z > 6 impacts the Lyman-α (Lyα) flux observed from galaxies. One luminous galaxy, COLA1, stands out because of its unique double-peaked Lyα line at z = 6.6, unseen in any simulation of reionization. Here, we present JWST/NIRCam wide-field slitless spectroscopy in a 21 arcmin2 field centered on COLA1. We find 141 galaxies spectroscopically selected through the [O III] doublet at 5.35 < z < 6.95, with 40 of these sources showing Hβ. For COLA1, we additionally detect [O III]4363 as well as Hγ. We measure a systemic redshift of z = 6.5917 for COLA1, confirming the classical double-peak nature of the Lyα profile. This implies that it resides in a highly ionized bubble and that it is leaking ionizing photons with a high escape fraction of fesc(LyC) = 20–50%, making it a prime laboratory to study Lyman continuum escape in the Epoch of Reionization. COLA1 shows all the signs of a prolific ionizer with a Lyα escape fraction of 81 ± 5%, Balmer decrement indicating no dust, a steep UV slope (βUV = −3.2 ± 0.4), and a star-formation surface density ≳10× that of typical galaxies at similar redshift. We detect five galaxies in COLA1’s close environment (Δz < 0.02). Exploiting the high spectroscopic completeness inherent to grism surveys, and using mock simulations that fully mimic the selection function, we show that the number of detected companions is very typical for a normal similarly UV-bright (MUV ∼ −21.3) galaxy – that is, the ionized bubble around COLA1 is unlikely to be due to an excessively large over-density. Instead, the measured ionizing properties suggest that COLA1 by itself might be powering the bubble required to explain its double-peaked Lyα profile (Rion ≈ 0.7 pMpc), with only minor contributions from detected neighbors (−19.5 ≲ MUV ≲ −17.5).","lang":"eng"}],"file_date_updated":"2024-09-11T07:35:00Z","language":[{"iso":"eng"}],"oa_version":"Published Version","article_processing_charge":"Yes (in subscription journal)","quality_controlled":"1","article_type":"original","intvolume":" 689","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":689,"status":"public","type":"journal_article","doi":"10.1051/0004-6361/202450318","author":[{"full_name":"Torralba-Torregrosa, Alberto","last_name":"Torralba-Torregrosa","first_name":"Alberto"},{"orcid":"0000-0003-2871-127X","first_name":"Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","full_name":"Matthee, Jorryt J","last_name":"Matthee"},{"full_name":"Naidu, Rohan P.","last_name":"Naidu","first_name":"Rohan P."},{"first_name":"Ruari","full_name":"Mackenzie, Ruari","last_name":"Mackenzie"},{"first_name":"Gabriele","full_name":"Pezzulli, Gabriele","last_name":"Pezzulli"},{"first_name":"Anne","full_name":"Hutter, Anne","last_name":"Hutter"},{"first_name":"Pablo","full_name":"Arnalte-Mur, Pablo","last_name":"Arnalte-Mur"},{"last_name":"Gurung-López","full_name":"Gurung-López, Siddhartha","first_name":"Siddhartha"},{"last_name":"Tacchella","full_name":"Tacchella, Sandro","first_name":"Sandro"},{"last_name":"Oesch","full_name":"Oesch, Pascal","first_name":"Pascal"},{"first_name":"Daichi","full_name":"Kashino, Daichi","last_name":"Kashino"},{"first_name":"Charlie","full_name":"Conroy, Charlie","last_name":"Conroy"},{"full_name":"Sobral, David","last_name":"Sobral","first_name":"David"}],"month":"09","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","external_id":{"isi":["001303205700016"],"arxiv":["2404.10040"]},"citation":{"apa":"Torralba-Torregrosa, A., Matthee, J. J., Naidu, R. P., Mackenzie, R., Pezzulli, G., Hutter, A., … Sobral, D. (2024). Anatomy of an ionized bubble: NIRCam grism spectroscopy of the z = 6.6 double-peaked Lyman- α emitter COLA1 and its environment. Astronomy and Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202450318","short":"A. Torralba-Torregrosa, J.J. Matthee, R.P. Naidu, R. Mackenzie, G. Pezzulli, A. Hutter, P. Arnalte-Mur, S. Gurung-López, S. Tacchella, P. Oesch, D. Kashino, C. Conroy, D. Sobral, Astronomy and Astrophysics 689 (2024).","mla":"Torralba-Torregrosa, Alberto, et al. “Anatomy of an Ionized Bubble: NIRCam Grism Spectroscopy of the z = 6.6 Double-Peaked Lyman- α Emitter COLA1 and Its Environment.” Astronomy and Astrophysics, vol. 689, A44, EDP Sciences, 2024, doi:10.1051/0004-6361/202450318.","ieee":"A. Torralba-Torregrosa et al., “Anatomy of an ionized bubble: NIRCam grism spectroscopy of the z = 6.6 double-peaked Lyman- α emitter COLA1 and its environment,” Astronomy and Astrophysics, vol. 689. EDP Sciences, 2024.","ama":"Torralba-Torregrosa A, Matthee JJ, Naidu RP, et al. Anatomy of an ionized bubble: NIRCam grism spectroscopy of the z = 6.6 double-peaked Lyman- α emitter COLA1 and its environment. Astronomy and Astrophysics. 2024;689. doi:10.1051/0004-6361/202450318","chicago":"Torralba-Torregrosa, Alberto, Jorryt J Matthee, Rohan P. Naidu, Ruari Mackenzie, Gabriele Pezzulli, Anne Hutter, Pablo Arnalte-Mur, et al. “Anatomy of an Ionized Bubble: NIRCam Grism Spectroscopy of the z = 6.6 Double-Peaked Lyman- α Emitter COLA1 and Its Environment.” Astronomy and Astrophysics. EDP Sciences, 2024. https://doi.org/10.1051/0004-6361/202450318.","ista":"Torralba-Torregrosa A, Matthee JJ, Naidu RP, Mackenzie R, Pezzulli G, Hutter A, Arnalte-Mur P, Gurung-López S, Tacchella S, Oesch P, Kashino D, Conroy C, Sobral D. 2024. Anatomy of an ionized bubble: NIRCam grism spectroscopy of the z = 6.6 double-peaked Lyman- α emitter COLA1 and its environment. Astronomy and Astrophysics. 689, A44."},"publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"title":"Anatomy of an ionized bubble: NIRCam grism spectroscopy of the z = 6.6 double-peaked Lyman- α emitter COLA1 and its environment","date_updated":"2025-09-08T09:20:52Z","publisher":"EDP Sciences","year":"2024","publication":"Astronomy and Astrophysics","oa":1,"ddc":["520"],"date_created":"2024-09-08T22:01:11Z","_id":"17889","day":"01","publication_status":"published","file":[{"date_updated":"2024-09-11T07:35:00Z","file_name":"2024_AstronomyAstrophysics_TorralbaTorregrosa.pdf","file_id":"18055","success":1,"checksum":"a6c0df287c75e8929db9f42badeac859","creator":"dernst","content_type":"application/pdf","date_created":"2024-09-11T07:35:00Z","access_level":"open_access","file_size":6225413,"relation":"main_file"}]},{"article_processing_charge":"Yes","article_type":"original","quality_controlled":"1","file_date_updated":"2024-09-09T09:01:12Z","abstract":[{"text":"Abstract\r\nMethods used in topological data analysis naturally capture higher-order interactions in point cloud data embedded in a metric space. This methodology was recently extended to data living in an information space, by which we mean a space measured with an information theoretical distance. One such setting is a finite collection of discrete probability distributions embedded in the probability simplex measured with the relative entropy (Kullback–Leibler divergence). More generally, one can work with a Bregman divergence parameterized by a different notion of entropy. While theoretical algorithms exist for this setup, there is a paucity of implementations for exploring and comparing geometric-topological properties of various information spaces. The interest of this work is therefore twofold. First, we propose the first robust algorithms and software for geometric and topological data analysis in information space. Perhaps surprisingly, despite working with Bregman divergences, our design reuses robust libraries for the Euclidean case. Second, using the new software, we take the first steps towards understanding the geometric-topological structure of these spaces. In particular, we compare them with the more familiar spaces equipped with the Euclidean and Fisher metrics.","lang":"eng"}],"oa_version":"Published Version","language":[{"iso":"eng"}],"status":"public","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"intvolume":" 26","related_material":{"link":[{"url":"https://git.ista.ac.at/katharina.oelsboeck/wrap_2_3-public/","relation":"software"}]},"volume":26,"acknowledgement":"We thank Anton Nikitenko for first observing that the Wrap complex can be characterized as stated in Claim (ii) of the Wrap Complex Lemma, and Ondrej Draganov for correcting a critical mistake in one of our formulas in Section 2.","date_published":"2024-08-01T00:00:00Z","article_number":"637","has_accepted_license":"1","scopus_import":"1","department":[{"_id":"HeEd"}],"isi":1,"pmid":1,"day":"01","_id":"17891","oa":1,"date_created":"2024-09-08T22:01:11Z","ddc":["510"],"publication_status":"published","file":[{"file_name":"2024_Entropy_Edelsbrunner.pdf","file_id":"17948","success":1,"date_updated":"2024-09-09T09:01:12Z","content_type":"application/pdf","checksum":"624a9e2c5b49d6c38b88b0f675467ba3","creator":"dernst","relation":"main_file","file_size":8025139,"date_created":"2024-09-09T09:01:12Z","access_level":"open_access"}],"issue":"8","external_id":{"isi":["001305543500001"],"pmid":["39202107"]},"citation":{"mla":"Edelsbrunner, Herbert, et al. “Understanding Higher-Order Interactions in Information Space.” Entropy, vol. 26, no. 8, 637, MDPI, 2024, doi:10.3390/e26080637.","ieee":"H. Edelsbrunner, K. Ölsböck, and H. Wagner, “Understanding higher-order interactions in information space,” Entropy, vol. 26, no. 8. MDPI, 2024.","short":"H. Edelsbrunner, K. Ölsböck, H. Wagner, Entropy 26 (2024).","apa":"Edelsbrunner, H., Ölsböck, K., & Wagner, H. (2024). Understanding higher-order interactions in information space. Entropy. MDPI. https://doi.org/10.3390/e26080637","ista":"Edelsbrunner H, Ölsböck K, Wagner H. 2024. Understanding higher-order interactions in information space. Entropy. 26(8), 637.","ama":"Edelsbrunner H, Ölsböck K, Wagner H. Understanding higher-order interactions in information space. Entropy. 2024;26(8). doi:10.3390/e26080637","chicago":"Edelsbrunner, Herbert, Katharina Ölsböck, and Hubert Wagner. “Understanding Higher-Order Interactions in Information Space.” Entropy. MDPI, 2024. https://doi.org/10.3390/e26080637."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"08","doi":"10.3390/e26080637","author":[{"full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner","first_name":"Herbert","orcid":"0000-0002-9823-6833"},{"first_name":"Katharina","orcid":"0000-0002-4672-8297","last_name":"Ölsböck","id":"4D4AA390-F248-11E8-B48F-1D18A9856A87","full_name":"Ölsböck, Katharina"},{"first_name":"Hubert","id":"379CA8B8-F248-11E8-B48F-1D18A9856A87","full_name":"Wagner, Hubert","last_name":"Wagner"}],"year":"2024","date_updated":"2025-09-08T09:13:44Z","publisher":"MDPI","publication":"Entropy","title":"Understanding higher-order interactions in information space","publication_identifier":{"eissn":["1099-4300"]}}]