[{"ec_funded":1,"status":"public","quality_controlled":"1","publication_identifier":{"isbn":["9783031765537"],"issn":["0302-9743"],"eissn":["1611-3349"]},"doi":"10.1007/978-3-031-76554-4_9","page":"151-171","oa_version":"None","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","article_processing_charge":"No","type":"conference","publisher":"Springer Nature","department":[{"_id":"ToHe"}],"citation":{"ieee":"M. Chalupa, T. A. Henzinger, and A. Oliveira da Costa, “Monitoring extended hypernode logic,” in <i>Integrated Formal Methods</i>, 2024, vol. 15234, pp. 151–171.","apa":"Chalupa, M., Henzinger, T. A., &#38; Oliveira da Costa, A. (2024). Monitoring extended hypernode logic. In <i>Integrated Formal Methods</i> (Vol. 15234, pp. 151–171). Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-76554-4_9\">https://doi.org/10.1007/978-3-031-76554-4_9</a>","mla":"Chalupa, Marek, et al. “Monitoring Extended Hypernode Logic.” <i>Integrated Formal Methods</i>, vol. 15234, Springer Nature, 2024, pp. 151–71, doi:<a href=\"https://doi.org/10.1007/978-3-031-76554-4_9\">10.1007/978-3-031-76554-4_9</a>.","ama":"Chalupa M, Henzinger TA, Oliveira da Costa A. Monitoring extended hypernode logic. In: <i>Integrated Formal Methods</i>. Vol 15234. Springer Nature; 2024:151-171. doi:<a href=\"https://doi.org/10.1007/978-3-031-76554-4_9\">10.1007/978-3-031-76554-4_9</a>","chicago":"Chalupa, Marek, Thomas A Henzinger, and Ana Oliveira da Costa. “Monitoring Extended Hypernode Logic.” In <i>Integrated Formal Methods</i>, 15234:151–71. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-3-031-76554-4_9\">https://doi.org/10.1007/978-3-031-76554-4_9</a>.","ista":"Chalupa M, Henzinger TA, Oliveira da Costa A. 2024. Monitoring extended hypernode logic. Integrated Formal Methods. , LNCS, vol. 15234, 151–171.","short":"M. Chalupa, T.A. Henzinger, A. Oliveira da Costa, in:, Integrated Formal Methods, Springer Nature, 2024, pp. 151–171."},"publication":"Integrated Formal Methods","_id":"18599","title":"Monitoring extended hypernode logic","OA_type":"closed access","date_updated":"2025-09-08T14:47:22Z","alternative_title":["LNCS"],"day":"13","project":[{"call_identifier":"H2020","grant_number":"101020093","name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"},{"grant_number":"F8502","name":"Interface Theory for Security and Privacy","_id":"34a1b658-11ca-11ed-8bc3-c75229f0241e"}],"author":[{"last_name":"Chalupa","first_name":"Marek","id":"87e34708-d6c6-11ec-9f5b-9391e7be2463","full_name":"Chalupa, Marek"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724","full_name":"Henzinger, Thomas A","last_name":"Henzinger","first_name":"Thomas A"},{"id":"f347ec37-6676-11ee-b395-a888cb7b4fb4","full_name":"Oliveira da Costa, Ana","orcid":"0000-0002-8741-5799","last_name":"Oliveira da Costa","first_name":"Ana"}],"publication_status":"published","corr_author":"1","external_id":{"isi":["001416640500009"]},"intvolume":"     15234","isi":1,"language":[{"iso":"eng"}],"acknowledgement":"This work was supported in part by the ERC-2020-AdG 101020093, and by the Austrian Science Fund (FWF) SFB project SpyCoDe F8502.","date_created":"2024-12-01T23:01:52Z","year":"2024","date_published":"2024-11-13T00:00:00Z","volume":15234,"month":"11","abstract":[{"lang":"eng","text":"Hypernode logic can reason about the prefix relation on stutter-reduced finite traces through the stutter-reduced prefix predicate. We increase the expressiveness of hypernode logic in two ways. First, we split the stutter-reduced prefix predicate into an explicit stutter-reduction operator and the classical prefix predicate on words. This change gives hypernode logic the ability to combine synchronous and asynchronous reasoning by explicitly stating which parts of traces can stutter. Second, we allow the use of regular expressions in formulas to reason about the structure of traces. This change enables hypernode logic to describe a mixture of trace properties and hyperproperties.\r\n\r\nWe show how to translate extended hypernode logic formulas into multi-track automata, which are automata that read multiple input words. Then we describe a fully online monitoring algorithm for monitoring k-safety hyperproperties specified in the logic. We have implemented the monitoring algorithm, and evaluated it on monitoring synchronous and asynchronous versions of observational determinism, and on checking the privacy preservation by compiler optimizations."}]},{"article_processing_charge":"No","arxiv":1,"type":"conference","oa_version":"Preprint","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","page":"90-146","status":"public","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031676949"],"issn":["0302-9743"]},"doi":"10.1007/978-3-031-67695-6_4","quality_controlled":"1","day":"01","alternative_title":["LNCS"],"OA_type":"green","date_updated":"2025-09-08T14:45:11Z","_id":"18600","title":"Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report","OA_place":"repository","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2405.13583","open_access":"1"}],"department":[{"_id":"KrCh"}],"publisher":"Springer Nature","publication":"TOOLympics Challenge 2023","citation":{"ista":"Andriushchenko R, Bork A, Budde CE, Češka M, Grover K, Hahn EM, Hartmanns A, Israelsen B, Jansen N, Jeppson J, Junges S, Köhl MA, Könighofer B, Kretinsky J, Meggendorfer T, Parker D, Pranger S, Quatmann T, Ruijters E, Taylor L, Volk M, Weininger M, Zhang Z. 2024. Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. TOOLympics Challenge 2023. , LNCS, vol. 14550, 90–146.","chicago":"Andriushchenko, Roman, Alexander Bork, Carlos E. Budde, Milan Češka, Kush Grover, Ernst Moritz Hahn, Arnd Hartmanns, et al. “Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report.” In <i>TOOLympics Challenge 2023</i>, 14550:90–146. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-3-031-67695-6_4\">https://doi.org/10.1007/978-3-031-67695-6_4</a>.","short":"R. Andriushchenko, A. Bork, C.E. Budde, M. Češka, K. Grover, E.M. Hahn, A. Hartmanns, B. Israelsen, N. Jansen, J. Jeppson, S. Junges, M.A. Köhl, B. Könighofer, J. Kretinsky, T. Meggendorfer, D. Parker, S. Pranger, T. Quatmann, E. Ruijters, L. Taylor, M. Volk, M. Weininger, Z. Zhang, in:, TOOLympics Challenge 2023, Springer Nature, 2024, pp. 90–146.","apa":"Andriushchenko, R., Bork, A., Budde, C. E., Češka, M., Grover, K., Hahn, E. M., … Zhang, Z. (2024). Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. In <i>TOOLympics Challenge 2023</i> (Vol. 14550, pp. 90–146). Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-67695-6_4\">https://doi.org/10.1007/978-3-031-67695-6_4</a>","mla":"Andriushchenko, Roman, et al. “Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report.” <i>TOOLympics Challenge 2023</i>, vol. 14550, Springer Nature, 2024, pp. 90–146, doi:<a href=\"https://doi.org/10.1007/978-3-031-67695-6_4\">10.1007/978-3-031-67695-6_4</a>.","ieee":"R. Andriushchenko <i>et al.</i>, “Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report,” in <i>TOOLympics Challenge 2023</i>, 2024, vol. 14550, pp. 90–146.","ama":"Andriushchenko R, Bork A, Budde CE, et al. Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. In: <i>TOOLympics Challenge 2023</i>. Vol 14550. Springer Nature; 2024:90-146. doi:<a href=\"https://doi.org/10.1007/978-3-031-67695-6_4\">10.1007/978-3-031-67695-6_4</a>"},"publication_status":"published","external_id":{"isi":["001434957500004"],"arxiv":["2405.13583"]},"author":[{"full_name":"Andriushchenko, Roman","first_name":"Roman","last_name":"Andriushchenko"},{"full_name":"Bork, Alexander","last_name":"Bork","first_name":"Alexander"},{"last_name":"Budde","first_name":"Carlos E.","full_name":"Budde, Carlos E."},{"full_name":"Češka, Milan","last_name":"Češka","first_name":"Milan"},{"last_name":"Grover","first_name":"Kush","full_name":"Grover, Kush"},{"last_name":"Hahn","first_name":"Ernst Moritz","full_name":"Hahn, Ernst Moritz"},{"full_name":"Hartmanns, Arnd","last_name":"Hartmanns","first_name":"Arnd"},{"full_name":"Israelsen, Bryant","last_name":"Israelsen","first_name":"Bryant"},{"full_name":"Jansen, Nils","last_name":"Jansen","first_name":"Nils"},{"full_name":"Jeppson, Joshua","first_name":"Joshua","last_name":"Jeppson"},{"full_name":"Junges, Sebastian","last_name":"Junges","first_name":"Sebastian"},{"last_name":"Köhl","first_name":"Maximilian A.","full_name":"Köhl, Maximilian A."},{"full_name":"Könighofer, Bettina","last_name":"Könighofer","first_name":"Bettina"},{"first_name":"Jan","last_name":"Kretinsky","full_name":"Kretinsky, Jan","orcid":"0000-0002-8122-2881","id":"44CEF464-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Meggendorfer","first_name":"Tobias","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","orcid":"0000-0002-1712-2165","full_name":"Meggendorfer, Tobias"},{"full_name":"Parker, David","first_name":"David","last_name":"Parker"},{"full_name":"Pranger, Stefan","last_name":"Pranger","first_name":"Stefan"},{"last_name":"Quatmann","first_name":"Tim","full_name":"Quatmann, Tim"},{"last_name":"Ruijters","first_name":"Enno","full_name":"Ruijters, Enno"},{"first_name":"Landon","last_name":"Taylor","full_name":"Taylor, Landon"},{"full_name":"Volk, Matthias","first_name":"Matthias","last_name":"Volk"},{"last_name":"Weininger","first_name":"Maximilian","id":"02ab0197-cc70-11ed-ab61-918e71f56881","full_name":"Weininger, Maximilian"},{"full_name":"Zhang, Zhen","first_name":"Zhen","last_name":"Zhang"}],"month":"11","abstract":[{"lang":"eng","text":"The analysis of formal models that include quantitative aspects such as timing or probabilistic choices is performed by quantitative verification tools. Broad and mature tool support is available for computing basic properties such as expected rewards on basic models such as Markov chains. Previous editions of QComp, the comparison of tools for the analysis of quantitative formal models, focused on this setting. Many application scenarios, however, require more advanced property types such as LTL and parameter synthesis queries as well as advanced models like stochastic games and partially observable MDPs. For these, tool support is in its infancy today. This paper presents the outcomes of QComp 2023: a survey of the state of the art in quantitative verification tool support for advanced property types and models. With tools ranging from first research prototypes to well-supported integrations into established toolsets, this report highlights today’s active areas and tomorrow’s challenges in tool-focused research for quantitative verification."}],"volume":14550,"date_created":"2024-12-01T23:01:53Z","date_published":"2024-11-01T00:00:00Z","year":"2024","intvolume":"     14550","language":[{"iso":"eng"}],"oa":1,"acknowledgement":"The authors are ordered alphabetically. This work was supported by DFG RTG 2236/2 (UnRAVeL) and DFG project TRR 248 (CPEC, ID 389792660), by the EU under MSCA grant agreements 101008233 (MISSION), 101034413 (IST-BRIDGE), and 101067199 (ProSVED), by ERC Starting Grant 101077178 (DEUCE), ERC Consolidator Grant 864075 (CAESAR), and ERC Advanced Grant 834115 (FUN2MODEL), by GAČR grant GA23-06963S (VESCAA), by National Science Foundation grant 1856733, by NextGenerationEU project D53D23008400006 (SMARTITUDE), and by NWO VENI grant 639.021.754.","isi":1},{"isi":1,"oa":1,"acknowledgement":"The authors thank Simone Frasca, Vincent Jouanny, Guillaume Beaulieu, Camille Roy, Dominic Dahinden, Davide Lombardo, Daniel Chrastina, and Siddhart Gautam for contributing to some cleanroom fabrication steps, the measurement setup, device simulations, data analysis, and for the useful discussions. P.S. acknowledges support from the Swiss National Science Foundation (SNSF) through the grants Ref. No. 200021 200418 and Ref. No. 206021_205335, and from the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number 01042765 SEFRI MB22.00081. W.J. acknowledges support from the EPFL QSE Postdoctoral Fellowship Grant. S.B., D.L., and P.S. acknowledge support from the NCCR Spin Qubit in Silicon (NCCR-SPIN) Grant No. 51NF40-180604. M.J., G.K., G.I., and S.C. acknowledge support from the Horizon Europe Project IGNITE ID 101070193. G.K. acknowledges support from the FWF via the P32235 and I05060 projects.","language":[{"iso":"eng"}],"intvolume":"        15","date_published":"2024-12-01T00:00:00Z","file_date_updated":"2024-12-03T11:00:15Z","article_type":"original","year":"2024","date_created":"2024-12-01T23:01:53Z","volume":15,"abstract":[{"text":"Semiconductor quantum dots (QDs) in planar germanium (Ge) heterostructures have emerged as front-runners for future hole-based quantum processors. Here, we present strong coupling between a hole charge qubit, defined in a double quantum dot (DQD) in planar Ge, and microwave photons in a high-impedance (Zr = 1.3 kΩ) resonator based on an array of superconducting quantum interference devices (SQUIDs). Our investigation reveals vacuum-Rabi splittings with coupling strengths up to g0/2π = 260 MHz, and a cooperativity of C ~ 100, dependent on DQD tuning. Furthermore, utilizing the frequency tunability of our resonator, we explore the quenched energy splitting associated with strong Coulomb correlation effects in Ge QDs. The observed enhanced coherence of the strongly correlated excited state signals the presence of distinct symmetries within related spin functions, serving as a precursor to the strong coupling between photons and spin-charge hybrid qubits in planar Ge. This work paves the way towards coherent quantum connections between remote hole qubits in planar Ge, required to scale up hole-based quantum processors.","lang":"eng"}],"month":"12","DOAJ_listed":"1","project":[{"_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E","grant_number":"P32235","call_identifier":"FWF","name":"Towards scalable hut wire quantum devices"},{"grant_number":"I05060","name":"High impedance circuit quantum electrodynamics with hole spins","_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1"}],"author":[{"full_name":"De Palma, Franco","first_name":"Franco","last_name":"De Palma"},{"last_name":"Oppliger","first_name":"Fabian","full_name":"Oppliger, Fabian"},{"first_name":"Wonjin","last_name":"Jang","full_name":"Jang, Wonjin"},{"full_name":"Bosco, Stefano","first_name":"Stefano","last_name":"Bosco"},{"last_name":"Janik","first_name":"Marian","id":"396A1950-F248-11E8-B48F-1D18A9856A87","orcid":"0009-0003-9037-8831","full_name":"Janik, Marian"},{"full_name":"Calcaterra, Stefano","last_name":"Calcaterra","first_name":"Stefano"},{"orcid":"0000-0001-8342-202X","full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros"},{"last_name":"Isella","first_name":"Giovanni","full_name":"Isella, Giovanni"},{"full_name":"Loss, Daniel","last_name":"Loss","first_name":"Daniel"},{"full_name":"Scarlino, Pasquale","last_name":"Scarlino","first_name":"Pasquale"}],"external_id":{"pmid":["39580488"],"isi":["001362684200001"]},"publication_status":"published","article_number":"10177","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"pmid":1,"publication":"Nature Communications","has_accepted_license":"1","citation":{"chicago":"De Palma, Franco, Fabian Oppliger, Wonjin Jang, Stefano Bosco, Marian Janik, Stefano Calcaterra, Georgios Katsaros, Giovanni Isella, Daniel Loss, and Pasquale Scarlino. “Strong Hole-Photon Coupling in Planar Ge for Probing Charge Degree and Strongly Correlated States.” <i>Nature Communications</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41467-024-54520-7\">https://doi.org/10.1038/s41467-024-54520-7</a>.","ista":"De Palma F, Oppliger F, Jang W, Bosco S, Janik M, Calcaterra S, Katsaros G, Isella G, Loss D, Scarlino P. 2024. Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states. Nature Communications. 15, 10177.","short":"F. De Palma, F. Oppliger, W. Jang, S. Bosco, M. Janik, S. Calcaterra, G. Katsaros, G. Isella, D. Loss, P. Scarlino, Nature Communications 15 (2024).","ieee":"F. De Palma <i>et al.</i>, “Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states,” <i>Nature Communications</i>, vol. 15. Springer Nature, 2024.","apa":"De Palma, F., Oppliger, F., Jang, W., Bosco, S., Janik, M., Calcaterra, S., … Scarlino, P. (2024). Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-024-54520-7\">https://doi.org/10.1038/s41467-024-54520-7</a>","mla":"De Palma, Franco, et al. “Strong Hole-Photon Coupling in Planar Ge for Probing Charge Degree and Strongly Correlated States.” <i>Nature Communications</i>, vol. 15, 10177, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1038/s41467-024-54520-7\">10.1038/s41467-024-54520-7</a>.","ama":"De Palma F, Oppliger F, Jang W, et al. Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states. <i>Nature Communications</i>. 2024;15. doi:<a href=\"https://doi.org/10.1038/s41467-024-54520-7\">10.1038/s41467-024-54520-7</a>"},"file":[{"success":1,"checksum":"ef9f99a84089c388904cc8aa8d89c55a","file_id":"18611","file_name":"2024_NatureComm_dePalma.pdf","date_updated":"2024-12-03T11:00:15Z","date_created":"2024-12-03T11:00:15Z","relation":"main_file","access_level":"open_access","creator":"dernst","content_type":"application/pdf","file_size":5288092}],"department":[{"_id":"GeKa"}],"publisher":"Springer Nature","OA_place":"publisher","title":"Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states","_id":"18602","date_updated":"2025-09-08T14:46:06Z","OA_type":"gold","day":"01","publication_identifier":{"eissn":["2041-1723"]},"doi":"10.1038/s41467-024-54520-7","quality_controlled":"1","status":"public","oa_version":"Published Version","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","ddc":["530"],"type":"journal_article","article_processing_charge":"Yes"},{"day":"18","OA_type":"gold","date_updated":"2026-04-16T12:20:34Z","title":"Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons","_id":"18603","OA_place":"publisher","file":[{"access_level":"open_access","relation":"main_file","date_created":"2024-12-03T08:56:53Z","file_size":3057631,"content_type":"application/pdf","creator":"dernst","file_id":"18608","checksum":"7de2dcb50deb65dde05c80082bb85a82","success":1,"date_updated":"2024-12-03T08:56:53Z","file_name":"2024_PloSBio_Kim.pdf"}],"publisher":"Public Library of Science","department":[{"_id":"PeJo"},{"_id":"EM-Fac"},{"_id":"RySh"}],"publication":"PLoS Biology","has_accepted_license":"1","citation":{"ama":"Kim O, Okamoto Y, Kaufmann W, Brose N, Shigemoto R, Jonas PM. Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons. <i>PLoS Biology</i>. 2024;22(11). doi:<a href=\"https://doi.org/10.1371/journal.pbio.3002879\">10.1371/journal.pbio.3002879</a>","ieee":"O. Kim, Y. Okamoto, W. Kaufmann, N. Brose, R. Shigemoto, and P. M. Jonas, “Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons,” <i>PLoS Biology</i>, vol. 22, no. 11. Public Library of Science, 2024.","mla":"Kim, Olena, et al. “Presynaptic CAMP-PKA-Mediated Potentiation Induces Reconfiguration of Synaptic Vesicle Pools and Channel-Vesicle Coupling at Hippocampal Mossy Fiber Boutons.” <i>PLoS Biology</i>, vol. 22, no. 11, e3002879, Public Library of Science, 2024, doi:<a href=\"https://doi.org/10.1371/journal.pbio.3002879\">10.1371/journal.pbio.3002879</a>.","apa":"Kim, O., Okamoto, Y., Kaufmann, W., Brose, N., Shigemoto, R., &#38; Jonas, P. M. (2024). Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.3002879\">https://doi.org/10.1371/journal.pbio.3002879</a>","short":"O. Kim, Y. Okamoto, W. Kaufmann, N. Brose, R. Shigemoto, P.M. Jonas, PLoS Biology 22 (2024).","chicago":"Kim, Olena, Yuji Okamoto, Walter Kaufmann, Nils Brose, Ryuichi Shigemoto, and Peter M Jonas. “Presynaptic CAMP-PKA-Mediated Potentiation Induces Reconfiguration of Synaptic Vesicle Pools and Channel-Vesicle Coupling at Hippocampal Mossy Fiber Boutons.” <i>PLoS Biology</i>. Public Library of Science, 2024. <a href=\"https://doi.org/10.1371/journal.pbio.3002879\">https://doi.org/10.1371/journal.pbio.3002879</a>.","ista":"Kim O, Okamoto Y, Kaufmann W, Brose N, Shigemoto R, Jonas PM. 2024. Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons. PLoS Biology. 22(11), e3002879."},"article_processing_charge":"Yes","type":"journal_article","ddc":["570"],"oa_version":"Published Version","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","related_material":{"record":[{"id":"18296","relation":"research_data","status":"public"}]},"ec_funded":1,"status":"public","publication_identifier":{"eissn":["1545-7885"],"issn":["1544-9173"]},"doi":"10.1371/journal.pbio.3002879","quality_controlled":"1","month":"11","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"PreCl"}],"abstract":[{"lang":"eng","text":"It is widely believed that information storage in neuronal circuits involves nanoscopic structural changes at synapses, resulting in the formation of synaptic engrams. However, direct evidence for this hypothesis is lacking. To test this conjecture, we combined chemical potentiation, functional analysis by paired pre-postsynaptic recordings, and structural analysis by electron microscopy (EM) and freeze-fracture replica labeling (FRL) at the rodent hippocampal mossy fiber synapse, a key synapse in the trisynaptic circuit of the hippocampus. Biophysical analysis of synaptic transmission revealed that forskolin-induced chemical potentiation increased the readily releasable vesicle pool size and vesicular release probability by 146% and 49%, respectively. Structural analysis of mossy fiber synapses by EM and FRL demonstrated an increase in the number of vesicles close to the plasma membrane and the number of clusters of the priming protein Munc13-1, indicating an increase in the number of both docked and primed vesicles. Furthermore, FRL analysis revealed a significant reduction of the distance between Munc13-1 and CaV2.1 Ca2+ channels, suggesting reconfiguration of the channel-vesicle coupling nanotopography. Our results indicate that presynaptic plasticity is associated with structural reorganization of active zones. We propose that changes in potential nanoscopic organization at synaptic vesicle release sites may be correlates of learning and memory at a plastic central synapse."}],"volume":22,"APC_amount":"6248,82 EUR","date_created":"2024-12-01T23:01:54Z","date_published":"2024-11-18T00:00:00Z","file_date_updated":"2024-12-03T08:56:53Z","year":"2024","article_type":"original","intvolume":"        22","language":[{"iso":"eng"}],"isi":1,"acknowledgement":"We thank Carolina Borges-Merjane, Jing-Jing Chen, Katharina Lichter, and Samuel Young for critically reading the manuscript; the Electron Microscopy Facility of ISTA, in particular Vanessa Zheden, for extensive support, advice, and experimental assistance; the Preclinical Facility of ISTA, in particular Victoria Wimmer and Michael Schunn, for experimental assistance; Florian Marr and Christina Altmutter for technical support; Alois Schlögl for help with analysis; and Eleftheria Kralli-Beller for manuscript editing. We also thank Cordelia Imig for providing Munc13-1cKO-Munc13-2/3(−/−) mutant mice. Part of the work has been published in O.K.’s thesis in partial fulfillment of the requirements for the degree of Doctor of Philosophy.\r\nThis project received funding from the European Research Council and European Union’s Horizon 2020 research and innovation programme (ERC 692692 to P.J.; https://cordis.europa.eu/project/id/692692/de) and from the Fond zur Förderung der Wissenschaftlichen Forschung (Z312-B27 Wittgenstein award to P.J., https://www.fwf.ac.at/en/funding/portfolio/projects/fwf-wittgenstein-award; W1205-B09 and P36232-B to P.J., https://www.fwf.ac.at/en/funding; I6166-B to R.S.; https://www.fwf.ac.at/en/funding). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","oa":1,"issue":"11","publication_status":"published","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_number":"e3002879","pmid":1,"external_id":{"isi":["001358568700003"],"pmid":["39556620"]},"corr_author":"1","author":[{"orcid":"0000-0003-2344-1039","full_name":"Kim, Olena","id":"3F8ABDDA-F248-11E8-B48F-1D18A9856A87","first_name":"Olena","last_name":"Kim"},{"last_name":"Okamoto","first_name":"Yuji","id":"3337E116-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0408-6094","full_name":"Okamoto, Yuji"},{"first_name":"Walter","last_name":"Kaufmann","orcid":"0000-0001-9735-5315","full_name":"Kaufmann, Walter","id":"3F99E422-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Brose, Nils","first_name":"Nils","last_name":"Brose"},{"last_name":"Shigemoto","first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444","full_name":"Shigemoto, Ryuichi"},{"last_name":"Jonas","first_name":"Peter M","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804","full_name":"Jonas, Peter M"}],"project":[{"name":"Biophysics and circuit function of a giant cortical glutamatergic synapse","call_identifier":"H2020","grant_number":"692692","_id":"25B7EB9E-B435-11E9-9278-68D0E5697425"},{"_id":"25C5A090-B435-11E9-9278-68D0E5697425","name":"Synaptic communication in neuronal microcircuits","call_identifier":"FWF","grant_number":"Z00312"},{"name":"Mechanisms of GABA release in hippocampal circuits","grant_number":"P36232","_id":"bd88be38-d553-11ed-ba76-81d5a70a6ef5"},{"name":"Structural & functional basis of presynaptic plasticity","grant_number":"I06166","_id":"b1b85715-d554-11ed-a5ad-84a07fc9f18e"},{"call_identifier":"FWF","grant_number":"W01205","name":"Zellkommunikation in Gesundheit und Krankheit","_id":"25C3DBB6-B435-11E9-9278-68D0E5697425"},{"name":"FWF Open Access Fund","call_identifier":"FWF","_id":"3AC91DDA-15DF-11EA-824D-93A3E7B544D1"}],"DOAJ_listed":"1"},{"ddc":["510"],"article_processing_charge":"No","arxiv":1,"type":"journal_article","status":"public","doi":"10.7155/jgaa.v28i2.2988","publication_identifier":{"issn":["1526-1719"]},"quality_controlled":"1","scopus_import":"1","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"47-82","OA_type":"gold","date_updated":"2024-12-03T09:49:18Z","day":"03","file":[{"file_size":1582493,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","date_created":"2024-12-03T09:45:00Z","relation":"main_file","date_updated":"2024-12-03T09:45:00Z","file_name":"2024_JourGraphAlgorithms_deNooijer.pdf","checksum":"be611da6f9d790dc980d6fb7283fe889","file_id":"18609","success":1}],"department":[{"_id":"UlWa"},{"_id":"HeEd"}],"publisher":"Brown University","has_accepted_license":"1","publication":"Journal of Graph Algorithms and Applications","citation":{"ieee":"P. De Nooijer <i>et al.</i>, “Removing popular faces in curve arrangements,” <i>Journal of Graph Algorithms and Applications</i>, vol. 28, no. 2. Brown University, pp. 47–82, 2024.","mla":"De Nooijer, Phoebe, et al. “Removing Popular Faces in Curve Arrangements.” <i>Journal of Graph Algorithms and Applications</i>, vol. 28, no. 2, Brown University, 2024, pp. 47–82, doi:<a href=\"https://doi.org/10.7155/jgaa.v28i2.2988\">10.7155/jgaa.v28i2.2988</a>.","apa":"De Nooijer, P., Terziadis, S., Weinberger, A., Masárová, Z., Mchedlidze, T., Löffler, M., &#38; Rote, G. (2024). Removing popular faces in curve arrangements. <i>Journal of Graph Algorithms and Applications</i>. Brown University. <a href=\"https://doi.org/10.7155/jgaa.v28i2.2988\">https://doi.org/10.7155/jgaa.v28i2.2988</a>","ama":"De Nooijer P, Terziadis S, Weinberger A, et al. Removing popular faces in curve arrangements. <i>Journal of Graph Algorithms and Applications</i>. 2024;28(2):47-82. doi:<a href=\"https://doi.org/10.7155/jgaa.v28i2.2988\">10.7155/jgaa.v28i2.2988</a>","chicago":"De Nooijer, Phoebe, Soeren Terziadis, Alexandra Weinberger, Zuzana Masárová, Tamara Mchedlidze, Maarten Löffler, and Günter Rote. “Removing Popular Faces in Curve Arrangements.” <i>Journal of Graph Algorithms and Applications</i>. Brown University, 2024. <a href=\"https://doi.org/10.7155/jgaa.v28i2.2988\">https://doi.org/10.7155/jgaa.v28i2.2988</a>.","ista":"De Nooijer P, Terziadis S, Weinberger A, Masárová Z, Mchedlidze T, Löffler M, Rote G. 2024. Removing popular faces in curve arrangements. Journal of Graph Algorithms and Applications. 28(2), 47–82.","short":"P. De Nooijer, S. Terziadis, A. Weinberger, Z. Masárová, T. Mchedlidze, M. Löffler, G. Rote, Journal of Graph Algorithms and Applications 28 (2024) 47–82."},"_id":"18604","title":"Removing popular faces in curve arrangements","OA_place":"publisher","author":[{"full_name":"De Nooijer, Phoebe","first_name":"Phoebe","last_name":"De Nooijer"},{"full_name":"Terziadis, Soeren","first_name":"Soeren","last_name":"Terziadis"},{"full_name":"Weinberger, Alexandra","first_name":"Alexandra","last_name":"Weinberger"},{"id":"45CFE238-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6660-1322","full_name":"Masárová, Zuzana","last_name":"Masárová","first_name":"Zuzana"},{"last_name":"Mchedlidze","first_name":"Tamara","full_name":"Mchedlidze, Tamara"},{"full_name":"Löffler, Maarten","first_name":"Maarten","last_name":"Löffler"},{"last_name":"Rote","first_name":"Günter","full_name":"Rote, Günter"}],"publication_status":"published","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"arxiv":["2202.12175"]},"corr_author":"1","DOAJ_listed":"1","volume":28,"month":"11","abstract":[{"text":"A face in a curve arrangement is called popular if it is bounded by the same curve multiple times. Motivated by the automatic generation of curved nonogram puzzles, we investigate possibilities to eliminate the popular faces in an arrangement by inserting a single additional curve. This turns out to be NP-hard; however, it becomes tractable when the number of popular faces is small: We present a randomized FPT-time algorithm where the parameter is the number of popular faces.","lang":"eng"}],"intvolume":"        28","acknowledgement":"This work was initiated at the 16th European Research Week on Geometric Graphs in Strobl in 2019. A.W. has been supported by the Austrian Science Fund (FWF): W1230. S.T. has been funded by the Vienna Science and Technology Fund (WWTF) [10.47379/ICT19035] and by the NWO Gravitation project NETWORKS under grant no. 024.002.003. Part of the work was done while A.W. was emplyed at Graz University of Technology. Preliminary versions of this work have been presented at the 38th European Workshop on Computational Geometry (EuroCG\r\n2022) in Perugia [10] and at the 31st International Symposium on Graph Drawing and Network Visualization (GD 2023) in Isola delle Femmine [11].","language":[{"iso":"eng"}],"oa":1,"issue":"2","date_created":"2024-12-01T23:01:54Z","date_published":"2024-11-03T00:00:00Z","file_date_updated":"2024-12-03T09:45:00Z","year":"2024","article_type":"original"},{"_id":"18616","title":"Quantum scars make their mark in graphene","publication":"Nature","citation":{"short":"D. Abanin, M. Serbyn, Nature 635 (2024) 825–826.","ista":"Abanin D, Serbyn M. 2024. Quantum scars make their mark in graphene. Nature. 635(8040), 825–826.","chicago":"Abanin, Dmitry, and Maksym Serbyn. “Quantum Scars Make Their Mark in Graphene.” <i>Nature</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/d41586-024-03649-y\">https://doi.org/10.1038/d41586-024-03649-y</a>.","ama":"Abanin D, Serbyn M. Quantum scars make their mark in graphene. <i>Nature</i>. 2024;635(8040):825-826. doi:<a href=\"https://doi.org/10.1038/d41586-024-03649-y\">10.1038/d41586-024-03649-y</a>","mla":"Abanin, Dmitry, and Maksym Serbyn. “Quantum Scars Make Their Mark in Graphene.” <i>Nature</i>, vol. 635, no. 8040, Springer Nature, 2024, pp. 825–26, doi:<a href=\"https://doi.org/10.1038/d41586-024-03649-y\">10.1038/d41586-024-03649-y</a>.","apa":"Abanin, D., &#38; Serbyn, M. (2024). Quantum scars make their mark in graphene. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/d41586-024-03649-y\">https://doi.org/10.1038/d41586-024-03649-y</a>","ieee":"D. Abanin and M. Serbyn, “Quantum scars make their mark in graphene,” <i>Nature</i>, vol. 635, no. 8040. Springer Nature, pp. 825–826, 2024."},"department":[{"_id":"MaSe"}],"publisher":"Springer Nature","day":"27","date_updated":"2025-09-08T14:57:35Z","OA_type":"closed access","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"None","page":"825-826","publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"doi":"10.1038/d41586-024-03649-y","quality_controlled":"1","status":"public","type":"journal_article","article_processing_charge":"No","date_published":"2024-11-27T00:00:00Z","article_type":"letter_note","year":"2024","date_created":"2024-12-03T18:08:16Z","language":[{"iso":"eng"}],"issue":"8040","isi":1,"intvolume":"       635","abstract":[{"lang":"eng","text":"By patterning an ultrathin layered structure with tiny wells, physicists have created and imaged peculiar states known as quantum scars — revealing behaviour that could be used to boost the performance of electronic devices."}],"month":"11","volume":635,"external_id":{"pmid":["39604614"],"isi":["001367935000029"]},"publication_status":"published","pmid":1,"author":[{"last_name":"Abanin","first_name":"Dmitry","full_name":"Abanin, Dmitry"},{"first_name":"Maksym","last_name":"Serbyn","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"}]},{"volume":651,"month":"08","abstract":[{"text":"Any complex-valued polynomial on (Rn)k decomposes into an algebraic combination of O(n)-invariant polynomials and harmonic polynomials. This decomposition, separation of variables, is granted to be unique if n≥2k−1. We prove that the condition n≥2k−1 is not only sufficient, but also necessary for uniqueness of the separation. Moreover, we describe the structure of non-uniqueness of the separation in the boundary cases when n=2k−2 and n=2k−3.\r\nFormally, we study the kernel of a multiplication map ϕ carrying out separation of variables. We devise a general algorithmic procedure for describing Ker ϕ in the restricted non-stable range k≤n<2k−1. In the full non-stable range n<2k−1, we give formulas for highest weights of generators of the kernel as well as formulas for its Hilbert series. Using the developed methods, we obtain a list of highest weight vectors generating Ker ϕ.","lang":"eng"}],"intvolume":"       651","oa":1,"isi":1,"language":[{"iso":"eng"}],"acknowledgement":"The author is sincerely grateful for guidance, advice and valuable feedback from Roman Lávička.","date_created":"2024-12-04T07:58:45Z","year":"2024","article_type":"original","file_date_updated":"2024-12-09T13:56:26Z","date_published":"2024-08-01T00:00:00Z","author":[{"full_name":"Beďatš, Daniel","orcid":"0009-0004-1828-0044","id":"78ea3cc9-31e7-11ee-aa02-a6169bbfe1f1","first_name":"Daniel","last_name":"Beďatš"}],"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publication_status":"published","corr_author":"1","external_id":{"isi":["001232775600001"],"arxiv":["2309.11154"]},"OA_type":"hybrid","date_updated":"2025-09-08T14:57:00Z","day":"01","department":[{"_id":"UlWa"}],"publisher":"Elsevier","file":[{"success":1,"checksum":"7b01c89128ba16d5334dfab389a03878","file_id":"18638","file_name":"2024_JourAlgebra_Bedats.pdf","date_updated":"2024-12-09T13:56:26Z","relation":"main_file","date_created":"2024-12-09T13:56:26Z","access_level":"open_access","creator":"dernst","file_size":486969,"content_type":"application/pdf"}],"citation":{"apa":"Beďatš, D. (2024). Separation of variables for scalar-valued polynomials in the non-stable range. <i>Journal of Algebra</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jalgebra.2024.04.013\">https://doi.org/10.1016/j.jalgebra.2024.04.013</a>","mla":"Beďatš, Daniel. “Separation of Variables for Scalar-Valued Polynomials in the Non-Stable Range.” <i>Journal of Algebra</i>, vol. 651, Elsevier, 2024, pp. 281–304, doi:<a href=\"https://doi.org/10.1016/j.jalgebra.2024.04.013\">10.1016/j.jalgebra.2024.04.013</a>.","ieee":"D. Beďatš, “Separation of variables for scalar-valued polynomials in the non-stable range,” <i>Journal of Algebra</i>, vol. 651. Elsevier, pp. 281–304, 2024.","ama":"Beďatš D. Separation of variables for scalar-valued polynomials in the non-stable range. <i>Journal of Algebra</i>. 2024;651:281-304. doi:<a href=\"https://doi.org/10.1016/j.jalgebra.2024.04.013\">10.1016/j.jalgebra.2024.04.013</a>","ista":"Beďatš D. 2024. Separation of variables for scalar-valued polynomials in the non-stable range. Journal of Algebra. 651, 281–304.","chicago":"Beďatš, Daniel. “Separation of Variables for Scalar-Valued Polynomials in the Non-Stable Range.” <i>Journal of Algebra</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.jalgebra.2024.04.013\">https://doi.org/10.1016/j.jalgebra.2024.04.013</a>.","short":"D. Beďatš, Journal of Algebra 651 (2024) 281–304."},"publication":"Journal of Algebra","has_accepted_license":"1","title":"Separation of variables for scalar-valued polynomials in the non-stable range","_id":"18617","OA_place":"publisher","ddc":["510"],"arxiv":1,"article_processing_charge":"Yes (via OA deal)","type":"journal_article","status":"public","quality_controlled":"1","doi":"10.1016/j.jalgebra.2024.04.013","publication_identifier":{"issn":["0021-8693"]},"page":"281-304","scopus_import":"1","oa_version":"Published Version","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"external_id":{"arxiv":["2403.02395"],"pmid":["39642519"],"isi":["001369697800005"]},"publication_status":"published","pmid":1,"article_number":"216601","author":[{"last_name":"Shen","first_name":"Ruizhe","full_name":"Shen, Ruizhe"},{"last_name":"Qin","first_name":"Fang","full_name":"Qin, Fang"},{"id":"6c292945-a610-11ed-9eec-c3be1ad62a80","full_name":"Desaules, Jean-Yves Marc","orcid":"0000-0002-3749-6375","last_name":"Desaules","first_name":"Jean-Yves Marc"},{"first_name":"Zlatko","last_name":"Papić","full_name":"Papić, Zlatko"},{"first_name":"Ching Hua","last_name":"Lee","full_name":"Lee, Ching Hua"}],"project":[{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"abstract":[{"lang":"eng","text":"In contrast with extended Bloch waves, a single particle can become spatially localized due to the so-called skin effect originating from non-Hermitian pumping. Here we show that in kinetically constrained many-body systems, the skin effect can instead manifest as dynamical amplification within the Fock space, beyond the intuitively expected and previously studied particle localization and clustering. We exemplify this non-Hermitian Fock skin effect in an asymmetric version of the PXP model and show that it gives rise to ergodicity-breaking eigenstates—the non-Hermitian analogs of quantum many-body scars. A distinguishing feature of these non-Hermitian scars is their enhanced robustness against external disorders. We propose an experimental realization of the non-Hermitian scar enhancement in a tilted Bose-Hubbard optical lattice with laser-induced loss. Additionally, we implement digital simulations of such scar enhancement on the IBM quantum processor. Our results show that the Fock skin effect provides a powerful tool for creating robust nonergodic states in generic open quantum systems."}],"month":"11","volume":133,"date_published":"2024-11-22T00:00:00Z","article_type":"original","year":"2024","date_created":"2024-12-08T23:01:55Z","oa":1,"language":[{"iso":"eng"}],"acknowledgement":"F. Q. and C. H. L. acknowledge support from the QEP2.0 Grant from the Singapore National Research Foundation (Grant No. NRF2021-QEP2-02-P09) and the Singapore MOE Tier-II Grant (Grant No. MOE-T2EP50222-0003). J.-Y. D. and Z. P. acknowledge support by the Leverhulme Trust Research Leadership Award RL-2019-015. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. This research was supported in part by Grant No. NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP). We acknowledge the use of IBM Quantum services for this work. The views expressed are those of the authors and do not reflect the official policy or position of IBM or the IBM Quantum team.","isi":1,"issue":"21","intvolume":"       133","type":"journal_article","article_processing_charge":"No","arxiv":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","oa_version":"Preprint","related_material":{"record":[{"status":"public","relation":"research_data","id":"17471"}]},"doi":"10.1103/PhysRevLett.133.216601","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"quality_controlled":"1","ec_funded":1,"status":"public","day":"22","date_updated":"2026-06-10T07:52:52Z","OA_type":"green","OA_place":"repository","title":"Enhanced many-body quantum scars from the non-hermitian fock skin effect","_id":"18627","publication":"Physical Review Letters","citation":{"short":"R. Shen, F. Qin, J.-Y.M. Desaules, Z. Papić, C.H. Lee, Physical Review Letters 133 (2024).","ista":"Shen R, Qin F, Desaules J-YM, Papić Z, Lee CH. 2024. Enhanced many-body quantum scars from the non-hermitian fock skin effect. Physical Review Letters. 133(21), 216601.","chicago":"Shen, Ruizhe, Fang Qin, Jean-Yves Marc Desaules, Zlatko Papić, and Ching Hua Lee. “Enhanced Many-Body Quantum Scars from the Non-Hermitian Fock Skin Effect.” <i>Physical Review Letters</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevLett.133.216601\">https://doi.org/10.1103/PhysRevLett.133.216601</a>.","ama":"Shen R, Qin F, Desaules J-YM, Papić Z, Lee CH. Enhanced many-body quantum scars from the non-hermitian fock skin effect. <i>Physical Review Letters</i>. 2024;133(21). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.133.216601\">10.1103/PhysRevLett.133.216601</a>","apa":"Shen, R., Qin, F., Desaules, J.-Y. M., Papić, Z., &#38; Lee, C. H. (2024). Enhanced many-body quantum scars from the non-hermitian fock skin effect. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.133.216601\">https://doi.org/10.1103/PhysRevLett.133.216601</a>","mla":"Shen, Ruizhe, et al. “Enhanced Many-Body Quantum Scars from the Non-Hermitian Fock Skin Effect.” <i>Physical Review Letters</i>, vol. 133, no. 21, 216601, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.133.216601\">10.1103/PhysRevLett.133.216601</a>.","ieee":"R. Shen, F. Qin, J.-Y. M. Desaules, Z. Papić, and C. H. Lee, “Enhanced many-body quantum scars from the non-hermitian fock skin effect,” <i>Physical Review Letters</i>, vol. 133, no. 21. American Physical Society, 2024."},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2403.02395","open_access":"1"}],"publisher":"American Physical Society","department":[{"_id":"MaSe"}]},{"date_published":"2024-11-12T00:00:00Z","file_date_updated":"2024-12-09T09:43:33Z","year":"2024","article_type":"original","date_created":"2024-12-08T23:01:55Z","language":[{"iso":"eng"}],"oa":1,"issue":"11","acknowledgement":"E. De Andrés is supported by Margarita-Salas Grant No. UP2021-035 under the Next Generation-EU program. This research was also funded by grant PID2020-113051RB-C31 from MCIN/AEI/10.13039/501100011033/FEDER, UE.\r\nWe gratefully acknowledge Michal Cieply and Dariusz Ignatiuk from the Faculty of Natural Sciences, University of Silesia in Katowice, Poland, for their essential contributions to the Hansbreen data collection. We also extend our sincere thanks to Waldemar Walczowski from the Institute of Oceanology, Polish Academy of Sciences, Sopot, Poland, for providing Hansbuka data. Additionally, we would like to thank two anonymous reviewers for their constructive feedback, which helped to enhance the quality and clarity of this work.","intvolume":"        11","abstract":[{"lang":"eng","text":"Arctic tidewater glaciers are retreating, serving as key indicators of global warming. This study aims to assess how subglacial hydrology affects glacier front retreat by comparing two glacier–fjord models of the Hansbreen glacier: one incorporating a detailed subglacial hydrology model and another simplifying the subglacial discharge to a single channel centered in the flow line. We first validate the subglacial hydrology model by comparing its discharge channels with observations of plume activity. Simulations conducted from April to December 2010 revealed that the glacier front position aligns more closely with the observations in the coupled model than in the simplified version. Furthermore, the mass loss due to calving and submarine melting is greater in the coupled model, with the calving mass loss reaching 6 Mt by the end of the simulation compared to 4 Mt in the simplified model. These findings highlight the critical role of subglacial hydrology in predicting glacier dynamics and emphasize the importance of detailed modeling in understanding the responses of Arctic tidewater glaciers to climate change."}],"month":"11","volume":11,"DOAJ_listed":"1","corr_author":"1","publication_status":"published","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_number":"193","author":[{"full_name":"De Andrés, Eva","first_name":"Eva","last_name":"De Andrés"},{"full_name":"Muñoz Hermosilla, José M","id":"e1037a6d-646e-11ef-b402-e0ed9ab0901e","first_name":"José M","last_name":"Muñoz Hermosilla"},{"last_name":"Shahateet","first_name":"Kaian","full_name":"Shahateet, Kaian"},{"full_name":"Otero, Jaime","last_name":"Otero","first_name":"Jaime"}],"OA_place":"publisher","_id":"18628","title":"The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard","has_accepted_license":"1","publication":"Hydrology","citation":{"ama":"De Andrés E, Muñoz Hermosilla JM, Shahateet K, Otero J. The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard. <i>Hydrology</i>. 2024;11(11). doi:<a href=\"https://doi.org/10.3390/hydrology11110193\">10.3390/hydrology11110193</a>","mla":"De Andrés, Eva, et al. “The Importance of Solving Subglaciar Hydrology in Modeling Glacier Retreat: A Case Study of Hansbreen, Svalbard.” <i>Hydrology</i>, vol. 11, no. 11, 193, MDPI, 2024, doi:<a href=\"https://doi.org/10.3390/hydrology11110193\">10.3390/hydrology11110193</a>.","apa":"De Andrés, E., Muñoz Hermosilla, J. M., Shahateet, K., &#38; Otero, J. (2024). The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard. <i>Hydrology</i>. MDPI. <a href=\"https://doi.org/10.3390/hydrology11110193\">https://doi.org/10.3390/hydrology11110193</a>","ieee":"E. De Andrés, J. M. Muñoz Hermosilla, K. Shahateet, and J. Otero, “The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard,” <i>Hydrology</i>, vol. 11, no. 11. MDPI, 2024.","short":"E. De Andrés, J.M. Muñoz Hermosilla, K. Shahateet, J. Otero, Hydrology 11 (2024).","ista":"De Andrés E, Muñoz Hermosilla JM, Shahateet K, Otero J. 2024. The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard. Hydrology. 11(11), 193.","chicago":"De Andrés, Eva, José M Muñoz Hermosilla, Kaian Shahateet, and Jaime Otero. “The Importance of Solving Subglaciar Hydrology in Modeling Glacier Retreat: A Case Study of Hansbreen, Svalbard.” <i>Hydrology</i>. MDPI, 2024. <a href=\"https://doi.org/10.3390/hydrology11110193\">https://doi.org/10.3390/hydrology11110193</a>."},"file":[{"creator":"dernst","content_type":"application/pdf","file_size":5709093,"date_created":"2024-12-09T09:43:33Z","relation":"main_file","access_level":"open_access","file_name":"2024_Hydrology_deAndres.pdf","date_updated":"2024-12-09T09:43:33Z","success":1,"file_id":"18635","checksum":"0665c5bfca97782bf0b041f23dd7e8d7"}],"department":[{"_id":"FrPe"}],"publisher":"MDPI","day":"12","date_updated":"2024-12-09T09:43:48Z","OA_type":"gold","scopus_import":"1","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"status":"public","id":"18634","relation":"used_in_publication"}]},"publication_identifier":{"eissn":["2306-5338"]},"doi":"10.3390/hydrology11110193","quality_controlled":"1","status":"public","type":"journal_article","article_processing_charge":"Yes","ddc":["550"]},{"publication_status":"published","article_number":"053317","external_id":{"arxiv":["2406.00217"],"isi":["001362623400019"]},"author":[{"first_name":"Neelam","last_name":"Shukla","full_name":"Shukla, Neelam"},{"id":"37D278BC-F248-11E8-B48F-1D18A9856A87","full_name":"Volosniev, Artem","orcid":"0000-0003-0393-5525","last_name":"Volosniev","first_name":"Artem"},{"full_name":"Armstrong, Jeremy R.","last_name":"Armstrong","first_name":"Jeremy R."}],"date_created":"2024-12-08T23:01:55Z","date_published":"2024-11-18T00:00:00Z","year":"2024","article_type":"original","intvolume":"       110","oa":1,"acknowledgement":"The authors acknowledge that this material is based upon work supported by the National Science Foundation/EPSCoR RII Track-1: Emergent Quantum Materials and Technologies (EQUATE), Award No. OIA-2044049.","issue":"5","isi":1,"language":[{"iso":"eng"}],"month":"11","abstract":[{"lang":"eng","text":"We study a three-dimensional Gross-Pitaevskii equation that describes a static impurity in a dipolar Bose-Einstein condensate. Our focus is on the interplay between the shape of the impurity and the anisotropy of the medium manifested in the energy and the density of the system. Without external confinement, properties of the system are derived with basic analytical approaches. For a system in a harmonic trap, the model is investigated numerically, using the split-step Crank-Nicolson method. Our results demonstrate that the impurity self-energy is minimized when its shape more closely aligns with the anisotropic character of the bath; in particular a prolate deformed impurity aligned with the direction of the dipoles has the smallest self-energy for a repulsive impurity. Our work complements studies of impurities in Bose gases with zero-range interactions and paves the way for studies of dipolar polarons with a Gross-Pitaevskii equation."}],"volume":110,"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Preprint","status":"public","doi":"10.1103/PhysRevA.110.053317","publication_identifier":{"issn":["2469-9926"],"eissn":["2469-9934"]},"quality_controlled":"1","article_processing_charge":"No","arxiv":1,"type":"journal_article","_id":"18629","title":"Anisotropic potential immersed in a dipolar Bose-Einstein condensate","OA_place":"repository","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2406.00217","open_access":"1"}],"department":[{"_id":"MiLe"}],"publisher":"American Physical Society","publication":"Physical Review A","citation":{"short":"N. Shukla, A. Volosniev, J.R. Armstrong, Physical Review A 110 (2024).","chicago":"Shukla, Neelam, Artem Volosniev, and Jeremy R. Armstrong. “Anisotropic Potential Immersed in a Dipolar Bose-Einstein Condensate.” <i>Physical Review A</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevA.110.053317\">https://doi.org/10.1103/PhysRevA.110.053317</a>.","ista":"Shukla N, Volosniev A, Armstrong JR. 2024. Anisotropic potential immersed in a dipolar Bose-Einstein condensate. Physical Review A. 110(5), 053317.","ama":"Shukla N, Volosniev A, Armstrong JR. Anisotropic potential immersed in a dipolar Bose-Einstein condensate. <i>Physical Review A</i>. 2024;110(5). doi:<a href=\"https://doi.org/10.1103/PhysRevA.110.053317\">10.1103/PhysRevA.110.053317</a>","ieee":"N. Shukla, A. Volosniev, and J. R. Armstrong, “Anisotropic potential immersed in a dipolar Bose-Einstein condensate,” <i>Physical Review A</i>, vol. 110, no. 5. American Physical Society, 2024.","apa":"Shukla, N., Volosniev, A., &#38; Armstrong, J. R. (2024). Anisotropic potential immersed in a dipolar Bose-Einstein condensate. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.110.053317\">https://doi.org/10.1103/PhysRevA.110.053317</a>","mla":"Shukla, Neelam, et al. “Anisotropic Potential Immersed in a Dipolar Bose-Einstein Condensate.” <i>Physical Review A</i>, vol. 110, no. 5, 053317, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevA.110.053317\">10.1103/PhysRevA.110.053317</a>."},"day":"18","OA_type":"green","date_updated":"2025-09-08T14:56:22Z"},{"ddc":["000"],"arxiv":1,"article_processing_charge":"Yes","type":"journal_article","status":"public","ec_funded":1,"quality_controlled":"1","doi":"10.46298/lmcs-20(4:11)2024","publication_identifier":{"eissn":["1860-5974"]},"page":"11:1-11:34","related_material":{"record":[{"relation":"earlier_version","id":"10004","status":"public"}]},"oa_version":"Published Version","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"gold","date_updated":"2025-09-08T14:54:14Z","alternative_title":["LMCS"],"day":"12","publisher":"EPI Sciences","department":[{"_id":"KrCh"}],"file":[{"file_name":"2024_LMCS_Chatterjee.pdf","date_updated":"2024-12-09T08:38:48Z","success":1,"checksum":"b3315c74ce18ce0a30ed33d8c9972992","file_id":"18633","creator":"dernst","content_type":"application/pdf","file_size":416814,"relation":"main_file","date_created":"2024-12-09T08:38:48Z","access_level":"open_access"}],"citation":{"chicago":"Chatterjee, Krishnendu, and Laurent Doyen. “Stochastic Processes with Expected Stopping Time.” <i>Logical Methods in Computer Science</i>. EPI Sciences, 2024. <a href=\"https://doi.org/10.46298/lmcs-20(4:11)2024\">https://doi.org/10.46298/lmcs-20(4:11)2024</a>.","ista":"Chatterjee K, Doyen L. 2024. Stochastic processes with expected stopping time. Logical Methods in Computer Science. 20(4), 11:1-11:34.","short":"K. Chatterjee, L. Doyen, Logical Methods in Computer Science 20 (2024) 11:1-11:34.","ieee":"K. Chatterjee and L. Doyen, “Stochastic processes with expected stopping time,” <i>Logical Methods in Computer Science</i>, vol. 20, no. 4. EPI Sciences, p. 11:1-11:34, 2024.","apa":"Chatterjee, K., &#38; Doyen, L. (2024). Stochastic processes with expected stopping time. <i>Logical Methods in Computer Science</i>. EPI Sciences. <a href=\"https://doi.org/10.46298/lmcs-20(4:11)2024\">https://doi.org/10.46298/lmcs-20(4:11)2024</a>","mla":"Chatterjee, Krishnendu, and Laurent Doyen. “Stochastic Processes with Expected Stopping Time.” <i>Logical Methods in Computer Science</i>, vol. 20, no. 4, EPI Sciences, 2024, p. 11:1-11:34, doi:<a href=\"https://doi.org/10.46298/lmcs-20(4:11)2024\">10.46298/lmcs-20(4:11)2024</a>.","ama":"Chatterjee K, Doyen L. Stochastic processes with expected stopping time. <i>Logical Methods in Computer Science</i>. 2024;20(4):11:1-11:34. doi:<a href=\"https://doi.org/10.46298/lmcs-20(4:11)2024\">10.46298/lmcs-20(4:11)2024</a>"},"has_accepted_license":"1","publication":"Logical Methods in Computer Science","_id":"18630","title":"Stochastic processes with expected stopping time","OA_place":"publisher","author":[{"first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Doyen, Laurent","last_name":"Doyen","first_name":"Laurent"}],"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publication_status":"published","corr_author":"1","external_id":{"arxiv":["2104.07278"],"isi":["001367316400002"]},"project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","grant_number":"863818"}],"DOAJ_listed":"1","volume":20,"month":"11","abstract":[{"text":"Markov chains are the de facto finite-state model for stochastic dynamical systems, and Markov decision processes (MDPs) extend Markov chains by incorporating non-deterministic behaviors. Given an MDP and rewards on states, a classical optimization criterion is the maximal expected total reward where the MDP stops after T steps, which can be computed by a simple dynamic programming algorithm. We consider a natural generalization of the problem where the stopping times can be chosen according to a probability distribution, such that the expected stopping time is T, to optimize the expected total reward. Quite surprisingly we establish inter-reducibility of the expected stopping-time problem for Markov chains with the Positivity problem (which is related to the well-known Skolem problem), for which establishing either decidability or undecidability would be a major breakthrough. Given the hardness of the exact problem, we consider the approximate version of the problem: we show that it can be solved in exponential time for Markov chains and in exponential space for MDPs.","lang":"eng"}],"intvolume":"        20","oa":1,"issue":"4","language":[{"iso":"eng"}],"isi":1,"acknowledgement":"The authors are grateful to the anonymous reviewers of LICS 2021 and of a previous version of this paper for insightful comments that helped improving the presentation. The research presented in this paper was partially supported by the grant ERC CoG 863818 (ForM-SMArt).","date_created":"2024-12-08T23:01:56Z","year":"2024","article_type":"original","date_published":"2024-11-12T00:00:00Z","file_date_updated":"2024-12-09T08:38:48Z"},{"date_created":"2024-12-11T09:10:54Z","year":"2024","article_type":"original","date_published":"2024-05-01T00:00:00Z","intvolume":"        31","acknowledgement":"We are very grateful to K. Abe, L. G. Hernandez, C. Kobayashi, K. Straßer and M. Zaczek for their contributions and technical support. We thank N. Thomä for advice on SeEN-seq. We are grateful to A. Musacchio for insightful discussions. We thank J.-M. Peters for critical reading of the manuscript and all members of K.T.’s laboratory for discussions. We thank T. Schäfer at the cryo-EM facility for assistance in cryo-EM data collection, and R. H. Kim for sequencing at the NGS facility, MPIB. K.T. is an Honorary Professor at the Department of Biology, Ludwig-Maximilians-University, Munich. Funding: European Research Council grant ERC-CoG-818556 TotipotentZygotChrom (K.T.). European Research Council grant ERC-StG-804098 ReplisomeBypass (K.D.). Max Planck Society (K.T., K.D.).","language":[{"iso":"eng"}],"oa":1,"month":"05","abstract":[{"text":"Gene expression during natural and induced reprogramming is controlled by pioneer transcription factors that initiate transcription from closed chromatin. Nr5a2 is a key pioneer factor that regulates zygotic genome activation in totipotent embryos, pluripotency in embryonic stem cells and metabolism in adult tissues, but the mechanism of its pioneer activity remains poorly understood. Here, we present a cryo-electron microscopy structure of human NR5A2 bound to a nucleosome. The structure shows that the conserved carboxy-terminal extension (CTE) loop of the NR5A2 DNA-binding domain competes with a DNA minor groove anchor of the nucleosome and releases entry-exit site DNA. Mutational analysis showed that NR5A2 D159 of the CTE is dispensable for DNA binding but required for stable nucleosome association and persistent DNA ‘unwrapping’. These findings suggest that NR5A2 belongs to an emerging class of pioneer factors that can use DNA minor groove anchor competition to destabilize nucleosomes and facilitate gene expression during reprogramming.","lang":"eng"}],"volume":31,"publication_status":"published","author":[{"full_name":"Kobayashi, Wataru","last_name":"Kobayashi","first_name":"Wataru"},{"last_name":"Sappler","first_name":"Anna H.","full_name":"Sappler, Anna H."},{"full_name":"Bollschweiler, Daniel","first_name":"Daniel","last_name":"Bollschweiler"},{"first_name":"Maximilian","last_name":"Kümmecke","full_name":"Kümmecke, Maximilian"},{"full_name":"Basquin, Jérôme","first_name":"Jérôme","last_name":"Basquin"},{"first_name":"Eda Nur","last_name":"Arslantas","full_name":"Arslantas, Eda Nur","id":"36978b4e-2966-11ef-a72f-b3740ef1cd11"},{"full_name":"Ruangroengkulrith, Siwat","first_name":"Siwat","last_name":"Ruangroengkulrith"},{"full_name":"Hornberger, Renate","last_name":"Hornberger","first_name":"Renate"},{"full_name":"Duderstadt, Karl","first_name":"Karl","last_name":"Duderstadt"},{"full_name":"Tachibana, Kikuë","last_name":"Tachibana","first_name":"Kikuë"}],"_id":"18645","title":"Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition","OA_place":"publisher","publisher":"Springer Nature","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/s41594-024-01239-0"}],"citation":{"short":"W. Kobayashi, A.H. Sappler, D. Bollschweiler, M. Kümmecke, J. Basquin, E.N. Arslantas, S. Ruangroengkulrith, R. Hornberger, K. Duderstadt, K. Tachibana, Nature Structural &#38; Molecular Biology 31 (2024) 757–766.","ista":"Kobayashi W, Sappler AH, Bollschweiler D, Kümmecke M, Basquin J, Arslantas EN, Ruangroengkulrith S, Hornberger R, Duderstadt K, Tachibana K. 2024. Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition. Nature Structural &#38; Molecular Biology. 31, 757–766.","chicago":"Kobayashi, Wataru, Anna H. Sappler, Daniel Bollschweiler, Maximilian Kümmecke, Jérôme Basquin, Eda Nur Arslantas, Siwat Ruangroengkulrith, Renate Hornberger, Karl Duderstadt, and Kikuë Tachibana. “Nucleosome-Bound NR5A2 Structure Reveals Pioneer Factor Mechanism by DNA Minor Groove Anchor Competition.” <i>Nature Structural &#38; Molecular Biology</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41594-024-01239-0\">https://doi.org/10.1038/s41594-024-01239-0</a>.","ama":"Kobayashi W, Sappler AH, Bollschweiler D, et al. Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition. <i>Nature Structural &#38; Molecular Biology</i>. 2024;31:757-766. doi:<a href=\"https://doi.org/10.1038/s41594-024-01239-0\">10.1038/s41594-024-01239-0</a>","apa":"Kobayashi, W., Sappler, A. H., Bollschweiler, D., Kümmecke, M., Basquin, J., Arslantas, E. N., … Tachibana, K. (2024). Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition. <i>Nature Structural &#38; Molecular Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41594-024-01239-0\">https://doi.org/10.1038/s41594-024-01239-0</a>","mla":"Kobayashi, Wataru, et al. “Nucleosome-Bound NR5A2 Structure Reveals Pioneer Factor Mechanism by DNA Minor Groove Anchor Competition.” <i>Nature Structural &#38; Molecular Biology</i>, vol. 31, Springer Nature, 2024, pp. 757–66, doi:<a href=\"https://doi.org/10.1038/s41594-024-01239-0\">10.1038/s41594-024-01239-0</a>.","ieee":"W. Kobayashi <i>et al.</i>, “Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition,” <i>Nature Structural &#38; Molecular Biology</i>, vol. 31. Springer Nature, pp. 757–766, 2024."},"publication":"Nature Structural & Molecular Biology","day":"01","OA_type":"hybrid","date_updated":"2024-12-11T10:56:35Z","page":"757-766","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","status":"public","quality_controlled":"1","doi":"10.1038/s41594-024-01239-0","publication_identifier":{"eissn":["1545-9985"],"issn":["1545-9993"]},"article_processing_charge":"Yes (in subscription journal)","extern":"1","type":"journal_article"},{"day":"16","OA_type":"closed access","date_updated":"2025-09-09T11:51:15Z","_id":"18651","title":"Development: Turing mechanics","department":[{"_id":"CaHe"}],"publisher":"Elsevier","publication":"Current Biology","citation":{"short":"N. Hino, C. Santos Fernandes Lasbarrères Camelo, C.-P.J. Heisenberg, Current Biology 34 (2024) R1230–R1232.","chicago":"Hino, Naoya, Carolina Santos Fernandes Lasbarrères Camelo, and Carl-Philipp J Heisenberg. “Development: Turing Mechanics.” <i>Current Biology</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.cub.2024.10.065\">https://doi.org/10.1016/j.cub.2024.10.065</a>.","ista":"Hino N, Santos Fernandes Lasbarrères Camelo C, Heisenberg C-PJ. 2024. Development: Turing mechanics. Current Biology. 34(24), R1230–R1232.","ama":"Hino N, Santos Fernandes Lasbarrères Camelo C, Heisenberg C-PJ. Development: Turing mechanics. <i>Current Biology</i>. 2024;34(24):R1230-R1232. doi:<a href=\"https://doi.org/10.1016/j.cub.2024.10.065\">10.1016/j.cub.2024.10.065</a>","ieee":"N. Hino, C. Santos Fernandes Lasbarrères Camelo, and C.-P. J. Heisenberg, “Development: Turing mechanics,” <i>Current Biology</i>, vol. 34, no. 24. Elsevier, pp. R1230–R1232, 2024.","apa":"Hino, N., Santos Fernandes Lasbarrères Camelo, C., &#38; Heisenberg, C.-P. J. (2024). Development: Turing mechanics. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2024.10.065\">https://doi.org/10.1016/j.cub.2024.10.065</a>","mla":"Hino, Naoya, et al. “Development: Turing Mechanics.” <i>Current Biology</i>, vol. 34, no. 24, Elsevier, 2024, pp. R1230–32, doi:<a href=\"https://doi.org/10.1016/j.cub.2024.10.065\">10.1016/j.cub.2024.10.065</a>."},"article_processing_charge":"No","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","oa_version":"None","page":"R1230-R1232","status":"public","doi":"10.1016/j.cub.2024.10.065","publication_identifier":{"issn":["0960-9822"],"eissn":["1879-0445"]},"quality_controlled":"1","month":"12","abstract":[{"lang":"eng","text":"Embryo axis formation begins with the localized expression of biochemical signals, which organize cell movements and determine cell fate. A quail study finds that tissue contraction and resulting long-range changes in tissue tension restrict the area where these biochemical signals are expressed."}],"volume":34,"date_created":"2024-12-15T23:01:49Z","date_published":"2024-12-16T00:00:00Z","year":"2024","article_type":"letter_note","intvolume":"        34","issue":"24","isi":1,"language":[{"iso":"eng"}],"publication_status":"published","pmid":1,"external_id":{"isi":["001392077000001"],"pmid":["39689690"]},"corr_author":"1","author":[{"full_name":"Hino, Naoya","id":"5299a9ce-7679-11eb-a7bc-d1e62b936307","first_name":"Naoya","last_name":"Hino"},{"id":"6347dca5-074c-11ed-af92-a80f860d9d5b","full_name":"Santos Fernandes Lasbarrères Camelo, Carolina","last_name":"Santos Fernandes Lasbarrères Camelo","first_name":"Carolina"},{"full_name":"Heisenberg, Carl-Philipp J","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","last_name":"Heisenberg"}]},{"intvolume":"        21","language":[{"iso":"eng"}],"issue":"3-4","date_created":"2024-12-15T23:01:50Z","date_published":"2024-12-03T00:00:00Z","year":"2024","article_type":"original","volume":21,"month":"12","abstract":[{"text":"Over the last 70 years, information theory and coding has enabled communication technologies that have had an astounding impact on our lives. This is possible due to the match between encoding/decoding strategies and corresponding channel models. Traditional studies of channels have taken one of two extremes: Shannon-theoretic models are inherently average-case in which channel noise is governed by a memoryless stochastic process, whereas coding-theoretic (referred to as “Hamming”) models take a worst-case, adversarial, view of the noise. However, for several existing and emerging communication systems the Shannon/average-case view may be too optimistic, whereas the Hamming/worstcase view may be too pessimistic. This monograph takes up the challenge of studying adversarial channel models that lie between the Shannon and Hamming extremes.","lang":"eng"}],"author":[{"full_name":"Dey, Bikash Kumar","last_name":"Dey","first_name":"Bikash Kumar"},{"full_name":"Jaggi, Sidharth","first_name":"Sidharth","last_name":"Jaggi"},{"first_name":"Michael","last_name":"Langberg","full_name":"Langberg, Michael"},{"last_name":"Sarwate","first_name":"Anand D.","full_name":"Sarwate, Anand D."},{"first_name":"Yihan","last_name":"Zhang","full_name":"Zhang, Yihan","orcid":"0000-0002-6465-6258","id":"2ce5da42-b2ea-11eb-bba5-9f264e9d002c"}],"publication_status":"published","corr_author":"1","department":[{"_id":"MaMo"}],"publisher":"Now Publishers","publication":"Foundations and Trends in Communications and Information Theory","citation":{"chicago":"Dey, Bikash Kumar, Sidharth Jaggi, Michael Langberg, Anand D. Sarwate, and Yihan Zhang. “Codes for Adversaries: Between Worst-Case and Average-Case Jamming.” <i>Foundations and Trends in Communications and Information Theory</i>. Now Publishers, 2024. <a href=\"https://doi.org/10.1561/0100000112\">https://doi.org/10.1561/0100000112</a>.","ista":"Dey BK, Jaggi S, Langberg M, Sarwate AD, Zhang Y. 2024. Codes for adversaries: Between worst-case and average-case jamming. Foundations and Trends in Communications and Information Theory. 21(3–4), 300–588.","short":"B.K. Dey, S. Jaggi, M. Langberg, A.D. Sarwate, Y. Zhang, Foundations and Trends in Communications and Information Theory 21 (2024) 300–588.","ieee":"B. K. Dey, S. Jaggi, M. Langberg, A. D. Sarwate, and Y. Zhang, “Codes for adversaries: Between worst-case and average-case jamming,” <i>Foundations and Trends in Communications and Information Theory</i>, vol. 21, no. 3–4. Now Publishers, pp. 300–588, 2024.","mla":"Dey, Bikash Kumar, et al. “Codes for Adversaries: Between Worst-Case and Average-Case Jamming.” <i>Foundations and Trends in Communications and Information Theory</i>, vol. 21, no. 3–4, Now Publishers, 2024, pp. 300–588, doi:<a href=\"https://doi.org/10.1561/0100000112\">10.1561/0100000112</a>.","apa":"Dey, B. K., Jaggi, S., Langberg, M., Sarwate, A. D., &#38; Zhang, Y. (2024). Codes for adversaries: Between worst-case and average-case jamming. <i>Foundations and Trends in Communications and Information Theory</i>. Now Publishers. <a href=\"https://doi.org/10.1561/0100000112\">https://doi.org/10.1561/0100000112</a>","ama":"Dey BK, Jaggi S, Langberg M, Sarwate AD, Zhang Y. Codes for adversaries: Between worst-case and average-case jamming. <i>Foundations and Trends in Communications and Information Theory</i>. 2024;21(3-4):300-588. doi:<a href=\"https://doi.org/10.1561/0100000112\">10.1561/0100000112</a>"},"title":"Codes for adversaries: Between worst-case and average-case jamming","_id":"18652","OA_type":"closed access","date_updated":"2024-12-16T10:38:44Z","day":"03","status":"public","publication_identifier":{"eissn":["1567-2328"],"issn":["1567-2190"]},"doi":"10.1561/0100000112","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","oa_version":"None","page":"300-588","article_processing_charge":"No","type":"journal_article"},{"day":"01","date_updated":"2025-09-09T11:47:52Z","OA_type":"hybrid","OA_place":"publisher","_id":"18653","title":"Automated long-range compensation of an rf quantum dot sensor","citation":{"short":"J. Hickie, B. Van Straaten, F. Fedele, D. Jirovec, A. Ballabio, D. Chrastina, G. Isella, G. Katsaros, N. Ares, Physical Review Applied 22 (2024).","chicago":"Hickie, Joseph, Barnaby Van Straaten, Federico Fedele, Daniel Jirovec, Andrea Ballabio, Daniel Chrastina, Giovanni Isella, Georgios Katsaros, and Natalia Ares. “Automated Long-Range Compensation of an Rf Quantum Dot Sensor.” <i>Physical Review Applied</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevApplied.22.064026\">https://doi.org/10.1103/PhysRevApplied.22.064026</a>.","ista":"Hickie J, Van Straaten B, Fedele F, Jirovec D, Ballabio A, Chrastina D, Isella G, Katsaros G, Ares N. 2024. Automated long-range compensation of an rf quantum dot sensor. Physical Review Applied. 22(6), 064026.","ama":"Hickie J, Van Straaten B, Fedele F, et al. Automated long-range compensation of an rf quantum dot sensor. <i>Physical Review Applied</i>. 2024;22(6). doi:<a href=\"https://doi.org/10.1103/PhysRevApplied.22.064026\">10.1103/PhysRevApplied.22.064026</a>","ieee":"J. Hickie <i>et al.</i>, “Automated long-range compensation of an rf quantum dot sensor,” <i>Physical Review Applied</i>, vol. 22, no. 6. American Physical Society, 2024.","mla":"Hickie, Joseph, et al. “Automated Long-Range Compensation of an Rf Quantum Dot Sensor.” <i>Physical Review Applied</i>, vol. 22, no. 6, 064026, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevApplied.22.064026\">10.1103/PhysRevApplied.22.064026</a>.","apa":"Hickie, J., Van Straaten, B., Fedele, F., Jirovec, D., Ballabio, A., Chrastina, D., … Ares, N. (2024). Automated long-range compensation of an rf quantum dot sensor. <i>Physical Review Applied</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevApplied.22.064026\">https://doi.org/10.1103/PhysRevApplied.22.064026</a>"},"publication":"Physical Review Applied","has_accepted_license":"1","publisher":"American Physical Society","department":[{"_id":"GeKa"}],"file":[{"access_level":"open_access","date_created":"2024-12-16T11:13:48Z","relation":"main_file","content_type":"application/pdf","file_size":3560132,"creator":"dernst","checksum":"bc29a40819abc4969867b6cd6563f7ad","file_id":"18662","success":1,"date_updated":"2024-12-16T11:13:48Z","file_name":"2024_PhysicalReviewApplied_Hickie.pdf"}],"type":"journal_article","article_processing_charge":"No","ddc":["530"],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","oa_version":"Published Version","quality_controlled":"1","publication_identifier":{"eissn":["2331-7019"]},"doi":"10.1103/PhysRevApplied.22.064026","status":"public","abstract":[{"lang":"eng","text":"Charge sensing is a sensitive technique for probing quantum devices, of particular importance for spin-qubit readout. To achieve good readout sensitivities, the proximity of the charge sensor to the device to be measured is a necessity. However, this proximity also means that the operation of the device affects, in turn, the sensor tuning and ultimately the readout sensitivity. We present an approach for compensating for this crosstalk effect allowing for the gate voltages of the measured device to be swept in a 1-V × 1-V window while maintaining a sensor configuration chosen by a Bayesian optimizer. Our algorithm will hopefully be a major contribution to the suite of fully automated solutions required for the operation of large quantum device architectures."}],"acknowledged_ssus":[{"_id":"NanoFab"}],"month":"12","volume":22,"year":"2024","article_type":"original","file_date_updated":"2024-12-16T11:13:48Z","date_published":"2024-12-01T00:00:00Z","date_created":"2024-12-15T23:01:50Z","oa":1,"issue":"6","isi":1,"language":[{"iso":"eng"}],"acknowledgement":"We thank Nicholas Sim for providing help with the experiment and Sebastian Orbell for helpful discussions. This work was supported by the Royal Society, the Engineering and Physical Sciences Research Council (EPSRC) National Quantum Technology Hub in Networked Quantum Information Technology (Grant No. EP/M013243/1), Quantum Technology Capital (Grant No. EP/N014995/1), the EPSRC Platform Grant (Grant No. EP/R029229/1), the European Research Council (Grant Agreement No. 948932), the Scientific Service Units of the Institute of Science and Technology Austria through resources provided by the nanofabrication facility and, the FWF-I 05060 and HORIZON-RIA 101069515 projects.","intvolume":"        22","external_id":{"isi":["001379155900003"]},"article_number":"064026","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publication_status":"published","author":[{"last_name":"Hickie","first_name":"Joseph","full_name":"Hickie, Joseph"},{"full_name":"Van Straaten, Barnaby","last_name":"Van Straaten","first_name":"Barnaby"},{"first_name":"Federico","last_name":"Fedele","full_name":"Fedele, Federico"},{"id":"4C473F58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7197-4801","full_name":"Jirovec, Daniel","last_name":"Jirovec","first_name":"Daniel"},{"full_name":"Ballabio, Andrea","last_name":"Ballabio","first_name":"Andrea"},{"full_name":"Chrastina, Daniel","last_name":"Chrastina","first_name":"Daniel"},{"last_name":"Isella","first_name":"Giovanni","full_name":"Isella, Giovanni"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8342-202X","full_name":"Katsaros, Georgios","last_name":"Katsaros","first_name":"Georgios"},{"last_name":"Ares","first_name":"Natalia","full_name":"Ares, Natalia"}],"project":[{"grant_number":"I05060","name":"High impedance circuit quantum electrodynamics with hole spins","_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1"},{"_id":"34c0acea-11ca-11ed-8bc3-8775e10fd452","name":"Integrated Germanium Quantum Technology","grant_number":"101069515"}]},{"volume":110,"abstract":[{"lang":"eng","text":"We compute the rotational anisotropy of the free energy of 𝛼−RuCl3 in an external magnetic field. This quantity, known as the magnetotropic susceptibility, 𝑘, relates to the second derivative of the free energy with respect to the angle of rotation. We have used approximation-free, auxiliary-field quantum Monte Carlo simulations for a realistic model of 𝛼−RuCl3 and optimized the path integral to alleviate the negative sign problem. This allows us to reach temperatures down to 30K—an energy scale below the dominant Kitaev coupling. We demonstrate that the magnetotropic spin susceptibility in this model of 𝛼−RuCl3 displays scaling behavior 𝑘=𝑇⁢𝑓⁡(𝐵/𝑇) at high temperatures. Once the uniform susceptibility departs from the Curie law (i.e., at the energy scale of the exchange interactions), it appears to transition to an emergent scalinglike behavior, characterized by a different function 𝑓 at lower temperatures, stemming from the locality of torque fluctuations. We observe a remarkable numerical match between experiment and simulations and we also find qualitative agreement with the pure Kitaev model. In comparison, for the XXZ Heisenberg Hamiltonian, the scaling 𝑘=𝑇⁢𝑓⁡(𝐵/𝑇) breaks down at a temperature scale where the uniform spin susceptibility deviates from the Curie law and never reemerges at low temperatures."}],"month":"11","issue":"20","isi":1,"acknowledgement":"We gratefully acknowledge the Gauss Centre for Supercomputing e.V. for funding this project by providing computing time on the GCS Supercomputer SUPERMUC-NG at the Leibniz Supercomputing Centre (Project No. pn73xu) as well as the scientific support and HPC resources provided by the Erlangen National High Performance Computing Center (NHR@FAU) of the Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU) under the NHR Project b133ae. NHR funding is provided by federal and Bavarian state authorities. NHR@FAU hardware is partially funded by the German Research Foundation (DFG) – 440719683. T.S. thanks funding from the Deutsche Forschungsgemeinschaft under Grant No. SA 3986/1-1 as well as the Würzburg-Dresden Cluster of Excellence on Complexity and Topology in Quantum Matter ct.qmat (EXC 2147, Project ID 390858490). F.F.A. acknowledges financial support from the German Research Foundation (DFG) under the Grant AS 120/16-1 (Project No. 493886309) that is part of the collaborative research project SFB Q-M&S funded by the Austrian Science Fund (FWF) F 86. K.A.M. thanks financial support from the Austrian Science Fund, SFB F 86, Q-M&S.","oa":1,"language":[{"iso":"eng"}],"intvolume":"       110","year":"2024","article_type":"letter_note","date_published":"2024-11-15T00:00:00Z","date_created":"2024-12-15T23:01:50Z","author":[{"first_name":"Toshihiro","last_name":"Sato","full_name":"Sato, Toshihiro"},{"full_name":"Ramshaw, B. J.","last_name":"Ramshaw","first_name":"B. J."},{"id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","orcid":"0000-0001-9760-3147","full_name":"Modic, Kimberly A","last_name":"Modic","first_name":"Kimberly A"},{"first_name":"Fakher F.","last_name":"Assaad","full_name":"Assaad, Fakher F."}],"external_id":{"isi":["001447562900001"],"arxiv":["2312.03080"]},"article_number":"L201114","publication_status":"published","project":[{"name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Scale- invariance in entangled quantum spin systems","grant_number":"F8607","_id":"34ac8b51-11ca-11ed-8bc3-86c15daa9f8f"}],"date_updated":"2025-09-09T11:48:35Z","OA_type":"green","day":"15","citation":{"short":"T. Sato, B.J. Ramshaw, K.A. Modic, F.F. Assaad, Physical Review B 110 (2024).","ista":"Sato T, Ramshaw BJ, Modic KA, Assaad FF. 2024. Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study. Physical Review B. 110(20), L201114.","chicago":"Sato, Toshihiro, B. J. Ramshaw, Kimberly A Modic, and Fakher F. Assaad. “Scale-Invariant Magnetic Anisotropy in α-RuCl3: A Quantum Monte Carlo Study.” <i>Physical Review B</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevB.110.L201114\">https://doi.org/10.1103/PhysRevB.110.L201114</a>.","ama":"Sato T, Ramshaw BJ, Modic KA, Assaad FF. Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study. <i>Physical Review B</i>. 2024;110(20). doi:<a href=\"https://doi.org/10.1103/PhysRevB.110.L201114\">10.1103/PhysRevB.110.L201114</a>","apa":"Sato, T., Ramshaw, B. J., Modic, K. A., &#38; Assaad, F. F. (2024). Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.110.L201114\">https://doi.org/10.1103/PhysRevB.110.L201114</a>","mla":"Sato, Toshihiro, et al. “Scale-Invariant Magnetic Anisotropy in α-RuCl3: A Quantum Monte Carlo Study.” <i>Physical Review B</i>, vol. 110, no. 20, L201114, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevB.110.L201114\">10.1103/PhysRevB.110.L201114</a>.","ieee":"T. Sato, B. J. Ramshaw, K. A. Modic, and F. F. Assaad, “Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study,” <i>Physical Review B</i>, vol. 110, no. 20. American Physical Society, 2024."},"publication":"Physical Review B","publisher":"American Physical Society","department":[{"_id":"KiMo"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2312.03080","open_access":"1"}],"OA_place":"repository","_id":"18654","title":"Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study","type":"journal_article","article_processing_charge":"No","arxiv":1,"quality_controlled":"1","doi":"10.1103/PhysRevB.110.L201114","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"status":"public","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Preprint"},{"citation":{"short":"M. Anastos, S. Diskin, D. Elboim, M. Krivelevich, Electronic Communications in Probability 29 (2024).","ista":"Anastos M, Diskin S, Elboim D, Krivelevich M. 2024. Climbing up a random subgraph of the hypercube. Electronic Communications in Probability. 29, 70.","chicago":"Anastos, Michael, Sahar Diskin, Dor Elboim, and Michael Krivelevich. “Climbing up a Random Subgraph of the Hypercube.” <i>Electronic Communications in Probability</i>. Duke University Press, 2024. <a href=\"https://doi.org/10.1214/24-ECP639\">https://doi.org/10.1214/24-ECP639</a>.","ama":"Anastos M, Diskin S, Elboim D, Krivelevich M. Climbing up a random subgraph of the hypercube. <i>Electronic Communications in Probability</i>. 2024;29. doi:<a href=\"https://doi.org/10.1214/24-ECP639\">10.1214/24-ECP639</a>","mla":"Anastos, Michael, et al. “Climbing up a Random Subgraph of the Hypercube.” <i>Electronic Communications in Probability</i>, vol. 29, 70, Duke University Press, 2024, doi:<a href=\"https://doi.org/10.1214/24-ECP639\">10.1214/24-ECP639</a>.","apa":"Anastos, M., Diskin, S., Elboim, D., &#38; Krivelevich, M. (2024). Climbing up a random subgraph of the hypercube. <i>Electronic Communications in Probability</i>. Duke University Press. <a href=\"https://doi.org/10.1214/24-ECP639\">https://doi.org/10.1214/24-ECP639</a>","ieee":"M. Anastos, S. Diskin, D. Elboim, and M. Krivelevich, “Climbing up a random subgraph of the hypercube,” <i>Electronic Communications in Probability</i>, vol. 29. Duke University Press, 2024."},"publication":"Electronic Communications in Probability","has_accepted_license":"1","publisher":"Duke University Press","department":[{"_id":"MaKw"}],"file":[{"success":1,"file_id":"18657","checksum":"307a9d049325e6ca9bfe8b4a1f275983","file_name":"2024_ElectrCommProbability_Anastos.pdf","date_updated":"2024-12-16T07:33:34Z","date_created":"2024-12-16T07:33:34Z","relation":"main_file","access_level":"open_access","creator":"dernst","file_size":530169,"content_type":"application/pdf"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2311.16631","open_access":"1"}],"OA_place":"repository","title":"Climbing up a random subgraph of the hypercube","_id":"18655","date_updated":"2025-09-09T11:46:53Z","OA_type":"gold","day":"24","quality_controlled":"1","publication_identifier":{"eissn":["1083-589X"]},"doi":"10.1214/24-ECP639","status":"public","ec_funded":1,"oa_version":"Published Version","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","ddc":["510"],"type":"journal_article","article_processing_charge":"Yes","arxiv":1,"language":[{"iso":"eng"}],"acknowledgement":"Research supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034413.\r\nThe authors wish to thank Ross Pinsky for his comments on an earlier version of the paper, and for bringing reference [12] to our attention. The authors are grateful to the anonymous referees for their helpful comments and suggestions.","oa":1,"isi":1,"intvolume":"        29","article_type":"original","year":"2024","date_published":"2024-11-24T00:00:00Z","file_date_updated":"2024-12-16T07:33:34Z","date_created":"2024-12-15T23:01:51Z","volume":29,"abstract":[{"text":"Let Qd be the d-dimensional binary hypercube. We say that P={v1,…,vk} is an increasing path of length k−1 in Qd, if for every i∈[k−1] the edge vivi+1 is obtained by switching some zero coordinate in vi to a one coordinate in vi+1.\r\nForm a random subgraph Qdp by retaining each edge in E(Qd) independently with probability p. We show that there is a phase transition with respect to the length of a longest increasing path around p=ed. Let α be a constant and let p=αd. When α<e, then there exists a δ∈[0,1) such that whp a longest increasing path in Qdp is of length at most δd. On the other hand, when α>e, whp there is a path of length d−2 in Qdp, and in fact, whether it is of length d−2,d−1, or d depends on whether the all-zero and all-one vertices percolate or not.","lang":"eng"}],"month":"11","DOAJ_listed":"1","project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"author":[{"last_name":"Anastos","first_name":"Michael","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb","full_name":"Anastos, Michael"},{"full_name":"Diskin, Sahar","first_name":"Sahar","last_name":"Diskin"},{"full_name":"Elboim, Dor","first_name":"Dor","last_name":"Elboim"},{"last_name":"Krivelevich","first_name":"Michael","full_name":"Krivelevich, Michael"}],"corr_author":"1","external_id":{"arxiv":["2311.16631"],"isi":["001356019700001"]},"article_number":"70","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publication_status":"published"},{"day":"30","OA_type":"green","date_updated":"2026-04-07T12:37:10Z","title":"Out-of-time-ordered correlators for Wigner matrices","_id":"18656","OA_place":"repository","department":[{"_id":"LaEr"}],"publisher":"International Press","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2402.17609","open_access":"1"}],"citation":{"ama":"Cipolloni G, Erdös L, Henheik SJ. Out-of-time-ordered correlators for Wigner matrices. <i>Advances in Theoretical and Mathematical Physics</i>. 2024;28(6):2025-2083. doi:<a href=\"https://doi.org/10.4310/ATMP.241031013250\">10.4310/ATMP.241031013250</a>","mla":"Cipolloni, Giorgio, et al. “Out-of-Time-Ordered Correlators for Wigner Matrices.” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 28, no. 6, International Press, 2024, pp. 2025–83, doi:<a href=\"https://doi.org/10.4310/ATMP.241031013250\">10.4310/ATMP.241031013250</a>.","apa":"Cipolloni, G., Erdös, L., &#38; Henheik, S. J. (2024). Out-of-time-ordered correlators for Wigner matrices. <i>Advances in Theoretical and Mathematical Physics</i>. International Press. <a href=\"https://doi.org/10.4310/ATMP.241031013250\">https://doi.org/10.4310/ATMP.241031013250</a>","ieee":"G. Cipolloni, L. Erdös, and S. J. Henheik, “Out-of-time-ordered correlators for Wigner matrices,” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 28, no. 6. International Press, pp. 2025–2083, 2024.","short":"G. Cipolloni, L. Erdös, S.J. Henheik, Advances in Theoretical and Mathematical Physics 28 (2024) 2025–2083.","ista":"Cipolloni G, Erdös L, Henheik SJ. 2024. Out-of-time-ordered correlators for Wigner matrices. Advances in Theoretical and Mathematical Physics. 28(6), 2025–2083.","chicago":"Cipolloni, Giorgio, László Erdös, and Sven Joscha Henheik. “Out-of-Time-Ordered Correlators for Wigner Matrices.” <i>Advances in Theoretical and Mathematical Physics</i>. International Press, 2024. <a href=\"https://doi.org/10.4310/ATMP.241031013250\">https://doi.org/10.4310/ATMP.241031013250</a>."},"publication":"Advances in Theoretical and Mathematical Physics","article_processing_charge":"No","arxiv":1,"type":"journal_article","related_material":{"record":[{"relation":"dissertation_contains","id":"19540","status":"public"}]},"page":"2025-2083","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","status":"public","ec_funded":1,"quality_controlled":"1","publication_identifier":{"eissn":["1095-0753"],"issn":["1095-0761"]},"doi":"10.4310/ATMP.241031013250","month":"10","abstract":[{"lang":"eng","text":"We consider the time evolution of the out-of-time-ordered correlator (OTOC) of two general observables \r\n and \r\n in a mean field chaotic quantum system described by a random Wigner matrix as its Hamiltonian. We rigorously identify three time regimes separated by the physically relevant scrambling and relaxation times. The main feature of our analysis is that we express the error terms in the optimal Schatten (tracial) norms of the observables, allowing us to track the exact dependence of the errors on their rank. In particular, for significantly overlapping observables with low rank the OTOC is shown to exhibit a significant local maximum at the scrambling time, a feature that may not have been noticed in the physics literature before. Our main tool is a novel multi-resolvent local law with Schatten norms that unifies and improves previous local laws involving either the much cruder operator norm (cf. [10]) or the Hilbert-Schmidt norm (cf. [11])."}],"volume":28,"date_created":"2024-12-15T23:01:51Z","year":"2024","article_type":"original","date_published":"2024-10-30T00:00:00Z","intvolume":"        28","issue":"6","oa":1,"acknowledgement":"LE and JH were supported by the ERC Advanced Grant łRMTBeyondž No. 101020331","language":[{"iso":"eng"}],"publication_status":"published","corr_author":"1","external_id":{"arxiv":["2402.17609"]},"author":[{"first_name":"Giorgio","last_name":"Cipolloni","full_name":"Cipolloni, Giorgio","orcid":"0000-0002-4901-7992","id":"42198EFA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"László","last_name":"Erdös","orcid":"0000-0001-5366-9603","full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Henheik","first_name":"Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","full_name":"Henheik, Sven Joscha","orcid":"0000-0003-1106-327X"}],"project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"}]},{"author":[{"id":"4879BB4E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1780-2689","full_name":"Heiss, Teresa","last_name":"Heiss","first_name":"Teresa"}],"publication_status":"published","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"corr_author":"1","project":[{"name":"Alpha Shape Theory Extended","call_identifier":"H2020","grant_number":"788183","_id":"266A2E9E-B435-11E9-9278-68D0E5697425"}],"month":"12","abstract":[{"text":"Many chemical and physical properties of materials are determined by the material’s shape,\r\nfor example the size of its pores and the width of its tunnels. This makes materials science\r\na prime application area for geometrical and topological methods. Nevertheless many\r\nmethods in topological data analysis have not been satisfyingly extended to the needs of\r\nmaterials science. This thesis provides new methods and new mathematical theorems\r\ntargeted at those specific needs by answering four different research questions. While the\r\nmotivation for each of the research questions arises from materials science, the methods\r\nare versatile and can be applied in different areas as well. \r\n\r\nThe first research question is concerned with image data, for example a three-dimensional\r\ncomputed tomography (CT) scan of a material, like sand or stone. There are two commonly\r\nused topologies for digital images and depending on the application either of them might be\r\nrequired. However, software for computing the topological data analysis method persistence\r\nhomology, usually supports only one of the two topologies. We answer the question how to\r\ncompute persistent homology of an image with respect to one of the two topologies using\r\nsoftware that is intended for the other topology. \r\n\r\nThe second research question is concerned with image data as well, and asks how much\r\nof the topological information of an image is lost when the resolution is coarsened. As\r\ncomputer tomography scanners are more expensive the higher the resolution, it is an\r\nimportant question in materials science to know which resolution is enough to get satisfying\r\npersistent homology. We give theoretical bounds on the information loss based on different\r\ngeometrical properties of the object to be scanned. In addition, we conduct experiments on\r\nsand and stone CT image data. \r\n\r\nThe third research question is motivated by comparing crystalline materials efficiently. As\r\nthe atoms within a crystal repeat periodically, crystalline materials are either modeled by\r\nunmanageable infinite periodic point sets, or by one of their fundamental domains, which is\r\nunstable under perturbation. Therefore a fingerprint of crystalline materials is needed, with\r\nappropriate properties such that comparing the crystals can be eased by comparing the\r\nfingerprints instead. We define the density fingerprint and prove the necessary properties. \r\n\r\nThe fourth research question is motivated by studying the hole-structure or connectedness,\r\ni.e. persistent homology or merge trees, of crystalline materials. A common way to deal\r\nwith periodicity is to take a fundamental domain and identify opposite boundaries to form a\r\ntorus. However, computing persistent homology or merge trees on that torus loses some\r\nof the information materials scientists are interested in and is additionally not stable under\r\ncertain noise. We therefore decorate the merge tree stemming from the torus with additional\r\ninformation describing the density and growth rate of the periodic copies of a component\r\nwithin a growing spherical window. We prove all desired properties, like stability and efficient\r\ncomputability.","lang":"eng"}],"oa":1,"language":[{"iso":"eng"}],"acknowledgement":"I was supported by the European Research Council (ERC) Horizon 2020 project\r\n“Alpha Shape Theory Extended” No. 788183 and by the Pöttinger Scholarship. In addition,\r\nI am very thankful for having been able to attend the second Workshop for Women in\r\nComputational Topology in July 2019, funded by the Mathematical Sciences Institute at\r\nANU, the US National Science Foundation through the award CCF-1841455, the Australian\r\nMathematical Sciences Institute and the Association for Women in Mathematics. Two of the\r\nprojects presented in this thesis started there. One of them reached completion thanks to\r\nfunding from the MSRI Summer Research in Mathematics program awarded to me and my\r\ncollaborators in 2020.","date_created":"2024-12-17T16:17:55Z","date_published":"2024-12-17T00:00:00Z","file_date_updated":"2024-12-19T10:24:50Z","year":"2024","ddc":["514","516","004"],"degree_awarded":"PhD","article_processing_charge":"No","type":"dissertation","ec_funded":1,"status":"public","publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-052-7"]},"doi":"10.15479/at:ista:18667","oa_version":"Published Version","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","related_material":{"record":[{"relation":"part_of_dissertation","id":"10828","status":"public"},{"status":"public","id":"11440","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"18673","status":"public"},{"status":"public","id":"9345","relation":"part_of_dissertation"}]},"page":"111","date_updated":"2026-04-07T12:54:10Z","day":"17","alternative_title":["ISTA Thesis"],"file":[{"file_size":7752253,"content_type":"application/pdf","creator":"theiss","access_level":"open_access","relation":"main_file","date_created":"2024-12-19T10:24:46Z","date_updated":"2024-12-19T10:24:46Z","file_name":"Teresa_Heiss_PhD_Thesis_final.pdf","file_id":"18686","checksum":"247bb057aed2fba1cd4711917aaa2d77","success":1},{"checksum":"9648b45c07a008ee11a07f99856a139d","file_id":"18687","file_name":"PhD_Thesis.zip","date_updated":"2024-12-19T10:24:50Z","relation":"source_file","date_created":"2024-12-19T10:24:50Z","access_level":"closed","creator":"theiss","file_size":17197731,"content_type":"application/zip"}],"publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"HeEd"}],"has_accepted_license":"1","keyword":["persistent homology","topological data analysis","periodic","crystalline materials","images","fingerprint"],"citation":{"short":"T. Heiss, New Methods for Applying Topological Data Analysis to Materials Science, Institute of Science and Technology Austria, 2024.","chicago":"Heiss, Teresa. “New Methods for Applying Topological Data Analysis to Materials Science.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:18667\">https://doi.org/10.15479/at:ista:18667</a>.","ista":"Heiss T. 2024. New methods for applying topological data analysis to materials science. Institute of Science and Technology Austria.","ama":"Heiss T. New methods for applying topological data analysis to materials science. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:18667\">10.15479/at:ista:18667</a>","ieee":"T. Heiss, “New methods for applying topological data analysis to materials science,” Institute of Science and Technology Austria, 2024.","mla":"Heiss, Teresa. <i>New Methods for Applying Topological Data Analysis to Materials Science</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:18667\">10.15479/at:ista:18667</a>.","apa":"Heiss, T. (2024). <i>New methods for applying topological data analysis to materials science</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:18667\">https://doi.org/10.15479/at:ista:18667</a>"},"_id":"18667","title":"New methods for applying topological data analysis to materials science","OA_place":"publisher","supervisor":[{"id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","first_name":"Herbert"}]},{"date_updated":"2026-04-07T12:54:09Z","day":"29","citation":{"ista":"Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. arXiv, <a href=\"https://doi.org/10.48550/arXiv.2408.16575\">10.48550/arXiv.2408.16575</a>.","chicago":"Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.2408.16575\">https://doi.org/10.48550/arXiv.2408.16575</a>.","short":"H. Edelsbrunner, T. Heiss, ArXiv (n.d.).","mla":"Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.” <i>ArXiv</i>, doi:<a href=\"https://doi.org/10.48550/arXiv.2408.16575\">10.48550/arXiv.2408.16575</a>.","apa":"Edelsbrunner, H., &#38; Heiss, T. (n.d.). Merge trees of periodic filtrations. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2408.16575\">https://doi.org/10.48550/arXiv.2408.16575</a>","ieee":"H. Edelsbrunner and T. Heiss, “Merge trees of periodic filtrations,” <i>arXiv</i>. .","ama":"Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.2408.16575\">10.48550/arXiv.2408.16575</a>"},"publication":"arXiv","department":[{"_id":"HeEd"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2408.16575","open_access":"1"}],"OA_place":"repository","title":"Merge trees of periodic filtrations","_id":"18673","type":"preprint","arxiv":1,"article_processing_charge":"No","doi":"10.48550/arXiv.2408.16575","status":"public","ec_funded":1,"related_material":{"record":[{"id":"18667","relation":"dissertation_contains","status":"public"}]},"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Motivated by applications to crystalline materials, we generalize the merge tree and the related barcode of a filtered complex to the periodic setting in Euclidean space. They are invariant under isometries, changing bases, and indeed changing lattices. In addition, we prove stability under perturbations and provide an algorithm that under mild geometric conditions typically satisfied by crystalline materials takes O((n+m)logn) time, in which n and m are the numbers of vertices and edges in the quotient complex, respectively.\r\n"}],"month":"08","language":[{"iso":"eng"}],"oa":1,"acknowledgement":"Both authors are partially supported by the European Research Council (ERC) Horizon 2020 project\r\n‘Alpha Shape Theory Extended’, grant no. 788183. The first author is also partially supported by the DFG\r\nCollaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund\r\n(FWF), grant no. I 02979-N35.","year":"2024","date_published":"2024-08-29T00:00:00Z","date_created":"2024-12-18T14:06:57Z","author":[{"last_name":"Edelsbrunner","first_name":"Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert"},{"id":"4879BB4E-F248-11E8-B48F-1D18A9856A87","full_name":"Heiss, Teresa","orcid":"0000-0002-1780-2689","last_name":"Heiss","first_name":"Teresa"}],"corr_author":"1","external_id":{"arxiv":["2408.16575"]},"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publication_status":"draft","project":[{"grant_number":"788183","call_identifier":"H2020","name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425"},{"_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes","grant_number":"I02979-N35","call_identifier":"FWF"}]}]