---
_id: '15253'
abstract:
- lang: eng
text: "We study the problem of maintaining a differentially private decaying sum
under continual observation. We give a unifying framework and an efficient algorithm
for this problem for any sufficiently smooth function. Our algorithm is the first
differentially private algorithm that does not have a multiplicative error for
polynomially decaying weights. Our algorithm improves on all prior works on differentially
private decaying sums under continual observation and recovers exactly the additive
error for the special case of continual counting from Henzinger et al. (SODA 2023)
as a corollary.\r\nOur algorithm is a variant of the matrix mechanism whose error
depends on the γ2 and γF norm of the underlying matrix. We give a constructive
proof for an almost exact upper bound on the γ2 and γF norm and an almost tight
lower bound on the γ2 norm for a large class of lower-triangular matrices. This
is the first non-trivial lower bound for lower-triangular matrices whose non-zero
entries are not all the same. It includes matrices for all continual decaying
sums problems, resulting in an upper bound on the additive error of any differentially
private decaying sums algorithm under continual observation.\r\nWe also explore
some implications of our result in discrepancy theory and operator algebra. Given
the importance of the γ2 norm in computer science and the extensive work in mathematics,
we believe our result will have further applications."
acknowledgement: This project has received funding from the European Research Council (ERC)under
the European Union’s Horizon 2020 research and innovation programme (Grant agreement
No.101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)”
and the AustrianScience Fund (FWF) project Z 422-N, project “Static and Dynamic
Hierarchical Graph Decompositions”, I 5982-N, andproject “Fast Algorithms for a
Reactive Network Layer (ReactNet)”, P 33775-N, with additional funding from the
netideeSCIENCE Stiftung, 2020–2024. JU’s research was funded by the Decanal Research Grant. We thank the anonymousreviewers
for their useful feedback and pointing us to the results in Matousek et al
article_processing_charge: No
arxiv: 1
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Jalaj
full_name: Upadhyay, Jalaj
last_name: Upadhyay
- first_name: Sarvagya
full_name: Upadhyay, Sarvagya
last_name: Upadhyay
citation:
ama: 'Henzinger M, Upadhyay J, Upadhyay S. A unifying framework for differentially
private sums under continual observation. In: Proceedings of the 2024 Annual
ACM-SIAM Symposium on Discrete Algorithms. Vol 2024. Society for Industrial
and Applied Mathematics; 2024:995-1018. doi:10.1137/1.9781611977912.38'
apa: 'Henzinger, M., Upadhyay, J., & Upadhyay, S. (2024). A unifying framework
for differentially private sums under continual observation. In Proceedings
of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms (Vol. 2024, pp.
995–1018). Alexandria, VA, United States: Society for Industrial and Applied Mathematics.
https://doi.org/10.1137/1.9781611977912.38'
chicago: Henzinger, Monika, Jalaj Upadhyay, and Sarvagya Upadhyay. “A Unifying Framework
for Differentially Private Sums under Continual Observation.” In Proceedings
of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms, 2024:995–1018.
Society for Industrial and Applied Mathematics, 2024. https://doi.org/10.1137/1.9781611977912.38.
ieee: M. Henzinger, J. Upadhyay, and S. Upadhyay, “A unifying framework for differentially
private sums under continual observation,” in Proceedings of the 2024 Annual
ACM-SIAM Symposium on Discrete Algorithms, Alexandria, VA, United States,
2024, vol. 2024, pp. 995–1018.
ista: 'Henzinger M, Upadhyay J, Upadhyay S. 2024. A unifying framework for differentially
private sums under continual observation. Proceedings of the 2024 Annual ACM-SIAM
Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms vol.
2024, 995–1018.'
mla: Henzinger, Monika, et al. “A Unifying Framework for Differentially Private
Sums under Continual Observation.” Proceedings of the 2024 Annual ACM-SIAM
Symposium on Discrete Algorithms, vol. 2024, Society for Industrial and Applied
Mathematics, 2024, pp. 995–1018, doi:10.1137/1.9781611977912.38.
short: M. Henzinger, J. Upadhyay, S. Upadhyay, in:, Proceedings of the 2024 Annual
ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied
Mathematics, 2024, pp. 995–1018.
conference:
end_date: 2024-01-10
location: Alexandria, VA, United States
name: 'SODA: Symposium on Discrete Algorithms'
start_date: 2024-01-07
corr_author: '1'
date_created: 2024-03-31T22:01:13Z
date_published: 2024-01-04T00:00:00Z
date_updated: 2025-04-14T13:50:49Z
day: '04'
department:
- _id: MoHe
doi: 10.1137/1.9781611977912.38
ec_funded: 1
external_id:
arxiv:
- '2307.08970'
intvolume: ' 2024'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2307.08970
month: '01'
oa: 1
oa_version: Preprint
page: 995-1018
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
call_identifier: H2020
grant_number: '101019564'
name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
grant_number: Z00422
name: Efficient algorithms
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
grant_number: I05982
name: Static and Dynamic Hierarchical Graph Decompositions
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
grant_number: P33775
name: Fast Algorithms for a Reactive Network Layer
publication: Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms
publication_identifier:
eisbn:
- '9781611977912'
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: A unifying framework for differentially private sums under continual observation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2024
year: '2024'
...
---
DOAJ_listed: '1'
_id: '15257'
abstract:
- lang: eng
text: Root gravitropic bending represents a fundamental aspect of terrestrial plant
physiology. Gravity is perceived by sedimentation of starch-rich plastids (statoliths)
to the bottom of the central root cap cells. Following gravity perception, intercellular
auxin transport is redirected downwards leading to an asymmetric auxin accumulation
at the lower root side causing inhibition of cell expansion, ultimately resulting
in downwards bending. How gravity-induced statoliths repositioning is translated
into asymmetric auxin distribution remains unclear despite PIN auxin efflux carriers
and the Negative Gravitropic Response of roots (NGR) proteins polarize along statolith
sedimentation, thus providing a plausible mechanism for auxin flow redirection.
In this study, using a functional NGR1-GFP construct, we visualized the NGR1 localization
on the statolith surface and plasma membrane (PM) domains in close proximity to
the statoliths, correlating with their movements. We determined that NGR1 binding
to these PM domains is indispensable for NGR1 functionality and relies on cysteine
acylation and adjacent polybasic regions as well as on lipid and sterol PM composition.
Detailed timing of the early events following graviperception suggested that both
NGR1 repolarization and initial auxin asymmetry precede the visible PIN3 polarization.
This discrepancy motivated us to unveil a rapid, NGR-dependent translocation of
PIN-activating AGCVIII kinase D6PK towards lower PMs of gravity-perceiving cells,
thus providing an attractive model for rapid redirection of auxin fluxes following
gravistimulation.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
acknowledgement: 'The research leading to these results has received funding from
the European Research Council (ERC) under the European Union’s Horizon 2020 research
and innovation programme grant agreement No 742985 and Austrian Science Fund (FWF):
I3630-775 B25 to J.F. This research was also supported by the Lab Support Facility
(LSF) and the Imaging and Optics Facility (IOF) of IST Austria, namely Tereza Bělinová
for her help with the imaging. JS was supported by FemTECH fellowship.'
article_number: '91523'
article_processing_charge: Yes
article_type: original
author:
- first_name: Ivan
full_name: Kulich, Ivan
id: 57a1567c-8314-11eb-9063-c9ddc3451a54
last_name: Kulich
- first_name: Julia
full_name: Schmid, Julia
id: 07cf4637-baaf-11ee-9227-e1de57d1d69b
last_name: Schmid
- first_name: Anastasiia
full_name: Teplova, Anastasiia
id: e3736151-106c-11ec-b916-c2558e2762c6
last_name: Teplova
- first_name: Linlin
full_name: Qi, Linlin
id: 44B04502-A9ED-11E9-B6FC-583AE6697425
last_name: Qi
orcid: 0000-0001-5187-8401
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Kulich I, Schmid J, Teplova A, Qi L, Friml J. Rapid translocation of NGR proteins
driving polarization of PIN-activating D6 protein kinase during root gravitropism.
eLife. 2024;12. doi:10.7554/elife.91523
apa: Kulich, I., Schmid, J., Teplova, A., Qi, L., & Friml, J. (2024). Rapid
translocation of NGR proteins driving polarization of PIN-activating D6 protein
kinase during root gravitropism. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.91523
chicago: Kulich, Ivan, Julia Schmid, Anastasiia Teplova, Linlin Qi, and Jiří Friml.
“Rapid Translocation of NGR Proteins Driving Polarization of PIN-Activating D6
Protein Kinase during Root Gravitropism.” ELife. eLife Sciences Publications,
2024. https://doi.org/10.7554/elife.91523.
ieee: I. Kulich, J. Schmid, A. Teplova, L. Qi, and J. Friml, “Rapid translocation
of NGR proteins driving polarization of PIN-activating D6 protein kinase during
root gravitropism,” eLife, vol. 12. eLife Sciences Publications, 2024.
ista: Kulich I, Schmid J, Teplova A, Qi L, Friml J. 2024. Rapid translocation of
NGR proteins driving polarization of PIN-activating D6 protein kinase during root
gravitropism. eLife. 12, 91523.
mla: Kulich, Ivan, et al. “Rapid Translocation of NGR Proteins Driving Polarization
of PIN-Activating D6 Protein Kinase during Root Gravitropism.” ELife, vol.
12, 91523, eLife Sciences Publications, 2024, doi:10.7554/elife.91523.
short: I. Kulich, J. Schmid, A. Teplova, L. Qi, J. Friml, ELife 12 (2024).
corr_author: '1'
date_created: 2024-04-02T11:35:58Z
date_published: 2024-03-05T00:00:00Z
date_updated: 2025-04-23T07:45:02Z
day: '05'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.7554/elife.91523
ec_funded: 1
external_id:
pmid:
- '38441122'
file:
- access_level: open_access
checksum: a73a84d3bf97a6d09d24308ca6dd0a0c
content_type: application/pdf
creator: dernst
date_created: 2024-04-03T13:18:00Z
date_updated: 2024-04-03T13:18:00Z
file_id: '15288'
file_name: 2024_eLife_Kulich.pdf
file_size: 11451904
relation: main_file
success: 1
file_date_updated: 2024-04-03T13:18:00Z
has_accepted_license: '1'
intvolume: ' 12'
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Medicine
- General Neuroscience
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
publication: eLife
publication_identifier:
issn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/beneath-the-surface/
scopus_import: '1'
status: public
title: Rapid translocation of NGR proteins driving polarization of PIN-activating
D6 protein kinase during root gravitropism
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '15258'
abstract:
- lang: eng
text: Inclusion at academic events is facing increased scrutiny as the communities
these events serve raise their expectations for who can practically attend. Active
efforts in recent years to bring more diversity to academic events have brought
progress and created momentum. However, we must reflect on these efforts and determine
which underrepresented groups are being disadvantaged. Inclusion at academic events
is important to ensure diversity of discourse and opinion, to help build networks,
and to avoid academic siloing. All of these contribute to the development of a
robust and resilient academic field. We have developed these Ten Simple Rules
both to amplify the voices that have been speaking out and to celebrate the progress
of many Equity, Diversity, and Inclusivity practices that continue to drive the
organisation of academic events. The Rules aim to raise awareness as well as provide
actionable suggestions and tools to support these initiatives further. This aims
to support academic organisations such as the Deep Learning Indaba, Neuromatch
Academy, the IBRO-Simons Computational Neuroscience Imbizo, Biodiversity Information
Standards (TDWG), Arabs in Neuroscience, FAIRPoints, and OLS (formerly Open Life
Science). This article is a call to action for organisers to reevaluate the impact
and reach of their inclusive practices.
acknowledgement: "We would like to recognise the feedback and ideas shared with us
by all attendees during the\r\nfocus groups that contributed to the development
of this paper. Acknowledgements are given\r\nto Elisee Jafsia, Umar Farouk Ahmad,
Zohra Slim, Mizanur Rahman, Rev. Katie Tupling,\r\nChristopher Emmanuel, Abdalrhman
Mostafa, Pradeep Eranti, Toby Hodges, Avishkar\r\nBhoopchand, and Carolyn Dickson.
We would like to thank our community members and\r\nacknowledge their bravery for
sharing their stories that shaped the narrative of these Ten Simple\r\nRules. The
stories shared with us formed the case studies, and while they are anonymous\r\nfor
privacy and protection reasons, it is these stories that were on our mind during
the entire\r\nprocess and kept us going. We acknowledge the efforts of the organisers
that contribute to the\r\nhighly successful events that are the inspiration for
the ideas presented here: the Deep\r\nLearning Indaba, Neuromatch Academy, the IBRO
Simons Computational Neuroscience\r\nImbizo, and OLS. OLS also supported this project
through their mentorship programme,\r\nOpen Seeds."
article_number: e1011797
article_processing_charge: Yes
article_type: original
author:
- first_name: Siobhan Mackenzie
full_name: Hall, Siobhan Mackenzie
last_name: Hall
- first_name: Daniel
full_name: Kochin, Daniel
last_name: Kochin
- first_name: Carmel
full_name: Carne, Carmel
last_name: Carne
- first_name: Patricia
full_name: Herterich, Patricia
last_name: Herterich
- first_name: Kristen Lenay
full_name: Lewers, Kristen Lenay
last_name: Lewers
- first_name: Mohamed
full_name: Abdelhack, Mohamed
last_name: Abdelhack
- first_name: Arun
full_name: Ramasubramanian, Arun
last_name: Ramasubramanian
- first_name: Juno Felecia
full_name: Michael Alphonse, Juno Felecia
last_name: Michael Alphonse
- first_name: Visotheary
full_name: Ung, Visotheary
last_name: Ung
- first_name: Sara
full_name: El-Gebali, Sara
last_name: El-Gebali
- first_name: Christopher
full_name: Currin, Christopher
id: e8321fc5-3091-11eb-8a53-83f309a11ac9
last_name: Currin
orcid: 0000-0002-4809-5059
- first_name: Esther
full_name: Plomp, Esther
last_name: Plomp
- first_name: Rachel
full_name: Thompson, Rachel
last_name: Thompson
- first_name: Malvika
full_name: Sharan, Malvika
last_name: Sharan
citation:
ama: Hall SM, Kochin D, Carne C, et al. Ten simple rules for pushing boundaries
of inclusion at academic events. PLOS Computational Biology. 2024;20(3).
doi:10.1371/journal.pcbi.1011797
apa: Hall, S. M., Kochin, D., Carne, C., Herterich, P., Lewers, K. L., Abdelhack,
M., … Sharan, M. (2024). Ten simple rules for pushing boundaries of inclusion
at academic events. PLOS Computational Biology. Public Library of Science.
https://doi.org/10.1371/journal.pcbi.1011797
chicago: Hall, Siobhan Mackenzie, Daniel Kochin, Carmel Carne, Patricia Herterich,
Kristen Lenay Lewers, Mohamed Abdelhack, Arun Ramasubramanian, et al. “Ten Simple
Rules for Pushing Boundaries of Inclusion at Academic Events.” PLOS Computational
Biology. Public Library of Science, 2024. https://doi.org/10.1371/journal.pcbi.1011797.
ieee: S. M. Hall et al., “Ten simple rules for pushing boundaries of inclusion
at academic events,” PLOS Computational Biology, vol. 20, no. 3. Public
Library of Science, 2024.
ista: Hall SM, Kochin D, Carne C, Herterich P, Lewers KL, Abdelhack M, Ramasubramanian
A, Michael Alphonse JF, Ung V, El-Gebali S, Currin C, Plomp E, Thompson R, Sharan
M. 2024. Ten simple rules for pushing boundaries of inclusion at academic events.
PLOS Computational Biology. 20(3), e1011797.
mla: Hall, Siobhan Mackenzie, et al. “Ten Simple Rules for Pushing Boundaries of
Inclusion at Academic Events.” PLOS Computational Biology, vol. 20, no.
3, e1011797, Public Library of Science, 2024, doi:10.1371/journal.pcbi.1011797.
short: S.M. Hall, D. Kochin, C. Carne, P. Herterich, K.L. Lewers, M. Abdelhack,
A. Ramasubramanian, J.F. Michael Alphonse, V. Ung, S. El-Gebali, C. Currin, E.
Plomp, R. Thompson, M. Sharan, PLOS Computational Biology 20 (2024).
date_created: 2024-04-02T11:37:32Z
date_published: 2024-03-01T00:00:00Z
date_updated: 2025-09-04T13:24:19Z
day: '01'
ddc:
- '000'
department:
- _id: TiVo
doi: 10.1371/journal.pcbi.1011797
external_id:
isi:
- '001181690200005'
pmid:
- '38427633'
file:
- access_level: open_access
checksum: 1f0f837c5b4341f54f6347370ed8c1b7
content_type: application/pdf
creator: dernst
date_created: 2024-04-03T13:29:36Z
date_updated: 2024-04-03T13:29:36Z
file_id: '15289'
file_name: 2024_PloS_Hall.pdf
file_size: 858521
relation: main_file
success: 1
file_date_updated: 2024-04-03T13:29:36Z
has_accepted_license: '1'
intvolume: ' 20'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Computational Biology
publication_identifier:
issn:
- 1553-7358
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ten simple rules for pushing boundaries of inclusion at academic events
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 20
year: '2024'
...
---
DOAJ_listed: '1'
OA_type: gold
_id: '15295'
abstract:
- lang: eng
text: "Background: Benzodiazepines and antidepressants are effective agents for
the treatment of generalized anxiety disorder (GAD), with the HAM-A frequently
used as a primary outcome measure. The GAD literature is inconsistent regarding
which medications are more effective for somatic versus psychic symptoms of GAD,
and treatment guidelines do not advocate for prescribing based on subtype. This
meta-analysis aimed to determine whether benzodiazepines and antidepressants have
a differential impact on the somatic versus psychic subscales of the HAM-A in
GAD.\r\n\r\nMethods: An electronic search was undertaken for randomized controlled
trials of either benzodiazepines or antidepressants for GAD that reported treatment
response using the HAM-A subscales. Data were extracted by independent reviewers.
A random effects assessment of weighted mean difference with 95% confidence intervals
and subgroup difference was applied. All analysis was done on SPSS 26. An assessment
of bias, and of quality of evidence was performed.\r\n\r\nResults: 24 randomized
controlled trials met the inclusion criteria: 18 antidepressant trials, 5 benzodiazepine
trials and 1 of both. 14 studies were assessed as having between some and high
risk of bias, while 10 were assessed as having low risk of bias. Benzodiazepines
(WMD of 1.81 [CI 1.03, 2.58]) were significantly more effective than antidepressants
(WMD of 0.83 [CI 0.64, 1.02]) for reducing somatic symptoms of GAD (Chi2 = 5.81,
p = 0.02), and were also more effective (WMD of 2.46 [CI 1.83, 3.09]) in reducing
psychic symptoms than antidepressants (WMD of 1.83 [CI 1.55, 2.10]), although
this comparison did not reach statistical significance (Chi2 = 3.31, p = 0.07).\r\n\r\nConclusion:
The finding that benzodiazepines were significantly more effective than antidepressants
for somatic symptoms needs to be weighed up against potential benefits of antidepressants
over benzodiazepines. It may be useful for future treatment guidelines for GAD
to explicitly consider symptom subtype."
article_number: '152479'
article_processing_charge: Yes
article_type: original
author:
- first_name: Chad
full_name: Beyer, Chad
last_name: Beyer
- first_name: Christopher
full_name: Currin, Christopher
id: e8321fc5-3091-11eb-8a53-83f309a11ac9
last_name: Currin
orcid: 0000-0002-4809-5059
- first_name: Taryn
full_name: Williams, Taryn
last_name: Williams
- first_name: Dan J.
full_name: Stein, Dan J.
last_name: Stein
citation:
ama: Beyer C, Currin C, Williams T, Stein DJ. Meta-analysis of the comparative efficacy
of benzodiazepines and antidepressants for psychic versus somatic symptoms of
generalized anxiety disorder. Comprehensive Psychiatry. 2024;132. doi:10.1016/j.comppsych.2024.152479
apa: Beyer, C., Currin, C., Williams, T., & Stein, D. J. (2024). Meta-analysis
of the comparative efficacy of benzodiazepines and antidepressants for psychic
versus somatic symptoms of generalized anxiety disorder. Comprehensive Psychiatry.
Elsevier. https://doi.org/10.1016/j.comppsych.2024.152479
chicago: Beyer, Chad, Christopher Currin, Taryn Williams, and Dan J. Stein. “Meta-Analysis
of the Comparative Efficacy of Benzodiazepines and Antidepressants for Psychic
versus Somatic Symptoms of Generalized Anxiety Disorder.” Comprehensive Psychiatry.
Elsevier, 2024. https://doi.org/10.1016/j.comppsych.2024.152479.
ieee: C. Beyer, C. Currin, T. Williams, and D. J. Stein, “Meta-analysis of the comparative
efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms
of generalized anxiety disorder,” Comprehensive Psychiatry, vol. 132. Elsevier,
2024.
ista: Beyer C, Currin C, Williams T, Stein DJ. 2024. Meta-analysis of the comparative
efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms
of generalized anxiety disorder. Comprehensive Psychiatry. 132, 152479.
mla: Beyer, Chad, et al. “Meta-Analysis of the Comparative Efficacy of Benzodiazepines
and Antidepressants for Psychic versus Somatic Symptoms of Generalized Anxiety
Disorder.” Comprehensive Psychiatry, vol. 132, 152479, Elsevier, 2024,
doi:10.1016/j.comppsych.2024.152479.
short: C. Beyer, C. Currin, T. Williams, D.J. Stein, Comprehensive Psychiatry 132
(2024).
date_created: 2024-04-07T22:00:55Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-09-04T13:30:08Z
day: '01'
ddc:
- '570'
department:
- _id: TiVo
doi: 10.1016/j.comppsych.2024.152479
external_id:
isi:
- '001221136000001'
pmid:
- '38564872'
file:
- access_level: open_access
checksum: aadb57448b5f170761ed72cbcc31ba16
content_type: application/pdf
creator: dernst
date_created: 2025-01-13T10:47:20Z
date_updated: 2025-01-13T10:47:20Z
file_id: '18839'
file_name: 2024_ComprehensivePsychiatry_Beyer.pdf
file_size: 2874425
relation: main_file
success: 1
file_date_updated: 2025-01-13T10:47:20Z
has_accepted_license: '1'
intvolume: ' 132'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Comprehensive Psychiatry
publication_identifier:
eissn:
- 1532-8384
issn:
- 0010-440X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants
for psychic versus somatic symptoms of generalized anxiety disorder
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 132
year: '2024'
...
---
_id: '15296'
abstract:
- lang: eng
text: In this paper we build a constructive algorithm that returns a rectifiable
curve that connects two points in a weakly convex set in a Hilbert space. We have
proven that this algorithm converges and obtained an estimate on the curve’s length
and compare the length of the curve obtained to known results.
article_number: '080002'
article_processing_charge: No
author:
- first_name: Mariana
full_name: Lopushanski, Mariana
last_name: Lopushanski
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
citation:
ama: 'Lopushanski M, Ivanov G. A constructive algorithm for building rectifiable
curves in weakly convex sets. In: AIP Conference Proceedings. Vol 3030.
AIP Publishing; 2024. doi:10.1063/5.0195908'
apa: 'Lopushanski, M., & Ivanov, G. (2024). A constructive algorithm for building
rectifiable curves in weakly convex sets. In AIP Conference Proceedings
(Vol. 3030). Virtual: AIP Publishing. https://doi.org/10.1063/5.0195908'
chicago: Lopushanski, Mariana, and Grigory Ivanov. “A Constructive Algorithm for
Building Rectifiable Curves in Weakly Convex Sets.” In AIP Conference Proceedings,
Vol. 3030. AIP Publishing, 2024. https://doi.org/10.1063/5.0195908.
ieee: M. Lopushanski and G. Ivanov, “A constructive algorithm for building rectifiable
curves in weakly convex sets,” in AIP Conference Proceedings, Virtual,
2024, vol. 3030, no. 1.
ista: 'Lopushanski M, Ivanov G. 2024. A constructive algorithm for building rectifiable
curves in weakly convex sets. AIP Conference Proceedings. ICCMSE: International
Conference of Computational Methods in Sciences and Engiineering vol. 3030, 080002.'
mla: Lopushanski, Mariana, and Grigory Ivanov. “A Constructive Algorithm for Building
Rectifiable Curves in Weakly Convex Sets.” AIP Conference Proceedings,
vol. 3030, no. 1, 080002, AIP Publishing, 2024, doi:10.1063/5.0195908.
short: M. Lopushanski, G. Ivanov, in:, AIP Conference Proceedings, AIP Publishing,
2024.
conference:
end_date: 2022-10-29
location: Virtual
name: 'ICCMSE: International Conference of Computational Methods in Sciences and
Engiineering'
start_date: 2022-10-26
date_created: 2024-04-07T22:00:55Z
date_published: 2024-03-14T00:00:00Z
date_updated: 2024-04-08T07:40:53Z
day: '14'
department:
- _id: UlWa
doi: 10.1063/5.0195908
intvolume: ' 3030'
issue: '1'
language:
- iso: eng
month: '03'
oa_version: None
publication: AIP Conference Proceedings
publication_identifier:
eissn:
- 1551-7616
issn:
- 0094-243X
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: A constructive algorithm for building rectifiable curves in weakly convex sets
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3030
year: '2024'
...
---
APC_amount: 3149,96 EUR
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '15297'
abstract:
- lang: eng
text: Populations evolve by accumulating advantageous mutations. Every population
has some spatial structure that can be modeled by an underlying network. The network
then influences the probability that new advantageous mutations fixate. Amplifiers
of selection are networks that increase the fixation probability of advantageous
mutants, as compared to the unstructured fully-connected network. Whether or not
a network is an amplifier depends on the choice of the random process that governs
the evolutionary dynamics. Two popular choices are Moran process with Birth-death
updating and Moran process with death-Birth updating. Interestingly, while some
networks are amplifiers under Birth-death updating and other networks are amplifiers
under death-Birth updating, so far no spatial structures have been found that
function as an amplifier under both types of updating simultaneously. In this
work, we identify networks that act as amplifiers of selection under both versions
of the Moran process. The amplifiers are robust, modular, and increase fixation
probability for any mutant fitness advantage in a range r ∈ (1, 1.2). To complement
this positive result, we also prove that for certain quantities closely related
to fixation probability, it is impossible to improve them simultaneously for both
versions of the Moran process. Together, our results highlight how the two versions
of the Moran process differ and what they have in common.
acknowledgement: "We thank Gavin Rees for helpful discussions. J.S., S.J., and K.C
were supported by\r\nEuropean Research Council (ERC) CoG 863818 (ForM-SMArt). J.T
was supported by Center for Foundations of Modern Computer Science (Charles University
project UNCE/SCI/004) and by the project PRIMUS/24/SCI/012 from Charles University. "
article_number: e1012008
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Jakub
full_name: Svoboda, Jakub
id: 130759D2-D7DD-11E9-87D2-DE0DE6697425
last_name: Svoboda
orcid: 0000-0002-1419-3267
- first_name: Soham Shrikant
full_name: Joshi, Soham Shrikant
id: f97aac0e-f57c-11ee-93d0-a5a82d8df168
last_name: Joshi
- first_name: Josef
full_name: Tkadlec, Josef
id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
last_name: Tkadlec
orcid: 0000-0002-1097-9684
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
citation:
ama: Svoboda J, Joshi SS, Tkadlec J, Chatterjee K. Amplifiers of selection for the
Moran process with both Birth-death and death-Birth updating. PLoS Computational
Biology. 2024;20(3). doi:10.1371/journal.pcbi.1012008
apa: Svoboda, J., Joshi, S. S., Tkadlec, J., & Chatterjee, K. (2024). Amplifiers
of selection for the Moran process with both Birth-death and death-Birth updating.
PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1012008
chicago: Svoboda, Jakub, Soham Shrikant Joshi, Josef Tkadlec, and Krishnendu Chatterjee.
“Amplifiers of Selection for the Moran Process with Both Birth-Death and Death-Birth
Updating.” PLoS Computational Biology. Public Library of Science, 2024.
https://doi.org/10.1371/journal.pcbi.1012008.
ieee: J. Svoboda, S. S. Joshi, J. Tkadlec, and K. Chatterjee, “Amplifiers of selection
for the Moran process with both Birth-death and death-Birth updating,” PLoS
Computational Biology, vol. 20, no. 3. Public Library of Science, 2024.
ista: Svoboda J, Joshi SS, Tkadlec J, Chatterjee K. 2024. Amplifiers of selection
for the Moran process with both Birth-death and death-Birth updating. PLoS Computational
Biology. 20(3), e1012008.
mla: Svoboda, Jakub, et al. “Amplifiers of Selection for the Moran Process with
Both Birth-Death and Death-Birth Updating.” PLoS Computational Biology,
vol. 20, no. 3, e1012008, Public Library of Science, 2024, doi:10.1371/journal.pcbi.1012008.
short: J. Svoboda, S.S. Joshi, J. Tkadlec, K. Chatterjee, PLoS Computational Biology
20 (2024).
corr_author: '1'
date_created: 2024-04-07T22:00:55Z
date_published: 2024-03-29T00:00:00Z
date_updated: 2026-04-07T11:49:11Z
day: '29'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1371/journal.pcbi.1012008
ec_funded: 1
external_id:
arxiv:
- '2401.14914'
isi:
- '001194482400002'
file:
- access_level: open_access
checksum: a511cf369d9172beb123fe73f291b5cc
content_type: application/pdf
creator: dernst
date_created: 2024-08-20T10:52:28Z
date_updated: 2024-08-20T10:52:28Z
file_id: '17450'
file_name: 2024_PloSComBio_Svoboda.pdf
file_size: 1425292
relation: main_file
success: 1
file_date_updated: 2024-08-20T10:52:28Z
has_accepted_license: '1'
intvolume: ' 20'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: PLoS Computational Biology
publication_identifier:
eissn:
- 1553-7358
issn:
- 1553-734X
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
record:
- id: '20138'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Amplifiers of selection for the Moran process with both Birth-death and death-Birth
updating
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 20
year: '2024'
...
---
_id: '15298'
abstract:
- lang: eng
text: Mountains are important suppliers of freshwater to downstream areas, affecting
large populations in particular in High Mountain Asia (HMA). Yet, the propagation
of water from HMA headwaters to downstream areas is not fully understood, as interactions
in the mountain water cycle between the cryo-, hydro- and biosphere remain elusive.
We review the definition of blue and green water fluxes as liquid water that contributes
to runoff at the outlet of the selected domain (blue) and water lost to the atmosphere
through vapor fluxes, that is evaporation from water, ground, and interception
plus transpiration (green) and propose to add the term white water to account
for the (often neglected) evaporation and sublimation from snow and ice. We provide
an assessment of models that can simulate the cryo-hydro-biosphere continuum and
the interactions between spheres in high mountain catchments, going beyond disciplinary
separations. Land surface models are uniquely able to account for such complexity,
since they solve the coupled fluxes of water, energy, and carbon between the land
surface and atmosphere. Due to the mechanistic nature of such models, specific
variables can be compared systematically to independent remote sensing observations
– providing vital insights into model accuracy and enabling the understanding
of the complex watersheds of HMA. We discuss recent developments in spaceborne
earth observation products that have the potential to support catchment modeling
in high mountain regions. We then present a pilot study application of the mechanistic
land surface model Tethys & Chloris to a glacierized watershed in the Nepalese
Himalayas and discuss the use of high-resolution earth observation data to constrain
the meteorological forcing uncertainty and validate model results. We use these
insights to highlight the remaining challenges and future opportunities that remote
sensing data presents for land surface modeling in HMA.
acknowledgement: 'This work was supported by the ESA and NRSCC Dragon 5 cooperation
project “Cryosphere-hydrosphere interactions of the Asian water towers: using remote
sensing to drive hyper-resolution ecohydrological modelling” [Grant no. 59199].
PB and FP acknowledge funding from the SNSF (High-elevation precipitation in High
Mountain Asia, HOPE)) [Grant no. 183633]. ESM, MK, SFu and FP acknowledge funding
from the ERC under the European Union’s Horizon 2020 research and innovation program
(Rapid mass losses of debris-covered glaciers in High Mountain Asia, RAVEN) [Grant
no. 772751]. LJ, CZ and MMe acknowledge the Second Tibetan Plateau Scientific Expedition
and Research Program (STEP) [grant no. 2019QZKK010308, no. 2019QZKK0206], the National
Natural Science Foundation of China projects (Grant no. 42171039, no. 91737205),
the Chinese Academy of Sciences President’s International Fellowship Initiative
[Grant no. 2020VTA0001], and the MOST High-Level Foreign Expert Program [Grant no.
G2022055010L].'
article_processing_charge: Yes
article_type: original
author:
- first_name: Pascal
full_name: Buri, Pascal
last_name: Buri
- first_name: Simone
full_name: Fatichi, Simone
last_name: Fatichi
- first_name: Thomas
full_name: Shaw, Thomas
id: 3caa3f91-1f03-11ee-96ce-e0e553054d6e
last_name: Shaw
orcid: 0000-0001-7640-6152
- first_name: Catriona Louise
full_name: Fyffe, Catriona Louise
id: 001b0422-8d15-11ed-bc51-cab6c037a228
last_name: Fyffe
- first_name: Evan S.
full_name: Miles, Evan S.
last_name: Miles
- first_name: Michael
full_name: Mccarthy, Michael
id: 22a2674a-61ce-11ee-94b5-d18813baf16f
last_name: Mccarthy
- first_name: Marin
full_name: Kneib, Marin
last_name: Kneib
- first_name: Shaoting
full_name: Ren, Shaoting
last_name: Ren
- first_name: Achille
full_name: Jouberton, Achille
last_name: Jouberton
- first_name: Stefan
full_name: Fugger, Stefan
last_name: Fugger
- first_name: Li
full_name: Jia, Li
last_name: Jia
- first_name: Jing
full_name: Zhang, Jing
last_name: Zhang
- first_name: Cong
full_name: Shen, Cong
last_name: Shen
- first_name: Chaolei
full_name: Zheng, Chaolei
last_name: Zheng
- first_name: Massimo
full_name: Menenti, Massimo
last_name: Menenti
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
orcid: 0000-0002-5554-8087
citation:
ama: 'Buri P, Fatichi S, Shaw T, et al. Land surface modeling informed by earth
observation data: Toward understanding blue–green–white water fluxes in High Mountain
Asia. Geo-Spatial Information Science. 2024;27(3):703-727. doi:10.1080/10095020.2024.2330546'
apa: 'Buri, P., Fatichi, S., Shaw, T., Fyffe, C. L., Miles, E. S., McCarthy, M.,
… Pellicciotti, F. (2024). Land surface modeling informed by earth observation
data: Toward understanding blue–green–white water fluxes in High Mountain Asia.
Geo-Spatial Information Science. Taylor & Francis. https://doi.org/10.1080/10095020.2024.2330546'
chicago: 'Buri, Pascal, Simone Fatichi, Thomas Shaw, Catriona Louise Fyffe, Evan
S. Miles, Michael McCarthy, Marin Kneib, et al. “Land Surface Modeling Informed
by Earth Observation Data: Toward Understanding Blue–Green–White Water Fluxes
in High Mountain Asia.” Geo-Spatial Information Science. Taylor & Francis,
2024. https://doi.org/10.1080/10095020.2024.2330546.'
ieee: 'P. Buri et al., “Land surface modeling informed by earth observation
data: Toward understanding blue–green–white water fluxes in High Mountain Asia,”
Geo-Spatial Information Science, vol. 27, no. 3. Taylor & Francis,
pp. 703–727, 2024.'
ista: 'Buri P, Fatichi S, Shaw T, Fyffe CL, Miles ES, McCarthy M, Kneib M, Ren S,
Jouberton A, Fugger S, Jia L, Zhang J, Shen C, Zheng C, Menenti M, Pellicciotti
F. 2024. Land surface modeling informed by earth observation data: Toward understanding
blue–green–white water fluxes in High Mountain Asia. Geo-Spatial Information Science.
27(3), 703–727.'
mla: 'Buri, Pascal, et al. “Land Surface Modeling Informed by Earth Observation
Data: Toward Understanding Blue–Green–White Water Fluxes in High Mountain Asia.”
Geo-Spatial Information Science, vol. 27, no. 3, Taylor & Francis,
2024, pp. 703–27, doi:10.1080/10095020.2024.2330546.'
short: P. Buri, S. Fatichi, T. Shaw, C.L. Fyffe, E.S. Miles, M. McCarthy, M. Kneib,
S. Ren, A. Jouberton, S. Fugger, L. Jia, J. Zhang, C. Shen, C. Zheng, M. Menenti,
F. Pellicciotti, Geo-Spatial Information Science 27 (2024) 703–727.
date_created: 2024-04-07T22:00:56Z
date_published: 2024-03-22T00:00:00Z
date_updated: 2025-09-04T13:28:38Z
day: '22'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.1080/10095020.2024.2330546
external_id:
isi:
- '001189470100001'
file:
- access_level: open_access
checksum: afbfc4e9f1bf2a00711efc30ad667c40
content_type: application/pdf
creator: dernst
date_created: 2024-07-29T11:34:54Z
date_updated: 2024-07-29T11:34:54Z
file_id: '17342'
file_name: 2024_GeoSpatialInfo_Buri.pdf
file_size: 15678450
relation: main_file
success: 1
file_date_updated: 2024-07-29T11:34:54Z
has_accepted_license: '1'
intvolume: ' 27'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 703-727
publication: Geo-Spatial Information Science
publication_identifier:
issn:
- 1009-5020
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Land surface modeling informed by earth observation data: Toward understanding
blue–green–white water fluxes in High Mountain Asia'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 27
year: '2024'
...
---
_id: '15301'
abstract:
- lang: eng
text: Plant morphogenesis relies exclusively on oriented cell expansion and division.
Nonetheless, the mechanism(s) determining division plane orientation remain elusive.
Here, we studied tissue healing after laser-assisted wounding in roots of Arabidopsis
thaliana and uncovered how mechanical forces stabilize and reorient the microtubule
cytoskeleton for the orientation of cell division. We identified that root tissue
functions as an interconnected cell matrix, with a radial gradient of tissue extendibility
causing predictable tissue deformation after wounding. This deformation causes
instant redirection of expansion in the surrounding cells and reorientation of
microtubule arrays, ultimately predicting cell division orientation. Microtubules
are destabilized under low tension, whereas stretching of cells, either through
wounding or external aspiration, immediately induces their polymerization. The
higher microtubule abundance in the stretched cell parts leads to the reorientation
of microtubule arrays and, ultimately, informs cell division planes. This provides
a long-sought mechanism for flexible re-arrangement of cell divisions by mechanical
forces for tissue reconstruction and plant architecture.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: We are thankful to Simon Gilroy, Alexander Jones, and Lieven De Veylder
for sharing published material. We thank the Imaging & Optics and Life Science Facilities
at IST Austria, the Biooptics facility at GMI, and the Cellular Imaging Facility
at DBMV UNIL for providing invaluable assistance. The research leading to these
results has received funding from the European Research Council under the European
Union's Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no. 742985,
from the FWF under the stand-alone grant P29988, and from EMBO (ALTF 253-2023).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lukas
full_name: Hörmayer, Lukas
id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
last_name: Hörmayer
orcid: 0000-0001-8295-2926
- first_name: Juan C
full_name: Montesinos López, Juan C
id: 310A8E3E-F248-11E8-B48F-1D18A9856A87
last_name: Montesinos López
orcid: 0000-0001-9179-6099
- first_name: N
full_name: Trozzi, N
last_name: Trozzi
- first_name: Leonhard
full_name: Spona, Leonhard
id: b52391fb-f636-11ee-939c-8a8c47552e8a
last_name: Spona
- first_name: Saiko
full_name: Yoshida, Saiko
id: 2E46069C-F248-11E8-B48F-1D18A9856A87
last_name: Yoshida
- first_name: Petra
full_name: Marhavá, Petra
id: 44E59624-F248-11E8-B48F-1D18A9856A87
last_name: Marhavá
- first_name: Silvia
full_name: Caballero Mancebo, Silvia
id: 2F1E1758-F248-11E8-B48F-1D18A9856A87
last_name: Caballero Mancebo
orcid: 0000-0002-5223-3346
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
- first_name: Y
full_name: Dagdas, Y
last_name: Dagdas
- first_name: M
full_name: Majda, M
last_name: Majda
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Hörmayer L, Montesinos López JC, Trozzi N, et al. Mechanical forces in plant
tissue matrix orient cell divisions via microtubule stabilization. Developmental
Cell. 2024;59(10):1333-1344.e4. doi:10.1016/j.devcel.2024.03.009
apa: Hörmayer, L., Montesinos López, J. C., Trozzi, N., Spona, L., Yoshida, S.,
Marhavá, P., … Friml, J. (2024). Mechanical forces in plant tissue matrix orient
cell divisions via microtubule stabilization. Developmental Cell. Elsevier.
https://doi.org/10.1016/j.devcel.2024.03.009
chicago: Hörmayer, Lukas, Juan C Montesinos López, N Trozzi, Leonhard Spona, Saiko
Yoshida, Petra Marhavá, Silvia Caballero Mancebo, et al. “Mechanical Forces in
Plant Tissue Matrix Orient Cell Divisions via Microtubule Stabilization.” Developmental
Cell. Elsevier, 2024. https://doi.org/10.1016/j.devcel.2024.03.009.
ieee: L. Hörmayer et al., “Mechanical forces in plant tissue matrix orient
cell divisions via microtubule stabilization,” Developmental Cell, vol.
59, no. 10. Elsevier, p. 1333–1344.e4, 2024.
ista: Hörmayer L, Montesinos López JC, Trozzi N, Spona L, Yoshida S, Marhavá P,
Caballero Mancebo S, Benková E, Heisenberg C-PJ, Dagdas Y, Majda M, Friml J. 2024.
Mechanical forces in plant tissue matrix orient cell divisions via microtubule
stabilization. Developmental Cell. 59(10), 1333–1344.e4.
mla: Hörmayer, Lukas, et al. “Mechanical Forces in Plant Tissue Matrix Orient Cell
Divisions via Microtubule Stabilization.” Developmental Cell, vol. 59,
no. 10, Elsevier, 2024, p. 1333–1344.e4, doi:10.1016/j.devcel.2024.03.009.
short: L. Hörmayer, J.C. Montesinos López, N. Trozzi, L. Spona, S. Yoshida, P. Marhavá,
S. Caballero Mancebo, E. Benková, C.-P.J. Heisenberg, Y. Dagdas, M. Majda, J.
Friml, Developmental Cell 59 (2024) 1333–1344.e4.
corr_author: '1'
date_created: 2024-04-08T12:07:57Z
date_published: 2024-05-20T00:00:00Z
date_updated: 2025-09-04T13:32:08Z
day: '20'
ddc:
- '570'
department:
- _id: JiFr
- _id: EvBe
- _id: CaHe
doi: 10.1016/j.devcel.2024.03.009
ec_funded: 1
external_id:
isi:
- '001301584600001'
pmid:
- '38579717'
file:
- access_level: open_access
checksum: 22b374fb50a40d380b7686c84258d271
content_type: application/pdf
creator: dernst
date_created: 2024-08-20T11:22:16Z
date_updated: 2024-08-20T11:22:16Z
file_id: '17452'
file_name: 2024_DevelopmentalCell_Hoermayer.pdf
file_size: 5195262
relation: main_file
success: 1
file_date_updated: 2024-08-20T11:22:16Z
has_accepted_license: '1'
intvolume: ' 59'
isi: 1
issue: '10'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1333-1344.e4
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 262EF96E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P29988
name: RNA-directed DNA methylation in plant development
publication: Developmental Cell
publication_identifier:
eissn:
- 1878-1551
issn:
- 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/how-plants-heal-wounds/
scopus_import: '1'
status: public
title: Mechanical forces in plant tissue matrix orient cell divisions via microtubule
stabilization
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 59
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '15311'
abstract:
- lang: eng
text: Materials with low thermal conductivity usually have complex crystal structures.
Herein we experimentally find that a simple crystal structure material AgTlI2
(I4/mcm) owns an extremely low thermal conductivity of 0.25 W/mK at room temperature.
To understand this anomaly, we perform in-depth theoretical studies based on ab
initio molecular dynamics simulations and anharmonic lattice dynamics. We find
that the unique atomic arrangement and weak chemical bonding provide a permissive
environment for strong oscillations of Ag atoms, leading to a considerable rattling
behaviour and giant lattice anharmonicity. This feature is also verified by the
experimental probability density function refinement of single-crystal diffraction.
The particularly strong anharmonicity breaks down the conventional phonon gas
model, giving rise to non-negligible wavelike phonon behaviours in AgTlI2 at 300
K. Intriguingly, unlike many strongly anharmonic materials where a small propagative
thermal conductivity is often accompanied by a large diffusive thermal conductivity,
we find an unusual coexistence of ultralow propagative and diffusive thermal conductivities
in AgTlI2 based on the thermal transport unified theory. This study underscores
the potential of simple crystal structures in achieving low thermal conductivity
and encourages further experimental research to enrich the family of materials
with ultralow thermal conductivity.
acknowledgement: "We thank Bingqing Cheng (IST Austria) and Terumasa Tadano (NIMS\r\nJapan)
for reading the manuscript and providing insightful comments.\r\nThis work is supported
by the Research Grants Council of Hong Kong\r\n(C7002-22Y and 17318122). ZZ acknowledges
the European Union’s\r\nHorizon 2020 research and innovation programme under the
Marie\r\nSkłodowska-Curie grant agreement No. 101034413. XS acknowledges\r\nfunding
from the European Union’s Horizon 2020 research and innovation programme under the
Marie Sklodowska-Curie grant agreement\r\nNo. 101034329, and the WINNING Normandy
Programme supported by\r\nthe Normandy Region. The computations were performed using\r\nresearch
computing facilities offered by Information Technology Services, at the University
of Hong Kong."
article_number: '3007'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Zezhu
full_name: Zeng, Zezhu
id: 54a2c730-803f-11ed-ab7e-95b29d2680e7
last_name: Zeng
- first_name: Xingchen
full_name: Shen, Xingchen
last_name: Shen
- first_name: Ruihuan
full_name: Cheng, Ruihuan
last_name: Cheng
- first_name: Olivier
full_name: Perez, Olivier
last_name: Perez
- first_name: Niuchang
full_name: Ouyang, Niuchang
last_name: Ouyang
- first_name: Zheyong
full_name: Fan, Zheyong
last_name: Fan
- first_name: Pierric
full_name: Lemoine, Pierric
last_name: Lemoine
- first_name: Bernard
full_name: Raveau, Bernard
last_name: Raveau
- first_name: Emmanuel
full_name: Guilmeau, Emmanuel
last_name: Guilmeau
- first_name: Yue
full_name: Chen, Yue
last_name: Chen
citation:
ama: Zeng Z, Shen X, Cheng R, et al. Pushing thermal conductivity to its lower limit
in crystals with simple structures. Nature Communications. 2024;15. doi:10.1038/s41467-024-46799-3
apa: Zeng, Z., Shen, X., Cheng, R., Perez, O., Ouyang, N., Fan, Z., … Chen, Y. (2024).
Pushing thermal conductivity to its lower limit in crystals with simple structures.
Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-024-46799-3
chicago: Zeng, Zezhu, Xingchen Shen, Ruihuan Cheng, Olivier Perez, Niuchang Ouyang,
Zheyong Fan, Pierric Lemoine, Bernard Raveau, Emmanuel Guilmeau, and Yue Chen.
“Pushing Thermal Conductivity to Its Lower Limit in Crystals with Simple Structures.”
Nature Communications. Springer Nature, 2024. https://doi.org/10.1038/s41467-024-46799-3.
ieee: Z. Zeng et al., “Pushing thermal conductivity to its lower limit in
crystals with simple structures,” Nature Communications, vol. 15. Springer
Nature, 2024.
ista: Zeng Z, Shen X, Cheng R, Perez O, Ouyang N, Fan Z, Lemoine P, Raveau B, Guilmeau
E, Chen Y. 2024. Pushing thermal conductivity to its lower limit in crystals with
simple structures. Nature Communications. 15, 3007.
mla: Zeng, Zezhu, et al. “Pushing Thermal Conductivity to Its Lower Limit in Crystals
with Simple Structures.” Nature Communications, vol. 15, 3007, Springer
Nature, 2024, doi:10.1038/s41467-024-46799-3.
short: Z. Zeng, X. Shen, R. Cheng, O. Perez, N. Ouyang, Z. Fan, P. Lemoine, B. Raveau,
E. Guilmeau, Y. Chen, Nature Communications 15 (2024).
corr_author: '1'
date_created: 2024-04-14T22:01:00Z
date_published: 2024-04-08T00:00:00Z
date_updated: 2025-09-04T13:46:19Z
day: '08'
ddc:
- '530'
department:
- _id: BiCh
doi: 10.1038/s41467-024-46799-3
ec_funded: 1
external_id:
arxiv:
- '2310.01838'
isi:
- '001198902100029'
pmid:
- '38589376'
file:
- access_level: open_access
checksum: f81bd6ba42f740d060fb446eeebc1035
content_type: application/pdf
creator: cchlebak
date_created: 2024-04-26T10:34:07Z
date_updated: 2024-04-26T10:34:07Z
file_id: '15346'
file_name: 2024_NatComm_Zeng.pdf
file_size: 3049375
relation: main_file
success: 1
file_date_updated: 2024-04-26T10:34:07Z
has_accepted_license: '1'
intvolume: ' 15'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Pushing thermal conductivity to its lower limit in crystals with simple structures
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 15
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '15312'
abstract:
- lang: eng
text: The question of whether or not a given integral polynomial takes infinitely
many square-free values has only been addressed unconditionally for polynomials
of degree at most 3. We address this question, on average, for polynomials of
arbitrary degree.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Igor E.
full_name: Shparlinski, Igor E.
last_name: Shparlinski
citation:
ama: Browning TD, Shparlinski IE. Square-free values of random polynomials. Journal
of Number Theory. 2024;261:220-240. doi:10.1016/j.jnt.2024.02.013
apa: Browning, T. D., & Shparlinski, I. E. (2024). Square-free values of random
polynomials. Journal of Number Theory. Elsevier. https://doi.org/10.1016/j.jnt.2024.02.013
chicago: Browning, Timothy D, and Igor E. Shparlinski. “Square-Free Values of Random
Polynomials.” Journal of Number Theory. Elsevier, 2024. https://doi.org/10.1016/j.jnt.2024.02.013.
ieee: T. D. Browning and I. E. Shparlinski, “Square-free values of random polynomials,”
Journal of Number Theory, vol. 261. Elsevier, pp. 220–240, 2024.
ista: Browning TD, Shparlinski IE. 2024. Square-free values of random polynomials.
Journal of Number Theory. 261, 220–240.
mla: Browning, Timothy D., and Igor E. Shparlinski. “Square-Free Values of Random
Polynomials.” Journal of Number Theory, vol. 261, Elsevier, 2024, pp. 220–40,
doi:10.1016/j.jnt.2024.02.013.
short: T.D. Browning, I.E. Shparlinski, Journal of Number Theory 261 (2024) 220–240.
corr_author: '1'
date_created: 2024-04-14T22:01:00Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2025-09-04T13:47:43Z
day: '01'
ddc:
- '510'
department:
- _id: TiBr
doi: 10.1016/j.jnt.2024.02.013
external_id:
arxiv:
- '2305.15493'
isi:
- '001220725000001'
file:
- access_level: open_access
checksum: 614032802febde0aa8e904e9a8ef99ab
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T09:00:02Z
date_updated: 2025-01-09T09:00:02Z
file_id: '18794'
file_name: 2024_JourNumberTheory_Browning.pdf
file_size: 394850
relation: main_file
success: 1
file_date_updated: 2025-01-09T09:00:02Z
has_accepted_license: '1'
intvolume: ' 261'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 220-240
publication: Journal of Number Theory
publication_identifier:
issn:
- 0022-314X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Square-free values of random polynomials
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 261
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '15313'
abstract:
- lang: eng
text: Our goal is to investigate fundamental properties of the system of internally
cooled convection. The system consists of an upward thermal flux at the lower
boundary, a mean temperature lapse-rate and a constant cooling term in the bulk
with the bulk cooling in thermal equilibrium with the input heat flux. This simple
model represents idealised dry convection in the atmospheric boundary layer, where
the cooling mimics the radiative cooling to space notably through longwave radiation.
We perform linear stability analysis of the model for different values of the
mean stratification to derive the critical forcing above which the fluid is convectively
unstable to small perturbations. The dynamic behavior of the fluid system is described
and the scaling of various important measured quantities such as the total vertical
convective heat flux and the upward mass flux is measured. We introduce a lapse-rate
dependent dimensionless Rayleigh-number Ray that determines the behavior of the
system, finding that the convective heat-flux and mass-flux scale approximately
as Ray0.5 and Ray0.7 respectively. The area-fraction of the domain that is occupied
by upward and downward moving fluid and the skewness of the vertical velocity
are studied to understand the asymmetry inherent in the system. We conclude with
a short discussion on the relevance to atmospheric convection and the scope for
further investigations of atmospheric convection using similar simplified approaches.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This project has received funding from the European Union’s Horizon
2020 research and innovation programme under the Marie Sklodowska–Curie grant agreement
No. 101034413. CM gratefully acknowledges funding from the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation program (Project
CLUSTER, Grant Agreement No. 805041). This research was supported by the Scientific
Service Units (SSU) of IST Austria through resources provided by Scientific Computing
(SciComp).
article_number: '108011'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lokahith N
full_name: Agasthya, Lokahith N
id: cd100965-0804-11ed-9c55-f4878ff4e877
last_name: Agasthya
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: Agasthya LN, Muller CJ. Dynamics and scaling of internally cooled convection.
Communications in Nonlinear Science and Numerical Simulation. 2024;134.
doi:10.1016/j.cnsns.2024.108011
apa: Agasthya, L. N., & Muller, C. J. (2024). Dynamics and scaling of internally
cooled convection. Communications in Nonlinear Science and Numerical Simulation.
Elsevier. https://doi.org/10.1016/j.cnsns.2024.108011
chicago: Agasthya, Lokahith N, and Caroline J Muller. “Dynamics and Scaling of Internally
Cooled Convection.” Communications in Nonlinear Science and Numerical Simulation.
Elsevier, 2024. https://doi.org/10.1016/j.cnsns.2024.108011.
ieee: L. N. Agasthya and C. J. Muller, “Dynamics and scaling of internally cooled
convection,” Communications in Nonlinear Science and Numerical Simulation,
vol. 134. Elsevier, 2024.
ista: Agasthya LN, Muller CJ. 2024. Dynamics and scaling of internally cooled convection.
Communications in Nonlinear Science and Numerical Simulation. 134, 108011.
mla: Agasthya, Lokahith N., and Caroline J. Muller. “Dynamics and Scaling of Internally
Cooled Convection.” Communications in Nonlinear Science and Numerical Simulation,
vol. 134, 108011, Elsevier, 2024, doi:10.1016/j.cnsns.2024.108011.
short: L.N. Agasthya, C.J. Muller, Communications in Nonlinear Science and Numerical
Simulation 134 (2024).
corr_author: '1'
date_created: 2024-04-14T22:01:01Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-09-04T13:37:48Z
day: '01'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1016/j.cnsns.2024.108011
ec_funded: 1
external_id:
arxiv:
- '2311.04114'
isi:
- '001238294600001'
file:
- access_level: open_access
checksum: 9b7c2b8281d0b7bc7f08e0468168324c
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T09:05:31Z
date_updated: 2025-01-09T09:05:31Z
file_id: '18795'
file_name: 2024_CommNonlinear_Agasthya.pdf
file_size: 1257925
relation: main_file
success: 1
file_date_updated: 2025-01-09T09:05:31Z
has_accepted_license: '1'
intvolume: ' 134'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
- _id: 629205d8-2b32-11ec-9570-e1356ff73576
call_identifier: H2020
grant_number: '805041'
name: Organization of CLoUdS, and implications of Tropical cyclones and for the
Energetics of the tropics, in current and waRming climate
publication: Communications in Nonlinear Science and Numerical Simulation
publication_identifier:
issn:
- 1007-5704
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamics and scaling of internally cooled convection
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 134
year: '2024'
...
---
_id: '15314'
abstract:
- lang: eng
text: Development of electroactive materials exhibiting high performance with superior
stability is crucial in the field of supercapacitors and battery research. We
report on synthesis of highly stable composite of semi-polycrystalline polyaniline
and graphene (SPani-graphene) and its application in supercapacitor electrodes.
The electrochemical behavior and device performance of the electrodes were investigated
through cyclic voltammetry (CV), galvanostatic charge-discharge GCD) and electrochemical
impedance spectroscopy (EIS) in a 3-electrode and a 2-electrode (device) cell
configurations, repectively. The cell specific capacitance (Cell Csp) achieved
from the 2-electrode symmetric cell configuration was 525.5 F g−1 at 0.1 A g−1
using polymer gel electrolyte (PGE). The PGE in this work is xanthan gum jellied
in 1 M aq. Na2SO4. The maximum energy density and power density achieved from
the device was 46.7 Wh kg−1 and 16.16 kW kg−1, respectively, at 0.4 A g−1. Furthermore,
the device exhibits an excellent retention of cell specific capacitance and coulombic
efficiency of 97 % and 94 %, respectively, over 10,000 continuous GCD cycles,
indicating an excellent rate capability as well as a promising power management.
To investigate the material's electrochemical durability, a detailed EIS study
has been carried out using both, 3-electrode, and 2-electrode cell configurations,
before and after long cycling test (over 10,000 continuous GCD cycles). Our thorough
experimentation delivers satisfactory results and has been explained in detail
in the manuscript. Hereby, we propose that the EIS technique can be adopted for
investigating materials' electrochemical stability, in addition to long CV and
GCD cycles in the field of supercapacitors and battery research.
acknowledgement: "This work was supported by Korea Institute of Energy Technology
Evaluation and Planning (KETEP); and Ministry of Trade, Industry & Energy (MOTIE),
Republic of Korea (Grant No. \r\n20210501010020)."
article_number: '111464'
article_processing_charge: No
article_type: original
author:
- first_name: Neelima
full_name: Mahato, Neelima
last_name: Mahato
- first_name: Saurabh
full_name: Singh, Saurabh
id: 12d625da-9cb3-11ed-9667-af09d37d3f0a
last_name: Singh
orcid: 0000-0003-2209-5269
- first_name: T. V.M.
full_name: Sreekanth, T. V.M.
last_name: Sreekanth
- first_name: Kisoo
full_name: Yoo, Kisoo
last_name: Yoo
- first_name: Jonghoon
full_name: Kim, Jonghoon
last_name: Kim
citation:
ama: 'Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. Polycrystalline phases engineered
in-situ in polyaniline-graphene composite evoluting an exceptional stability and
high charge storage capacity: An EIS investigative approach to evaluate material’s
stability. Journal of Energy Storage. 2024;88. doi:10.1016/j.est.2024.111464'
apa: 'Mahato, N., Singh, S., Sreekanth, T. V. M., Yoo, K., & Kim, J. (2024).
Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting
an exceptional stability and high charge storage capacity: An EIS investigative
approach to evaluate material’s stability. Journal of Energy Storage. Elsevier.
https://doi.org/10.1016/j.est.2024.111464'
chicago: 'Mahato, Neelima, Saurabh Singh, T. V.M. Sreekanth, Kisoo Yoo, and Jonghoon
Kim. “Polycrystalline Phases Engineered In-Situ in Polyaniline-Graphene Composite
Evoluting an Exceptional Stability and High Charge Storage Capacity: An EIS Investigative
Approach to Evaluate Material’s Stability.” Journal of Energy Storage.
Elsevier, 2024. https://doi.org/10.1016/j.est.2024.111464.'
ieee: 'N. Mahato, S. Singh, T. V. M. Sreekanth, K. Yoo, and J. Kim, “Polycrystalline
phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional
stability and high charge storage capacity: An EIS investigative approach to evaluate
material’s stability,” Journal of Energy Storage, vol. 88. Elsevier, 2024.'
ista: 'Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. 2024. Polycrystalline phases
engineered in-situ in polyaniline-graphene composite evoluting an exceptional
stability and high charge storage capacity: An EIS investigative approach to evaluate
material’s stability. Journal of Energy Storage. 88, 111464.'
mla: 'Mahato, Neelima, et al. “Polycrystalline Phases Engineered In-Situ in Polyaniline-Graphene
Composite Evoluting an Exceptional Stability and High Charge Storage Capacity:
An EIS Investigative Approach to Evaluate Material’s Stability.” Journal of
Energy Storage, vol. 88, 111464, Elsevier, 2024, doi:10.1016/j.est.2024.111464.'
short: N. Mahato, S. Singh, T.V.M. Sreekanth, K. Yoo, J. Kim, Journal of Energy
Storage 88 (2024).
date_created: 2024-04-14T22:01:01Z
date_published: 2024-05-30T00:00:00Z
date_updated: 2025-09-04T13:38:27Z
day: '30'
department:
- _id: MaIb
doi: 10.1016/j.est.2024.111464
external_id:
isi:
- '001287584100001'
intvolume: ' 88'
isi: 1
language:
- iso: eng
month: '05'
oa_version: None
publication: Journal of Energy Storage
publication_identifier:
eissn:
- 2352-152X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Polycrystalline phases engineered in-situ in polyaniline-graphene composite
evoluting an exceptional stability and high charge storage capacity: An EIS investigative
approach to evaluate material''s stability'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 88
year: '2024'
...
---
_id: '15315'
abstract:
- lang: eng
text: Single and collective cell migration are fundamental processes critical for
physiological phenomena ranging from embryonic development and immune response
to wound healing and cancer metastasis. To understand cell migration from a physical
perspective, a broad variety of models for the underlying physical mechanisms
that govern cell motility have been developed. A key challenge in the development
of such models is how to connect them to experimental observations, which often
exhibit complex stochastic behaviours. In this review, we discuss recent advances
in data-driven theoretical approaches that directly connect with experimental
data to infer dynamical models of stochastic cell migration. Leveraging advances
in nanofabrication, image analysis, and tracking technology, experimental studies
now provide unprecedented large datasets on cellular dynamics. In parallel, theoretical
efforts have been directed towards integrating such datasets into physical models
from the single cell to the tissue scale with the aim of conceptualising the emergent
behaviour of cells. We first review how this inference problem has been addressed
in both freely migrating and confined cells. Next, we discuss why these dynamics
typically take the form of underdamped stochastic equations of motion, and how
such equations can be inferred from data. We then review applications of data-driven
inference and machine learning approaches to heterogeneity in cell behaviour,
subcellular degrees of freedom, and to the collective dynamics of multicellular
systems. Across these applications, we emphasise how data-driven methods can be
integrated with physical active matter models of migrating cells, and help reveal
how underlying molecular mechanisms control cell behaviour. Together, these data-driven
approaches are a promising avenue for building physical models of cell migration
directly from experimental data, and for providing conceptual links between different
length-scales of description.
acknowledgement: This work was supported by the Deutsche Forschungsgemeinschaft (German
Research Foundation)—Project-ID 201269156—SFB 1032 (Project B12). D B B was supported
by an NOMIS Fellowship and an EMBO Fellowship (ALTF 343-2022). We thank Joachim
Rädler, Alexandra Fink, Erwin Frey, Pierre Ronceray, Ricard Alert, Edouard Hannezo,
Henrik Flyvbjerg, Ulrich Schwarz, Joshua Shaevitz, Greg Stephens, Andrea Cavagna,
Grzegorz Gradziuk, Fridtjof Brauns, Nikolas Claussen, Tom Brandstätter, Johannes
Flommersfeld, Christoph Schreiber, Nicolas Arlt, Matthew Schmitt, Joris Messelink,
Federico Gnesotto, Federica Mura, Bram Hoogland, Manon Wigbers, Isabella Graf, Jessica
Lober, and many others for inspiring discussions. We also thank Claudia Flandoli
for the artwork in figures 1, 5, 8 and 9.
article_number: '056601'
article_processing_charge: Yes (in subscription journal)
article_type: review
arxiv: 1
author:
- first_name: David
full_name: Brückner, David
id: e1e86031-6537-11eb-953a-f7ab92be508d
last_name: Brückner
orcid: 0000-0001-7205-2975
- first_name: Chase P.
full_name: Broedersz, Chase P.
last_name: Broedersz
citation:
ama: 'Brückner D, Broedersz CP. Learning dynamical models of single and collective
cell migration: a review. Reports on Progress in Physics. 2024;87(5). doi:10.1088/1361-6633/ad36d2'
apa: 'Brückner, D., & Broedersz, C. P. (2024). Learning dynamical models of
single and collective cell migration: a review. Reports on Progress in Physics.
IOP Publishing. https://doi.org/10.1088/1361-6633/ad36d2'
chicago: 'Brückner, David, and Chase P. Broedersz. “Learning Dynamical Models of
Single and Collective Cell Migration: A Review.” Reports on Progress in Physics.
IOP Publishing, 2024. https://doi.org/10.1088/1361-6633/ad36d2.'
ieee: 'D. Brückner and C. P. Broedersz, “Learning dynamical models of single and
collective cell migration: a review,” Reports on Progress in Physics, vol.
87, no. 5. IOP Publishing, 2024.'
ista: 'Brückner D, Broedersz CP. 2024. Learning dynamical models of single and collective
cell migration: a review. Reports on Progress in Physics. 87(5), 056601.'
mla: 'Brückner, David, and Chase P. Broedersz. “Learning Dynamical Models of Single
and Collective Cell Migration: A Review.” Reports on Progress in Physics,
vol. 87, no. 5, 056601, IOP Publishing, 2024, doi:10.1088/1361-6633/ad36d2.'
short: D. Brückner, C.P. Broedersz, Reports on Progress in Physics 87 (2024).
corr_author: '1'
date_created: 2024-04-14T22:01:01Z
date_published: 2024-04-04T00:00:00Z
date_updated: 2025-09-04T13:39:07Z
day: '04'
ddc:
- '530'
department:
- _id: EdHa
doi: 10.1088/1361-6633/ad36d2
external_id:
arxiv:
- '2309.00545'
isi:
- '001196692400001'
pmid:
- '38518358'
file:
- access_level: open_access
checksum: c5910078230ade20f4dd83592e862a72
content_type: application/pdf
creator: dernst
date_created: 2024-08-20T11:00:03Z
date_updated: 2024-08-20T11:00:03Z
file_id: '17451'
file_name: 2024_ReportPhysics_Brueckner.pdf
file_size: 4376898
relation: main_file
success: 1
file_date_updated: 2024-08-20T11:00:03Z
has_accepted_license: '1'
intvolume: ' 87'
isi: 1
issue: '5'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
grant_number: ALTF 343-2022
name: A mechano-chemical theory for stem cell fate decisions in organoid development
publication: Reports on Progress in Physics
publication_identifier:
eissn:
- 1361-6633
issn:
- 0034-4885
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Learning dynamical models of single and collective cell migration: a review'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 87
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '15316'
abstract:
- lang: eng
text: Genomic DNA that resides in the nuclei of mammalian neurons can be as old
as the organism itself. The life span of nuclear RNAs, which are critical for
proper chromatin architecture and transcription regulation, has not been determined
in adult tissues. In this work, we identified and characterized nuclear RNAs that
do not turn over for at least 2 years in a subset of postnatally born cells in
the mouse brain. These long-lived RNAs were stably retained in nuclei in a neural
cell type–specific manner and were required for the maintenance of heterochromatin.
Thus, the life span of neural cells may depend on both the molecular longevity
of DNA for the storage of genetic information and also the extreme stability of
RNA for the functional organization of chromatin.
acknowledgement: 'European Research Council: ERC-2018-STG, 804468 EAGER; European
Research Council: ERC-2023-COG, 101125034 NEUTIME; Deutsche Forschungsgemeinschaft:
TO1347/4-1; Boehringer Ingelheim Stiftung; Deutsches Zentrum für Neurodegenerative
Erkrankungen'
article_processing_charge: No
article_type: original
author:
- first_name: Sara
full_name: Zocher, Sara
last_name: Zocher
- first_name: Asako
full_name: Mccloskey, Asako
last_name: Mccloskey
- first_name: Anne
full_name: Karasinsky, Anne
last_name: Karasinsky
- first_name: Roberta
full_name: Schulte, Roberta
last_name: Schulte
- first_name: Ulrike
full_name: Friedrich, Ulrike
last_name: Friedrich
- first_name: Mathias
full_name: Lesche, Mathias
last_name: Lesche
- first_name: Nicole
full_name: Rund, Nicole
last_name: Rund
- first_name: Fred H.
full_name: Gage, Fred H.
last_name: Gage
- first_name: Martin W
full_name: Hetzer, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: Hetzer
orcid: 0000-0002-2111-992X
- first_name: Tomohisa
full_name: Toda, Tomohisa
last_name: Toda
citation:
ama: Zocher S, Mccloskey A, Karasinsky A, et al. Lifelong persistence of nuclear
RNAs in the mouse brain. Science. 2024;384(6691):53-59. doi:10.1126/science.adf3481
apa: Zocher, S., Mccloskey, A., Karasinsky, A., Schulte, R., Friedrich, U., Lesche,
M., … Toda, T. (2024). Lifelong persistence of nuclear RNAs in the mouse brain.
Science. AAAS. https://doi.org/10.1126/science.adf3481
chicago: Zocher, Sara, Asako Mccloskey, Anne Karasinsky, Roberta Schulte, Ulrike
Friedrich, Mathias Lesche, Nicole Rund, Fred H. Gage, Martin Hetzer, and Tomohisa
Toda. “Lifelong Persistence of Nuclear RNAs in the Mouse Brain.” Science.
AAAS, 2024. https://doi.org/10.1126/science.adf3481.
ieee: S. Zocher et al., “Lifelong persistence of nuclear RNAs in the mouse
brain,” Science, vol. 384, no. 6691. AAAS, pp. 53–59, 2024.
ista: Zocher S, Mccloskey A, Karasinsky A, Schulte R, Friedrich U, Lesche M, Rund
N, Gage FH, Hetzer M, Toda T. 2024. Lifelong persistence of nuclear RNAs in the
mouse brain. Science. 384(6691), 53–59.
mla: Zocher, Sara, et al. “Lifelong Persistence of Nuclear RNAs in the Mouse Brain.”
Science, vol. 384, no. 6691, AAAS, 2024, pp. 53–59, doi:10.1126/science.adf3481.
short: S. Zocher, A. Mccloskey, A. Karasinsky, R. Schulte, U. Friedrich, M. Lesche,
N. Rund, F.H. Gage, M. Hetzer, T. Toda, Science 384 (2024) 53–59.
corr_author: '1'
date_created: 2024-04-14T22:01:01Z
date_published: 2024-04-04T00:00:00Z
date_updated: 2025-09-04T13:39:58Z
day: '04'
department:
- _id: MaHe
doi: 10.1126/science.adf3481
external_id:
isi:
- '001253335100031'
pmid:
- '38574132'
intvolume: ' 384'
isi: 1
issue: '6691'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7615865
month: '04'
oa: 1
oa_version: Submitted Version
page: 53-59
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: AAAS
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/nerve-cells-old-at-heart/
scopus_import: '1'
status: public
title: Lifelong persistence of nuclear RNAs in the mouse brain
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 384
year: '2024'
...
---
_id: '15317'
abstract:
- lang: eng
text: 'We consider the open symmetric exclusion (SEP) and inclusion (SIP) processes
on a bounded Lipschitz domain Ω, with both fast and slow boundary. For the random
walks on Ω dual to SEP/SIP we establish: a functional-CLT-type convergence to
the Brownian motion on Ω with either Neumann (slow boundary), Dirichlet (fast
boundary), or Robin (at criticality) boundary conditions; the discrete-to-continuum
convergence of the corresponding harmonic profiles. As a consequence, we rigorously
derive the hydrodynamic and hydrostatic limits for SEP/SIP on Ω, and analyze their
stationary nonequilibrium fluctuations. All scaling limit results for SEP/SIP
concern finite-dimensional distribution convergence only, as our duality techniques
do not require to establish tightness for the fields associated to the particle
systems.'
acknowledgement: "The first author gratefully acknowledges funding by the Austrian
Science Fund (FWF) grant F65, by the European Research Council (ERC, grant agreement
No 716117, awarded to Prof. Dr. Jan Maas). He also gratefully acknowledges funding
of his current position by the Austrian Science Fund (FWF) grant ESPRIT 208.\r\nThe
second author gratefully acknowledges funding by the Hausdorff Center for Mathematics
at the University of Bonn. Part of this work was completed while this author was
a member of the Institute of Science and Technology Austria. He gratefully acknowledges
funding of his position at that time by the Austrian Science Fund (FWF) grants F65
and W1245.\r\nThe third author gratefully acknowledges funding by the Lise Meitner
fellowship, Austrian Science Fund (FWF): M3211. Part of this work was completed
while funded by the European Union’s Horizon 2020 research and innovation programme
under the Marie-Skłodowska-Curie grant agreement No. 754411."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
full_name: Dello Schiavo, Lorenzo
id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
last_name: Dello Schiavo
orcid: 0000-0002-9881-6870
- first_name: Lorenzo
full_name: Portinale, Lorenzo
id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
last_name: Portinale
- first_name: Federico
full_name: Sau, Federico
id: E1836206-9F16-11E9-8814-AEFDE5697425
last_name: Sau
citation:
ama: Dello Schiavo L, Portinale L, Sau F. Scaling limits of random walks, harmonic
profiles, and stationary nonequilibrium states in Lipschitz domains. Annals
of Applied Probability. 2024;34(2):1789-1845. doi:10.1214/23-AAP2007
apa: Dello Schiavo, L., Portinale, L., & Sau, F. (2024). Scaling limits of random
walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains.
Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/23-AAP2007
chicago: Dello Schiavo, Lorenzo, Lorenzo Portinale, and Federico Sau. “Scaling Limits
of Random Walks, Harmonic Profiles, and Stationary Nonequilibrium States in Lipschitz
Domains.” Annals of Applied Probability. Institute of Mathematical Statistics,
2024. https://doi.org/10.1214/23-AAP2007.
ieee: L. Dello Schiavo, L. Portinale, and F. Sau, “Scaling limits of random walks,
harmonic profiles, and stationary nonequilibrium states in Lipschitz domains,”
Annals of Applied Probability, vol. 34, no. 2. Institute of Mathematical
Statistics, pp. 1789–1845, 2024.
ista: Dello Schiavo L, Portinale L, Sau F. 2024. Scaling limits of random walks,
harmonic profiles, and stationary nonequilibrium states in Lipschitz domains.
Annals of Applied Probability. 34(2), 1789–1845.
mla: Dello Schiavo, Lorenzo, et al. “Scaling Limits of Random Walks, Harmonic Profiles,
and Stationary Nonequilibrium States in Lipschitz Domains.” Annals of Applied
Probability, vol. 34, no. 2, Institute of Mathematical Statistics, 2024, pp.
1789–845, doi:10.1214/23-AAP2007.
short: L. Dello Schiavo, L. Portinale, F. Sau, Annals of Applied Probability 34
(2024) 1789–1845.
corr_author: '1'
date_created: 2024-04-14T22:01:02Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-09-04T13:36:00Z
day: '01'
department:
- _id: JaMa
doi: 10.1214/23-AAP2007
ec_funded: 1
external_id:
arxiv:
- '2112.14196'
isi:
- '001198623200016'
intvolume: ' 34'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2112.14196
month: '04'
oa: 1
oa_version: Preprint
page: 1789-1845
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
- _id: 3490b268-11ca-11ed-8bc3-e0ad03f48839
grant_number: M03211
name: Reaching consensus in heterogeneous random opinion dynamics
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 34dbf174-11ca-11ed-8bc3-afe9d43d4b9c
grant_number: E208
name: Configuration Spaces over Non-Smooth Spaces
- _id: 260788DE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: W1245
name: Dissipation and dispersion in nonlinear partial differential equations
publication: Annals of Applied Probability
publication_identifier:
issn:
- 1050-5164
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium
states in Lipschitz domains
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 34
year: '2024'
...
---
_id: '15318'
abstract:
- lang: eng
text: We consider a gas of N weakly interacting bosons in the ground state. Such
gases exhibit Bose–Einstein condensation. The binding energy is defined as the
energy it takes to remove one particle from the gas. In this article, we prove
an asymptotic expansion for the binding energy, and compute the first orders explicitly
for the homogeneous gas. Our result addresses in particular a conjecture by Nam
(Lett Math Phys 108(1):141–159, 2018), and provides an asymptotic expansion of
the ionization energy of bosonic atoms.
acknowledgement: "It is a pleasure to thank Phan Thành Nam for helpful discussions
on bosonic atoms. L.B. was supported by the German Research Foundation within the
Munich Center of Quantum Science and Technology (EXC 2111). N.L. gratefully acknowledges
support from the Swiss National Science Foundation through the NCCR SwissMap and
funding from the European Union’s Horizon 2020 research and innovation programme
under the Marie Skłodowska-Curie Grant agreement No 101024712. S.P. acknowledges
funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—Project
number 512258249.\r\nOpen Access funding enabled and organized by Projekt DEAL."
article_number: '48'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lea
full_name: Bossmann, Lea
id: A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425
last_name: Bossmann
orcid: 0000-0002-6854-1343
- first_name: Nikolai K
full_name: Leopold, Nikolai K
id: 4BC40BEC-F248-11E8-B48F-1D18A9856A87
last_name: Leopold
orcid: 0000-0002-0495-6822
- first_name: David Johannes
full_name: Mitrouskas, David Johannes
id: cbddacee-2b11-11eb-a02e-a2e14d04e52d
last_name: Mitrouskas
- first_name: Sören P
full_name: Petrat, Sören P
id: 40AC02DC-F248-11E8-B48F-1D18A9856A87
last_name: Petrat
orcid: 0000-0002-9166-5889
citation:
ama: Bossmann L, Leopold NK, Mitrouskas DJ, Petrat SP. A note on the binding energy
for Bosons in the mean-field limit. Journal of Statistical Physics. 2024;191(4).
doi:10.1007/s10955-024-03260-5
apa: Bossmann, L., Leopold, N. K., Mitrouskas, D. J., & Petrat, S. P. (2024).
A note on the binding energy for Bosons in the mean-field limit. Journal of
Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-024-03260-5
chicago: Bossmann, Lea, Nikolai K Leopold, David Johannes Mitrouskas, and Sören
P Petrat. “A Note on the Binding Energy for Bosons in the Mean-Field Limit.” Journal
of Statistical Physics. Springer Nature, 2024. https://doi.org/10.1007/s10955-024-03260-5.
ieee: L. Bossmann, N. K. Leopold, D. J. Mitrouskas, and S. P. Petrat, “A note on
the binding energy for Bosons in the mean-field limit,” Journal of Statistical
Physics, vol. 191, no. 4. Springer Nature, 2024.
ista: Bossmann L, Leopold NK, Mitrouskas DJ, Petrat SP. 2024. A note on the binding
energy for Bosons in the mean-field limit. Journal of Statistical Physics. 191(4),
48.
mla: Bossmann, Lea, et al. “A Note on the Binding Energy for Bosons in the Mean-Field
Limit.” Journal of Statistical Physics, vol. 191, no. 4, 48, Springer Nature,
2024, doi:10.1007/s10955-024-03260-5.
short: L. Bossmann, N.K. Leopold, D.J. Mitrouskas, S.P. Petrat, Journal of Statistical
Physics 191 (2024).
date_created: 2024-04-14T22:01:02Z
date_published: 2024-04-06T00:00:00Z
date_updated: 2025-09-04T13:36:49Z
day: '06'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s10955-024-03260-5
external_id:
arxiv:
- '2307.13115'
isi:
- '001197663100002'
file:
- access_level: open_access
checksum: 839242a9ec1c01158112de25f196e60d
content_type: application/pdf
creator: dernst
date_created: 2024-04-16T11:09:37Z
date_updated: 2024-04-16T11:09:37Z
file_id: '15325'
file_name: 2024_JourStatPhysics_Bossmann.pdf
file_size: 398665
relation: main_file
success: 1
file_date_updated: 2024-04-16T11:09:37Z
has_accepted_license: '1'
intvolume: ' 191'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: Journal of Statistical Physics
publication_identifier:
eissn:
- 1572-9613
issn:
- 0022-4715
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A note on the binding energy for Bosons in the mean-field limit
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 191
year: '2024'
...
---
_id: '15319'
abstract:
- lang: eng
text: Exocyst component of 70-kDa (EXO70) proteins are constituents of the exocyst
complex implicated in vesicle tethering during exocytosis. MILDEW RESISTANCE LOCUS
O (MLO) proteins are plant-specific calcium channels and some MLO isoforms enable
fungal powdery mildew pathogenesis. We here detected an unexpected phenotypic
overlap of Arabidopsis thaliana exo70H4 and mlo2 mlo6 mlo12 triple mutant plants
regarding the biogenesis of leaf trichome secondary cell walls. Biochemical and
Fourier transform infrared spectroscopic analyses corroborated deficiencies in
the composition of trichome cell walls in these mutants. Transgenic lines expressing
fluorophore-tagged EXO70H4 and MLO exhibited extensive colocalization of these
proteins. Furthermore, mCherry-EXO70H4 mislocalized in trichomes of the mlo triple
mutant and, vice versa, MLO6-GFP mislocalized in trichomes of the exo70H4 mutant.
Expression of GFP-marked PMR4 callose synthase, a known cargo of EXO70H4-dependent
exocytosis, revealed reduced cell wall delivery of GFP-PMR4 in trichomes of mlo
triple mutant plants. In vivo protein–protein interaction assays in plant and
yeast cells uncovered isoform-preferential interactions between EXO70.2 subfamily
members and MLO proteins. Finally, exo70H4 and mlo6 mutants, when combined, showed
synergistically enhanced resistance to powdery mildew attack. Taken together,
our data point to an isoform-specific interplay of EXO70 and MLO proteins in the
modulation of trichome cell wall biogenesis and powdery mildew susceptibility.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jan W.
full_name: Huebbers, Jan W.
last_name: Huebbers
- first_name: George A.
full_name: Caldarescu, George A.
last_name: Caldarescu
- first_name: Zdeňka
full_name: Kubátová, Zdeňka
last_name: Kubátová
- first_name: Peter
full_name: Sabol, Peter
last_name: Sabol
- first_name: Sophie C.J.
full_name: Levecque, Sophie C.J.
last_name: Levecque
- first_name: Hannah
full_name: Kuhn, Hannah
last_name: Kuhn
- first_name: Ivan
full_name: Kulich, Ivan
id: 57a1567c-8314-11eb-9063-c9ddc3451a54
last_name: Kulich
- first_name: Anja
full_name: Reinstädler, Anja
last_name: Reinstädler
- first_name: Kim
full_name: Büttgen, Kim
last_name: Büttgen
- first_name: Alba
full_name: Manga-Robles, Alba
last_name: Manga-Robles
- first_name: Hugo
full_name: Mélida, Hugo
last_name: Mélida
- first_name: Markus
full_name: Pauly, Markus
last_name: Pauly
- first_name: Ralph
full_name: Panstruga, Ralph
last_name: Panstruga
- first_name: Viktor
full_name: Žárský, Viktor
last_name: Žárský
citation:
ama: Huebbers JW, Caldarescu GA, Kubátová Z, et al. Interplay of EXO70 and MLO proteins
modulates trichome cell wall composition and susceptibility to powdery mildew.
Plant Cell. 2024;36(4):1007-1035. doi:10.1093/plcell/koad319
apa: Huebbers, J. W., Caldarescu, G. A., Kubátová, Z., Sabol, P., Levecque, S. C.
J., Kuhn, H., … Žárský, V. (2024). Interplay of EXO70 and MLO proteins modulates
trichome cell wall composition and susceptibility to powdery mildew. Plant
Cell. Oxford University Press. https://doi.org/10.1093/plcell/koad319
chicago: Huebbers, Jan W., George A. Caldarescu, Zdeňka Kubátová, Peter Sabol, Sophie
C.J. Levecque, Hannah Kuhn, Ivan Kulich, et al. “Interplay of EXO70 and MLO Proteins
Modulates Trichome Cell Wall Composition and Susceptibility to Powdery Mildew.”
Plant Cell. Oxford University Press, 2024. https://doi.org/10.1093/plcell/koad319.
ieee: J. W. Huebbers et al., “Interplay of EXO70 and MLO proteins modulates
trichome cell wall composition and susceptibility to powdery mildew,” Plant
Cell, vol. 36, no. 4. Oxford University Press, pp. 1007–1035, 2024.
ista: Huebbers JW, Caldarescu GA, Kubátová Z, Sabol P, Levecque SCJ, Kuhn H, Kulich
I, Reinstädler A, Büttgen K, Manga-Robles A, Mélida H, Pauly M, Panstruga R, Žárský
V. 2024. Interplay of EXO70 and MLO proteins modulates trichome cell wall composition
and susceptibility to powdery mildew. Plant Cell. 36(4), 1007–1035.
mla: Huebbers, Jan W., et al. “Interplay of EXO70 and MLO Proteins Modulates Trichome
Cell Wall Composition and Susceptibility to Powdery Mildew.” Plant Cell,
vol. 36, no. 4, Oxford University Press, 2024, pp. 1007–35, doi:10.1093/plcell/koad319.
short: J.W. Huebbers, G.A. Caldarescu, Z. Kubátová, P. Sabol, S.C.J. Levecque, H.
Kuhn, I. Kulich, A. Reinstädler, K. Büttgen, A. Manga-Robles, H. Mélida, M. Pauly,
R. Panstruga, V. Žárský, Plant Cell 36 (2024) 1007–1035.
date_created: 2024-04-14T22:01:02Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2024-04-17T07:01:21Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1093/plcell/koad319
external_id:
pmid:
- '38124479'
file:
- access_level: open_access
checksum: f9994d2e4748feec24c992b39871aba1
content_type: application/pdf
creator: dernst
date_created: 2024-04-17T06:57:54Z
date_updated: 2024-04-17T06:57:54Z
file_id: '15326'
file_name: 2024_PlantCell_Huebbers.pdf
file_size: 2866098
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success: 1
file_date_updated: 2024-04-17T06:57:54Z
has_accepted_license: '1'
intvolume: ' 36'
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1007-1035
pmid: 1
publication: Plant Cell
publication_identifier:
eissn:
- 1532-298X
issn:
- 1040-4651
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Interplay of EXO70 and MLO proteins modulates trichome cell wall composition
and susceptibility to powdery mildew
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2024'
...
---
DOAJ_listed: '1'
_id: '15320'
abstract:
- lang: eng
text: Josephson diodes are superconducting elements that show an asymmetry in the
critical current depending on the direction of the current. Here, we theoretically
explore how an alternating current bias can tune the response of such a diode.
We show that for slow driving there is always a regime where the system can only
carry zero-voltage dc current in one direction, thus effectively behaving as an
ideal Josephson diode. Under fast driving, the diode efficiency is also tunable,
although the ideal regime cannot be reached in this case. We also investigate
the residual dissipation due to the time-dependent current bias and show that
it remains small. All our conclusions are solely based on the critical current
asymmetry of the junction, and are thus compatible with any Josephson diode.
acknowledgement: "We acknowledge support from research grants Spanish CM Talento Program
(Project No. 2022-T1/IND-24070), Spanish Ministry of Science, innovation, and Universities
through Grant No. PID2022-140552NA-I00, Swedish Research Council under Grant Agreement
No. 2020-03412, the European Research Council (ERC) under the European Union’s Horizon
2020 research and innovation programme under Grant Agreement No. 856526, Nanolund,
FWF Project with [82],\r\nand Microsoft Corporation. "
article_number: L022002
article_processing_charge: Yes
article_type: letter_note
author:
- first_name: Rubén
full_name: Seoane Souto, Rubén
last_name: Seoane Souto
- first_name: Martin
full_name: Leijnse, Martin
last_name: Leijnse
- first_name: Constantin
full_name: Schrade, Constantin
last_name: Schrade
- first_name: Marco
full_name: Valentini, Marco
id: C0BB2FAC-D767-11E9-B658-BC13E6697425
last_name: Valentini
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
- first_name: Jeroen
full_name: Danon, Jeroen
last_name: Danon
citation:
ama: Seoane Souto R, Leijnse M, Schrade C, Valentini M, Katsaros G, Danon J. Tuning
the Josephson diode response with an ac current. Physical Review Research.
2024;6(2). doi:10.1103/PhysRevResearch.6.L022002
apa: Seoane Souto, R., Leijnse, M., Schrade, C., Valentini, M., Katsaros, G., &
Danon, J. (2024). Tuning the Josephson diode response with an ac current. Physical
Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.6.L022002
chicago: Seoane Souto, Rubén, Martin Leijnse, Constantin Schrade, Marco Valentini,
Georgios Katsaros, and Jeroen Danon. “Tuning the Josephson Diode Response with
an Ac Current.” Physical Review Research. American Physical Society, 2024.
https://doi.org/10.1103/PhysRevResearch.6.L022002.
ieee: R. Seoane Souto, M. Leijnse, C. Schrade, M. Valentini, G. Katsaros, and J.
Danon, “Tuning the Josephson diode response with an ac current,” Physical Review
Research, vol. 6, no. 2. American Physical Society, 2024.
ista: Seoane Souto R, Leijnse M, Schrade C, Valentini M, Katsaros G, Danon J. 2024.
Tuning the Josephson diode response with an ac current. Physical Review Research.
6(2), L022002.
mla: Seoane Souto, Rubén, et al. “Tuning the Josephson Diode Response with an Ac
Current.” Physical Review Research, vol. 6, no. 2, L022002, American Physical
Society, 2024, doi:10.1103/PhysRevResearch.6.L022002.
short: R. Seoane Souto, M. Leijnse, C. Schrade, M. Valentini, G. Katsaros, J. Danon,
Physical Review Research 6 (2024).
date_created: 2024-04-14T22:01:02Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-05-14T09:31:50Z
day: '01'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1103/PhysRevResearch.6.L022002
file:
- access_level: open_access
checksum: 7b9cb3b17d89f392bd582e30d7a72a29
content_type: application/pdf
creator: dernst
date_created: 2024-04-17T07:14:53Z
date_updated: 2024-04-17T07:14:53Z
file_id: '15327'
file_name: 2024_PhysReviewResearch_Souto.pdf
file_size: 1073544
relation: main_file
success: 1
file_date_updated: 2024-04-17T07:14:53Z
has_accepted_license: '1'
intvolume: ' 6'
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: Physical Review Research
publication_identifier:
eissn:
- 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tuning the Josephson diode response with an ac current
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2024'
...
---
_id: '15321'
abstract:
- lang: eng
text: Boolean Networks (BNs) are widely used as a modeling formalism in several
domains, notably systems biology and computer science. A fundamental problem in
BN analysis is the enumeration of trap spaces, which are hypercubes in the state
space that cannot be escaped once entered. Several methods have been proposed
for enumerating trap spaces, however they often suffer from scalability and efficiency
issues, particularly for large and complex models. To our knowledge, the most
efficient and recent methods for the trap space enumeration all rely on Answer
Set Programming (ASP), which has been widely applied to the analysis of BNs. Motivated
by these considerations, our work proposes a new method for enumerating trap spaces
in BNs using ASP. We evaluate the method on a mix of 250+ real-world and 400+
randomly generated BNs, showing that it enables analysis of models beyond the
capabilities of existing tools (namely pyboolnet, mpbn, trappist, and trapmvn).
acknowledgement: This work was supported by Institut Carnot STAR, Marseille, France
and by the European Union’s Horizon 2020 research and innovation programme under
the Marie Skłodowska-Curie Grant Agreement No. 101034413.
article_processing_charge: No
author:
- first_name: Giang
full_name: Trinh, Giang
last_name: Trinh
- first_name: Belaid
full_name: Benhamou, Belaid
last_name: Benhamou
- first_name: Samuel
full_name: Pastva, Samuel
id: 07c5ea74-f61c-11ec-a664-aa7c5d957b2b
last_name: Pastva
orcid: 0000-0003-1993-0331
- first_name: Sylvain
full_name: Soliman, Sylvain
last_name: Soliman
citation:
ama: 'Trinh G, Benhamou B, Pastva S, Soliman S. Scalable enumeration of trap spaces
in boolean networks via answer set programming. In: Proceedings of the 38th
AAAI Conference on Artificial Intelligence. Vol 38. Association for the Advancement
of Artificial Intelligence; 2024:10714-10722. doi:10.1609/aaai.v38i9.28943'
apa: Trinh, G., Benhamou, B., Pastva, S., & Soliman, S. (2024). Scalable enumeration
of trap spaces in boolean networks via answer set programming. In Proceedings
of the 38th AAAI Conference on Artificial Intelligence (Vol. 38, pp. 10714–10722).
Association for the Advancement of Artificial Intelligence. https://doi.org/10.1609/aaai.v38i9.28943
chicago: Trinh, Giang, Belaid Benhamou, Samuel Pastva, and Sylvain Soliman. “Scalable
Enumeration of Trap Spaces in Boolean Networks via Answer Set Programming.” In
Proceedings of the 38th AAAI Conference on Artificial Intelligence, 38:10714–22.
Association for the Advancement of Artificial Intelligence, 2024. https://doi.org/10.1609/aaai.v38i9.28943.
ieee: G. Trinh, B. Benhamou, S. Pastva, and S. Soliman, “Scalable enumeration of
trap spaces in boolean networks via answer set programming,” in Proceedings
of the 38th AAAI Conference on Artificial Intelligence, 2024, vol. 38, no.
9, pp. 10714–10722.
ista: Trinh G, Benhamou B, Pastva S, Soliman S. 2024. Scalable enumeration of trap
spaces in boolean networks via answer set programming. Proceedings of the 38th
AAAI Conference on Artificial Intelligence. vol. 38, 10714–10722.
mla: Trinh, Giang, et al. “Scalable Enumeration of Trap Spaces in Boolean Networks
via Answer Set Programming.” Proceedings of the 38th AAAI Conference on Artificial
Intelligence, vol. 38, no. 9, Association for the Advancement of Artificial
Intelligence, 2024, pp. 10714–22, doi:10.1609/aaai.v38i9.28943.
short: G. Trinh, B. Benhamou, S. Pastva, S. Soliman, in:, Proceedings of the 38th
AAAI Conference on Artificial Intelligence, Association for the Advancement of
Artificial Intelligence, 2024, pp. 10714–10722.
date_created: 2024-04-14T22:01:02Z
date_published: 2024-03-25T00:00:00Z
date_updated: 2026-06-18T17:48:08Z
day: '25'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1609/aaai.v38i9.28943
ec_funded: 1
intvolume: ' 38'
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://amu.hal.science/hal-04523118/
month: '03'
oa: 1
oa_version: Published Version
page: 10714-10722
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Proceedings of the 38th AAAI Conference on Artificial Intelligence
publication_identifier:
eissn:
- 2374-3468
isbn:
- '1577358872'
issn:
- 2159-5399
publication_status: published
publisher: Association for the Advancement of Artificial Intelligence
quality_controlled: '1'
scopus_import: '1'
status: public
title: Scalable enumeration of trap spaces in boolean networks via answer set programming
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 38
year: '2024'
...
---
_id: '15322'
abstract:
- lang: eng
text: The tendency of materials to order in triboelectric series has prompted suggestions
that contact electrification might have a single, unified underlying description.
However, the possibility of “triboelectric cycles,” i.e., series that loop back
onto themselves, is seemingly at odds with such a coherent description. In this
work, we propose that if multiple charge carrying species are at play, both triboelectric
series and cycles are possible. We show how series arise naturally if only a single
charge carrier species is involved and if the driving mechanism is approach toward
thermodynamic equilibrium, and simultaneously, that cycles are forbidden under
such conditions. Suspecting multiple carriers might relax the situation, we affirm
this is the case by explicit construction of a cycle involving two carriers, and
then extend this to show how more complex cycles emerge. Our work highlights the
importance of series and cycles towards determining the underlying mechanism(s)
and carrier(s) in contact electrification.
article_number: L032108
article_processing_charge: No
article_type: letter_note
author:
- first_name: Juan Carlos A
full_name: Sobarzo Ponce, Juan Carlos A
id: 4B807D68-AE37-11E9-AC72-31CAE5697425
last_name: Sobarzo Ponce
- first_name: Scott R
full_name: Waitukaitis, Scott R
id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
last_name: Waitukaitis
orcid: 0000-0002-2299-3176
citation:
ama: Sobarzo Ponce JCA, Waitukaitis SR. Multiple charge carrier species as a possible
cause for triboelectric cycles. Physical Review E. 2024;109(3). doi:10.1103/PhysRevE.109.L032108
apa: Sobarzo Ponce, J. C. A., & Waitukaitis, S. R. (2024). Multiple charge carrier
species as a possible cause for triboelectric cycles. Physical Review E.
American Physical Society. https://doi.org/10.1103/PhysRevE.109.L032108
chicago: Sobarzo Ponce, Juan Carlos A, and Scott R Waitukaitis. “Multiple Charge
Carrier Species as a Possible Cause for Triboelectric Cycles.” Physical Review
E. American Physical Society, 2024. https://doi.org/10.1103/PhysRevE.109.L032108.
ieee: J. C. A. Sobarzo Ponce and S. R. Waitukaitis, “Multiple charge carrier species
as a possible cause for triboelectric cycles,” Physical Review E, vol.
109, no. 3. American Physical Society, 2024.
ista: Sobarzo Ponce JCA, Waitukaitis SR. 2024. Multiple charge carrier species as
a possible cause for triboelectric cycles. Physical Review E. 109(3), L032108.
mla: Sobarzo Ponce, Juan Carlos A., and Scott R. Waitukaitis. “Multiple Charge Carrier
Species as a Possible Cause for Triboelectric Cycles.” Physical Review E,
vol. 109, no. 3, L032108, American Physical Society, 2024, doi:10.1103/PhysRevE.109.L032108.
short: J.C.A. Sobarzo Ponce, S.R. Waitukaitis, Physical Review E 109 (2024).
corr_author: '1'
date_created: 2024-04-14T22:01:03Z
date_published: 2024-03-29T00:00:00Z
date_updated: 2026-04-07T11:50:54Z
day: '29'
department:
- _id: ScWa
doi: 10.1103/PhysRevE.109.L032108
external_id:
isi:
- '001199745200004'
pmid:
- '38632754'
intvolume: ' 109'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
pmid: 1
publication: Physical Review E
publication_identifier:
eissn:
- 2470-0053
issn:
- 2470-0045
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
record:
- id: '20203'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Multiple charge carrier species as a possible cause for triboelectric cycles
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 109
year: '2024'
...